CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023471	Salmonella enterica subsp. enterica strain BAA-1672 plasmid pSalSendai, complete sequence	0 crisprs	cas14j	0	0	1	0
CP023470	Salmonella enterica subsp. enterica strain BAA-1672 chromosome, complete genome	2 crisprs	cas3,DEDDh,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	5	7	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

49742 : 56920

Enterobacteria_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR40862.1\|49742_50912_+\|transposase	transposase	A0A077SLN2	Escherichia_phage	9.6e-178	84.6
AXR40863.1\|50915_51125_+	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	2.5e-12	53.4
AXR40864.1\|51265_52228_-	chromosome partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	3.1e-113	68.3
AXR40865.1\|52224_53430_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	5.6e-205	89.4
AXR40866.1\|53803_54016_+	hypothetical protein	NA	NA	NA	NA
AXR40867.1\|54188_54440_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
AXR40868.1\|54436_54724_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	A0A2H4JBF4	uncultured_Caudovirales_phage	5.8e-20	48.4
AXR40869.1\|55010_55301_+	hypothetical protein	NA	NA	NA	NA
AXR40870.1\|55942_56920_+	replication initiation protein	J9Q7H0	Salmonella_phage	3.9e-100	63.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP023470

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CRISPR-Cas detection and classification

Crispr_ID: CP023470_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023470_1

2294590-2294680

Orphan

Consensus_repeat	Method
CGTCGCCATCCGGCAGTCACAAAACAGTACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023470_1

>merge|CP023470|1|2294590-2294680|CRISPRCasFinder
CGTCGCCATCCGGCAGTCACAAAACAGTACCCGTCCGTAGGCCGGATAAGACGTTTCACGTCGCCATCCGGCAGTCGCAAAACAGTACCCG

>CP023470|1|1|2294590-2294680|CRISPRCasFinder
CGTCGCCATCCGGCAGTCACAAAACAGTACCCG	TCCGTAGGCCGGATAAGACGTTTCA
CGTCGCCATCCGGCAGTCGCAAAACAGTACCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP023470.1\|AXR40730.1\|2290116_2291421_-\|inosine/guanosine-kinase	unknown	unknown	gnl\|CDD\|185033
CP023470.1\|AXR38712.1\|2294735_2296610_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
CP023470.1\|AXR38706.1\|2285132_2286785_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236566
CP023470.1\|AXR38718.1\|2300446_2300824_-\|DUF454-domain-containing-protein	unknown	unknown	gnl\|CDD\|182520
CP023470.1\|AXR38707.1\|2286956_2288177_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
CP023470.1\|AXR38711.1\|2293733_2294378_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
CP023470.1\|AXR38710.1\|2292541_2293504_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
CP023470.1\|AXR38716.1\|2299742_2300294_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
CP023470.1\|AXR38704.1\|2283540_2284335_+\|polysaccharide-biosynthesis-protein-GumN	unknown	unknown	gnl\|CDD\|226258
CP023470.1\|AXR38715.1\|2297700_2299629_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138
CP023470.1\|AXR38719.1\|2300904_2301420_+\|primosomal-replication-protein-N''	unknown	unknown	gnl\|CDD\|182236
CP023470.1\|AXR38713.1\|2296720_2297326_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
CP023470.1\|AXR38709.1\|2291573_2292545_+\|acetyl-esterase	unknown	unknown	gnl\|CDD\|236660
CP023470.1\|AXR38721.1\|2301670_2302594_+\|transposase	unknown	unknown	gnl\|CDD\|368098
CP023470.1\|AXR38714.1\|2297325_2297655_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
CP023470.1\|AXR38720.1\|2301433_2301601_+\|DUF2496-domain-containing-protein	unknown	unknown	gnl\|CDD\|182920
CP023470.1\|AXR40731.1\|2294294_2294516_+\|hypothetical-protein	unknown	unknown	unknown
CP023470.1\|AXR38708.1\|2288391_2290068_+\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
CP023470.1\|AXR38705.1\|2284536_2285016_+\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|182634
CP023470.1\|AXR38717.1\|2300361_2300469_-\|adenine-phosphoribosyltransferase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP023470.1\|AXR40730.1\|2290116_2291421_-\|inosine/guanosine-kinase	gnl\|CDD\|185033	PRK15074, PRK15074, inosine/guanosine kinase; Provisional.	0
CP023470.1\|AXR38712.1\|2294735_2296610_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
CP023470.1\|AXR38706.1\|2285132_2286785_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl\|CDD\|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0
CP023470.1\|AXR38718.1\|2300446_2300824_-\|DUF454-domain-containing-protein	gnl\|CDD\|182520	PRK10527, PRK10527, DUF454 family protein.	1.23989e-73
CP023470.1\|AXR38707.1\|2286956_2288177_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.16334e-112
CP023470.1\|AXR38711.1\|2293733_2294378_-\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	1.31162e-134
CP023470.1\|AXR38710.1\|2292541_2293504_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	1.62053e-164
CP023470.1\|AXR38716.1\|2299742_2300294_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	8.05731e-100
CP023470.1\|AXR38704.1\|2283540_2284335_+\|polysaccharide-biosynthesis-protein-GumN	gnl\|CDD\|226258	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown].	4.28362e-109
CP023470.1\|AXR38715.1\|2297700_2299629_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0
CP023470.1\|AXR38719.1\|2300904_2301420_+\|primosomal-replication-protein-N''	gnl\|CDD\|182236	PRK10093, PRK10093, primosomal replication protein N''; Provisional.	1.01266e-81
CP023470.1\|AXR38713.1\|2296720_2297326_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.38799e-120
CP023470.1\|AXR38709.1\|2291573_2292545_+\|acetyl-esterase	gnl\|CDD\|236660	PRK10162, PRK10162, acetyl esterase.	0
CP023470.1\|AXR38721.1\|2301670_2302594_+\|transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	4.27706e-115
CP023470.1\|AXR38714.1\|2297325_2297655_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.74574e-46
CP023470.1\|AXR38720.1\|2301433_2301601_+\|DUF2496-domain-containing-protein	gnl\|CDD\|182920	PRK11038, PRK11038, hypothetical protein; Provisional.	8.73514e-19
CP023470.1\|AXR38708.1\|2288391_2290068_+\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
CP023470.1\|AXR38705.1\|2284536_2285016_+\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|182634	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.	2.0569e-109

>CP023470.1|AXR40731.1|2294294_2294516_+|hypothetical-protein
MRNTIFLHDELSLSSFTRARSAKQNNTHYENPLKGCRYFLKSAKRYHHHAFRSRKPPDAETVNEEKSRKEKAL
>CP023470.1|AXR38711.1|2293733_2294378_-|adenylate-kinase
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIVVDYVLEFDVPDELIVDRIVGRRVHAASGRVYHVKFNPPKVEGKDDVTGEDLTTRKDDQEETVRKRLVEYHQMTAPLIGYYQKEAEAGNTKYAKVDGTQAVADVRAALEKILG
>CP023470.1|AXR38710.1|2292541_2293504_-|ferrochelatase
MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTPRLLWWPLLRGVILPLRSPRVAKLYQSIWMDGGSPLMVYSREQQQALAARLPDTPVALGMSYGSPSLESAVDELLASDVDHIVVLPLYPQYSCSTVGAVWDELGRILARKRRIPGISFIRDYADDGAYIDALAKSARESFARHGEPDVLLLSYHGIPQRYADEGDDYPQRCRDTTRELVSALGLPPEKVMMTFQSRFGREPWLTPYTDETLKMLGEKGTGHIQVMCPGFAADCLETLEEIAEQNREIFLEVGGKKYAYIPALNATPEHIDMMLKLTAPYR
>CP023470.1|AXR38709.1|2291573_2292545_+|acetyl-esterase
MKPENKIPVLTRLSDEMKAVVNFQQPGLPPWPADGDIETQRQYYLLERRFWNADAPSMTTRTCAVPTPYGDVTTRLYSPQPTSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQARYPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNNYLTRDVPPCFIASAEFDPLIDDSRLLHQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKTPR
>CP023470.1|AXR40730.1|2290116_2291421_-|inosine/guanosine-kinase
MKFPGKRKSKHYFPVNARDPLLQQIQPEQETNASWVVGIDQTLVDIEAKVDDDFITRYGLSAGHSLVIEDEVAEKLYQELTRENLITHQFAGGTIGNTMHNYSVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQAVDGPIGRCFTLIGESGERTFAISPGHMNQLRAESIPEAVIAGASALVLTSYLVRCKPGEPMPDATMKAIEYAKKHNVPVVMTLGTKFVIADNPQWWQAFLKENVSILAMNEEEAEALTGENDPLLAADKALDWVDLVLCTAGPIGLYMAGFTEEEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCINPLRVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYSSLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR
>CP023470.1|AXR38708.1|2288391_2290068_+|Kef-family-K(+)-transporter
MHHATPLITTIVGGLVLAFILGMIANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAVAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLLDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMVEKGDVGIASLAVDMGITIGKVVAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLVLIQQPLAVLATLAIIVFGKSIAAFFLVRMFGHSPRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLEKYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGFGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMNLAHLDCARWLLLTIPNGYEAGEIVASAREKSPDIEIIARAHYDDEVKYITERGANQVVMGEREIARAMLELLKTPPAGEVVAS
>CP023470.1|AXR38707.1|2286956_2288177_+|MFS-transporter
MAMSEPTQPLAGAPAAAAKARTSFGILGAISLSHLLNDMIQSLILAIYPLLQAEFSLTFVQIGLITLTFQLASSLLQPVVGYWTDKYPMPWSLPVGMCFTLSGLVLLAMAGSFGGVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFGSSLGPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYAAQHRIAKGKPKAIIANPLPRNKVVLAVSVLLLLIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLSAFLFAVAAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLVLPYATLYWTGILTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIYLVYKICAFLPLLGILTIFLPDNRHKA
>CP023470.1|AXR38706.1|2285132_2286785_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MKFLKRGVALALLAAFALTTQPAQAYEKDKTYKITILHTNDHHGHFWRSEYGEYGLAAQKTLVDSIRKEVAQEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDAMAVGNHEFDNPLTVLRQQEKWAKFPFLSANIYQKSTGERLFKPWAIFTRQDIKIAVIGLTTDDTTKIGNPEYFTDIEFRKPAEEAKVVIQELNMNEKPDVIIATTHMGHYDNGDHGSNAPGDVEMARSLPAGSLAMIVGGHSQDPVCMASENKKQVNYVPGTPCAPDKQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWDNGKSERVLYTPEIAENPQMLSLLTPFQNKGKAQLEVKIGSVNGLLEGDRSKVRFVQTNMGRVILAAQIARTGADFGVMSGGGIRDSIEAGDITYKSVLKVQPFGNIVVYADMSGKEVVDYLTAVAQMKPDSGAYPQFANVSFVAKEGKLTDLKIKGEPVDPAKTYRMATLSFNATGGDGYPRIDNKPGYVNTGFIDAEVLKEFIQQNSPLDAAAFTPKGEVSWL
>CP023470.1|AXR38705.1|2284536_2285016_+|Cys-tRNA(Pro)-deacylase
MTPAVKLLEKNKIPFNIHTYDHDPNETNFGDEVVRKLGLNADQVYKTLLVAVNGDMKQLAVAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYLVGGISPLGQKKRLPTLIDAPARTFATIYVSGGKRGLDIELAADDLAAILGAKLADIARRD
>CP023470.1|AXR38704.1|2283540_2284335_+|polysaccharide-biosynthesis-protein-GumN
MELLNQLKRLWRALRGTPNSWPAIDLSLPGGRHLHLVGSIHMGTRDMAPLPAKLVKKLRQADALVVEADISGNETPFSNLPKCPPLVERLSAGQLSALEKRVSELGMPLIHFDNQPLWQIAMVLQATQAQRLGLRPDYGIDYQLLQAAREMSLPVQELEGAKHQLELLCDLPDGGMALLDDTLTHWHTNARLLQVMIGWWLEQPPTSVGASLPRTFSQPLYDVLMVKRNEAWRDALLALSPGRYVVAVGALHLYGEGNLPQILK
>CP023470.1|AXR38712.1|2294735_2296610_-|molecular-chaperone-HtpG
MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTIADNGVGMNRDEVIDHLGTIAKSGTKSFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDKPENGVFWESAGEGEYTVADITKNDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWEKINKAQALWTRNKSEIKDDEYNEFYKHIAHDFTDPLTWSHNRVEGKQEYTSLLYIPSQAPWDLWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSNDLPLNVSREILQDSTVTRNLRSALTKRVLQMLEKLAKDDAEKYQTFWKQFGLVLKEGPAEDHANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKNSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKAFQSVAKADESIEKLADEVDENAKEAEKALEPFVERVKTLLGDRVKEVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQSVPEVKYIFELNPDHVLVKRTADTEDEAQFKEWVELLLDQALFAERGTLEDPNQFIRRMNQLLVS
>CP023470.1|AXR38713.1|2296720_2297326_-|recombination-protein-RecR
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLASEKISELILATNPTVEGEATANYIAELCAEAGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIIF
>CP023470.1|AXR38714.1|2297325_2297655_-|YbaB/EbfC-family-nucleoid-associated-protein
MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF
>CP023470.1|AXR38715.1|2297700_2299629_-|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEGLLVEMLSLLHRIAMVQLSPAALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLIGRKELPWAPDRRMGVEMTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQVQQPSAPAPQTSPAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLASVSERVQARPAPSALETAPVKKEAYRWKATTPVVQTKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEQNGNAVCLHLRSTQRHLNSSGAQQKLAQALSDLTGTTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI
>CP023470.1|AXR38716.1|2299742_2300294_-|adenine-phosphoribosyltransferase
MTATAQQLEFLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRLEKQGITCYSLVPFPGH
>CP023470.1|AXR38717.1|2300361_2300469_-|adenine-phosphoribosyltransferase
MKSNKSAEAHESLLQLSFTASKFDRFRAQAQAVKE
>CP023470.1|AXR38718.1|2300446_2300824_-|DUF454-domain-containing-protein
MQRTILIIIGWLAVVLGTLGVVLPLLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGGYLRHWQRYRAMPPGAKPRAIALILLTFGISLWLVNMMWVRVLLLVILACLLIFMWRIPVIDEKQQKR
>CP023470.1|AXR38719.1|2300904_2301420_+|primosomal-replication-protein-N''
MLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEADANLAALRQAVKHEQLPQVAWLAEHLASQLEAISRETATWSLRQWDAAAPGLGRWQRRRIQHQEFERRLLAMTQERKIRLAQATGLVEQQTLQKEVEIYEGRLARCRHALEKIENVLARLTR
>CP023470.1|AXR38720.1|2301433_2301601_+|DUF2496-domain-containing-protein
MSLENAPDEVKLAVDLIVLLEENRLPARTVLRALEIVMRDYENKLKSTEDDSQTE
>CP023470.1|AXR38721.1|2301670_2302594_+|transposase
MERLPTTPHDAVFRQMLMQKEVARDFLALHMPEDFLAICDLDSLKLESGSFVEDNLRSRYSDILYSLHTQHGPGYVYALIEHQSKSDRLMAFRLMRYAIAAMQRHLDAGHDTLPLVVPILFYHGPESPWPYSLNWHNMFVKPDMAKALYSHEFALVDLTRMPDNQLLQHRRIAMLELLQKHIRQRDLSELLDPLITLLTQDHLTDTQLSVLINYMLKAGNAAEPGALIRQLAQGAPQYKEQLMTIAEWLEEKGRTEGLQKGLEQGLAQGREAEARAIARKMFANGLEPGLIASVTGITPEELSTLSH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP023470_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023470_2

2783332-2783544

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACACC	PILER-CR

3 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP023470_2

>merge|CP023470|2|2783332-2783544|CRT,CRISPRCasFinder,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACAATTTTTGATAGAACCAATTCCCCTTTCGGTACGGTTTATCCCCGCTGGCGCGGGGAACACCCGTTGGCCAGGCCGGGCAGCAATTTAAGGCACGGTTTATCCCCGCTGGCGCGGGGAACACCGTTTACGTTTGCCGACGATTTAACTAAACAGCGGTTTATCCCCGCTGGCGCGGGGAACACT

>CP023470|2|1|2783332-2783543|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	AATTTTTGATAGAACCAATTCCCCTTTCGGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTGGCCAGGCCGGGCAGCAATTTAAGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTTACGTTTGCCGACGATTTAACTAAACAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP023470|2|2|2783334-2783543|CRISPRCasFinder
GTTTATCCCCGCTGGCGCGGGGAACAC	AATTTTTGATAGAACCAATTCCCCTTTCGGTACG
GTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTGGCCAGGCCGGGCAGCAATTTAAGGCACG
GTTTATCCCCGCTGGCGCGGGGAACAC	CGTTTACGTTTGCCGACGATTTAACTAAACAGCG
GTTTATCCCCGCTGGCGCGGGGAACAC

>CP023470|2|1|2783393-2783544|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACACC	CGTTGGCCAGGCCGGGCAGCAATTTAAGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACACC	GTTTACGTTTGCCGACGATTTAACTAAACAG
CGGTTTATCCCCGCTGGCGCGGGGAACACT

Protein	Signature genes	Signature genes Name	Protein_function
CP023470.1\|AXR39164.1\|2786279_2787344_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP023470.1\|AXR39151.1\|2775198_2775960_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP023470.1\|AXR39167.1\|2789872_2792572_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP023470.1\|AXR39165.1\|2787360_2787963_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP023470.1\|AXR39163.1\|2785544_2786270_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP023470.1\|AXR39156.1\|2778696_2779053_-\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP023470.1\|AXR39154.1\|2777465_2778176_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP023470.1\|AXR39152.1\|2775940_2776990_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP023470.1\|AXR39168.1\|2792951_2793905_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP023470.1\|AXR39158.1\|2779662_2781102_-\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP023470.1\|AXR39157.1\|2779070_2779676_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP023470.1\|AXR39160.1\|2783627_2783921_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP023470.1\|AXR39159.1\|2781111_2782020_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP023470.1\|AXR39169.1\|2793992_2794727_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP023470.1\|AXR39150.1\|2774578_2775205_-\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
CP023470.1\|AXR39161.1\|2783950_2784841_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP023470.1\|AXR39155.1\|2778194_2778506_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP023470.1\|AXR39162.1\|2784840_2785545_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP023470.1\|AXR39166.1\|2787979_2789515_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP023470.1\|AXR39153.1\|2776986_2777466_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851

Protein	Function_ID	Function_description	E-value
CP023470.1\|AXR39164.1\|2786279_2787344_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.19291e-121
CP023470.1\|AXR39151.1\|2775198_2775960_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.28081e-145
CP023470.1\|AXR39167.1\|2789872_2792572_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.08433e-143
CP023470.1\|AXR39165.1\|2787360_2787963_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
CP023470.1\|AXR39163.1\|2785544_2786270_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
CP023470.1\|AXR39156.1\|2778696_2779053_-\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.10351e-48
CP023470.1\|AXR39154.1\|2777465_2778176_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.09521e-118
CP023470.1\|AXR39152.1\|2775940_2776990_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP023470.1\|AXR39168.1\|2792951_2793905_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP023470.1\|AXR39158.1\|2779662_2781102_-\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP023470.1\|AXR39157.1\|2779070_2779676_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.83357e-145
CP023470.1\|AXR39160.1\|2783627_2783921_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
CP023470.1\|AXR39159.1\|2781111_2782020_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP023470.1\|AXR39169.1\|2793992_2794727_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.42567e-137
CP023470.1\|AXR39150.1\|2774578_2775205_-\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	4.34083e-128
CP023470.1\|AXR39161.1\|2783950_2784841_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.51774e-156
CP023470.1\|AXR39155.1\|2778194_2778506_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP023470.1\|AXR39162.1\|2784840_2785545_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.09075e-89
CP023470.1\|AXR39166.1\|2787979_2789515_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP023470.1\|AXR39153.1\|2776986_2777466_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104

>CP023470.1|AXR39159.1|2781111_2782020_-|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLETESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP023470.1|AXR39158.1|2779662_2781102_-|sulfate-adenylyltransferase
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKMLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP023470.1|AXR39157.1|2779070_2779676_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVMLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP023470.1|AXR39156.1|2778696_2779053_-|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLTLMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP023470.1|AXR39155.1|2778194_2778506_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP023470.1|AXR39154.1|2777465_2778176_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPEKTAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGAIITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP023470.1|AXR39153.1|2776986_2777466_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP023470.1|AXR39152.1|2775940_2776990_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP023470.1|AXR39151.1|2775198_2775960_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALRKFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGLDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP023470.1|AXR39150.1|2774578_2775205_-|protein-L-isoaspartate-O-methyltransferase
MVSGRVQALLEQLRAQGIRDELVLNALAAVPREKFIDEAFEHKAWENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA
>CP023470.1|AXR39160.1|2783627_2783921_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>CP023470.1|AXR39161.1|2783950_2784841_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKLLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVA
>CP023470.1|AXR39162.1|2784840_2785545_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGAFCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>CP023470.1|AXR39163.1|2785544_2786270_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>CP023470.1|AXR39164.1|2786279_2787344_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVSRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>CP023470.1|AXR39165.1|2787360_2787963_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>CP023470.1|AXR39166.1|2787979_2789515_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP023470.1|AXR39167.1|2789872_2792572_+|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVALNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDTGEASYYSKRFGLVG
>CP023470.1|AXR39168.1|2792951_2793905_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRIAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLTCINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP023470.1|AXR39169.1|2793992_2794727_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPEAYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229405-229429	3	0.88
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239899-239923	3	0.88
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230811-230835	3	0.88
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211781-211805	3	0.88
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229102-229126	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229203-229227	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4069-4093	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239596-239620	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239697-239721	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4068-4092	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230508-230532	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230609-230633	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4068-4092	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211478-211502	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211579-211603	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4068-4092	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	428615-428639	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40400-40424	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	19394-19418	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	35218-35242	4	0.84
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229304-229328	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239798-239822	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230710-230734	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211680-211704	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	424303-424327	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386513-386537	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27301-27325	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27400-27424	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7447-7471	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84271-84295	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	8893-8917	5	0.8
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_CP019203	Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence	12700-12724	6	0.76
CP023470_1	1.1\|2294623\|25\|CP023470\|CRISPRCasFinder	2294623-2294647	25	NZ_LN868945	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence	9582-9606	6	0.76
CP023470_2	2.7\|2783423\|31\|CP023470\|PILER-CR	2783423-2783453	31	NZ_CP026333	Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence	391644-391674	7	0.774
CP023470_2	2.7\|2783423\|31\|CP023470\|PILER-CR	2783423-2783453	31	MN310371	Pseudomonas monteilii strain QJ20133 plasmid pJ20133-VIM, complete sequence	146869-146899	7	0.774
CP023470_2	2.7\|2783423\|31\|CP023470\|PILER-CR	2783423-2783453	31	NC_022739	Pseudomonas sp. VLB120 plasmid pSTY, complete sequence	291309-291339	7	0.774
CP023470_2	2.2\|2783422\|32\|CP023470\|CRT	2783422-2783453	32	NZ_CP026333	Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence	391643-391674	8	0.75
CP023470_2	2.2\|2783422\|32\|CP023470\|CRT	2783422-2783453	32	MN310371	Pseudomonas monteilii strain QJ20133 plasmid pJ20133-VIM, complete sequence	146868-146899	8	0.75
CP023470_2	2.2\|2783422\|32\|CP023470\|CRT	2783422-2783453	32	NC_022739	Pseudomonas sp. VLB120 plasmid pSTY, complete sequence	291308-291339	8	0.75
CP023470_2	2.8\|2783484\|31\|CP023470\|PILER-CR	2783484-2783514	31	NZ_CP019739	Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-5, complete sequence	3689-3719	9	0.71
CP023470_2	2.3\|2783483\|32\|CP023470\|CRT	2783483-2783514	32	NZ_CP019739	Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-5, complete sequence	3689-3720	10	0.688
CP023470_2	2.3\|2783483\|32\|CP023470\|CRT	2783483-2783514	32	NZ_CP030354	Novosphingobium sp. P6W plasmid pP6W1, complete sequence	379454-379485	10	0.688

1. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.88

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgtttac	Protospacer
*****************.*****

2. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.88

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgtttac	Protospacer
*****************.*****

3. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.88

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgtttac	Protospacer
*****************.*****

4. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.88

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgtttac	Protospacer
*****************.*****

5. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgttcac	Protospacer
*****************.****.

6. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgttcac	Protospacer
*****************.****.

7. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tcggtaggccggataaggcgtttat	Protospacer
** **************.*****

8. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgttcac	Protospacer
*****************.****.

9. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgttcac	Protospacer
*****************.****.

10. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tcggtaggccggataaggcgtttat	Protospacer
** **************.*****

11. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgttcac	Protospacer
*****************.****.

12. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgttcac	Protospacer
*****************.****.

13. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tcggtaggccggataaggcgtttat	Protospacer
** **************.*****

14. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgttcac	Protospacer
*****************.****.

15. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgttcac	Protospacer
*****************.****.

16. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tcggtaggccggataaggcgtttat	Protospacer
** **************.*****

17. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
cctgtaggccggataagacgtttac	Protospacer
.*.********************

18. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
accgtaggccggataaggcgtttac	Protospacer
 ****************.*****

19. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tccgtaggccggataaggcgttcac	Protospacer
*****************.****.

20. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 4, identity: 0.84

tccgtaggccggataagacgtttca	CRISPR spacer
tcagtaggccggataagacgctttg	Protospacer
** *****************.**..

21. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
cccgtaggccggataaggcgttcac	Protospacer
.****************.****.

22. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
cccgtaggccggataaggcgttcac	Protospacer
.****************.****.

23. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
cccgtaggccggataaggcgttcac	Protospacer
.****************.****.

24. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
cccgtaggccggataaggcgttcac	Protospacer
.****************.****.

25. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
accgtaggccggataaggcgttcgc	Protospacer
 ****************.****.

26. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
ggcgtaggccggataaggcgtttac	Protospacer
  ***************.*****

27. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
cccgtaggccggataaggcgttcac	Protospacer
.****************.****.

28. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
cccgtaggccggataaggcgttcac	Protospacer
.****************.****.

29. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
accgtaggccggataaggcgttcac	Protospacer
 ****************.****.

30. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
accgtaggccggataaggcgttcac	Protospacer
 ****************.****.

31. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 5, identity: 0.8

tccgtaggccggataagacgtttca	CRISPR spacer
atcgtaggccggataaggcgtttac	Protospacer
 .***************.*****

32. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 6, identity: 0.76

tccgtaggccggataagacgtttca	CRISPR spacer
accgtaggccggataagacgcgcag	Protospacer
 *******************. . .

33. spacer 1.1|2294623|25|CP023470|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.76

tccgtaggccggataagacgtttca	CRISPR spacer
accgtaggccggataagacgcgcag	Protospacer
 *******************. . .

34. spacer 2.7|2783423|31|CP023470|PILER-CR matches to NZ_CP026333 (Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence) position: , mismatch: 7, identity: 0.774

cgttggccaggccgggcagcaatttaaggca	CRISPR spacer
cgtaggccaggccgagcagcaatgggagcaa	Protospacer
*** **********.********  .**  *

35. spacer 2.7|2783423|31|CP023470|PILER-CR matches to MN310371 (Pseudomonas monteilii strain QJ20133 plasmid pJ20133-VIM, complete sequence) position: , mismatch: 7, identity: 0.774

cgttggccaggccgggcagcaatttaaggca	CRISPR spacer
cgtaggccaggccgagcagcaatgggagcaa	Protospacer
*** **********.********  .**  *

36. spacer 2.7|2783423|31|CP023470|PILER-CR matches to NC_022739 (Pseudomonas sp. VLB120 plasmid pSTY, complete sequence) position: , mismatch: 7, identity: 0.774

cgttggccaggccgggcagcaatttaaggca	CRISPR spacer
cgtaggccaggccgagcagcaatgggagcaa	Protospacer
*** **********.********  .**  *

37. spacer 2.2|2783422|32|CP023470|CRT matches to NZ_CP026333 (Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttggccaggccgggcagcaatttaaggca	CRISPR spacer
gcgtaggccaggccgagcagcaatgggagcaa	Protospacer
 *** **********.********  .**  *

38. spacer 2.2|2783422|32|CP023470|CRT matches to MN310371 (Pseudomonas monteilii strain QJ20133 plasmid pJ20133-VIM, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttggccaggccgggcagcaatttaaggca	CRISPR spacer
gcgtaggccaggccgagcagcaatgggagcaa	Protospacer
 *** **********.********  .**  *

39. spacer 2.2|2783422|32|CP023470|CRT matches to NC_022739 (Pseudomonas sp. VLB120 plasmid pSTY, complete sequence) position: , mismatch: 8, identity: 0.75

ccgttggccaggccgggcagcaatttaaggca	CRISPR spacer
gcgtaggccaggccgagcagcaatgggagcaa	Protospacer
 *** **********.********  .**  *

40. spacer 2.8|2783484|31|CP023470|PILER-CR matches to NZ_CP019739 (Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-5, complete sequence) position: , mismatch: 9, identity: 0.71

gtttacgtttgccgacgatttaactaaacag	CRISPR spacer
gggattgtttgccgactatctaactaaacta	Protospacer
*    .********** **.********* .

41. spacer 2.3|2783483|32|CP023470|CRT matches to NZ_CP019739 (Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-5, complete sequence) position: , mismatch: 10, identity: 0.688

cgtttacgtttgccgacgatttaactaaacag	CRISPR spacer
agggattgtttgccgactatctaactaaacta	Protospacer
 *    .********** **.********* .

42. spacer 2.3|2783483|32|CP023470|CRT matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtttacgtttgccgacgatttaactaaacag	CRISPR spacer
cgtttacgtttgccgataatttacgcatttgc	Protospacer
****************..*****  .*  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

764624 : 773798

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR37310.1\|764624_765572_+	ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AXR37311.1\|765555_766287_+	ABC transporter permease	NA	NA	NA	NA
AXR37312.1\|766267_766375_-	hypothetical protein	NA	NA	NA	NA
AXR37313.1\|766434_767166_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXR37314.1\|767388_769074_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.4e-278	88.8
AXR37315.1\|769070_769790_+	DNA-binding response regulator	NA	NA	NA	NA
AXR37316.1\|769836_770304_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AXR37317.1\|770360_770891_-	hypothetical protein	NA	NA	NA	NA
AXR37318.1\|771062_771521_-	hypothetical protein	Q9EYF5	Enterobacteria_phage	2.4e-52	71.9
AXR37319.1\|771761_773798_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.8e-55	27.6

DBSCAN-SWA_2

852407 : 860063

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR37383.1\|852407_853493_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AXR37384.1\|853492_854392_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.7e-31	36.3
AXR40662.1\|854439_855318_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.0e-108	65.2
AXR37385.1\|855318_855870_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
AXR37386.1\|855875_856850_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AXR37387.1\|856865_857639_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AXR37388.1\|857643_858723_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
AXR37389.1\|858749_860063_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_3

937384 : 944612

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR37460.1\|937384_937804_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AXR37461.1\|937806_939075_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.3e-225	91.7
AXR37462.1\|939520_939733_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AXR40665.1\|939743_939932_+	cold-shock protein	NA	NA	NA	NA
AXR37463.1\|940192_941371_-	porin	Q1MVN1	Enterobacteria_phage	2.3e-107	56.4
AXR37464.1\|941382_941583_-	hypothetical protein	NA	NA	NA	NA
AXR37465.1\|942021_942333_+	hypothetical protein	NA	NA	NA	NA
AXR37466.1\|942412_943108_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	27.5
AXR37467.1\|943181_944612_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_4

1635074 : 1643267

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR38128.1\|1635074_1635314_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
AXR40696.1\|1636187_1636997_+	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	4.2e-63	50.4
AXR38129.1\|1637069_1637447_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AXR38130.1\|1637594_1638137_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AXR38131.1\|1638328_1639057_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	4.1e-62	52.9
AXR38132.1\|1639073_1639487_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6
AXR38133.1\|1640129_1640402_+	hypothetical protein	NA	NA	NA	NA
AXR38134.1\|1640433_1641558_-	hypothetical protein	NA	NA	NA	NA
AXR38135.1\|1642016_1643267_-	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	1.1e-19	92.6

DBSCAN-SWA_5

1893646 : 1903176

Ralstonia_phage(16.67%)

protease,integrase

attL 1888437:1888451|attR 1901912:1901926

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1888437:1888451	attL	NA	NA	NA	NA
AXR38359.1\|1893646_1894024_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	2.6e-20	41.0
AXR40711.1\|1894185_1894383_+	hypothetical protein	NA	NA	NA	NA
AXR38360.1\|1895783_1896314_+	adhesin	NA	NA	NA	NA
AXR38361.1\|1896812_1899089_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.9e-164	42.2
AXR38362.1\|1899119_1899440_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AXR38363.1\|1899763_1899985_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AXR38364.1\|1899939_1900134_-	hypothetical protein	NA	NA	NA	NA
AXR38365.1\|1900114_1902061_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
1901912:1901926	attR	NA	NA	NA	NA
AXR38366.1\|1902057_1903176_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

DBSCAN-SWA_6

2526224 : 2625206

Salmonella_phage(82.0%)

capsid,tRNA,plate,integrase,head,portal,tail

attL 2588383:2588427|attR 2621847:2621891

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR38919.1\|2526224_2526719_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AXR38920.1\|2526734_2528618_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AXR38921.1\|2528614_2529610_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AXR38922.1\|2529620_2530676_+	cytoplasmic protein	NA	NA	NA	NA
AXR40743.1\|2531206_2531938_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.4e-39	39.9
AXR38923.1\|2532001_2532469_+	ribonuclease HI	J9Q745	Salmonella_phage	4.7e-51	58.9
AXR38924.1\|2532465_2533188_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXR38925.1\|2533222_2533978_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AXR38926.1\|2534049_2535417_+	murein transglycosylase D	A0A0A7NU10	Lactobacillus_phage	1.4e-10	33.0
AXR38927.1\|2535472_2536243_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXR38928.1\|2536320_2537121_-	EEP domain-containing protein	NA	NA	NA	NA
AXR38929.1\|2537252_2538428_-	MFS transporter	NA	NA	NA	NA
AXR38930.1\|2538532_2539447_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXR38931.1\|2539468_2540272_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	5.1e-37	34.6
AXR38932.1\|2546274_2548848_-	chaperone protein ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
AXR38933.1\|2548977_2549709_-	hypothetical protein	NA	NA	NA	NA
AXR38934.1\|2549705_2550686_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
AXR38935.1\|2550817_2551555_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AXR38936.1\|2551826_2552165_+	ribosomal subunit interface protein	NA	NA	NA	NA
AXR38937.1\|2552415_2553576_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AXR38938.1\|2553536_2554445_-	gluconolactonase	NA	NA	NA	NA
AXR38939.1\|2554502_2555624_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AXR38940.1\|2557143_2557662_+	DUF4154 domain-containing protein	NA	NA	NA	NA
AXR38941.1\|2557654_2558875_+	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
AXR38942.1\|2559031_2559379_-	50S ribosomal protein L19	NA	NA	NA	NA
AXR38943.1\|2559419_2560187_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AXR40744.1\|2560231_2560780_-	ribosome maturation factor RimM	NA	NA	NA	NA
AXR38944.1\|2560798_2561047_-	30S ribosomal protein S16	NA	NA	NA	NA
AXR38945.1\|2561298_2562660_-	signal recognition particle protein	NA	NA	NA	NA
AXR38946.1\|2562825_2563617_+	inner membrane protein YpjD	NA	NA	NA	NA
AXR38947.1\|2563681_2564923_+	magnesium/cobalt efflux protein	NA	NA	NA	NA
AXR38948.1\|2565052_2565658_+	cytoplasmic protein	NA	NA	NA	NA
AXR38949.1\|2565698_2566289_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AXR38950.1\|2566285_2566480_-	molecular chaperone GrpE	NA	NA	NA	NA
AXR38951.1\|2566411_2567290_+	NAD(+) kinase	NA	NA	NA	NA
AXR38952.1\|2567375_2569037_+	DNA repair protein RecN	NA	NA	NA	NA
AXR38953.1\|2569185_2569524_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AXR38954.1\|2569689_2569980_-	RnfH family protein	NA	NA	NA	NA
AXR38955.1\|2569969_2570446_-	ubiquinone-binding protein	NA	NA	NA	NA
AXR40745.1\|2570595_2571078_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AXR38956.1\|2583235_2584645_+	type I secretion protein TolC	NA	NA	NA	NA
AXR38957.1\|2584641_2586822_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
AXR40746.1\|2586829_2587993_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
2588383:2588427	attL	NA	NA	NA	NA
AXR38958.1\|2588544_2588763_-	levansucrase regulator	E5G6Q4	Salmonella_phage	2.1e-38	100.0
AXR38959.1\|2588831_2589932_-	late control protein D	E5G6Q3	Salmonella_phage	2.6e-201	100.0
AXR38960.1\|2589928_2590414_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	4.4e-76	93.2
AXR38961.1\|2590410_2593218_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.6
AXR38962.1\|2593210_2593330_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.8e-15	100.0
AXR38963.1\|2593344_2593647_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	1.5e-45	100.0
AXR38964.1\|2593701_2594217_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
AXR38965.1\|2594226_2595399_-\|tail	phage tail protein	E5G6P7	Salmonella_phage	1.2e-220	98.5
AXR38966.1\|2595501_2595726_-	Hin recombinase	E5G6P5	Salmonella_phage	1.5e-34	100.0
AXR38967.1\|2595759_2596008_+\|tail	phage tail protein	A0A1B0VCD0	Salmonella_phage	2.0e-24	69.1
AXR38968.1\|2596601_2597177_-\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	4.3e-107	100.0
AXR38969.1\|2597176_2599030_-\|tail	phage tail protein	E5G6P0	Salmonella_phage	0.0e+00	96.9
AXR38970.1\|2599026_2599632_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.6e-118	100.0
AXR38971.1\|2599624_2600542_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	9.5e-157	98.4
AXR38972.1\|2600528_2600888_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	1.2e-57	95.0
AXR38973.1\|2600884_2601463_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.5
AXR38974.1\|2601531_2601978_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	7.6e-67	91.1
AXR38975.1\|2601970_2602402_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	4.0e-73	95.1
AXR38976.1\|2602364_2602568_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	1.7e-29	98.5
AXR38977.1\|2602497_2602926_-	hypothetical protein	A0A1S6KZX8	Salmonella_phage	2.6e-64	95.0
AXR38978.1\|2603300_2603810_-	glycoside hydrolase	A0A1S6KZY9	Salmonella_phage	1.3e-91	97.0
AXR38979.1\|2603790_2604006_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
AXR38980.1\|2604009_2604213_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
AXR38981.1\|2604212_2604677_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.5e-81	94.8
AXR38982.1\|2604770_2605421_-	hypothetical protein	A0A1S6KZX1	Salmonella_phage	5.4e-114	98.6
AXR38983.1\|2605417_2606485_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	4.8e-192	98.3
AXR38984.1\|2606501_2607335_-\|capsid	capsid protein	E5G6M5	Salmonella_phage	1.4e-127	97.5
AXR38985.1\|2607477_2609244_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	95.1
AXR38986.1\|2609243_2610284_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.0e-183	90.1
AXR38987.1\|2610369_2612121_-	AIPR family protein	NA	NA	NA	NA
AXR38988.1\|2612470_2613349_+	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	4.0e-51	49.8
AXR38989.1\|2613459_2613759_+	hypothetical protein	NA	NA	NA	NA
AXR38990.1\|2613827_2614016_-	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-26	100.0
AXR38991.1\|2614171_2616583_-	endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.8
AXR38992.1\|2616573_2617431_-	DNA adenine methylase	A0A1S6L011	Salmonella_phage	3.0e-128	79.6
AXR38993.1\|2617427_2617655_-	hypothetical protein	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
AXR38994.1\|2617654_2617888_-	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	1.5e-26	84.4
AXR38995.1\|2617955_2618297_-	hypothetical protein	E5G6L5	Salmonella_phage	1.6e-48	84.1
AXR38996.1\|2618516_2618975_+	hypothetical protein	NA	NA	NA	NA
AXR38997.1\|2618922_2619156_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
AXR38998.1\|2619163_2619673_-	hypothetical protein	A0A1S6L008	Salmonella_phage	3.5e-84	94.1
AXR38999.1\|2619705_2619948_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
AXR39000.1\|2620067_2620700_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	3.3e-116	99.5
AXR39001.1\|2620703_2621729_+\|integrase	integrase	A0A1S6L016	Salmonella_phage	2.4e-201	99.4
AXR39002.1\|2621895_2622129_-	hypothetical protein	NA	NA	NA	NA
2621847:2621891	attR	NA	NA	NA	NA
AXR39003.1\|2622414_2622954_-	phase 1 flagellin transcriptional repressor	NA	NA	NA	NA
AXR39004.1\|2623021_2624542_-	flagellin FliC	NA	NA	NA	NA
AXR39005.1\|2624633_2625206_+	DNA-invertase hin	A0A0A7NPV4	Enterobacteria_phage	2.0e-67	72.1

DBSCAN-SWA_7

4358069 : 4368743

Enterobacteria_phage(55.56%)

integrase

attL 4354490:4354506|attR 4363158:4363174

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4354490:4354506	attL	NA	NA	NA	NA
AXR40535.1\|4358069_4359089_-	NAD(P)-dependent alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	7.9e-43	30.4
AXR40536.1\|4359559_4360819_+\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	3.7e-74	41.2
AXR40537.1\|4360872_4361868_-	site-specific DNA-methyltransferase	S0A236	Cellulophaga_phage	3.5e-19	24.2
AXR40538.1\|4361923_4362160_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXR40539.1\|4362156_4362720_+	restriction endonuclease	A0A1B0UXL9	Roseobacter_phage	7.2e-30	42.9
AXR40540.1\|4362790_4362976_+	hypothetical protein	NA	NA	NA	NA
AXR40541.1\|4362939_4363506_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.0e-55	62.7
4363158:4363174	attR	NA	NA	NA	NA
AXR40542.1\|4363522_4363768_-	hypothetical protein	Q7M294	Enterobacteria_phage	6.3e-31	76.5
AXR40543.1\|4363764_4364502_-	glycoprotein 3	Q7M2A2	Enterobacteria_phage	3.4e-80	64.9
AXR40544.1\|4365302_4365854_+	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	2.0e-24	60.9
AXR40545.1\|4365850_4366078_+	hypothetical protein	NA	NA	NA	NA
AXR40546.1\|4366074_4366395_+	hypothetical protein	NA	NA	NA	NA
AXR40547.1\|4366409_4368743_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023471

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP023470

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection