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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029689 Klebsiella pneumoniae strain 160111 chromosome, complete genome 2 crisprs DEDDh,RT,csa3,cas3,WYL,DinG 0 0 13 0
CP030131 Klebsiella pneumoniae strain 160111 plasmid p5.6K_L111, complete sequence 0 crisprs NA 0 0 0 0
CP030132 Klebsiella pneumoniae strain 160111 plasmid pIncAC2_L111, complete sequence 0 crisprs RT,DEDDh 0 0 2 0
CP030134 Klebsiella pneumoniae strain 160111 plasmid pKPC2_L111, complete sequence 0 crisprs RT 0 0 1 0
CP030133 Klebsiella pneumoniae strain 160111 plasmid pIncFII_L111, complete sequence 0 crisprs NA 0 0 1 0
CP030130 Klebsiella pneumoniae strain 160111 plasmid p10K_L111, complete sequence 0 crisprs NA 0 0 0 0
CP030135 Klebsiella pneumoniae strain 160111 plasmid pOXA48_L111, complete sequence 0 crisprs RT 0 0 0 0

Results visualization

1. CP029689
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029689_1 3061941-3062026 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029689_2 3885801-3885878 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 371397 : 387143 14 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_2 427878 : 434784 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_3 744437 : 818923 82 Salmonella_phage(35.59%) transposase,protease,tail,holin,terminase NA
DBSCAN-SWA_4 890272 : 972780 88 Salmonella_phage(70.0%) transposase,portal,plate,coat,capsid,head,tail,integrase,lysis,tRNA attL 934967:935013|attR 973320:973366
DBSCAN-SWA_5 1694632 : 1764009 75 uncultured_Caudovirales_phage(61.11%) portal,protease,head,tail,integrase,terminase,capsid,tRNA attL 1730391:1730408|attR 1746385:1746402
DBSCAN-SWA_6 2835941 : 2849371 12 Enterobacteria_phage(71.43%) transposase NA
DBSCAN-SWA_7 3313676 : 3325329 13 Enterobacteria_phage(70.0%) NA NA
DBSCAN-SWA_8 3979374 : 4016710 47 Salmonella_phage(84.62%) portal,lysis,plate,head,integrase,tail,capsid attL 3979282:3979300|attR 4016782:4016800
DBSCAN-SWA_9 4051126 : 4060590 9 Dickeya_phage(16.67%) protease,tRNA NA
DBSCAN-SWA_10 4288664 : 4378942 94 Klebsiella_phage(46.34%) transposase,portal,head,tail,holin,terminase,tRNA NA
DBSCAN-SWA_11 4507813 : 4535253 39 Enterobacteria_phage(38.71%) transposase,integrase,holin attL 4499791:4499806|attR 4522630:4522645
DBSCAN-SWA_12 4568187 : 4639833 83 uncultured_Caudovirales_phage(32.0%) transposase,plate,head,tail,terminase,lysis NA
DBSCAN-SWA_13 4834145 : 4845032 9 Escherichia_phage(87.5%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP030133
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3742 : 17560 18 Enterobacteria_phage(18.18%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP030132
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 16870 : 48111 38 Escherichia_phage(20.0%) tail,transposase,head NA
DBSCAN-SWA_2 92754 : 144772 55 Salmonella_phage(31.58%) transposase,integrase attL 111201:111260|attR 144991:146356
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. CP030134
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 743 : 42579 43 Escherichia_phage(42.11%) integrase,transposase attL 11420:11434|attR 31965:31979
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage