CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP031791	Klebsiella pneumoniae strain KSB1_1I-sc-2280289 plasmid unnamed2, complete sequence	0 crisprs	PD-DExK,DEDDh	2
CP031790	Klebsiella pneumoniae strain KSB1_1I-sc-2280289 plasmid unnamed1, complete sequence	0 crisprs	NA	1
CP031789	Klebsiella pneumoniae strain KSB1_1I-sc-2280289 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,WYL	6

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 79391

Salmonella_phage(89.86%)

tail,terminase,integrase,capsid

attL 11495:11510|attR 23359:23374

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS06557.1\|0_1098_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.2e-73	47.3
AXS06558.1\|1549_1762_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
AXS06559.1\|1761_2097_-	hypothetical protein	J9Q7Z5	Salmonella_phage	2.1e-37	67.6
AXS06560.1\|2093_2273_-	hypothetical protein	NA	NA	NA	NA
AXS06561.1\|2806_3883_-	recombinase	J9Q736	Salmonella_phage	3.8e-197	96.4
AXS06562.1\|3885_4152_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.7e-34	84.1
AXS06563.1\|4151_5096_-	exonuclease	J9Q7S6	Salmonella_phage	1.1e-171	93.0
AXS06564.1\|5156_6164_-	regulator	J9Q7Z3	Salmonella_phage	4.6e-144	88.0
AXS06565.1\|6283_6715_-	hypothetical protein	J9Q6I8	Salmonella_phage	1.4e-65	91.6
AXS06566.1\|6870_7170_-	lipoprotein	NA	NA	NA	NA
AXS06671.1\|7181_7562_-	hypothetical protein	A0A291AWZ9	Escherichia_phage	1.0e-43	64.3
AXS06567.1\|7801_8245_-	hypothetical protein	J9Q7S4	Salmonella_phage	8.9e-60	83.7
AXS06568.1\|8241_11760_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	93.1
11495:11510	attL	NA	NA	NA	NA
AXS06569.1\|11734_11938_-	hypothetical protein	J9Q6I7	Salmonella_phage	7.2e-25	80.6
AXS06570.1\|11940_13173_-	porphyrin biosynthesis protein	J9Q733	Salmonella_phage	2.2e-212	86.4
AXS06571.1\|13269_15555_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	8.8e-244	62.9
AXS06572.1\|16156_16537_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXS06573.1\|16531_17632_-\|integrase	integrase	A0A1P8DTG6	Proteus_phage	1.6e-17	28.4
AXS06574.1\|17981_18341_+	hypothetical protein	NA	NA	NA	NA
AXS06575.1\|18405_18816_-	toxin YafO	NA	NA	NA	NA
AXS06576.1\|18825_19443_-	hypothetical protein	NA	NA	NA	NA
AXS06577.1\|19537_19783_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	9.1e-14	47.4
AXS06578.1\|19779_20166_-	hypothetical protein	Q716B1	Shigella_phage	1.9e-45	71.2
AXS06579.1\|20175_21021_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	4.9e-91	66.1
AXS06672.1\|21893_22685_+	hypothetical protein	NA	NA	NA	NA
AXS06580.1\|24098_24323_-	nuclease	NA	NA	NA	NA
23359:23374	attR	NA	NA	NA	NA
AXS06581.1\|24450_24666_-	hypothetical protein	NA	NA	NA	NA
AXS06582.1\|24662_24878_-	hypothetical protein	J9Q6I3	Salmonella_phage	8.5e-24	78.6
AXS06583.1\|24980_26303_-	putative DNA ligase	J9Q7G5	Salmonella_phage	4.8e-226	85.2
AXS06584.1\|26302_26770_-	hypothetical protein	J9Q7R9	Salmonella_phage	7.5e-49	63.9
AXS06585.1\|26849_27638_-	hypothetical protein	J9Q7Z0	Salmonella_phage	6.9e-71	51.1
AXS06586.1\|27926_29093_+	hypothetical protein	NA	NA	NA	NA
AXS06587.1\|29135_30254_-	DNA primase	J9Q720	Salmonella_phage	6.3e-203	91.6
AXS06588.1\|30406_31747_-	DNA helicase	J9Q7G4	Salmonella_phage	5.4e-241	96.0
AXS06589.1\|31811_32537_-	hypothetical protein	J9Q7R8	Salmonella_phage	9.6e-128	88.4
AXS06590.1\|32781_33567_+	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	1.8e-07	24.8
AXS06591.1\|33612_33975_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.5e-44	97.9
AXS06592.1\|33974_34640_-	plasmid stability protein	J9Q7R7	Salmonella_phage	2.9e-102	83.7
AXS06593.1\|34880_35402_+	hypothetical protein	NA	NA	NA	NA
AXS06594.1\|35456_35654_-	hypothetical protein	J9Q7G2	Salmonella_phage	6.4e-18	65.6
AXS06595.1\|35604_35856_-	hypothetical protein	J9Q7R6	Salmonella_phage	4.5e-24	73.5
AXS06596.1\|35858_36551_-	hypothetical protein	J9Q7Y7	Salmonella_phage	3.9e-118	88.3
AXS06597.1\|36564_36888_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
AXS06598.1\|36978_38424_-\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	1.0e-40	38.6
AXS06599.1\|38546_50681_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	3.1e-29	60.7
AXS06600.1\|50697_51309_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-76	72.1
AXS06601.1\|51296_52094_-\|tail	phage tail protein	J9Q7R4	Salmonella_phage	5.4e-140	85.3
AXS06602.1\|52086_52785_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.2e-122	87.4
AXS06603.1\|52871_53207_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	8.8e-52	85.5
AXS06604.1\|53250_57780_-\|tail	phage tail tape measure protein	J9Q712	Salmonella_phage	0.0e+00	70.0
AXS06605.1\|57787_58021_-	hypothetical protein	J9Q7F7	Salmonella_phage	3.4e-34	93.5
AXS06606.1\|58137_58455_-	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
AXS06607.1\|58516_59263_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	3.7e-106	83.0
AXS06608.1\|59330_59723_-	hypothetical protein	J9Q6D8	Salmonella_phage	2.2e-46	67.5
AXS06609.1\|59724_60198_-	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
AXS06610.1\|60188_60533_-	hypothetical protein	J9Q7F6	Salmonella_phage	7.4e-54	92.1
AXS06611.1\|60630_61464_-	hypothetical protein	J9Q7R2	Salmonella_phage	1.6e-131	84.1
AXS06612.1\|61463_61898_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.9e-63	84.0
AXS06613.1\|61945_62374_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	7.9e-29	71.6
AXS06614.1\|62452_63331_-\|capsid	phage major capsid protein	J9Q710	Salmonella_phage	4.7e-153	94.2
AXS06615.1\|63357_64257_-	hypothetical protein	J9Q7F4	Salmonella_phage	1.0e-123	82.6
AXS06616.1\|64279_65869_-	hypothetical protein	J9Q7R1	Salmonella_phage	2.3e-275	88.7
AXS06617.1\|65886_67143_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
AXS06618.1\|67145_67787_-	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
AXS06619.1\|67962_68229_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
AXS06620.1\|68238_69129_-	hypothetical protein	J9Q7I6	Salmonella_phage	5.4e-165	97.0
AXS06621.1\|69125_69677_-	hypothetical protein	NA	NA	NA	NA
AXS06622.1\|69666_70308_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	2.3e-109	97.2
AXS06623.1\|70304_70973_-	chromosome partitioning protein ParB	J9Q6L1	Salmonella_phage	6.6e-107	91.9
AXS06624.1\|70972_71653_-	chromosome partitioning protein ParB	J9Q756	Salmonella_phage	1.6e-108	89.7
AXS06625.1\|71736_73296_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	3.1e-280	93.1
AXS06626.1\|73298_73574_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.0e-26	68.1
AXS06627.1\|73624_74062_-	hypothetical protein	A0A1V0E8D6	Vibrio_phage	9.5e-14	37.0
AXS06628.1\|74217_74748_+	transcriptional regulator	J9Q6L0	Salmonella_phage	1.2e-71	84.5
AXS06673.1\|74880_75060_+	hypothetical protein	NA	NA	NA	NA
AXS06629.1\|75380_76031_+	hypothetical protein	J9Q754	Salmonella_phage	8.4e-107	91.7
AXS06630.1\|76081_76285_+	hypothetical protein	J9Q7I3	Salmonella_phage	4.1e-28	95.5
AXS06631.1\|76876_77359_-	hypothetical protein	J9Q805	Salmonella_phage	3.4e-65	71.2
AXS06632.1\|77564_77846_-	ABC transporter	J9Q753	Salmonella_phage	9.1e-42	83.9
AXS06633.1\|77972_78380_-	hypothetical protein	NA	NA	NA	NA
AXS06634.1\|78499_78811_-	hypothetical protein	J9Q7T7	Salmonella_phage	4.0e-30	66.0
AXS06635.1\|78947_79160_-	hypothetical protein	J9Q804	Salmonella_phage	1.7e-24	77.9
AXS06636.1\|79172_79391_-	hypothetical protein	J9Q6K7	Salmonella_phage	2.9e-27	81.9

DBSCAN-SWA_2

82505 : 109382

Salmonella_phage(89.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS06640.1\|82505_82823_-	hypothetical protein	J9Q750	Salmonella_phage	2.1e-42	73.3
AXS06641.1\|83183_84263_+	hypothetical protein	NA	NA	NA	NA
AXS06642.1\|84301_84511_-	hypothetical protein	NA	NA	NA	NA
AXS06643.1\|84551_84815_-	hypothetical protein	J9Q7T5	Salmonella_phage	4.8e-29	70.5
AXS06674.1\|84966_85668_-	hypothetical protein	J9Q6K2	Salmonella_phage	4.7e-79	70.2
AXS06644.1\|85756_87442_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	91.1
AXS06645.1\|87570_88149_-	hypothetical protein	J9Q7H6	Salmonella_phage	3.0e-55	57.0
AXS06646.1\|88276_88432_-	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	1.7e-05	61.2
AXS06647.1\|88431_88857_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	9.8e-56	80.9
AXS06648.1\|88958_89147_-	hypothetical protein	J9Q800	Salmonella_phage	2.2e-07	50.8
AXS06649.1\|89143_89422_-	hypothetical protein	NA	NA	NA	NA
AXS06650.1\|89853_90441_-	ribonuclease HI	J9Q745	Salmonella_phage	9.9e-91	80.1
AXS06651.1\|91005_91248_-	hypothetical protein	J9Q7H5	Salmonella_phage	2.8e-31	84.2
AXS06652.1\|91445_92039_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	1.3e-98	84.8
AXS06653.1\|92223_93057_-	hypothetical protein	J9Q7Z9	Salmonella_phage	1.0e-64	57.1
AXS06654.1\|93182_93740_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	1.4e-86	84.2
AXS06655.1\|93749_94169_-	hypothetical protein	J9Q743	Salmonella_phage	6.5e-52	74.1
AXS06656.1\|94232_94877_-	hypothetical protein	J9Q7H4	Salmonella_phage	5.2e-93	77.1
AXS06657.1\|94876_95353_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	2.4e-71	79.0
AXS06658.1\|95349_95763_-	hypothetical protein	J9Q7Z8	Salmonella_phage	2.3e-54	76.6
AXS06659.1\|95764_96868_-	thymidylate synthase	J9Q6J6	Salmonella_phage	2.5e-180	79.8
AXS06660.1\|97061_97937_-	phosphoribosyl-ATP pyrophosphohydrolase	J9Q742	Salmonella_phage	4.5e-140	84.7
AXS06661.1\|98013_99156_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	9.0e-213	95.8
AXS06662.1\|99287_101591_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	90.8
AXS06663.1\|101666_102236_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.4e-94	89.9
AXS06664.1\|102245_102992_-	hypothetical protein	J9Q6J5	Salmonella_phage	1.6e-77	59.7
AXS06665.1\|102981_104898_-	exonuclease	J9Q741	Salmonella_phage	3.3e-300	84.8
AXS06666.1\|104894_105128_-	hypothetical protein	J9Q7H1	Salmonella_phage	4.4e-18	66.1
AXS06667.1\|105127_106213_-	exonuclease SbcCD subunit D	J9Q7S9	Salmonella_phage	2.0e-182	84.2
AXS06668.1\|106864_108424_+	DUF4041 domain-containing protein	X5JAC1	Clostridium_phage	6.6e-57	52.3
AXS06669.1\|108737_109382_-	hypothetical protein	J9Q739	Salmonella_phage	8.3e-99	80.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031790

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5648 : 65943

Caulobacter_phage(21.43%)

bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS06379.1\|5648_6680_+\|transposase	IS630-like element ISEc33 family transposase	NA	NA	NA	NA
AXS06380.1\|7259_7817_+	OsmC family peroxiredoxin	NA	NA	NA	NA
AXS06381.1\|7958_8540_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AXS06382.1\|8544_8883_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
AXS06543.1\|8912_9242_-	thioredoxin	V9SJ74	Achromobacter_phage	9.7e-11	34.7
AXS06383.1\|9455_10562_+	alkene reductase	NA	NA	NA	NA
AXS06384.1\|10627_11329_+	DsbA family oxidoreductase	NA	NA	NA	NA
AXS06385.1\|11394_12168_+	SDR family oxidoreductase	NA	NA	NA	NA
AXS06386.1\|12353_13577_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
AXS06387.1\|13710_14580_-	DMT family transporter	NA	NA	NA	NA
AXS06388.1\|14820_15573_+	alpha/beta hydrolase	NA	NA	NA	NA
AXS06389.1\|16019_16334_-	hypothetical protein	NA	NA	NA	NA
AXS06390.1\|16363_16567_-	hypothetical protein	NA	NA	NA	NA
AXS06391.1\|17312_17525_+	hypothetical protein	NA	NA	NA	NA
AXS06392.1\|17618_17897_+	DUF1778 domain-containing protein	NA	NA	NA	NA
AXS06393.1\|18175_18433_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AXS06394.1\|18791_19523_+	peptidase	NA	NA	NA	NA
AXS06395.1\|19601_20762_-\|transposase	IS30-like element ISCfr4 family transposase	W5R8L2	Staphylococcus_phage	4.6e-39	36.4
AXS06396.1\|20872_21160_+	hypothetical protein	NA	NA	NA	NA
AXS06544.1\|21271_21508_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXS06397.1\|22420_23920_-	kinase	NA	NA	NA	NA
AXS06398.1\|23947_25681_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
AXS06545.1\|25680_26721_-	VWA domain-containing protein	NA	NA	NA	NA
AXS06399.1\|26813_27452_-	VWA domain-containing protein	NA	NA	NA	NA
AXS06400.1\|27452_28094_-	TerD family protein	A0A2P1N0C0	Streptomyces_phage	2.4e-05	25.1
AXS06401.1\|28118_28757_-	VWA domain-containing protein	NA	NA	NA	NA
AXS06402.1\|29236_29695_-	tellurium resistance protein TerW	NA	NA	NA	NA
AXS06403.1\|29697_30921_-	DUF4236 domain-containing protein	NA	NA	NA	NA
AXS06404.1\|30931_31888_-	citrate lyase subunit beta	NA	NA	NA	NA
AXS06405.1\|31887_32967_-	hypothetical protein	A0A172Q0S8	Acinetobacter_phage	1.1e-39	33.8
AXS06406.1\|32968_33742_-	hypothetical protein	NA	NA	NA	NA
AXS06546.1\|33734_34877_-	adenine/guanine phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	6.3e-33	28.2
AXS06407.1\|34888_35947_-	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA
AXS06408.1\|36258_36843_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	1.8e-12	29.9
AXS06409.1\|36839_37991_+	tellurium resistance protein TerA	NA	NA	NA	NA
AXS06410.1\|38013_38469_+	Tellurium resistance protein TerB	NA	NA	NA	NA
AXS06411.1\|38492_39533_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	1.8e-71	46.5
AXS06412.1\|39571_40150_+	TerD family protein	K4JRX3	Caulobacter_phage	5.5e-33	40.3
AXS06413.1\|40236_40812_+	TerD family protein	K4JRX3	Caulobacter_phage	9.6e-30	42.6
AXS06414.1\|40896_42138_+	tellurium resistance protein TerF	A0A2D1GNA9	Pseudoalteromonas_phage	4.8e-10	25.1
AXS06415.1\|42473_43121_-	HAD-IB family hydrolase	NA	NA	NA	NA
AXS06547.1\|43567_45019_-	hypothetical protein	NA	NA	NA	NA
AXS06416.1\|45018_45864_-	hypothetical protein	NA	NA	NA	NA
AXS06417.1\|45991_46141_-	hypothetical protein	NA	NA	NA	NA
AXS06418.1\|46767_47160_-	hypothetical protein	NA	NA	NA	NA
AXS06548.1\|47224_47983_-	hypothetical protein	NA	NA	NA	NA
AXS06419.1\|48218_48950_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
AXS06420.1\|49204_49810_-	hypothetical protein	NA	NA	NA	NA
AXS06421.1\|51192_52303_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-47	40.1
AXS06422.1\|52670_53513_-	hypothetical protein	NA	NA	NA	NA
AXS06423.1\|53703_54699_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	9.1e-20	28.3
AXS06424.1\|56150_57278_+	regulator	NA	NA	NA	NA
AXS06425.1\|57274_57868_+	ANTAR domain-containing protein	NA	NA	NA	NA
AXS06426.1\|57864_58713_+	ABC transporter permease	NA	NA	NA	NA
AXS06427.1\|58712_59633_+	ABC transporter permease	NA	NA	NA	NA
AXS06428.1\|59645_61250_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXS06429.1\|61294_62242_+	acetamidase	A0A1V0S8X7	Catovirus	9.6e-11	22.7
AXS06430.1\|62249_63983_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	29.6
AXS06431.1\|64911_65943_+\|transposase	IS630-like element ISEc33 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP031789

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP031789_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031789_1

4109548-4109687

Orphan

Consensus_repeat	Method
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031789_1

>merge|CP031789|1|4109548-4109687|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCCAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAGCCGAAGCAGCAG

>CP031789|1|1|4109548-4109687|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCGGCCAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAGCCGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP031789.1\|AXS05226.1\|4113189_4114428_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
CP031789.1\|AXS05215.1\|4103395_4104640_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
CP031789.1\|AXS05225.1\|4112402_4113197_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
CP031789.1\|AXS05230.1\|4116897_4117665_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP031789.1\|AXS05216.1\|4104745_4105204_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP031789.1\|AXS05222.1\|4109932_4111156_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
CP031789.1\|AXS05213.1\|4102161_4102854_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
CP031789.1\|AXS05223.1\|4111168_4111765_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
CP031789.1\|AXS05211.1\|4099282_4100566_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
CP031789.1\|AXS05217.1\|4105461_4106919_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP031789.1\|AXS05221.1\|4109714_4109933_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
CP031789.1\|AXS05218.1\|4106961_4107414_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP031789.1\|AXS05227.1\|4114431_4115775_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	unknown	unknown	gnl\|CDD\|235426
CP031789.1\|AXS05224.1\|4111771_4112410_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
CP031789.1\|AXS05219.1\|4107416_4108472_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP031789.1\|AXS05228.1\|4115731_4115941_+\|hypothetical-protein	unknown	unknown	unknown
CP031789.1\|AXS05220.1\|4108631_4109492_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
CP031789.1\|AXS05229.1\|4116186_4116927_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577
CP031789.1\|AXS05214.1\|4102939_4103338_-\|Crl-family-RNA-polymerase-assembly-factor	unknown	unknown	gnl\|CDD\|182882
CP031789.1\|AXS05212.1\|4100715_4102116_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297

Protein	Function_ID	Function_description	E-value
CP031789.1\|AXS05226.1\|4113189_4114428_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
CP031789.1\|AXS05215.1\|4103395_4104640_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP031789.1\|AXS05225.1\|4112402_4113197_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
CP031789.1\|AXS05230.1\|4116897_4117665_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
CP031789.1\|AXS05216.1\|4104745_4105204_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
CP031789.1\|AXS05222.1\|4109932_4111156_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
CP031789.1\|AXS05213.1\|4102161_4102854_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	2.66819e-151
CP031789.1\|AXS05223.1\|4111168_4111765_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	3.0148e-127
CP031789.1\|AXS05211.1\|4099282_4100566_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
CP031789.1\|AXS05217.1\|4105461_4106919_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP031789.1\|AXS05221.1\|4109714_4109933_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	7.19388e-29
CP031789.1\|AXS05218.1\|4106961_4107414_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.92264e-85
CP031789.1\|AXS05227.1\|4114431_4115775_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
CP031789.1\|AXS05224.1\|4111771_4112410_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
CP031789.1\|AXS05219.1\|4107416_4108472_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP031789.1\|AXS05220.1\|4108631_4109492_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	6.30985e-129
CP031789.1\|AXS05229.1\|4116186_4116927_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
CP031789.1\|AXS05214.1\|4102939_4103338_-\|Crl-family-RNA-polymerase-assembly-factor	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	2.69204e-83
CP031789.1\|AXS05212.1\|4100715_4102116_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0

>CP031789.1|AXS05220.1|4108631_4109492_+|glycerophosphodiester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGGDNHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMVDSPAQAKSWQ
>CP031789.1|AXS05219.1|4107416_4108472_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>CP031789.1|AXS05218.1|4106961_4107414_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>CP031789.1|AXS05217.1|4105461_4106919_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>CP031789.1|AXS05216.1|4104745_4105204_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>CP031789.1|AXS05215.1|4103395_4104640_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>CP031789.1|AXS05214.1|4102939_4103338_-|Crl-family-RNA-polymerase-assembly-factor
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIDDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>CP031789.1|AXS05213.1|4102161_4102854_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>CP031789.1|AXS05212.1|4100715_4102116_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>CP031789.1|AXS05211.1|4099282_4100566_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNKAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQIVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPVFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDHSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>CP031789.1|AXS05221.1|4109714_4109933_-|(Na+)-NQR-maturation-NqrM
MMLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>CP031789.1|AXS05222.1|4109932_4111156_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>CP031789.1|AXS05223.1|4111168_4111765_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MTHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>CP031789.1|AXS05224.1|4111771_4112410_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>CP031789.1|AXS05225.1|4112402_4113197_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>CP031789.1|AXS05226.1|4113189_4114428_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYLTVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>CP031789.1|AXS05227.1|4114431_4115775_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>CP031789.1|AXS05228.1|4115731_4115941_+|hypothetical-protein
MPAMGKSSPFVILIISLAGIRNLNPDAGQGQLIDRMAEKKGRNGASSAQDGREASFLTLMMNRRKCNIS
>CP031789.1|AXS05229.1|4116186_4116927_+|transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>CP031789.1|AXS05230.1|4116897_4117665_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV

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Crispr_ID: CP031789_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031789_2

4326503-4326597

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031789_2

>merge|CP031789|2|4326503-4326597|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP031789|2|2|4326503-4326597|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP031789.1\|AXS05398.1\|4317261_4317957_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP031789.1\|AXS05404.1\|4326738_4328364_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP031789.1\|AXS05399.1\|4318132_4320490_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP031789.1\|AXS05400.1\|4320677_4323584_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP031789.1\|AXS05410.1\|4334836_4335658_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP031789.1\|AXS05411.1\|4335660_4336038_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP031789.1\|AXS05403.1\|4325049_4326414_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP031789.1\|AXS05412.1\|4336042_4336891_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP031789.1\|AXS05408.1\|4332558_4333845_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP031789.1\|AXS05407.1\|4330155_4332504_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP031789.1\|AXS05402.1\|4324330_4324870_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP031789.1\|AXS05405.1\|4328353_4329052_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP031789.1\|AXS06340.1\|4324832_4325021_+\|hypothetical-protein	unknown	unknown	unknown
CP031789.1\|AXS05406.1\|4329084_4329912_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP031789.1\|AXS05401.1\|4323596_4324256_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP031789.1\|AXS06341.1\|4336843_4337047_-\|hypothetical-protein	unknown	unknown	unknown
CP031789.1\|AXS05396.1\|4313901_4315611_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP031789.1\|AXS05409.1\|4333850_4334840_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP031789.1\|AXS05397.1\|4315621_4317124_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP031789.1\|AXS05395.1\|4312718_4313564_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717

Protein	Function_ID	Function_description	E-value
CP031789.1\|AXS05398.1\|4317261_4317957_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP031789.1\|AXS05404.1\|4326738_4328364_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
CP031789.1\|AXS05399.1\|4318132_4320490_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP031789.1\|AXS05400.1\|4320677_4323584_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP031789.1\|AXS05410.1\|4334836_4335658_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP031789.1\|AXS05411.1\|4335660_4336038_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP031789.1\|AXS05403.1\|4325049_4326414_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP031789.1\|AXS05412.1\|4336042_4336891_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP031789.1\|AXS05408.1\|4332558_4333845_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP031789.1\|AXS05407.1\|4330155_4332504_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP031789.1\|AXS05402.1\|4324330_4324870_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
CP031789.1\|AXS05405.1\|4328353_4329052_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.09413e-65
CP031789.1\|AXS05406.1\|4329084_4329912_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
CP031789.1\|AXS05401.1\|4323596_4324256_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
CP031789.1\|AXS05396.1\|4313901_4315611_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP031789.1\|AXS05409.1\|4333850_4334840_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP031789.1\|AXS05397.1\|4315621_4317124_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP031789.1\|AXS05395.1\|4312718_4313564_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0

>CP031789.1|AXS05403.1|4325049_4326414_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP031789.1|AXS06340.1|4324832_4325021_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>CP031789.1|AXS05402.1|4324330_4324870_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP031789.1|AXS05401.1|4323596_4324256_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP031789.1|AXS05400.1|4320677_4323584_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP031789.1|AXS05399.1|4318132_4320490_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP031789.1|AXS05398.1|4317261_4317957_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP031789.1|AXS05397.1|4315621_4317124_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP031789.1|AXS05396.1|4313901_4315611_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP031789.1|AXS05395.1|4312718_4313564_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP031789.1|AXS05404.1|4326738_4328364_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>CP031789.1|AXS05405.1|4328353_4329052_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLNATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSGREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP031789.1|AXS05406.1|4329084_4329912_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP031789.1|AXS05407.1|4330155_4332504_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP031789.1|AXS05408.1|4332558_4333845_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP031789.1|AXS05409.1|4333850_4334840_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP031789.1|AXS05410.1|4334836_4335658_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP031789.1|AXS05411.1|4335660_4336038_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP031789.1|AXS05412.1|4336042_4336891_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP031789.1|AXS06341.1|4336843_4337047_-|hypothetical-protein
MFPIAGFVFFLKRSPERQIAHKRRSGKALATTRQNDAAGSPDKAQRAAIREESGRDGFAFVEAFLPV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1624375 : 1631280

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS06217.1\|1624375_1625239_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
AXS02945.1\|1625249_1626023_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
AXS06218.1\|1626263_1627157_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
AXS02946.1\|1627402_1628764_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
AXS02947.1\|1629082_1629805_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AXS02948.1\|1629801_1631280_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_2

2640817 : 2651704

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS03879.1\|2640817_2643925_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.4
AXS03880.1\|2643979_2645245_+	MFS transporter	NA	NA	NA	NA
AXS03881.1\|2645275_2646364_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
AXS03882.1\|2646450_2646711_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
AXS03883.1\|2647008_2647869_+	class A extended-spectrum beta-lactamase SHV-27	A0A077SL40	Escherichia_phage	2.9e-155	99.3
AXS03884.1\|2647889_2648651_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AXS03885.1\|2648911_2649814_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
AXS03886.1\|2649825_2651091_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	5.1e-233	99.3
AXS03887.1\|2651083_2651704_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_3

2918819 : 2930279

Klebsiella_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS04126.1\|2918819_2919497_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	2.2e-81	61.2
AXS04127.1\|2919665_2920598_-	hypothetical protein	NA	NA	NA	NA
AXS04128.1\|2920849_2922115_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.9e-209	83.6
AXS04129.1\|2922116_2922536_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	58.3
AXS04130.1\|2923085_2923508_-	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	44.5
AXS04131.1\|2923558_2924137_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	4.7e-93	97.3
AXS04132.1\|2924229_2927157_+	SGNH/GDSL hydrolase family protein	A0A286S1P0	Klebsiella_phage	2.0e-38	62.8
AXS06278.1\|2927310_2927931_-	hypothetical protein	NA	NA	NA	NA
AXS04133.1\|2928077_2930279_-	hypothetical protein	B5TAB2	Burkholderia_phage	1.3e-98	45.5

DBSCAN-SWA_4

2938515 : 2958729

Pseudomonas_phage(21.43%)

terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS04140.1\|2938515_2939514_-	hypothetical protein	J7I0T4	Pseudomonas_phage	3.5e-11	31.8
AXS04141.1\|2939518_2939686_-	hypothetical protein	NA	NA	NA	NA
AXS04142.1\|2939853_2940336_-	hypothetical protein	NA	NA	NA	NA
AXS04143.1\|2940390_2941563_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.6e-23	27.0
AXS04144.1\|2941586_2941979_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AXS04145.1\|2941975_2942527_-	hypothetical protein	G8C7Q1	Escherichia_phage	7.8e-29	39.9
AXS04146.1\|2942528_2942912_-	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	2.9e-22	46.0
AXS04147.1\|2942898_2943132_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
AXS04148.1\|2943141_2943396_-	hypothetical protein	J9Q7U0	Salmonella_phage	8.0e-21	52.4
AXS04149.1\|2943397_2943793_-	protein singed	A0A0S2SYB7	Pseudomonas_phage	3.3e-13	43.3
AXS04150.1\|2944114_2945068_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
AXS04151.1\|2945078_2945864_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.0e-66	63.9
AXS04152.1\|2945948_2947061_-	hypothetical protein	I6PD76	Cronobacter_phage	6.2e-110	54.9
AXS04153.1\|2947044_2948445_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	4.1e-127	53.5
AXS04154.1\|2948444_2949752_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.4e-148	58.7
AXS04155.1\|2949729_2950734_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
AXS04156.1\|2951082_2951328_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.2e-35	97.5
AXS04157.1\|2951731_2951926_-	hypothetical protein	A0A1L6Z528	Klebsiella_phage	3.3e-19	73.3
AXS04158.1\|2951998_2952220_-	DNA gyrase subunit B	NA	NA	NA	NA
AXS04159.1\|2952328_2952526_-	hypothetical protein	NA	NA	NA	NA
AXS04160.1\|2952674_2952968_-	hypothetical protein	G8C7W3	Escherichia_phage	4.4e-31	71.1
AXS04161.1\|2952964_2953159_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	2.2e-26	90.6
AXS04162.1\|2953109_2953385_-	hypothetical protein	G8C7W1	Escherichia_phage	1.4e-07	39.3
AXS04163.1\|2953387_2954017_-	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	9.3e-87	74.4
AXS04164.1\|2954016_2954298_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.4e-18	47.3
AXS04165.1\|2954284_2954671_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	1.6e-57	90.6
AXS04166.1\|2954777_2954975_-	hypothetical protein	NA	NA	NA	NA
AXS04167.1\|2955364_2956186_-	antitermination protein	K7PKS8	Enterobacteria_phage	4.0e-98	67.1
AXS04168.1\|2956301_2956658_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.5e-41	64.1
AXS04169.1\|2956654_2956951_-	DUF1364 family protein	A0A0U2KD41	Escherichia_phage	5.1e-35	70.8
AXS04170.1\|2956953_2957160_-	hypothetical protein	H6WRY8	Salmonella_phage	3.4e-22	69.7
AXS04171.1\|2957159_2957759_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	4.5e-91	80.4
AXS04172.1\|2957816_2958038_-	hypothetical protein	NA	NA	NA	NA
AXS04173.1\|2958116_2958350_-	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	4.9e-25	68.8
AXS04174.1\|2958498_2958729_-	hypothetical protein	K7PJT8	Enterobacteria_phage	3.6e-20	72.1

DBSCAN-SWA_5

2962161 : 2976037

Enterobacteria_phage(53.85%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS04178.1\|2962161_2962425_-	hypothetical protein	H9C169	Pectobacterium_phage	8.0e-08	39.7
AXS04179.1\|2962421_2962724_-	MarR family transcriptional regulator	NA	NA	NA	NA
AXS04180.1\|2962720_2963458_-	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	4.5e-64	54.8
AXS06279.1\|2963454_2964312_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	4.7e-89	63.7
AXS04181.1\|2964720_2965257_-	hypothetical protein	M9NZI6	Enterobacteria_phage	4.1e-59	67.8
AXS04182.1\|2965259_2965523_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXS04183.1\|2965619_2965976_+	hypothetical protein	NA	NA	NA	NA
AXS04184.1\|2966202_2966511_+	hypothetical protein	G8C7T6	Escherichia_phage	1.7e-25	62.2
AXS04185.1\|2966602_2966701_+	hypothetical protein	NA	NA	NA	NA
AXS04186.1\|2966807_2966999_+	DUF1482 family protein	NA	NA	NA	NA
AXS04187.1\|2967007_2967163_+	hypothetical protein	K7PGY4	Enterobacteria_phage	1.5e-14	71.2
AXS04188.1\|2967300_2970357_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	3.4e-291	56.6
AXS04189.1\|2970369_2971479_+	enterohemolysin	H6WRX0	Salmonella_phage	1.0e-184	86.7
AXS04190.1\|2971519_2971759_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	6.8e-22	67.5
AXS04191.1\|2971768_2972083_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
AXS04192.1\|2971979_2973167_-	DUF4102 domain-containing protein	K7PGY1	Enterobacteria_phage	5.4e-120	52.2
AXS04193.1\|2973343_2974234_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
AXS04194.1\|2974233_2975226_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
AXS04195.1\|2975227_2976037_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9

DBSCAN-SWA_6

3359656 : 3369119

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS04552.1\|3359656_3361378_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.2e-14	34.3
AXS06294.1\|3361422_3362124_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AXS04553.1\|3362477_3362696_+	translation initiation factor IF-1	NA	NA	NA	NA
AXS04554.1\|3362815_3365095_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AXS04555.1\|3365125_3365443_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AXS04556.1\|3365768_3365990_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AXS04557.1\|3365923_3366127_-	hypothetical protein	NA	NA	NA	NA
AXS04558.1\|3366066_3368007_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
AXS04559.1\|3368003_3369119_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031791

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031790

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP031789

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection