CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031838	Staphylococcus aureus strain QD-CD9 chromosome, complete genome	3 crisprs	csa3,DEDDh,cas3,DinG	2	3	14	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031838_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031838_3

646651-646741

Orphan

Consensus_repeat	Method
AAGAAGCCCCTAACAACTAAAGTTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP031838_3

>merge|CP031838|3|646651-646741|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTGAAAAATAGAGGAACACAGTTGGATGCTACGCATCAACTGCATAAGAGCCCCTAACAACTAAAGTTG

>CP031838|3|2|646651-646741|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTG	AAAAATAGAGGAACACAGTTGGATGCTACGCATCAACTGCA
TAAGAGCCCCTAACAACTAAAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP031838.1\|AXS23582.1\|650669_651608_+\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
CP031838.1\|AXS23580.1\|649096_649417_-\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP031838.1\|AXS23571.1\|640971_642777_+\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP031838.1\|AXS23568.1\|636139_636574_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP031838.1\|AXS23573.1\|643858_644716_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
CP031838.1\|AXS23570.1\|638752_640291_-\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
CP031838.1\|AXS23585.1\|654370_654784_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
CP031838.1\|AXS23574.1\|644845_644938_-\|erm-Leader-peptide	unknown	unknown	unknown
CP031838.1\|AXS23569.1\|636585_638718_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP031838.1\|AXS23581.1\|649568_650234_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
CP031838.1\|AXS23575.1\|645373_645532_-\|integrase	unknown	unknown	unknown
CP031838.1\|AXS23587.1\|655547_656258_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP031838.1\|AXS23583.1\|651638_651869_+\|hypothetical-protein	unknown	unknown	unknown
CP031838.1\|AXS23572.1\|643008_643791_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP031838.1\|AXS23586.1\|654983_655427_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
CP031838.1\|AXS23579.1\|648114_649095_-\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
CP031838.1\|AXS23577.1\|646211_646316_+\|hypothetical-protein	unknown	unknown	unknown
CP031838.1\|AXS23576.1\|645596_645779_+\|hypothetical-protein	unknown	unknown	unknown
CP031838.1\|AXS23578.1\|646757_647849_-\|transcriptional-regulator	unknown	unknown	unknown
CP031838.1\|AXS23584.1\|652540_653914_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640

Protein	Function_ID	Function_description	E-value
CP031838.1\|AXS23579.1\|648114_649095_-\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.20197e-108
CP031838.1\|AXS23580.1\|649096_649417_-\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP031838.1\|AXS23570.1\|638752_640291_-\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP031838.1\|AXS23568.1\|636139_636574_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP031838.1\|AXS23569.1\|636585_638718_-\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.17174e-68
CP031838.1\|AXS23581.1\|649568_650234_+\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP031838.1\|AXS23571.1\|640971_642777_+\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP031838.1\|AXS23587.1\|655547_656258_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP031838.1\|AXS23584.1\|652540_653914_+\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
CP031838.1\|AXS23572.1\|643008_643791_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.03129e-105
CP031838.1\|AXS23586.1\|654983_655427_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP031838.1\|AXS23582.1\|650669_651608_+\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP031838.1\|AXS23573.1\|643858_644716_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.00207e-59
CP031838.1\|AXS23585.1\|654370_654784_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	7.90322e-46

>CP031838.1|AXS23577.1|646211_646316_+|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>CP031838.1|AXS23576.1|645596_645779_+|hypothetical-protein
MIIFRFKVNAFFPVKLCLMIRFCLESCCIFRRHLLITFHNIRSKFIMFKYISSKCIICTG
>CP031838.1|AXS23575.1|645373_645532_-|integrase
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP031838.1|AXS23574.1|644845_644938_-|erm-Leader-peptide
MTYGSIVAILCALFVIFFIPYMEKKDKKKK
>CP031838.1|AXS23573.1|643858_644716_+|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITTFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP031838.1|AXS23572.1|643008_643791_+|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDEEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARELLLSILDSLSDSYPMLAMIYVTHFIEEITSNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP031838.1|AXS23571.1|640971_642777_+|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP031838.1|AXS23570.1|638752_640291_-|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP031838.1|AXS23569.1|636585_638718_-|PRD-domain-containing-protein
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP031838.1|AXS23568.1|636139_636574_-|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP031838.1|AXS23578.1|646757_647849_-|transcriptional-regulator
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANSQLAKYVQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKETTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP031838.1|AXS23579.1|648114_649095_-|cation-transporter
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHAH
>CP031838.1|AXS23580.1|649096_649417_-|ArsR-family-transcriptional-regulator
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP031838.1|AXS23581.1|649568_650234_+|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP031838.1|AXS23582.1|650669_651608_+|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP031838.1|AXS23583.1|651638_651869_+|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP031838.1|AXS23584.1|652540_653914_+|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP031838.1|AXS23585.1|654370_654784_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MTIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP031838.1|AXS23586.1|654983_655427_+|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP031838.1|AXS23587.1|655547_656258_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Crispr_ID: CP031838_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031838_5

1178825-1178912

Orphan

Consensus_repeat	Method
TGGGGCCCCAACACAGAAGCTGACGAAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031838_5

>merge|CP031838|5|1178825-1178912|CRISPRCasFinder
TGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAAGCTGACGAAAAG

>CP031838|5|4|1178825-1178912|CRISPRCasFinder
TGGGGCCCCAACACAGAAGCTGACGAAAAG	TCAGCTTACTATAATGTGCAAGTTGGGG
TGGGGCCCCAACATAGAAGCTGACGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP031838.1\|AXS25690.1\|1189047_1189731_+\|serine-protease	unknown	unknown	gnl\|CDD\|223961
CP031838.1\|AXS24072.1\|1180474_1181452_+\|HrcA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273017
CP031838.1\|AXS24069.1\|1176266_1176518_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP031838.1\|AXS24070.1\|1176863_1178687_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
CP031838.1\|AXS24062.1\|1170048_1170633_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
CP031838.1\|AXS24075.1\|1184146_1185286_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP031838.1\|AXS24065.1\|1171745_1172432_+\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224472
CP031838.1\|AXS24074.1\|1182178_1184011_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
CP031838.1\|AXS24078.1\|1186988_1188335_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP031838.1\|AXS24071.1\|1179249_1180374_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
CP031838.1\|AXS24066.1\|1172523_1172985_+\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
CP031838.1\|AXS24061.1\|1169489_1170059_+\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP031838.1\|AXS24067.1\|1173043_1175191_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
CP031838.1\|AXS24068.1\|1175247_1176222_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
CP031838.1\|AXS24073.1\|1181483_1182110_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622
CP031838.1\|AXS24079.1\|1188627_1188804_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP031838.1\|AXS24064.1\|1170989_1171706_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP031838.1\|AXS24077.1\|1186229_1186982_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
CP031838.1\|AXS24063.1\|1170633_1170987_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
CP031838.1\|AXS24076.1\|1185289_1186228_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886

Protein	Function_ID	Function_description	E-value
CP031838.1\|AXS25690.1\|1189047_1189731_+\|serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	8.78003e-63
CP031838.1\|AXS24072.1\|1180474_1181452_+\|HrcA-family-transcriptional-regulator	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP031838.1\|AXS24069.1\|1176266_1176518_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP031838.1\|AXS24070.1\|1176863_1178687_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP031838.1\|AXS24062.1\|1170048_1170633_+\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	8.54529e-80
CP031838.1\|AXS24075.1\|1184146_1185286_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP031838.1\|AXS24065.1\|1171745_1172432_+\|ComEA-family-DNA-binding-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	2.53337e-32
CP031838.1\|AXS24074.1\|1182178_1184011_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP031838.1\|AXS24078.1\|1186988_1188335_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP031838.1\|AXS24071.1\|1179249_1180374_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP031838.1\|AXS24066.1\|1172523_1172985_+\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	4.81051e-102
CP031838.1\|AXS24061.1\|1169489_1170059_+\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	1.98239e-76
CP031838.1\|AXS24067.1\|1173043_1175191_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	1.36441e-90
CP031838.1\|AXS24068.1\|1175247_1176222_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	3.41932e-104
CP031838.1\|AXS24073.1\|1181483_1182110_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP031838.1\|AXS24079.1\|1188627_1188804_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP031838.1\|AXS24064.1\|1170989_1171706_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.00559e-15
CP031838.1\|AXS24077.1\|1186229_1186982_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.46402e-91
CP031838.1\|AXS24063.1\|1170633_1170987_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP031838.1\|AXS24076.1\|1185289_1186228_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134

>CP031838.1|AXS24070.1|1176863_1178687_+|elongation-factor-4
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELMPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP031838.1|AXS24069.1|1176266_1176518_-|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP031838.1|AXS24068.1|1175247_1176222_+|DNA-polymerase-III-subunit-delta
MGDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP031838.1|AXS24067.1|1173043_1175191_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MLSTFLFILLLYIAYRKNKIVYAPTSLFLIIFSSWYLHYSQQAIFNYINYIERTSQFNERAQVIQIQRQDSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP031838.1|AXS24066.1|1172523_1172985_+|ComE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP031838.1|AXS24065.1|1171745_1172432_+|ComEA-family-DNA-binding-protein
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT
>CP031838.1|AXS24064.1|1170989_1171706_+|class-I-SAM-dependent-methyltransferase
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESKILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDAERLFFIAKK
>CP031838.1|AXS24063.1|1170633_1170987_+|ribosome-silencing-factor
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP031838.1|AXS24062.1|1170048_1170633_+|HD-domain-containing-protein
MNIEKAKRLAKEKLPEKRYNHSLRVSETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP031838.1|AXS24061.1|1169489_1170059_+|nicotinate-nicotinamide-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH
>CP031838.1|AXS24071.1|1179249_1180374_+|oxygen-independent-coproporphyrinogen-III-oxidase
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP031838.1|AXS24072.1|1180474_1181452_+|HrcA-family-transcriptional-regulator
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP031838.1|AXS24073.1|1181483_1182110_+|nucleotide-exchange-factor-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP031838.1|AXS24074.1|1182178_1184011_+|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP031838.1|AXS24075.1|1184146_1185286_+|molecular-chaperone-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP031838.1|AXS24076.1|1185289_1186228_+|50S-ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP031838.1|AXS24077.1|1186229_1186982_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP031838.1|AXS24078.1|1186988_1188335_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP031838.1|AXS24079.1|1188627_1188804_+|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP031838.1|AXS25690.1|1189047_1189731_+|serine-protease
MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD

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Crispr_ID: CP031838_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031838_6

2177915-2178008

Orphan

Consensus_repeat	Method
GGCTTTTATGCAGTTGCTGCACAAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031838_6

>merge|CP031838|6|2177915-2178008|CRISPRCasFinder
GGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGGGCTCTTATGCAGTTGCTGCACAAACAA

>CP031838|6|5|2177915-2178008|CRISPRCasFinder
GGCTTTTATGCAGTTGCTGCACAAACAA	CTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGG
GGCTCTTATGCAGTTGCTGCACAAACAA

Protein	Signature genes	Signature genes Name	Protein_function
CP031838.1\|AXS25051.1\|2185416_2185953_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
CP031838.1\|AXS25045.1\|2175047_2175767_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
CP031838.1\|AXS25052.1\|2186163_2187102_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
CP031838.1\|AXS25043.1\|2173621_2174128_-\|hypothetical-protein	unknown	unknown	unknown
CP031838.1\|AXS25042.1\|2172743_2173460_-\|hypothetical-protein	unknown	unknown	unknown
CP031838.1\|AXS25715.1\|2180686_2181070_-\|DUF1934-family-protein	unknown	unknown	gnl\|CDD\|226896
CP031838.1\|AXS25713.1\|2175821_2176772_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP031838.1\|AXS25038.1\|2168866_2169091_+\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
CP031838.1\|AXS25053.1\|2187371_2187998_-\|DUF443-domain-containing-protein	unknown	unknown	gnl\|CDD\|335700
CP031838.1\|AXS25047.1\|2179028_2180690_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
CP031838.1\|AXS25044.1\|2174263_2175064_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP031838.1\|AXS25716.1\|2182887_2183409_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378039
CP031838.1\|AXS25039.1\|2169284_2170214_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|225778
CP031838.1\|AXS25046.1\|2178123_2178759_-\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
CP031838.1\|AXS25714.1\|2176919_2177747_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
CP031838.1\|AXS25041.1\|2171786_2172575_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP031838.1\|AXS25049.1\|2183436_2184732_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
CP031838.1\|AXS25048.1\|2181378_2182389_-\|zinc-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|181842
CP031838.1\|AXS25050.1\|2184771_2185248_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP031838.1\|AXS25040.1\|2171161_2171536_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944

Protein	Function_ID	Function_description	E-value
CP031838.1\|AXS25051.1\|2185416_2185953_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
CP031838.1\|AXS25045.1\|2175047_2175767_-\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
CP031838.1\|AXS25052.1\|2186163_2187102_-\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	1.82718e-167
CP031838.1\|AXS25714.1\|2176919_2177747_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.43637e-72
CP031838.1\|AXS25715.1\|2180686_2181070_-\|DUF1934-family-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	9.50091e-54
CP031838.1\|AXS25713.1\|2175821_2176772_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	4.26015e-48
CP031838.1\|AXS25038.1\|2168866_2169091_+\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	5.21775e-14
CP031838.1\|AXS25053.1\|2187371_2187998_-\|DUF443-domain-containing-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	4.44435e-60
CP031838.1\|AXS25044.1\|2174263_2175064_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.17592e-26
CP031838.1\|AXS25716.1\|2182887_2183409_-\|hypothetical-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	8.7406e-98
CP031838.1\|AXS25039.1\|2169284_2170214_+\|DMT-family-transporter	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	4.98621e-36
CP031838.1\|AXS25046.1\|2178123_2178759_-\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	9.55275e-93
CP031838.1\|AXS25047.1\|2179028_2180690_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
CP031838.1\|AXS25041.1\|2171786_2172575_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.55978e-34
CP031838.1\|AXS25049.1\|2183436_2184732_-\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	3.86139e-150
CP031838.1\|AXS25048.1\|2181378_2182389_-\|zinc-dependent-alcohol-dehydrogenase	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
CP031838.1\|AXS25050.1\|2184771_2185248_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
CP031838.1\|AXS25040.1\|2171161_2171536_+\|transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26

>CP031838.1|AXS25714.1|2176919_2177747_-|ABC-transporter-substrate-binding-protein
MKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGAFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>CP031838.1|AXS25713.1|2175821_2176772_-|iron-ABC-transporter-permease
MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAIIFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>CP031838.1|AXS25045.1|2175047_2175767_-|HAD-family-hydrolase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>CP031838.1|AXS25044.1|2174263_2175064_-|alpha/beta-hydrolase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLTLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTAAFINKHHDEKHV
>CP031838.1|AXS25043.1|2173621_2174128_-|hypothetical-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>CP031838.1|AXS25042.1|2172743_2173460_-|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>CP031838.1|AXS25041.1|2171786_2172575_-|alpha/beta-hydrolase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLKFLKSVS
>CP031838.1|AXS25040.1|2171161_2171536_+|transcriptional-regulator
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>CP031838.1|AXS25039.1|2169284_2170214_+|DMT-family-transporter
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPKVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTLGLFGATIHDFNLIKAIGVLLLIIGIVIMNQFNKNNLLLTDQKYLLFWLLLGYIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF
>CP031838.1|AXS25038.1|2168866_2169091_+|DUF2922-domain-containing-protein
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVVRDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK
>CP031838.1|AXS25046.1|2178123_2178759_-|endonuclease-III-domain-containing-protein
MLGTDELYKLLYRHMGPQNWWPADNDIELMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>CP031838.1|AXS25047.1|2179028_2180690_-|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>CP031838.1|AXS25715.1|2180686_2181070_-|DUF1934-family-protein
MLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>CP031838.1|AXS25048.1|2181378_2182389_-|zinc-dependent-alcohol-dehydrogenase
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>CP031838.1|AXS25716.1|2182887_2183409_-|hypothetical-protein
MEVISLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>CP031838.1|AXS25049.1|2183436_2184732_-|HD-domain-containing-protein
MTNAFVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINKLN
>CP031838.1|AXS25050.1|2184771_2185248_-|GNAT-family-N-acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>CP031838.1|AXS25051.1|2185416_2185953_-|flavodoxin-family-protein
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>CP031838.1|AXS25052.1|2186163_2187102_-|aldo/keto-reductase
MKQFVNLGKSDVEVLPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDDNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFIPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVIENIKAADIVLSDDEIQYIDELFPIED
>CP031838.1|AXS25053.1|2187371_2187998_-|DUF443-domain-containing-protein
MLLCESKIINKNPKYRIIKYNDEYLMVDIISTWISLFFPFINWFIPKEYVKISREEFENLNIVKPAKKNVFWPVAGSSALLGVALRKYTHLLDIQLDKKLVIAICCITFIGILIFYVRLIKKSSLNIYNTKNKRSKIFLIPTLKNVCFTLFGYILFGGLTMLFLDALLSMSYQNIIVYFVWIAVIMGFFLVNIALIIDKNIHVILKNQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031838_5	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	CP031838.1	837978-838005	1	0.964
CP031838_5	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	CP031838.1	848671-848698	1	0.964
CP031838_5	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	CP031838.1	1358076-1358103	1	0.964
CP031838_5	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	CP031838.1	1577142-1577169	1	0.964
CP031838_5	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	CP031838.1	1660951-1660978	1	0.964
CP031838_5	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	CP031838.1	1762967-1762994	1	0.964
CP031838_5	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	CP031838.1	1923251-1923278	1	0.964
CP031838_5	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	CP031838.1	2006646-2006673	1	0.964
CP031838_5	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	CP031838.1	2015362-2015389	1	0.964
CP031838_5	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	CP031838.1	2474956-2474983	1	0.964
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	337786-337810	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	337844-337868	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	337902-337926	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	545641-545665	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	847307-847331	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1357996-1358020	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1446393-1446417	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1763003-1763027	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1763060-1763084	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1763117-1763141	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	2015285-2015309	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	2020719-2020743	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	2474867-2474891	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	2676251-2676275	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	2676309-2676333	1	0.96
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	262961-262985	2	0.92
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	749957-749981	2	0.92
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1046229-1046253	2	0.92
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1142785-1142809	2	0.92
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1142958-1142982	2	0.92
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1442076-1442100	2	0.92
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1660807-1660831	2	0.92
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1660918-1660942	2	0.92
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	1903046-1903070	2	0.92
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	CP031838.1	2551320-2551344	2	0.92

1. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to position: 837978-838005, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

2. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to position: 848671-848698, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

3. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to position: 1358076-1358103, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

4. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to position: 1577142-1577169, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

5. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to position: 1660951-1660978, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

6. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to position: 1762967-1762994, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

7. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to position: 1923251-1923278, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

8. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to position: 2006646-2006673, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

9. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to position: 2015362-2015389, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacgataatgtgcaagttgggg	Protospacer
********* ******************

10. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to position: 2474956-2474983, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

11. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 337786-337810, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

12. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 337844-337868, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

13. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 337902-337926, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

14. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 545641-545665, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

15. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 847307-847331, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

16. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1357996-1358020, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

17. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1446393-1446417, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

18. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1763003-1763027, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

19. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1763060-1763084, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

20. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1763117-1763141, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

21. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 2015285-2015309, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

22. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 2020719-2020743, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

23. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 2474867-2474891, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacatagagaatttcgaaaagaaa	Protospacer
***** *******************

24. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 2676251-2676275, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

25. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 2676309-2676333, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

26. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 262961-262985, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaatgaaa	Protospacer
***** ************** ****

27. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 749957-749981, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacatagagaatttcgtaaagaaa	Protospacer
***** *********** *******

28. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1046229-1046253, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacatggagaatttcgaaaagaaa	Protospacer
***** .******************

29. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1142785-1142809, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacatagagaatttcgtaaagaaa	Protospacer
***** *********** *******

30. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1142958-1142982, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgtaaagaaa	Protospacer
***** *********** *******

31. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1442076-1442100, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgataagaaa	Protospacer
***** ************ ******

32. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1660807-1660831, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacatagagaatttcaaaaagaaa	Protospacer
***** **********.********

33. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1660918-1660942, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcaaaaagaaa	Protospacer
***** **********.********

34. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 1903046-1903070, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttctaaaagaaa	Protospacer
***** ********** ********

35. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to position: 2551320-2551344, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacaaagaatttcgaaaagaaa	Protospacer
***** *.*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031838_7	7.1\|2566539\|25\|CP031838\|CRISPRCasFinder	2566539-2566563	25	LC371242	Escherichia phage EcS1 DNA, complete sequence	15447-15471	2	0.92
CP031838_4	4.1\|1048492\|27\|CP031838\|CRISPRCasFinder	1048492-1048518	27	KM359505	Prochlorococcus phage P-TIM68, complete genome	102710-102736	5	0.815
CP031838_2	2.1\|634352\|34\|CP031838\|CRISPRCasFinder	634352-634385	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP031838_2	2.1\|634352\|34\|CP031838\|CRISPRCasFinder	634352-634385	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 7.1|2566539|25|CP031838|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacaaaaagaatttcgtaaagaaa	Protospacer
*******.********* *******

2. spacer 4.1|1048492|27|CP031838|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

ggtctgtagaatttcttttcgaaattc	CRISPR spacer
gatctgtataatttcttttggaaatag	Protospacer
*.****** ********** *****

3. spacer 2.1|634352|34|CP031838|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
agcatataaaagctataaagctaaagatatgcaa	Protospacer
  **  *. **.* ********************

4. spacer 2.1|634352|34|CP031838|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
tactgtttataacaataaagctaaagttattcaa	Protospacer
. * ***   **************** *** ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12786 : 56019

Bacillus_phage(20.0%)

protease,transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS22982.1\|12786_14073_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-88	51.2
AXS22983.1\|14724_15420_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AXS22984.1\|15416_15746_+	AzlD domain-containing protein	NA	NA	NA	NA
AXS22985.1\|16107_17076_+	alpha/beta fold hydrolase	NA	NA	NA	NA
AXS22986.1\|17368_18307_+	DUF2232 domain-containing protein	NA	NA	NA	NA
AXS22987.1\|18321_20289_+	DHH family phosphoesterase	NA	NA	NA	NA
AXS22988.1\|20285_20732_+	50S ribosomal protein L9	NA	NA	NA	NA
AXS22989.1\|20763_22164_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	5.4e-111	48.1
AXS22990.1\|22213_22441_-	hypothetical protein	NA	NA	NA	NA
AXS22991.1\|22441_23725_+	adenylosuccinate synthetase	L7Y4J5	Megavirus	1.8e-68	34.6
AXS22992.1\|24920_25622_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.5e-42	39.2
AXS22993.1\|25634_27461_+	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.6e-30	31.3
AXS22994.1\|27453_28788_+	hypothetical protein	NA	NA	NA	NA
AXS22995.1\|28788_29577_+	hypothetical protein	NA	NA	NA	NA
AXS22996.1\|29972_30773_+	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	1.0e-37	35.9
AXS22997.1\|30999_33318_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
AXS22998.1\|33492_33687_-	hypothetical protein	NA	NA	NA	NA
AXS22999.1\|33685_34165_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
AXS25650.1\|35289_35520_+	DUF2975 domain-containing protein	NA	NA	NA	NA
AXS23000.1\|35527_35734_+	transcriptional regulator	NA	NA	NA	NA
AXS23001.1\|36082_37186_+	DUF418 domain-containing protein	NA	NA	NA	NA
AXS23002.1\|37205_37934_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXS23003.1\|38133_39228_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	6.9e-37	33.9
AXS23004.1\|41823_42225_+	hypothetical protein	NA	NA	NA	NA
AXS23005.1\|42268_42370_-	hypothetical protein	NA	NA	NA	NA
AXS23006.1\|42388_42772_-	hypothetical protein	A0A2I6AZV9	Macacine_betaherpesvirus	6.4e-14	37.4
AXS23007.1\|42755_42977_-\|transposase	transposase	NA	NA	NA	NA
AXS23008.1\|43078_43519_-	hypothetical protein	NA	NA	NA	NA
AXS23009.1\|44806_45901_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	6.9e-37	33.9
AXS23010.1\|46100_46829_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXS23011.1\|46848_47952_-	DUF418 domain-containing protein	NA	NA	NA	NA
AXS23012.1\|48300_48507_-	transcriptional regulator	NA	NA	NA	NA
AXS25651.1\|48514_48745_-	DUF2975 domain-containing protein	NA	NA	NA	NA
AXS23013.1\|50364_50622_-	hypothetical protein	NA	NA	NA	NA
AXS23014.1\|50689_52480_-	DUF927 domain-containing protein	NA	NA	NA	NA
AXS23015.1\|52605_54033_-	hypothetical protein	NA	NA	NA	NA
AXS23016.1\|54149_54914_+	hypothetical protein	NA	NA	NA	NA
AXS23017.1\|54903_56019_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A1C3S747	Escherichia_phage	3.9e-11	24.3

DBSCAN-SWA_2

769791 : 823422

Staphylococcus_phage(50.0%)

protease,transposase,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS23698.1\|769791_770535_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXS23699.1\|770709_770994_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
AXS23700.1\|771069_772686_+	molecular chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
AXS23701.1\|773387_773600_+	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	1.1e-23	74.3
AXS23702.1\|773596_774187_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.2e-96	94.7
AXS25675.1\|774503_774881_+	hypothetical protein	NA	NA	NA	NA
AXS23703.1\|775045_775489_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXS23704.1\|776342_777650_-	TrkH family potassium uptake protein	NA	NA	NA	NA
AXS23705.1\|777810_778722_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA
AXS23706.1\|778783_779575_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXS23707.1\|779999_781223_-	ArgE/DapE family deacylase	NA	NA	NA	NA
AXS23708.1\|781657_782713_+	bi-component leukocidin LukGH subunit H	A0A2I6PDF3	Staphylococcus_phage	1.3e-35	32.1
AXS23709.1\|782734_783790_+	bi-component leukocidin LukGH subunit G	A0A1X9IGW5	Staphylococcus_phage	9.0e-26	30.6
AXS23710.1\|783988_784981_-	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	2.4e-161	99.6
AXS23711.1\|785369_787418_+	MAP domain-containing protein	NA	NA	NA	NA
AXS23712.1\|787741_789028_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
AXS23713.1\|789227_789326_+	hypothetical protein	NA	NA	NA	NA
AXS23714.1\|789568_789745_+	hypothetical protein	NA	NA	NA	NA
AXS23715.1\|790003_790384_+	GntR family transcriptional regulator	NA	NA	NA	NA
AXS23716.1\|790380_791277_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
AXS23717.1\|791277_791958_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
AXS23718.1\|791954_792827_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
AXS23719.1\|792826_793567_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
AXS23720.1\|793632_794196_-	thioredoxin family protein	NA	NA	NA	NA
AXS23721.1\|794316_794841_+	hypothetical protein	NA	NA	NA	NA
AXS23722.1\|794900_795458_+	DUF1700 domain-containing protein	NA	NA	NA	NA
AXS23723.1\|795454_796297_+	hypothetical protein	NA	NA	NA	NA
AXS23724.1\|796353_797394_-	linear amide C-N hydrolase	NA	NA	NA	NA
AXS23725.1\|797844_798018_+	hypothetical protein	NA	NA	NA	NA
AXS23726.1\|799040_800192_+\|transposase	transposase	P97010	Streptococcus_pyogenes_phage	1.8e-11	31.6
AXS25676.1\|800230_802258_+\|transposase	transposase	NA	NA	NA	NA
AXS23727.1\|802266_802632_+\|transposase	transposase	NA	NA	NA	NA
AXS23728.1\|802618_804007_+	hypothetical protein	NA	NA	NA	NA
AXS23729.1\|804049_804469_-	YolD-like family protein	U3PG23	Staphylococcus_phage	3.1e-30	53.5
AXS23730.1\|804773_805619_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	4.4e-31	33.9
AXS23731.1\|805725_807483_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
AXS23732.1\|807472_807853_+	penicillinase repressor BlaI	NA	NA	NA	NA
AXS23733.1\|808311_809340_+	hypothetical protein	NA	NA	NA	NA
AXS23734.1\|809459_810839_-	aldehyde dehydrogenase	NA	NA	NA	NA
AXS23735.1\|810890_811064_+	hypothetical protein	NA	NA	NA	NA
AXS23736.1\|811256_812186_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
AXS23737.1\|812238_812799_-	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
AXS23738.1\|813170_814268_+	pectate lyase	U5PWM6	Bacillus_phage	2.5e-47	34.9
AXS23739.1\|814471_816034_+	SLC13 family permease	NA	NA	NA	NA
AXS23740.1\|816044_816152_-	hypothetical protein	NA	NA	NA	NA
AXS23741.1\|816223_817018_-	prephenate dehydratase	NA	NA	NA	NA
AXS23742.1\|817037_818114_-	nitric oxide synthase oxygenase	NA	NA	NA	NA
AXS23743.1\|818297_819767_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
AXS23744.1\|819759_820581_+	NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
AXS23745.1\|820851_821454_+	DUF2179 domain-containing protein	NA	NA	NA	NA
AXS23746.1\|821434_821608_+	NETI motif-containing protein	NA	NA	NA	NA
AXS23747.1\|821898_822225_-	staphostatin A	NA	NA	NA	NA
AXS23748.1\|822255_823422_-\|protease	cysteine protease staphopain A	NA	NA	NA	NA

DBSCAN-SWA_3

916310 : 921846

Staphylococcus_phage(83.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS23832.1\|916310_917075_+	exotoxin	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1
AXS23833.1\|917355_918075_+	exotoxin	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
AXS23834.1\|918109_918838_+	exotoxin	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
AXS23835.1\|918991_919762_+	exotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	1.4e-44	43.2
AXS23836.1\|919800_920556_+	exotoxin	A0A075M4C7	Staphylococcus_phage	1.0e-39	41.0
AXS23837.1\|920673_921846_-\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0

DBSCAN-SWA_4

940285 : 974789

Staphylococcus_phage(90.62%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS23853.1\|940285_941038_-	hypothetical protein	A0A097PAT7	Streptococcus_pyogenes_phage	4.4e-51	47.2
AXS23854.1\|941064_941835_-	exotoxin	A0EX09	Staphylococcus_phage	4.3e-25	33.5
AXS23855.1\|941834_942461_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.9e-93	93.8
AXS23856.1\|942534_943530_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	4.2e-73	97.2
AXS23857.1\|943610_944261_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	3.0e-56	99.1
AXS25681.1\|944564_945020_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	1.2e-78	98.6
AXS23858.1\|945178_946657_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.5e-289	100.0
AXS23859.1\|946661_947663_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	9.7e-187	98.2
AXS23860.1\|947659_947917_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	3.6e-45	98.8
AXS23861.1\|947982_948456_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.0e-82	96.8
AXS25682.1\|948460_949207_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.9e-143	98.8
AXS23862.1\|949584_951177_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AXS23863.1\|951548_952742_+	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AXS23864.1\|952866_953775_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AXS23865.1\|953986_954820_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AXS23866.1\|954831_955011_-	hypothetical protein	NA	NA	NA	NA
AXS23867.1\|955202_955556_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
AXS23868.1\|955552_955918_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AXS23869.1\|956173_956476_-	hypothetical protein	NA	NA	NA	NA
AXS23870.1\|956735_957449_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AXS23871.1\|957888_958524_-\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
AXS23872.1\|958819_959263_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	3.5e-56	98.0
AXS23873.1\|959249_959693_-	competence protein ComK	NA	NA	NA	NA
AXS23874.1\|959805_960276_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
AXS23875.1\|960474_960699_+	hypothetical protein	NA	NA	NA	NA
AXS23876.1\|960974_961829_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AXS23877.1\|962123_962519_-	protein ArsC	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
AXS23878.1\|962536_963829_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AXS23879.1\|963828_964143_-	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AXS23880.1\|964665_966168_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AXS23881.1\|966660_967692_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.0e-195	98.8
AXS23882.1\|967698_968331_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.4e-113	100.0
AXS23883.1\|968341_969523_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
AXS23884.1\|969535_970000_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AXS23885.1\|970121_971123_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	3.1e-185	100.0
AXS25683.1\|971031_971223_+	hypothetical protein	NA	NA	NA	NA
AXS23886.1\|971234_971354_+	hypothetical protein	NA	NA	NA	NA
AXS23887.1\|971356_972184_+	alpha/beta hydrolase	NA	NA	NA	NA
AXS23888.1\|972754_973156_+	MarR family transcriptional regulator	NA	NA	NA	NA
AXS23889.1\|973275_973839_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AXS23890.1\|973835_974789_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0

DBSCAN-SWA_5

1104894 : 1163811

uncultured_Mediterranean_phage(16.67%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS23997.1\|1104894_1105980_+\|transposase	transposase	A0A0A8WIF9	Clostridium_phage	2.9e-11	25.7
AXS25689.1\|1105982_1107896_+\|transposase	transposase	NA	NA	NA	NA
AXS23998.1\|1107897_1108263_+\|transposase	transposase	NA	NA	NA	NA
AXS23999.1\|1108545_1108962_-	flavodoxin family protein	NA	NA	NA	NA
AXS24000.1\|1109139_1110567_-	chloramphenicol/florfenicol efflux MFS transporter FexA	NA	NA	NA	NA
AXS24001.1\|1111622_1111907_+	hypothetical protein	NA	NA	NA	NA
AXS24002.1\|1112023_1112221_-	hypothetical protein	NA	NA	NA	NA
AXS24003.1\|1112380_1112854_+	DUF4930 family protein	NA	NA	NA	NA
AXS24004.1\|1112927_1113047_+	hypothetical protein	NA	NA	NA	NA
AXS24005.1\|1113245_1114088_+	rod shape-determining protein MreC	NA	NA	NA	NA
AXS24006.1\|1114087_1114618_+	rod shape-determining protein MreD	NA	NA	NA	NA
AXS24007.1\|1114853_1115162_+	50S ribosomal protein L21	NA	NA	NA	NA
AXS24008.1\|1115167_1115488_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
AXS24009.1\|1115499_1115784_+	50S ribosomal protein L27	NA	NA	NA	NA
AXS24010.1\|1116267_1117560_+	GTPase ObgE	NA	NA	NA	NA
AXS24011.1\|1117572_1118028_+	ACT domain-containing protein	NA	NA	NA	NA
AXS24012.1\|1118041_1118644_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AXS24013.1\|1118675_1119680_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AXS24014.1\|1119681_1120707_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AXS24015.1\|1120729_1121869_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AXS24016.1\|1121887_1122148_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AXS24017.1\|1122422_1124702_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AXS24018.1\|1124904_1127178_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.1e-63	29.1
AXS24019.1\|1127199_1127718_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
AXS24020.1\|1128145_1130335_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	6.9e-12	37.7
AXS24021.1\|1130346_1130799_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
AXS24022.1\|1130795_1131671_+	cell wall amidase	A0A0N9SGH1	Paenibacillus_phage	4.7e-12	33.7
AXS24023.1\|1132131_1133394_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
AXS24024.1\|1133409_1135176_+\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	1.3e-16	27.3
AXS24025.1\|1135508_1135637_+	hypothetical protein	NA	NA	NA	NA
AXS24026.1\|1135636_1136410_+\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
AXS24027.1\|1136570_1137845_-	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	1.4e-105	50.7
AXS24028.1\|1137929_1138352_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
AXS24029.1\|1138451_1138634_+	CsbD family protein	NA	NA	NA	NA
AXS24030.1\|1138673_1138820_+	hypothetical protein	NA	NA	NA	NA
AXS24031.1\|1139056_1140070_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AXS24032.1\|1140381_1141524_+	cysteine desulfurase	A0A1X7QGF3	Faustovirus	8.3e-33	29.3
AXS24033.1\|1141524_1142643_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AXS24034.1\|1143277_1143946_+	tetratricopeptide repeat protein	NA	NA	NA	NA
AXS24035.1\|1143947_1146425_+	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	1.1e-66	29.0
AXS24036.1\|1146767_1149398_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-64	34.4
AXS24037.1\|1149460_1149721_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA
AXS24038.1\|1149724_1150153_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
AXS24039.1\|1150167_1150476_+	DUF1292 domain-containing protein	NA	NA	NA	NA
AXS24040.1\|1150760_1151399_+	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	1.6e-09	28.8
AXS24041.1\|1151401_1152325_+	U32 family peptidase	NA	NA	NA	NA
AXS24042.1\|1152336_1153605_+\|protease	collagenase-like protease	Q6DW11	Phage_TP	4.0e-36	31.7
AXS24043.1\|1153604_1154228_+	uridine kinase	A0A1V0SAA3	Catovirus	2.8e-35	41.1
AXS24044.1\|1154255_1154732_+	transcription elongation factor GreA	NA	NA	NA	NA
AXS24045.1\|1155057_1155792_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA
AXS24046.1\|1155781_1156792_+	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA
AXS24047.1\|1156793_1157243_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
AXS24048.1\|1157256_1158618_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
AXS24049.1\|1158617_1159370_+	LamB/YcsF family protein	NA	NA	NA	NA
AXS24050.1\|1159381_1160611_+	divalent metal cation transporter	NA	NA	NA	NA
AXS24051.1\|1161871_1162264_-	NimC/NimA family protein	NA	NA	NA	NA
AXS24052.1\|1162548_1163811_-\|transposase	IS1380-like element ISEnca1 family transposase	A0A1B0VDR3	Salmonella_phage	1.2e-35	92.9

DBSCAN-SWA_6

1198996 : 1207326

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS24090.1\|1198996_1200814_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.6e-54	36.0
AXS24091.1\|1201037_1202144_+	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AXS24092.1\|1202274_1202952_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AXS24093.1\|1202954_1204055_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AXS24094.1\|1204168_1205515_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	3.1e-55	34.0
AXS24095.1\|1205524_1206415_+	endonuclease	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
AXS24096.1\|1206540_1207326_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.7e-19	28.3

DBSCAN-SWA_7

1481415 : 1497421

Staphylococcus_phage(60.87%)

portal,integrase,terminase,head

attL 1479412:1479429|attR 1503681:1503698

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1479412:1479429	attL	NA	NA	NA	NA
AXS24342.1\|1481415_1482759_-\|head	phage head morphogenesis protein	A0A1J0MFV1	Staphylococcus_phage	1.3e-138	56.8
AXS24343.1\|1482768_1484196_-\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	6.8e-194	71.7
AXS24344.1\|1484208_1485483_-\|terminase	PBSX family phage terminase large subunit	Q4ZE37	Staphylococcus_virus	3.2e-195	76.2
AXS24345.1\|1485469_1485898_-	helix-turn-helix domain-containing protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
AXS24346.1\|1486050_1486539_-	RNA polymerase subunit sigma-70	R9TMH4	Paenibacillus_phage	8.7e-08	28.3
AXS24347.1\|1486581_1486815_-	hypothetical protein	NA	NA	NA	NA
AXS24348.1\|1486815_1487280_-	hypothetical protein	C9E2P0	Enterococcus_phage	3.2e-20	43.0
AXS24349.1\|1487276_1487384_-	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	1.2e-07	87.5
AXS24350.1\|1487514_1488045_-	nucleotide pyrophosphohydrolase	A0A1P8VVP1	Streptococcus_phage	2.3e-22	39.1
AXS24351.1\|1488037_1488349_-	hypothetical protein	NA	NA	NA	NA
AXS24352.1\|1488354_1488513_-	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	6.7e-18	90.4
AXS24353.1\|1488527_1488818_-	hypothetical protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
AXS24354.1\|1488818_1489721_-	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	2.9e-49	51.7
AXS25697.1\|1489733_1490228_-	single-stranded DNA-binding protein	A7TWM8	Staphylococcus_phage	6.4e-83	94.0
AXS24355.1\|1490308_1491088_-	ATP-binding protein	A0A1W6JPW0	Staphylococcus_phage	2.3e-127	88.0
AXS24356.1\|1491088_1491625_-	hypothetical protein	A0A0H3U480	Staphylococcus_phage	4.8e-76	81.9
AXS24357.1\|1491629_1491896_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
AXS24358.1\|1491885_1492203_-	DUF2482 family protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
AXS24359.1\|1492289_1492451_-	DUF1270 family protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
AXS24360.1\|1492549_1493233_-	phage repressor protein	A9CR56	Staphylococcus_phage	5.2e-107	85.6
AXS24361.1\|1493293_1493500_+	hypothetical protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
AXS24362.1\|1493923_1494199_-	hypothetical protein	NA	NA	NA	NA
AXS24363.1\|1494225_1494444_-	DUF739 family protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
AXS24364.1\|1494611_1495004_+	helix-turn-helix domain-containing protein	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
AXS24365.1\|1495150_1495534_+	hypothetical protein	NA	NA	NA	NA
AXS24366.1\|1495545_1496241_+	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	1.4e-06	50.3
AXS24367.1\|1496293_1497421_+\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	6.2e-33	31.4
1503681:1503698	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1753000 : 1761473

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS24606.1\|1753000_1753567_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
AXS24607.1\|1753569_1754598_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.0e-62	41.7
AXS24608.1\|1754590_1756075_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
AXS24609.1\|1756053_1758243_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
AXS24610.1\|1758235_1758907_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AXS24611.1\|1758908_1759172_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AXS24612.1\|1759171_1759876_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AXS24613.1\|1759879_1761004_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AXS24614.1\|1760990_1761473_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_9

1780597 : 1852956

100

Staphylococcus_phage(82.89%)

portal,tail,terminase,integrase,holin,protease,head,capsid,bacteriocin

attL 1806169:1806195|attR 1850085:1850111

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS24630.1\|1780597_1781608_+\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	6.2e-16	32.3
AXS24631.1\|1781689_1782871_+\|protease	cysteine protease staphopain B	NA	NA	NA	NA
AXS24632.1\|1782908_1783238_+	staphostatin B	NA	NA	NA	NA
AXS24633.1\|1783475_1784297_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
AXS24634.1\|1784289_1785093_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
AXS24635.1\|1785079_1786753_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
AXS24636.1\|1786739_1787951_-	isochorismate synthase	NA	NA	NA	NA
AXS24637.1\|1788027_1788132_-	hypothetical protein	NA	NA	NA	NA
AXS24638.1\|1788282_1789221_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
AXS24639.1\|1789272_1789824_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXS24640.1\|1789913_1790204_+	NINE protein	A0A060AN66	Enterococcus_phage	7.5e-07	38.0
AXS24641.1\|1790267_1790399_+	hypothetical protein	NA	NA	NA	NA
AXS24642.1\|1791892_1792249_+	DoxX family protein	NA	NA	NA	NA
AXS24643.1\|1792337_1792475_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
AXS24644.1\|1792615_1792906_+	hypothetical protein	NA	NA	NA	NA
AXS24645.1\|1792993_1793635_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.7e-19	33.0
AXS24646.1\|1793631_1793952_-	YxeA family protein	NA	NA	NA	NA
AXS25706.1\|1795962_1796235_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
AXS24647.1\|1796244_1796346_-	hypothetical protein	NA	NA	NA	NA
AXS24648.1\|1797261_1797864_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXS24649.1\|1797878_1798055_-	DUF2187 domain-containing protein	NA	NA	NA	NA
AXS24650.1\|1798253_1799240_+	lipoate--protein ligase	NA	NA	NA	NA
AXS24651.1\|1799320_1799539_-	IDEAL domain-containing protein	NA	NA	NA	NA
AXS24652.1\|1799748_1800318_+	competence protein ComK	NA	NA	NA	NA
AXS24653.1\|1800804_1802316_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
AXS24654.1\|1802454_1803813_-	TrkH family potassium uptake protein	NA	NA	NA	NA
AXS24655.1\|1803829_1806154_-	PDZ domain-containing protein	W5SAB9	Pithovirus	2.8e-11	27.4
1806169:1806195	attL	NA	NA	NA	NA
AXS24656.1\|1806715_1808170_-	CHAP domain-containing protein	A7TWL1	Staphylococcus_phage	4.4e-289	99.6
AXS24657.1\|1808181_1808484_-\|holin	phage holin	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
AXS24658.1\|1808619_1808919_-	DUF2951 family protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AXS24659.1\|1808964_1809129_-	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AXS24660.1\|1809121_1809511_-	DUF2977 domain-containing protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AXS24661.1\|1809510_1810977_-	DUF2479 domain-containing protein	A0A2I6PEI6	Staphylococcus_phage	2.9e-272	99.0
AXS24662.1\|1810976_1812887_-	hypothetical protein	A0A2I6PF35	Staphylococcus_phage	0.0e+00	100.0
AXS24663.1\|1812902_1813193_-	hypothetical protein	A0A2I6PF46	Staphylococcus_phage	2.1e-49	100.0
AXS24664.1\|1813192_1814776_-	peptidase	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
AXS24665.1\|1814784_1815609_-\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AXS24666.1\|1815608_1821809_-\|tail	phage tail tape measure protein	A0A2K9VBQ5	Staphylococcus_phage	0.0e+00	100.0
AXS24667.1\|1821822_1821981_-	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
AXS24668.1\|1822022_1822373_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
AXS24669.1\|1822430_1822886_-	Ig domain-containing protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
AXS24670.1\|1822977_1823619_-\|tail	phage tail protein	A0A2I6PEP6	Staphylococcus_phage	1.7e-120	99.5
AXS24671.1\|1823653_1824049_-	DUF3168 domain-containing protein	R4WAV1	Staphylococcus_phage	4.4e-66	99.2
AXS24672.1\|1824049_1824451_-	hypothetical protein	R4WAN5	Staphylococcus_phage	8.1e-68	100.0
AXS24673.1\|1824447_1824780_-	hypothetical protein	A0A2I6PEH8	Staphylococcus_phage	3.1e-57	100.0
AXS24674.1\|1824791_1825070_-\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AXS25707.1\|1825138_1826302_-\|capsid	phage major capsid protein	A0A2I6PDD7	Staphylococcus_phage	4.7e-217	99.7
AXS24675.1\|1826313_1827087_-\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
AXS24676.1\|1827070_1828309_-\|portal	phage portal protein	A0A2I6PER5	Staphylococcus_phage	6.9e-235	100.0
AXS24677.1\|1828313_1830005_-\|terminase	terminase large subunit	Q9B0E3	Staphylococcus_virus	0.0e+00	99.5
AXS24678.1\|1829994_1830300_-\|terminase	phage terminase small subunit P27 family	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
AXS24679.1\|1830427_1830742_-	HNH endonuclease	Q4ZCU3	Staphylococcus_virus	2.7e-55	96.2
AXS24680.1\|1830898_1831336_-	transcriptional regulator	A0A2I6PDN2	Staphylococcus_phage	1.1e-75	97.9
AXS24681.1\|1832045_1832246_-	DUF1514 domain-containing protein	A0A2I6PEP5	Staphylococcus_phage	4.9e-26	100.0
AXS24682.1\|1832313_1832466_-	transcriptional regulator	A0A2I6PEM5	Staphylococcus_phage	2.0e-19	100.0
AXS24683.1\|1832462_1832669_-	DUF1381 domain-containing protein	U3PD04	Staphylococcus_phage	1.9e-12	94.7
AXS24684.1\|1832665_1832908_-	hypothetical protein	A0A1W6JQI1	Staphylococcus_phage	6.6e-25	71.8
AXS24685.1\|1832960_1833455_-	dUTPase	I1W653	Staphylococcus_phage	2.5e-55	66.9
AXS24686.1\|1833447_1833642_-	hypothetical protein	M1SVE4	Staphylococcus_phage	5.9e-24	95.1
AXS24687.1\|1833604_1833859_-	DUF1024 family protein	A7TWH5	Staphylococcus_phage	1.8e-36	91.7
AXS24688.1\|1833851_1834160_-	hypothetical protein	Q6R826	Staphylococcus_virus	4.2e-48	96.0
AXS24689.1\|1834156_1834504_-	hypothetical protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
AXS24690.1\|1834500_1834902_-	hypothetical protein	A0A2I6PDC0	Staphylococcus_phage	2.1e-68	94.7
AXS24691.1\|1834904_1835111_-	hypothetical protein	A0A2K9VBT9	Staphylococcus_phage	3.0e-34	100.0
AXS24692.1\|1835124_1835373_-	hypothetical protein	A0A2K9VBX5	Staphylococcus_phage	1.2e-40	100.0
AXS24693.1\|1835372_1835627_-	DUF3310 domain-containing protein	A7TWG9	Staphylococcus_phage	1.8e-41	96.4
AXS24694.1\|1835626_1835989_-	hypothetical protein	B7T0B4	Staphylococcus_virus	2.1e-46	75.8
AXS24695.1\|1835989_1836175_-	DUF3113 family protein	M9NSS9	Staphylococcus_phage	1.6e-26	96.7
AXS24696.1\|1836174_1836582_-	RusA family crossover junction endodeoxyribonuclease	A9CR74	Staphylococcus_phage	8.4e-73	98.5
AXS24697.1\|1836591_1836813_-	DUF3269 family protein	Q9G021	Staphylococcus_phage	1.3e-35	100.0
AXS24698.1\|1836815_1837031_-	hypothetical protein	Q4ZBU5	Staphylococcus_virus	1.2e-33	95.8
AXS24699.1\|1837027_1838269_-	damage-inducible protein	Q4ZA50	Staphylococcus_virus	1.1e-227	99.3
AXS24700.1\|1838265_1838622_-	hypothetical protein	M9NS37	Staphylococcus_phage	8.2e-64	100.0
AXS24701.1\|1838621_1839374_-	DnaD domain protein	C8CGZ1	Staphylococcus_phage	5.5e-118	87.3
AXS24702.1\|1839366_1840041_-	hypothetical protein	C8CGZ0	Staphylococcus_phage	3.4e-127	98.7
AXS24703.1\|1840054_1840483_-	single-stranded DNA-binding protein	A0A0E3XC62	Staphylococcus_phage	4.4e-64	90.8
AXS24704.1\|1840482_1841106_-	DUF1071 domain-containing protein	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
AXS24705.1\|1841098_1841320_-	DUF2483 domain-containing protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
AXS24706.1\|1841329_1841590_-	DUF1108 family protein	C8CGY6	Staphylococcus_phage	2.0e-43	98.8
AXS24707.1\|1841594_1841897_-	DUF2482 family protein	A0A0F6N3N3	Staphylococcus_phage	7.7e-47	97.0
AXS24708.1\|1841991_1842153_-	DUF1270 family protein	A9CR58	Staphylococcus_phage	1.1e-20	98.1
AXS24709.1\|1842165_1842429_-	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	7.4e-46	98.9
AXS24710.1\|1842455_1842671_-	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
AXS24711.1\|1842725_1843091_+	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
AXS24712.1\|1843059_1843305_-	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
AXS24713.1\|1843371_1843752_+	DUF2513 domain-containing protein	Q4ZCQ5	Staphylococcus_virus	5.8e-68	100.0
AXS24714.1\|1843738_1843936_-	hypothetical protein	A7TWF5	Staphylococcus_phage	4.6e-24	100.0
AXS24715.1\|1843951_1844704_-	oxidoreductase	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
AXS24716.1\|1844754_1845084_+	hypothetical protein	M9NS98	Staphylococcus_phage	2.7e-53	100.0
AXS24717.1\|1845072_1845288_-	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
AXS24718.1\|1845303_1845567_-	XRE family transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
AXS24719.1\|1845563_1845737_-	transcriptional regulator	NA	NA	NA	NA
AXS24720.1\|1845699_1846413_+	XRE family transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
AXS24721.1\|1846428_1847361_+	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
AXS24722.1\|1847366_1847708_+	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
AXS24723.1\|1847911_1848058_+	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.2e-13	87.5
AXS24724.1\|1848054_1848669_-	ATPase	A7TW88	Staphylococcus_phage	2.3e-106	99.0
AXS24725.1\|1848794_1850000_+\|integrase	site-specific integrase	B7T0F2	Staphylococcus_virus	1.2e-218	98.5
AXS24726.1\|1850288_1851092_-	hypothetical protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
1850085:1850111	attR	NA	NA	NA	NA
AXS24727.1\|1851393_1852956_-	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	1.7e-36	28.2

DBSCAN-SWA_10

2008100 : 2016684

Streptococcus_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS24880.1\|2008100_2009273_+\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AXS24881.1\|2009777_2010680_+	epimerase	NA	NA	NA	NA
AXS24882.1\|2010922_2011510_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	8.2e-53	55.3
AXS24883.1\|2012083_2013028_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.1e-54	40.6
AXS24884.1\|2013138_2014134_-	YvcK family protein	A1IMD5	Streptococcus_phage	4.8e-53	41.9
AXS24885.1\|2014130_2015042_-	RNase adaptor protein RapZ	A0A0R8VB27	Thermobifida_phage	1.1e-08	36.1
AXS24886.1\|2015236_2015422_+	nitrogen fixation protein NifR	NA	NA	NA	NA
AXS24887.1\|2015748_2016684_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.9e-84	49.2

DBSCAN-SWA_11

2049269 : 2064000

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS24918.1\|2049269_2050031_-	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6
AXS24919.1\|2050027_2050984_-	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AXS25711.1\|2050970_2051942_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	9.5e-139	78.9
AXS24920.1\|2052412_2052517_-	hypothetical protein	NA	NA	NA	NA
AXS24921.1\|2052649_2053621_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AXS24922.1\|2053738_2055844_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AXS24923.1\|2055806_2056205_-	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AXS24924.1\|2056354_2056621_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AXS24925.1\|2057005_2057872_+	DMT family transporter	NA	NA	NA	NA
AXS24926.1\|2057891_2058392_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AXS24927.1\|2058421_2058667_+	hypothetical protein	NA	NA	NA	NA
AXS24928.1\|2058732_2060238_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AXS24929.1\|2060315_2060417_-	hypothetical protein	NA	NA	NA	NA
AXS24930.1\|2060507_2061425_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
AXS24931.1\|2061837_2061933_-	hypothetical protein	NA	NA	NA	NA
AXS24932.1\|2062104_2062647_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AXS24933.1\|2062941_2064000_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7

DBSCAN-SWA_12

2075972 : 2083791

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS24943.1\|2075972_2077124_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	1.2e-23	36.1
AXS24944.1\|2077107_2077701_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.4e-36	42.4
AXS24945.1\|2078051_2078720_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.1e-64	57.1
AXS24946.1\|2078721_2079141_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AXS24947.1\|2079144_2079858_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AXS24948.1\|2079956_2080541_+	hypothetical protein	NA	NA	NA	NA
AXS24949.1\|2080820_2081261_+	hypothetical protein	NA	NA	NA	NA
AXS24950.1\|2081601_2082075_+	DoxX family protein	NA	NA	NA	NA
AXS24951.1\|2082049_2082736_+	DNA-binding response regulator	NA	NA	NA	NA
AXS24952.1\|2082735_2083791_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	1.6e-14	29.5

DBSCAN-SWA_13

2420768 : 2430312

Staphylococcus_phage(33.33%)

integrase

attL 2413513:2413532|attR 2427275:2427294

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2413513:2413532	attL	NA	NA	NA	NA
AXS25252.1\|2420768_2421113_-	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	1.2e-40	64.3
AXS25253.1\|2421783_2424156_-	DNA primase	A0A2H4JCU9	uncultured_Caudovirales_phage	3.7e-136	39.3
AXS25254.1\|2424246_2424540_-	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	1.7e-14	46.1
AXS25255.1\|2424540_2424765_-	hypothetical protein	A0A1W6JPA6	Staphylococcus_phage	7.5e-15	58.8
AXS25256.1\|2424950_2425211_-	DNA-binding protein	NA	NA	NA	NA
AXS25257.1\|2425207_2425447_-	XRE family transcriptional regulator	Q38329	Lactococcus_phage	2.5e-08	40.0
AXS25258.1\|2425579_2425966_+	XRE family transcriptional regulator	U3PIS7	Lactobacillus_phage	3.8e-06	41.2
AXS25259.1\|2426049_2427186_+\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	1.0e-75	42.5
AXS25260.1\|2427279_2428821_-	GMP synthase (glutamine-hydrolyzing)	A0A1V0SH76	Hokovirus	1.2e-23	32.6
2427275:2427294	attR	NA	NA	NA	NA
AXS25261.1\|2428845_2430312_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5

DBSCAN-SWA_14

2744245 : 2828672

Staphylococcus_phage(50.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS25541.1\|2744245_2744641_-	protein ArsC	A0A2H4PQT9	Staphylococcus_phage	8.5e-62	86.3
AXS25542.1\|2744658_2745948_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	1.7e-188	81.8
AXS25543.1\|2745947_2746262_-	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	3.6e-39	73.1
AXS25544.1\|2746322_2746922_-	recombinase family protein	E5FFF9	Burkholderia_phage	3.1e-15	30.8
AXS25545.1\|2747428_2748103_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.7e-126	98.7
AXS25546.1\|2748428_2749199_-	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	NA	NA	NA	NA
AXS25547.1\|2749358_2750342_-	protein rep	A0A286QS97	Streptococcus_phage	6.1e-08	62.0
AXS25548.1\|2750585_2751260_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.7e-126	98.7
AXS25745.1\|2751454_2752357_+	hypothetical protein	NA	NA	NA	NA
AXS25549.1\|2752372_2752816_+	AP2 domain-containing protein	A0A2H4J5K3	uncultured_Caudovirales_phage	1.5e-22	43.6
AXS25550.1\|2752839_2753265_+	hypothetical protein	NA	NA	NA	NA
AXS25551.1\|2753397_2754072_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	4.1e-125	97.3
AXS25552.1\|2754210_2754435_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXS25553.1\|2754934_2756014_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.6e-38	33.5
AXS25746.1\|2756037_2756154_+	hypothetical protein	NA	NA	NA	NA
AXS25554.1\|2756462_2757266_-	lincosamide nucleotidyltransferase Lnu(B)	NA	NA	NA	NA
AXS25555.1\|2757319_2758804_-	ABC-F type ribosomal protection protein Lsa(E)	A0A2H4UUX5	Bodo_saltans_virus	2.6e-26	26.0
AXS25556.1\|2759892_2760351_+	hypothetical protein	NA	NA	NA	NA
AXS25747.1\|2760401_2760653_-	hypothetical protein	NA	NA	NA	NA
AXS25557.1\|2760870_2761680_-	ANT(9) family aminoglycoside nucleotidyltransferase Spw	NA	NA	NA	NA
AXS25558.1\|2761811_2762339_-	adenine phosphoribosyltransferase	A0A1X9I6E2	Streptococcus_phage	1.9e-93	100.0
AXS25559.1\|2762382_2763246_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	A0A1X9I6F2	Streptococcus_phage	8.7e-168	100.0
AXS25560.1\|2763278_2764013_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.5e-141	100.0
AXS25561.1\|2763993_2764827_-	nucleotidyltransferase domain-containing protein	A0A1X9I6C9	Streptococcus_phage	2.0e-145	93.3
AXS25562.1\|2764862_2765537_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	5.4e-125	97.8
AXS25748.1\|2765722_2765785_+	tetracycline resistance leader peptide	NA	NA	NA	NA
AXS25563.1\|2765818_2767195_+	tetracycline efflux MFS transporter Tet(L)	NA	NA	NA	NA
AXS25564.1\|2767243_2767444_-	hypothetical protein	NA	NA	NA	NA
AXS25565.1\|2767758_2769021_+	plasmid recombination protein	NA	NA	NA	NA
AXS25566.1\|2769145_2769820_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.6e-124	97.8
AXS25567.1\|2769851_2770115_-	hypothetical protein	NA	NA	NA	NA
AXS25568.1\|2770581_2771754_+\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AXS25749.1\|2771810_2772203_+	GNAT family N-acetyltransferase	A0A0N7GFH7	Staphylococcus_phage	6.9e-72	100.0
AXS25569.1\|2772203_2773643_+	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	A0A1X9I6C2	Streptococcus_phage	3.8e-285	100.0
AXS25570.1\|2773772_2774945_-\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AXS25571.1\|2775544_2776174_-	recombinase family protein	E5FFF9	Burkholderia_phage	3.1e-13	29.1
AXS25572.1\|2776523_2777369_-	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	A0A1B0VBP7	Salmonella_phage	1.5e-31	34.0
AXS25573.1\|2777475_2779233_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
AXS25574.1\|2779222_2779603_+	penicillinase repressor BlaI	NA	NA	NA	NA
AXS25575.1\|2779866_2780460_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	5.0e-42	51.7
AXS25576.1\|2780431_2781874_+\|transposase	transposase	NA	NA	NA	NA
AXS25577.1\|2781866_2782682_+	ATP-binding protein	NA	NA	NA	NA
AXS25578.1\|2782920_2783121_+	hypothetical protein	NA	NA	NA	NA
AXS25579.1\|2783153_2783474_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AXS25580.1\|2783563_2784448_+	permease	NA	NA	NA	NA
AXS25581.1\|2784467_2785523_+	methyltransferase domain-containing protein	NA	NA	NA	NA
AXS25582.1\|2785547_2785691_+	hypothetical protein	NA	NA	NA	NA
AXS25583.1\|2785730_2787200_+\|transposase	transposase	NA	NA	NA	NA
AXS25584.1\|2787192_2788029_+	ATP-binding protein	A0A2K9VH00	Faecalibacterium_phage	1.1e-07	23.9
AXS25585.1\|2788048_2788609_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.3e-15	31.3
AXS25586.1\|2789391_2789865_-	DUF1648 domain-containing protein	NA	NA	NA	NA
AXS25750.1\|2790215_2791991_+	oleate hydratase	NA	NA	NA	NA
AXS25751.1\|2792314_2793976_+	Na/Pi cotransporter family protein	NA	NA	NA	NA
AXS25587.1\|2794462_2795851_-	MFS transporter	NA	NA	NA	NA
AXS25588.1\|2795852_2797031_-	amidohydrolase	NA	NA	NA	NA
AXS25752.1\|2797180_2799379_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXS25589.1\|2799514_2800285_-	tandem-type lipoprotein	NA	NA	NA	NA
AXS25590.1\|2800349_2801117_-	DUF576 domain-containing protein	NA	NA	NA	NA
AXS25753.1\|2801184_2801955_-	tandem-type lipoprotein	NA	NA	NA	NA
AXS25591.1\|2802006_2802777_-	tandem-type lipoprotein	NA	NA	NA	NA
AXS25592.1\|2802997_2803984_-	1-phosphatidylinositol phosphodiesterase	NA	NA	NA	NA
AXS25593.1\|2804189_2804672_-	hypothetical protein	NA	NA	NA	NA
AXS25594.1\|2804728_2807881_-	ATPase	NA	NA	NA	NA
AXS25595.1\|2808147_2808750_-	hypothetical protein	NA	NA	NA	NA
AXS25596.1\|2808958_2809255_-	TfoX family protein	NA	NA	NA	NA
AXS25597.1\|2809303_2809507_-	hypothetical protein	NA	NA	NA	NA
AXS25754.1\|2809869_2810802_+\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
AXS25598.1\|2810901_2811102_+	hypothetical protein	NA	NA	NA	NA
AXS25599.1\|2811098_2811200_+	universal stress protein	NA	NA	NA	NA
AXS25600.1\|2811467_2812661_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
AXS25601.1\|2812679_2814014_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AXS25602.1\|2814044_2815112_-	dihydroneopterin aldolase	A0A2H4PQR9	Staphylococcus_phage	3.5e-09	41.5
AXS25603.1\|2815248_2815509_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA
AXS25604.1\|2815508_2816264_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AXS25605.1\|2816361_2816463_+	hypothetical protein	NA	NA	NA	NA
AXS25606.1\|2816478_2816931_+\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
AXS25607.1\|2817024_2818770_-	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA
AXS25608.1\|2818916_2819009_-	hypothetical protein	NA	NA	NA	NA
AXS25609.1\|2818972_2819107_+	hypothetical protein	NA	NA	NA	NA
AXS25610.1\|2819205_2819391_+	hypothetical protein	NA	NA	NA	NA
AXS25611.1\|2819490_2820663_+\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AXS25612.1\|2820796_2820973_-	hypothetical protein	NA	NA	NA	NA
AXS25613.1\|2821842_2822160_+	hypothetical protein	NA	NA	NA	NA
AXS25614.1\|2822228_2822954_+	hypothetical protein	NA	NA	NA	NA
AXS25615.1\|2823058_2823286_+	hypothetical protein	NA	NA	NA	NA
AXS25616.1\|2823319_2825509_-	hypothetical protein	NA	NA	NA	NA
AXS25617.1\|2825521_2826196_-	hypothetical protein	NA	NA	NA	NA
AXS25618.1\|2826231_2826906_+\|transposase	IS6 family transposase IS431mec	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1
AXS25619.1\|2826937_2827177_-	hypothetical protein	NA	NA	NA	NA
AXS25620.1\|2827997_2828672_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	4.4e-127	98.2

Anti-CRISPR protein detection

Acr_ID: CP031838.1|AXS24886.1|2015236_2015422_+|nitrogen-fixation-protein-NifR

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP031838.1|AXS24886.1|2015236_2015422_+|nitrogen-fixation-protein-NifR

2015236_2015422_+

61 aa aa

HTH_WhiA

Identity	Hit_domain_coverage
0.6309523809523809	1.0

2008100-2016684

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP031838_5	Orphan	5.1\|1178855\|28\|CP031838\|CRISPRCasFinder	1178855-1178882	28	2015362-2015389	1

1. spacer 5.1|1178855|28|CP031838|CRISPRCasFinder matches to CP031838 position: 2015362-2015389, mismatch: 1

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacgataatgtgcaagttgggg	Protospacer
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Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031838

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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