CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP031613	Klebsiella pneumoniae strain ZYST1 chromosome, complete genome	2 crisprs	WYL,csa3,cas3,DEDDh,DinG,RT	6
CP031615	Klebsiella pneumoniae strain ZYST1 plasmid pZYST1C2, complete sequence	0 crisprs	NA	2
CP031614	Klebsiella pneumoniae strain ZYST1 plasmid pZYST1C1, complete sequence	0 crisprs	RT,csa3	11
CP031616	Klebsiella pneumoniae strain ZYST1 plasmid pZYST1C3, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031613_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031613_1

4145218-4145346

Orphan

Consensus_repeat	Method
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031613_1

>merge|CP031613|1|4145218-4145346|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

>CP031613|1|1|4145218-4145346|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031613.1\|AXS32491.1\|4144301_4145162_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
CP031613.1\|AXS32501.1\|4152567_4153335_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP031613.1\|AXS32494.1\|4146838_4147435_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
CP031613.1\|AXS32493.1\|4145602_4146826_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
CP031613.1\|AXS32497.1\|4148859_4150098_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
CP031613.1\|AXS32483.1\|4136385_4137786_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
CP031613.1\|AXS32489.1\|4142631_4143084_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP031613.1\|AXS32484.1\|4137831_4138524_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
CP031613.1\|AXS32488.1\|4141131_4142589_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP031613.1\|AXS32486.1\|4139065_4140310_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
CP031613.1\|AXS32482.1\|4134952_4136236_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
CP031613.1\|AXS32499.1\|4151401_4151611_+\|hypothetical-protein	unknown	unknown	unknown
CP031613.1\|AXS32492.1\|4145384_4145600_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
CP031613.1\|AXS32496.1\|4148072_4148867_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
CP031613.1\|AXS32490.1\|4143086_4144142_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP031613.1\|AXS32500.1\|4151856_4152597_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577
CP031613.1\|AXS32485.1\|4138609_4139008_-\|Crl-family-RNA-polymerase-assembly-factor	unknown	unknown	gnl\|CDD\|182882
CP031613.1\|AXS32498.1\|4150101_4151445_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	unknown	unknown	gnl\|CDD\|235426
CP031613.1\|AXS32495.1\|4147441_4148080_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
CP031613.1\|AXS32487.1\|4140415_4140874_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395

Protein	Function_ID	Function_description	E-value
CP031613.1\|AXS32491.1\|4144301_4145162_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	1.90819e-128
CP031613.1\|AXS32501.1\|4152567_4153335_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
CP031613.1\|AXS32494.1\|4146838_4147435_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
CP031613.1\|AXS32493.1\|4145602_4146826_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
CP031613.1\|AXS32497.1\|4148859_4150098_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
CP031613.1\|AXS32483.1\|4136385_4137786_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
CP031613.1\|AXS32489.1\|4142631_4143084_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.92264e-85
CP031613.1\|AXS32484.1\|4137831_4138524_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	3.98097e-151
CP031613.1\|AXS32488.1\|4141131_4142589_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP031613.1\|AXS32486.1\|4139065_4140310_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP031613.1\|AXS32482.1\|4134952_4136236_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
CP031613.1\|AXS32492.1\|4145384_4145600_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	5.41902e-29
CP031613.1\|AXS32496.1\|4148072_4148867_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.16359e-153
CP031613.1\|AXS32490.1\|4143086_4144142_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP031613.1\|AXS32500.1\|4151856_4152597_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
CP031613.1\|AXS32485.1\|4138609_4139008_-\|Crl-family-RNA-polymerase-assembly-factor	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	3.74492e-83
CP031613.1\|AXS32498.1\|4150101_4151445_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
CP031613.1\|AXS32495.1\|4147441_4148080_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	9.27315e-142
CP031613.1\|AXS32487.1\|4140415_4140874_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113

>CP031613.1|AXS32491.1|4144301_4145162_+|glycerophosphodiester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRMAIELGADGVMVDSPAQAKSWQ
>CP031613.1|AXS32490.1|4143086_4144142_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>CP031613.1|AXS32489.1|4142631_4143084_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>CP031613.1|AXS32488.1|4141131_4142589_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>CP031613.1|AXS32487.1|4140415_4140874_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>CP031613.1|AXS32486.1|4139065_4140310_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>CP031613.1|AXS32485.1|4138609_4139008_-|Crl-family-RNA-polymerase-assembly-factor
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>CP031613.1|AXS32484.1|4137831_4138524_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARTHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>CP031613.1|AXS32483.1|4136385_4137786_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>CP031613.1|AXS32482.1|4134952_4136236_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNRAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>CP031613.1|AXS32492.1|4145384_4145600_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>CP031613.1|AXS32493.1|4145602_4146826_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>CP031613.1|AXS32494.1|4146838_4147435_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>CP031613.1|AXS32495.1|4147441_4148080_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDIKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>CP031613.1|AXS32496.1|4148072_4148867_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPDMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>CP031613.1|AXS32497.1|4148859_4150098_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGTEQLQQTIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYLTVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>CP031613.1|AXS32498.1|4150101_4151445_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>CP031613.1|AXS32499.1|4151401_4151611_+|hypothetical-protein
MPAMGKSSPFVILIISLAGIRNLNPDAGQGQLIDRMAEKKGRNGASSAQDGREASFLTLMMNRRKCNIS
>CP031613.1|AXS32500.1|4151856_4152597_+|transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>CP031613.1|AXS32501.1|4152567_4153335_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV

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Crispr_ID: CP031613_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031613_2

4362204-4362298

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031613_2

>merge|CP031613|2|4362204-4362298|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP031613|2|2|4362204-4362298|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP031613.1\|AXS32679.1\|4360031_4360571_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP031613.1\|AXS32682.1\|4362439_4364065_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP031613.1\|AXS32687.1\|4369551_4370541_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP031613.1\|AXS32673.1\|4349602_4351312_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP031613.1\|AXS32674.1\|4351322_4352825_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP031613.1\|AXS32676.1\|4353833_4356191_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP031613.1\|AXS32689.1\|4371361_4371739_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP031613.1\|AXS32685.1\|4365856_4368205_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP031613.1\|AXS32690.1\|4371743_4372592_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP031613.1\|AXS32683.1\|4364054_4364753_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP031613.1\|AXS32678.1\|4359297_4359957_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP031613.1\|AXS32677.1\|4356378_4359285_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP031613.1\|AXS32688.1\|4370537_4371359_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP031613.1\|AXS32675.1\|4352962_4353658_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP031613.1\|AXS32686.1\|4368259_4369546_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP031613.1\|AXS32672.1\|4348420_4349266_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP031613.1\|AXS32681.1\|4360750_4362115_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP031613.1\|AXS32680.1\|4360533_4360722_+\|hypothetical-protein	unknown	unknown	unknown
CP031613.1\|AXS32684.1\|4364785_4365613_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP031613.1\|AXS32691.1\|4372843_4373323_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714

Protein	Function_ID	Function_description	E-value
CP031613.1\|AXS32679.1\|4360031_4360571_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	1.45487e-85
CP031613.1\|AXS32682.1\|4362439_4364065_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
CP031613.1\|AXS32687.1\|4369551_4370541_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP031613.1\|AXS32673.1\|4349602_4351312_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP031613.1\|AXS32683.1\|4364054_4364753_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.50146e-66
CP031613.1\|AXS32676.1\|4353833_4356191_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP031613.1\|AXS32689.1\|4371361_4371739_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP031613.1\|AXS32685.1\|4365856_4368205_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP031613.1\|AXS32690.1\|4371743_4372592_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP031613.1\|AXS32674.1\|4351322_4352825_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP031613.1\|AXS32678.1\|4359297_4359957_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
CP031613.1\|AXS32691.1\|4372843_4373323_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
CP031613.1\|AXS32688.1\|4370537_4371359_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP031613.1\|AXS32675.1\|4352962_4353658_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP031613.1\|AXS32686.1\|4368259_4369546_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP031613.1\|AXS32672.1\|4348420_4349266_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP031613.1\|AXS32681.1\|4360750_4362115_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP031613.1\|AXS32677.1\|4356378_4359285_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP031613.1\|AXS32684.1\|4364785_4365613_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164

>CP031613.1|AXS32681.1|4360750_4362115_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP031613.1|AXS32680.1|4360533_4360722_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKCDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>CP031613.1|AXS32679.1|4360031_4360571_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVNIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP031613.1|AXS32678.1|4359297_4359957_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP031613.1|AXS32677.1|4356378_4359285_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP031613.1|AXS32676.1|4353833_4356191_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFNASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPADYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP031613.1|AXS32675.1|4352962_4353658_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP031613.1|AXS32674.1|4351322_4352825_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP031613.1|AXS32673.1|4349602_4351312_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGIYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP031613.1|AXS32672.1|4348420_4349266_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP031613.1|AXS32682.1|4362439_4364065_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>CP031613.1|AXS32683.1|4364054_4364753_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHTTPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP031613.1|AXS32684.1|4364785_4365613_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP031613.1|AXS32685.1|4365856_4368205_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP031613.1|AXS32686.1|4368259_4369546_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP031613.1|AXS32687.1|4369551_4370541_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP031613.1|AXS32688.1|4370537_4371359_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP031613.1|AXS32689.1|4371361_4371739_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP031613.1|AXS32690.1|4371743_4372592_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP031613.1|AXS32691.1|4372843_4373323_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1202634 : 1288182

Salmonella_phage(71.7%)

head,lysis,tRNA,tail,integrase,plate,portal,capsid

attL 1212266:1212313|attR 1247103:1247150

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS29693.1\|1202634_1204968_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.4
AXS29694.1\|1204982_1205303_-	hypothetical protein	NA	NA	NA	NA
AXS29695.1\|1205299_1205527_-	hypothetical protein	NA	NA	NA	NA
AXS29696.1\|1205523_1206075_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	3.0e-33	70.4
AXS29697.1\|1206887_1207625_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	6.9e-81	66.1
AXS29698.1\|1207621_1207867_+	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-31	77.8
AXS29699.1\|1207883_1208450_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-56	63.8
AXS29700.1\|1208491_1208599_-	acetyl xylan esterase	NA	NA	NA	NA
AXS29701.1\|1208964_1210857_+	hypothetical protein	NA	NA	NA	NA
AXS29702.1\|1210893_1212081_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.4e-107	51.0
AXS29703.1\|1212216_1212399_+	hypothetical protein	NA	NA	NA	NA
1212266:1212313	attL	NA	NA	NA	NA
AXS29704.1\|1212427_1213618_-	hypothetical protein	E5G6K9	Salmonella_phage	6.9e-107	49.6
AXS29705.1\|1213627_1214641_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	8.0e-189	93.5
AXS29706.1\|1214643_1215273_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.8e-61	54.5
AXS29707.1\|1215395_1215638_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
AXS29708.1\|1215670_1216180_+	hypothetical protein	A0A1S6L008	Salmonella_phage	1.4e-77	85.2
AXS29709.1\|1216187_1216388_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	1.3e-26	84.6
AXS29710.1\|1216351_1216693_+	hypothetical protein	A0A1S6L019	Salmonella_phage	1.1e-49	86.7
AXS29711.1\|1216760_1216994_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	3.5e-31	92.2
AXS29712.1\|1216993_1217221_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.5e-34	90.7
AXS29713.1\|1217217_1217514_+	DUF3850 domain-containing protein	A0A059T699	Listeria_phage	1.0e-11	50.0
AXS29714.1\|1217510_1218398_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	E5G6L8	Salmonella_phage	1.0e-110	71.1
AXS29715.1\|1218378_1220763_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.4
AXS29716.1\|1220925_1221114_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
AXS29717.1\|1221125_1221359_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	9.8e-34	94.8
AXS29718.1\|1221454_1222138_-	hypothetical protein	NA	NA	NA	NA
AXS29719.1\|1222124_1223204_-	hypothetical protein	NA	NA	NA	NA
AXS29720.1\|1223203_1224205_-	hypothetical protein	NA	NA	NA	NA
AXS29721.1\|1224726_1224996_+	hypothetical protein	D2IZW1	Enterococcus_phage	2.4e-15	42.4
AXS29722.1\|1225048_1226095_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.2e-171	89.3
AXS29723.1\|1226094_1227861_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	92.2
AXS29724.1\|1228001_1228835_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	3.6e-102	72.6
AXS29725.1\|1228851_1229904_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	2.6e-174	90.5
AXS29726.1\|1229907_1230561_+	hypothetical protein	A0A1S6KZX1	Salmonella_phage	4.2e-90	79.1
AXS29727.1\|1230656_1231121_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.3e-74	85.7
AXS29728.1\|1231120_1231324_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.7e-29	88.1
AXS29729.1\|1231327_1231543_+	hypothetical protein	E5G6N0	Salmonella_phage	2.1e-30	90.1
AXS29730.1\|1231523_1232033_+	lysozyme	E5G6N1	Salmonella_phage	5.2e-80	83.4
AXS29731.1\|1232037_1232421_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	5.1e-19	46.2
AXS29732.1\|1232417_1232846_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	5.4e-54	82.5
AXS29733.1\|1232775_1232979_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	4.9e-21	73.1
AXS29734.1\|1232941_1233373_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	3.4e-64	83.9
AXS29735.1\|1233365_1233812_+	phage virion morphogenesis protein	E5G6N4	Salmonella_phage	8.7e-55	78.6
AXS29736.1\|1233880_1234453_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	71.2
AXS29737.1\|1234449_1234812_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	3.5e-46	83.9
AXS29738.1\|1234798_1235707_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.6e-108	67.9
AXS29739.1\|1235699_1236296_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.2e-54	57.6
AXS29740.1\|1238313_1238565_+	hypothetical protein	NA	NA	NA	NA
AXS29741.1\|1238636_1239800_+\|tail	phage tail protein	S4TP62	Salmonella_phage	1.2e-42	48.3
AXS29742.1\|1239936_1241109_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.7e-206	91.5
AXS29743.1\|1241118_1241634_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	6.3e-81	84.8
AXS29744.1\|1241686_1241986_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	4.8e-33	77.0
AXS29745.1\|1242000_1242120_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
AXS29746.1\|1242112_1244743_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	6.2e-108	37.0
AXS29747.1\|1244739_1245234_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.0e-59	78.9
AXS29748.1\|1245221_1246316_+	phage late control D family protein	E5G6Q3	Salmonella_phage	1.3e-168	82.5
AXS29749.1\|1246382_1246601_+	levansucrase regulator	Q53ZE7	Salmonella_virus	1.9e-26	72.2
AXS29750.1\|1246628_1247006_-	hypothetical protein	NA	NA	NA	NA
AXS29751.1\|1247609_1248092_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
1247103:1247150	attR	NA	NA	NA	NA
AXS29752.1\|1248202_1248679_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AXS29753.1\|1248668_1248959_+	RnfH family protein	NA	NA	NA	NA
AXS29754.1\|1249025_1249367_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AXS29755.1\|1249514_1251176_-	DNA repair protein RecN	NA	NA	NA	NA
AXS29756.1\|1251262_1252141_-	NAD(+) kinase	NA	NA	NA	NA
AXS29757.1\|1252265_1252856_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AXS29758.1\|1252975_1254262_-	DUF21 domain-containing protein	NA	NA	NA	NA
AXS29759.1\|1254281_1255073_-	inner membrane protein YpjD	NA	NA	NA	NA
AXS29760.1\|1255236_1256601_+	signal recognition particle protein	NA	NA	NA	NA
AXS29761.1\|1256860_1257109_+	30S ribosomal protein S16	NA	NA	NA	NA
AXS29762.1\|1257127_1257676_+	ribosome maturation factor RimM	NA	NA	NA	NA
AXS29763.1\|1257707_1258475_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AXS29764.1\|1258514_1258862_+	50S ribosomal protein L19	NA	NA	NA	NA
AXS29765.1\|1258980_1259439_+	DUF2946 domain-containing protein	NA	NA	NA	NA
AXS29766.1\|1259495_1260866_+	PepSY domain-containing protein	NA	NA	NA	NA
AXS29767.1\|1260874_1261357_-	OmpA family protein	NA	NA	NA	NA
AXS29768.1\|1261370_1262594_-	diguanylate cyclase	NA	NA	NA	NA
AXS29769.1\|1262586_1263096_-	YfiR family protein	NA	NA	NA	NA
AXS29770.1\|1263438_1264509_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.8e-90	51.5
AXS29771.1\|1264518_1265640_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AXS29772.1\|1265702_1266575_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
AXS29773.1\|1266571_1267732_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AXS29774.1\|1267832_1267880_-	hypothetical protein	NA	NA	NA	NA
AXS29775.1\|1267986_1268322_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AXS29776.1\|1268592_1269330_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AXS29777.1\|1269461_1270442_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
AXS29778.1\|1270438_1271170_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AXS29779.1\|1271299_1273873_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.9e-128	35.4
AXS29780.1\|1279870_1281169_+	MFS transporter	Q6JIH2	Burkholderia_virus	4.1e-44	31.5
AXS29781.1\|1281172_1281496_-	YfiM family lipoprotein	NA	NA	NA	NA
AXS29782.1\|1281537_1282893_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AXS29783.1\|1283013_1285665_-	protein lysine acetyltransferase	NA	NA	NA	NA
AXS29784.1\|1285699_1286398_-	DTW domain-containing protein	NA	NA	NA	NA
AXS29785.1\|1286467_1286893_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	6.0e-13	40.2
AXS29786.1\|1287096_1288182_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1363223 : 1428843

Salmonella_phage(33.96%)

holin,tail,protease,integrase,transposase,terminase

attL 1364218:1364235|attR 1431590:1431607

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS29854.1\|1363223_1364690_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
1364218:1364235	attL	NA	NA	NA	NA
AXS29855.1\|1364757_1366335_+	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
AXS29856.1\|1366526_1367777_+\|integrase	site-specific integrase	A0A1X9TCT6	Enterobacter_phage	6.8e-206	85.1
AXS29857.1\|1367793_1367985_-	hypothetical protein	NA	NA	NA	NA
AXS29858.1\|1367981_1368575_-	adenine methylase	T1SA14	Salmonella_phage	3.7e-109	91.4
AXS29859.1\|1368571_1368730_-	DUF1317 family protein	T1SAR0	Salmonella_phage	5.1e-18	80.8
AXS29860.1\|1368722_1369016_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.9e-32	71.1
AXS29861.1\|1369125_1369374_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
AXS29862.1\|1369422_1370304_-	recombinase RecT	T1SBJ5	Salmonella_phage	6.8e-136	84.3
AXS29863.1\|1370300_1371122_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	6.2e-131	80.6
AXS29864.1\|1371121_1371406_-	hypothetical protein	B5WZV1	Pseudomonas_phage	2.4e-10	44.0
AXS29865.1\|1371402_1371702_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	4.7e-20	54.5
AXS29866.1\|1371709_1372741_-	hypothetical protein	A0A1B0VN89	Pseudomonas_phage	3.6e-35	51.4
AXS29867.1\|1373141_1373723_-	XRE family transcriptional regulator	Q858D7	Salmonella_phage	2.1e-64	64.3
AXS29868.1\|1373876_1374110_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
AXS29869.1\|1374256_1374466_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.4e-26	78.3
AXS29870.1\|1374465_1375227_+	primosomal protein	A0A193GZ86	Enterobacter_phage	1.6e-136	90.2
AXS29871.1\|1375223_1376009_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
AXS29872.1\|1376128_1376476_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.7e-50	83.5
AXS29873.1\|1376668_1377208_+	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-08	41.9
AXS29874.1\|1377484_1378246_+	ead/Ea22-like family protein	C6ZR30	Salmonella_phage	6.8e-07	65.2
AXS29875.1\|1378242_1378422_+	hypothetical protein	NA	NA	NA	NA
AXS29876.1\|1378418_1379162_+	hypothetical protein	K7P7E4	Enterobacteria_phage	3.3e-14	56.6
AXS29877.1\|1379246_1379486_+	hypothetical protein	G8C7S3	Escherichia_phage	1.9e-08	51.7
AXS29878.1\|1379485_1379722_+	hypothetical protein	NA	NA	NA	NA
AXS29879.1\|1379714_1380053_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.9e-49	88.2
AXS29880.1\|1380127_1380385_+	lF-82	NA	NA	NA	NA
AXS29881.1\|1380462_1381047_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	1.3e-90	89.1
AXS29882.1\|1381043_1382519_+\|terminase	terminase	Q858H3	Salmonella_phage	1.9e-279	92.5
AXS29883.1\|1382530_1382803_-	hypothetical protein	NA	NA	NA	NA
AXS29884.1\|1382888_1383254_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	5.1e-61	95.9
AXS29885.1\|1383745_1383934_+	hypothetical protein	NA	NA	NA	NA
AXS29886.1\|1383953_1384160_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
AXS29887.1\|1384174_1385857_+\|tail	phage tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	2.5e-264	84.4
AXS29888.1\|1385853_1386150_+	hypothetical protein	T1SBI9	Salmonella_phage	9.6e-34	70.4
AXS29889.1\|1386152_1386842_+	peptidase	G9L6C4	Escherichia_phage	2.9e-65	69.6
AXS29890.1\|1386856_1387843_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	3.3e-179	93.6
AXS29891.1\|1387896_1388334_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
AXS29892.1\|1388344_1388686_+	hypothetical protein	G9L6C7	Escherichia_phage	1.1e-36	71.9
AXS29893.1\|1388736_1389060_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
AXS29894.1\|1389059_1389665_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	3.3e-89	79.0
AXS29895.1\|1389664_1392142_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.2
AXS29896.1\|1392141_1392606_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
AXS29897.1\|1392605_1393145_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	3.0e-70	79.4
AXS29898.1\|1393155_1395969_+	hypothetical protein	T1SBJ1	Salmonella_phage	0.0e+00	93.3
AXS29899.1\|1395965_1397771_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	1.7e-237	73.3
AXS29900.1\|1397774_1400249_+	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	87.0
AXS29901.1\|1400447_1400744_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	4.4e-47	94.8
AXS29902.1\|1400778_1400931_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	3.3e-14	83.7
AXS29903.1\|1401029_1401326_-	hypothetical protein	T1SA06	Salmonella_phage	2.4e-24	65.1
AXS29904.1\|1403834_1404083_+	hypothetical protein	NA	NA	NA	NA
AXS29905.1\|1404418_1404823_+	hypothetical protein	T1SA79	Salmonella_phage	9.3e-56	84.1
AXS29906.1\|1404809_1405115_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	7.8e-39	80.4
AXS29907.1\|1405104_1405734_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	8.1e-91	77.4
AXS29908.1\|1405730_1406213_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	4.1e-58	77.5
AXS29909.1\|1406432_1408301_-	phosphatase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
AXS29910.1\|1408284_1409463_-	anaerobic sulfatase maturase	NA	NA	NA	NA
AXS29911.1\|1409756_1410989_-	MFS transporter	NA	NA	NA	NA
AXS29912.1\|1411086_1411974_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXS29913.1\|1412070_1412262_-	DUF2633 family protein	G9L6F2	Escherichia_phage	3.3e-19	79.3
AXS29914.1\|1414895_1416428_-	exopolyphosphatase	NA	NA	NA	NA
AXS29915.1\|1416431_1418492_-	polyphosphate kinase 1	NA	NA	NA	NA
AXS29916.1\|1418672_1419314_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	9.0e-29	41.1
AXS29917.1\|1419310_1420348_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
AXS29918.1\|1420611_1421505_+	beta-glucoside kinase	NA	NA	NA	NA
AXS29919.1\|1421514_1422948_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
AXS29920.1\|1423165_1423792_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
AXS29921.1\|1423887_1425174_+	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
AXS29922.1\|1425272_1425974_+	DnaA inactivator Hda	NA	NA	NA	NA
AXS29923.1\|1425970_1426882_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
AXS29924.1\|1427010_1427370_-	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
AXS29925.1\|1427379_1428843_-\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
1431590:1431607	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2712399 : 2723286

Escherichia_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS31139.1\|2712399_2715507_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5
AXS31140.1\|2716857_2717946_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	2.0e-209	99.4
AXS31141.1\|2718032_2718293_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AXS31142.1\|2718590_2719451_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
AXS31143.1\|2719471_2720233_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AXS31144.1\|2720223_2720457_+	hypothetical protein	NA	NA	NA	NA
AXS31145.1\|2720494_2721397_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.5e-157	98.3
AXS31146.1\|2722665_2723286_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

3377550 : 3387014

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS31767.1\|3377550_3379272_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
AXS31768.1\|3379316_3380018_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AXS31769.1\|3380371_3380590_+	translation initiation factor IF-1	NA	NA	NA	NA
AXS31770.1\|3380710_3382990_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AXS31771.1\|3383020_3383338_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AXS31772.1\|3383663_3383885_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AXS31773.1\|3383839_3384022_-	hypothetical protein	NA	NA	NA	NA
AXS31774.1\|3383961_3385902_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	7.2e-37	40.5
AXS31775.1\|3385898_3387014_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_5

3581812 : 3619853

Enterobacteria_phage(77.78%)

head,holin,tail,integrase,plate,portal,terminase,capsid

attL 3569945:3569959|attR 3620363:3620377

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3569945:3569959	attL	NA	NA	NA	NA
AXS31960.1\|3581812_3582619_-	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	1.5e-65	53.2
AXS31961.1\|3582615_3582822_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXS31962.1\|3582952_3583249_-	NINE protein	M4ZS56	Bacillus_phage	9.0e-16	67.2
AXS31963.1\|3583384_3583525_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
AXS31964.1\|3583715_3583976_-	hypothetical protein	NA	NA	NA	NA
AXS31965.1\|3584018_3585128_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	3.1e-194	94.3
AXS31966.1\|3585285_3586470_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	4.7e-225	99.2
AXS31967.1\|3586469_3586982_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.2e-93	100.0
AXS31968.1\|3587036_3587402_+\|tail	phage tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.9e-55	96.7
AXS31969.1\|3587329_3587566_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.9e-22	98.0
AXS31970.1\|3587552_3590360_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	93.3
AXS31971.1\|3590366_3590861_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	2.1e-86	99.4
AXS31972.1\|3590887_3591487_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.6e-86	86.3
AXS31973.1\|3591519_3591906_+	hypothetical protein	NA	NA	NA	NA
AXS31974.1\|3591927_3592368_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	7.3e-54	70.3
AXS31975.1\|3592339_3592942_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.2e-91	86.4
AXS31976.1\|3592941_3593382_-\|tail	phage tail protein	A0A0F7LCR3	Escherichia_phage	5.8e-35	50.6
AXS31977.1\|3593410_3594670_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.2e-180	70.9
AXS31978.1\|3594666_3595275_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	2.1e-88	76.4
AXS31979.1\|3595267_3596164_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	3.9e-155	98.3
AXS31980.1\|3596167_3596518_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	99.1
AXS31981.1\|3596514_3597096_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	5.0e-103	99.0
AXS31982.1\|3597092_3597728_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.1e-114	100.0
AXS31983.1\|3597720_3598188_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	1.0e-85	99.4
AXS31984.1\|3598174_3598354_-	hypothetical protein	NA	NA	NA	NA
AXS31985.1\|3598325_3598733_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	9.0e-67	99.3
AXS31986.1\|3598729_3599122_-	M15 family peptidase	A0A0A7NQ86	Enterobacteria_phage	2.9e-70	99.2
AXS31987.1\|3599118_3599442_-\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
AXS31988.1\|3599444_3599645_-\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
AXS31989.1\|3599644_3600139_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-89	99.4
AXS31990.1\|3600241_3601042_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	7.3e-129	90.6
AXS31991.1\|3601087_3602140_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.1e-183	92.0
AXS31992.1\|3602163_3603000_-\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	7.2e-119	80.2
AXS31993.1\|3603154_3604906_+	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	98.1
AXS31994.1\|3604905_3605952_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	3.3e-206	99.7
AXS31995.1\|3606456_3608661_-	peptidase S8	NA	NA	NA	NA
AXS31996.1\|3608657_3609740_-	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	8.4e-19	29.5
AXS31997.1\|3610070_3610382_-	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	3.2e-48	95.1
AXS31998.1\|3610386_3611346_-	recombinase	A0A0A7NPX4	Enterobacteria_phage	1.1e-179	99.4
AXS31999.1\|3611422_3614263_-	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	87.7
AXS32000.1\|3614259_3614649_-	inositol monophosphatase	NA	NA	NA	NA
AXS32001.1\|3614721_3614952_-	derepression protein	A0A0A7NV48	Enterobacteria_phage	1.3e-25	84.2
AXS32002.1\|3615274_3615574_-	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	9.6e-42	90.8
AXS32003.1\|3615570_3615816_-	MarR family transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	3.3e-40	98.8
AXS32004.1\|3615812_3616016_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	1.0e-26	88.1
AXS32005.1\|3616212_3616455_-	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
AXS32006.1\|3616466_3616754_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	1.0e-32	76.8
AXS32007.1\|3616764_3617106_-	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	5.1e-55	92.2
AXS32008.1\|3617124_3617451_-	hypothetical protein	NA	NA	NA	NA
AXS32009.1\|3617546_3617849_+	XRE family transcriptional regulator	Q1JS63	Enterobacteria_phage	2.3e-19	52.0
AXS32010.1\|3617915_3618905_+\|integrase	integrase	Q83VS6	Escherichia_phage	3.4e-99	53.5
AXS32011.1\|3619061_3619853_-	endonuclease VIII	A0A1V0CNR6	Kaumoebavirus	1.2e-11	26.2
3620363:3620377	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4602692 : 4614724

Enterobacteria_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXS32894.1\|4602692_4603958_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	5.8e-80	40.3
AXS32895.1\|4604700_4607034_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.7
AXS32896.1\|4607047_4607368_-	hypothetical protein	NA	NA	NA	NA
AXS32897.1\|4607364_4607592_-	hypothetical protein	NA	NA	NA	NA
AXS32898.1\|4607588_4608140_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.9e-31	66.7
AXS32899.1\|4608963_4609701_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.9e-70	60.1
AXS32900.1\|4609697_4609943_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.0e-20	59.3
AXS32901.1\|4609960_4610527_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.9e-60	64.9
AXS32902.1\|4610592_4610808_+	hypothetical protein	NA	NA	NA	NA
AXS32903.1\|4610923_4613332_-	hypothetical protein	NA	NA	NA	NA
AXS32904.1\|4613452_4614724_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.1e-73	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031615

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

53025 : 92693

Escherichia_phage(22.22%)

transposase,integrase

attL 81308:81367|attR 92697:93516

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY66218.1\|53025_54180_-\|integrase	integrase	B5WZU7	Pseudomonas_phage	1.3e-46	43.0
AXY66283.1\|54307_54463_+	shufflon protein C'	NA	NA	NA	NA
AXY66219.1\|54459_54765_-	shufflon protein C	NA	NA	NA	NA
AXY66220.1\|54752_55100_-	shufflon protein D'	NA	NA	NA	NA
AXY66221.1\|55166_55415_+	hypothetical protein	NA	NA	NA	NA
AXY66284.1\|55411_55618_-	prepilin	NA	NA	NA	NA
AXY66285.1\|55582_55906_+	shufflon protein B	NA	NA	NA	NA
AXY66222.1\|57233_57890_-	prepilin peptidase	NA	NA	NA	NA
AXY66223.1\|57874_58435_-	lytic transglycosylase	NA	NA	NA	NA
AXY66224.1\|58444_59059_-	pilus assembly protein PilX	NA	NA	NA	NA
AXY66225.1\|59076_60174_-	pilus assembly protein PilR	NA	NA	NA	NA
AXY66226.1\|60186_61740_-	ATP-binding protein	NA	NA	NA	NA
AXY66227.1\|61750_62203_-	type IV pilus biogenesis protein PilP	NA	NA	NA	NA
AXY66228.1\|62189_63485_-	pilus assembly protein PilO	NA	NA	NA	NA
AXY66229.1\|63477_65160_-	PilN family type IVB pilus formation outer membrane protein	NA	NA	NA	NA
AXY66230.1\|65173_65611_-	pilus assembly protein PilP	NA	NA	NA	NA
AXY66231.1\|65610_66477_-	pili assembly chaperone	NA	NA	NA	NA
AXY66232.1\|66710_67304_-	pili assembly chaperone	NA	NA	NA	NA
AXY66233.1\|67300_67597_-	pilJ	NA	NA	NA	NA
AXY66234.1\|67772_68027_-	pilus assembly protein	NA	NA	NA	NA
AXY66286.1\|67908_68208_+	hypothetical protein	NA	NA	NA	NA
AXY66235.1\|68188_68740_-	hypothetical protein	NA	NA	NA	NA
AXY66236.1\|68784_68997_+	hypothetical protein	NA	NA	NA	NA
AXY66237.1\|68912_69596_-	conjugal transfer protein TraC	NA	NA	NA	NA
AXY66238.1\|69698_69878_+	hypothetical protein	NA	NA	NA	NA
AXY66287.1\|69849_70383_-	transcription termination factor NusG	NA	NA	NA	NA
AXY66239.1\|70388_70511_-	conjugal transfer protein TraA	NA	NA	NA	NA
AXY66240.1\|70824_71061_-	conjugal transfer protein TraA	NA	NA	NA	NA
AXY66241.1\|71029_71293_-	hypothetical protein	Q7M2A7	Enterobacteria_phage	4.7e-08	54.0
AXY66242.1\|71766_71973_+	hypothetical protein	NA	NA	NA	NA
AXY66289.1\|71969_72290_-	hypothetical protein	NA	NA	NA	NA
AXY66288.1\|72265_73297_+	replication initiation protein	NA	NA	NA	NA
AXY66243.1\|73864_73996_-	replication protein RepA4	NA	NA	NA	NA
AXY66244.1\|74206_75199_+	hypothetical protein	NA	NA	NA	NA
AXY66245.1\|75257_75875_-	proQ/FINO family protein	NA	NA	NA	NA
AXY66246.1\|77889_78480_-	hypothetical protein	NA	NA	NA	NA
AXY66247.1\|78479_78737_-	hypothetical protein	NA	NA	NA	NA
AXY66248.1\|79065_80169_+	nucleotide-binding containing TIR-like domain protein	NA	NA	NA	NA
AXY66249.1\|80198_81359_+	DUF4238 domain-containing protein	NA	NA	NA	NA
81308:81367	attL	NA	NA	NA	NA
AXY66250.1\|81370_82075_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AXY66251.1\|82020_82233_-	hypothetical protein	NA	NA	NA	NA
AXY66252.1\|82514_84050_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	6.6e-102	40.7
AXY66253.1\|84066_84822_+	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	6.2e-45	43.8
AXY66254.1\|86362_87796_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.4e-106	50.9
AXY66255.1\|87895_88162_+\|transposase	IS1 family transposase	U5P0U6	Shigella_phage	1.2e-40	93.2
AXY66290.1\|89283_90075_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA22	NA	NA	NA	NA
AXY66256.1\|90223_91237_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AXY66257.1\|91175_91790_+	DUF3330 domain-containing protein	NA	NA	NA	NA
AXY66258.1\|91988_92693_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
92697:93516	attR	NA	NA	NA	NA

DBSCAN-SWA_2

101797 : 107186

Escherichia_phage(33.33%)

integrase

attL 99097:99109|attR 105451:105463

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
99097:99109	attL	NA	NA	NA	NA
AXY66272.1\|101797_102580_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.4e-52	92.0
AXY66273.1\|102717_102993_-	CopG family transcriptional regulator	NA	NA	NA	NA
AXY66274.1\|102986_103631_-	chromosome partitioning protein ParA	A0A222YXS3	Escherichia_phage	1.9e-39	43.0
AXY66275.1\|103859_104831_+	plasmid segregation protein parM	A0A222YXF2	Escherichia_phage	7.4e-67	42.9
AXY66276.1\|104799_105228_+	plasmid stability protein	NA	NA	NA	NA
AXY66277.1\|105232_106504_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.9e-142	60.5
105451:105463	attR	NA	NA	NA	NA
AXY66278.1\|106503_106941_-	peptidase	A0A1W6JNS2	Morganella_phage	8.3e-26	48.4
AXY66279.1\|106937_107186_-	protein ImpC	Q2A098	Sodalis_phage	1.9e-14	48.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP031614

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 4394

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY65971.1\|177_603_-	peptidase	A0A1W6JNS2	Morganella_phage	8.3e-31	49.6
AXY65972.1\|757_1009_+	hypothetical protein	NA	NA	NA	NA
AXY65973.1\|1008_2493_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AXY66152.1\|2726_2957_+	hypothetical protein	NA	NA	NA	NA
AXY65974.1\|3477_3903_+	antirestriction protein	NA	NA	NA	NA
AXY65975.1\|4139_4394_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.2e-11	50.0

DBSCAN-SWA_2

7531 : 15363

Thalassomonas_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY65980.1\|7531_8095_+	SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	1.3e-18	34.1
AXY65981.1\|7989_8310_-	hypothetical protein	NA	NA	NA	NA
AXY65982.1\|8870_9413_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	6.0e-50	76.7
AXY65983.1\|9461_9710_+	DUF905 domain-containing protein	NA	NA	NA	NA
AXY65984.1\|9779_11816_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	6.9e-22	25.4
AXY65985.1\|12309_13038_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
AXY65986.1\|13034_13361_+	theronine dehydrogenase	NA	NA	NA	NA
AXY65987.1\|13416_13791_+	hypothetical protein	NA	NA	NA	NA
AXY65988.1\|13994_15363_+\|transposase	IS3-like element ISKpn8 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.2e-108	95.5

DBSCAN-SWA_3

18673 : 22276

Klebsiella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY65993.1\|18673_19030_+	hypothetical protein	A0A248SL90	Klebsiella_phage	4.4e-25	58.1
AXY65994.1\|19090_19303_+	hypothetical protein	NA	NA	NA	NA
AXY65995.1\|19313_19538_+	hypothetical protein	NA	NA	NA	NA
AXY65996.1\|19618_19939_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	6.8e-09	39.5
AXY65997.1\|19928_20207_+	XRE family transcriptional regulator	O64356	Escherichia_phage	2.5e-07	39.4
AXY65998.1\|20207_20621_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXY65999.1\|21138_21357_-	hypothetical protein	NA	NA	NA	NA
AXY66000.1\|21454_22276_+	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	2.6e-44	40.4

DBSCAN-SWA_4

51775 : 98814

Escherichia_phage(28.57%)

bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY66037.1\|51775_57034_+	conjugative transfer relaxase/helicase TraI	A0A1P8DII4	Virus_Rctr197k	5.2e-05	33.3
AXY66038.1\|57123_57849_+	type-F conjugative transfer system pilin acetylase TraX	NA	NA	NA	NA
AXY66039.1\|57920_58514_+	fertility inhibition protein FinO	NA	NA	NA	NA
AXY66040.1\|58680_59277_+	hypothetical protein	NA	NA	NA	NA
AXY66041.1\|59449_60430_+\|transposase	IS5-like element ISEc68 family transposase	Q38213	Escherichia_phage	1.4e-153	80.9
AXY66042.1\|63128_63605_+	hypothetical protein	NA	NA	NA	NA
AXY66043.1\|64365_65049_+	YecA family protein	NA	NA	NA	NA
AXY66044.1\|65101_68386_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	4.3e-66	27.6
AXY66045.1\|68382_69138_+	M48 family peptidase	NA	NA	NA	NA
AXY66046.1\|69997_71449_+	DUF262 domain-containing protein	NA	NA	NA	NA
AXY66047.1\|71441_73484_+	DUF262 domain-containing protein	NA	NA	NA	NA
AXY66048.1\|79861_80266_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.3e-69	98.5
AXY66049.1\|80262_80610_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
AXY66050.1\|80658_82197_+\|transposase	IS66 family transposase ISKpn24	A0A0P0ZEB3	Stx2-converting_phage	5.1e-280	94.3
AXY66154.1\|82309_82567_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AXY66155.1\|82796_83348_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	6.2e-18	33.1
AXY66051.1\|83667_83946_+	replication regulatory protein RepA	NA	NA	NA	NA
AXY66156.1\|84161_84239_+	RepA leader peptide Tap	NA	NA	NA	NA
AXY66052.1\|84231_85089_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
AXY66053.1\|85393_85582_-	hypothetical protein	NA	NA	NA	NA
AXY66054.1\|85724_85973_-	hypothetical protein	NA	NA	NA	NA
AXY66055.1\|86212_86539_+	hypothetical protein	NA	NA	NA	NA
AXY66056.1\|86989_87805_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
AXY66057.1\|87955_88660_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXY66157.1\|88550_88802_-	hypothetical protein	NA	NA	NA	NA
AXY66058.1\|88788_89553_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AXY66059.1\|89524_89902_-	hypothetical protein	Q6JIG6	Burkholderia_virus	2.0e-07	38.4
AXY66060.1\|89984_90203_-	hypothetical protein	NA	NA	NA	NA
AXY66061.1\|90310_91003_+	hypothetical protein	B1B6L9	Salmonella_phage	1.3e-25	39.1
AXY66062.1\|91105_91462_-	hypothetical protein	NA	NA	NA	NA
AXY66063.1\|91407_91992_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AXY66064.1\|91991_93230_-	MFS transporter	NA	NA	NA	NA
AXY66065.1\|93226_94132_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
AXY66066.1\|95228_95438_+	hypothetical protein	NA	NA	NA	NA
AXY66067.1\|95471_96176_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXY66068.1\|96282_97488_-	chromate efflux transporter	NA	NA	NA	NA
AXY66069.1\|97643_97847_-	hypothetical protein	NA	NA	NA	NA
AXY66070.1\|97865_98045_+	hypothetical protein	NA	NA	NA	NA
AXY66071.1\|97974_98814_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2

DBSCAN-SWA_5

101880 : 134046

Salmonella_phage(25.0%)

integrase,transposase

attL 97649:97662|attR 117957:117970

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
97649:97662	attL	NA	NA	NA	NA
AXY66075.1\|101880_102894_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AXY66076.1\|102832_103447_+	DUF3330 domain-containing protein	NA	NA	NA	NA
AXY66077.1\|103572_104133_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
AXY66159.1\|104717_105641_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	5.1e-166	92.8
AXY66078.1\|105759_106311_+	DUF3833 domain-containing protein	NA	NA	NA	NA
AXY66079.1\|106307_107267_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
AXY66080.1\|107397_108780_-	carbohydrate porin	NA	NA	NA	NA
AXY66081.1\|109011_109194_-	galactoside O-acetyltransferase	NA	NA	NA	NA
AXY66082.1\|109250_110504_-	MFS transporter	NA	NA	NA	NA
AXY66083.1\|110555_113630_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
AXY66084.1\|113751_114834_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	4.4e-185	96.1
AXY66085.1\|115056_115272_+	hypothetical protein	NA	NA	NA	NA
AXY66086.1\|115294_116293_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
AXY66087.1\|116696_117701_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
AXY66088.1\|118160_118481_+	DUF134 domain-containing protein	NA	NA	NA	NA
117957:117970	attR	NA	NA	NA	NA
AXY66089.1\|118455_118917_+	dinitrogenase iron-molybdenum cofactor	NA	NA	NA	NA
AXY66090.1\|119077_119515_+	PaaI family thioesterase	NA	NA	NA	NA
AXY66091.1\|119629_120106_+	DNA starvation/stationary phase protection protein	G0X506	Salmonella_phage	6.7e-05	28.7
AXY66092.1\|120410_120761_-	transcriptional regulator	NA	NA	NA	NA
AXY66093.1\|122842_123484_-	resolvase	NA	NA	NA	NA
AXY66094.1\|124412_125720_-	calmodulin-binding protein	NA	NA	NA	NA
AXY66095.1\|125716_127873_-	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	5.2e-36	41.7
AXY66096.1\|128286_129819_+\|transposase	IS3-like element ISKpn38 family transposase	A0A1B1P773	Bacillus_phage	3.1e-51	39.8
AXY66097.1\|129956_130361_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXY66160.1\|130409_131756_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
AXY66098.1\|131981_132614_+	hypothetical protein	NA	NA	NA	NA
AXY66099.1\|132642_134046_-\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

138991 : 143298

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY66110.1\|138991_139342_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
AXY66111.1\|139391_139754_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
AXY66112.1\|139771_141523_+	arsenical pump-driving ATPase	NA	NA	NA	NA
AXY66113.1\|141570_142860_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
AXY66114.1\|142872_143298_+	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9

DBSCAN-SWA_7

146755 : 147466

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY66161.1\|146755_147466_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0

DBSCAN-SWA_8

151983 : 154061

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY66121.1\|151983_153384_-	sensor histidine kinase	W8CYF6	Bacillus_phage	4.1e-18	26.3
AXY66122.1\|153380_154061_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4

DBSCAN-SWA_9

159154 : 166411

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY66128.1\|159154_159892_+	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
AXY66129.1\|159925_160123_-	DUF2933 domain-containing protein	NA	NA	NA	NA
AXY66130.1\|160163_162611_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.6e-84	35.8
AXY66131.1\|162737_163178_-	hypothetical protein	NA	NA	NA	NA
AXY66132.1\|163264_166411_-	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	4.0e-61	22.5

DBSCAN-SWA_10

169784 : 178288

Bacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY66136.1\|169784_170465_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-31	35.6
AXY66137.1\|170457_171933_+	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.0e-27	30.1
AXY66138.1\|172183_172615_+	silver-binding protein SilE	NA	NA	NA	NA
AXY66164.1\|174043_175250_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
AXY66139.1\|176284_178288_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9

DBSCAN-SWA_11

183596 : 192369

Macacine_betaherpesvirus(50.0%)

integrase,transposase

attL 175971:175985|attR 195997:196011

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
175971:175985	attL	NA	NA	NA	NA
AXY66143.1\|183596_184520_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.1e-175	98.4
AXY66144.1\|184584_184896_+	EAL domain-containing protein	NA	NA	NA	NA
AXY66145.1\|184922_185870_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
AXY66146.1\|187012_187753_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
AXY66147.1\|187935_188133_+	hypothetical protein	NA	NA	NA	NA
AXY66148.1\|188469_189480_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	8.8e-87	55.9
AXY66149.1\|190231_191398_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.4e-224	97.7
AXY66150.1\|191397_192369_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	4.1e-150	86.6
195997:196011	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031613

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031615

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP031614

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection