CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP031959	Phaeobacter sp. LSS9 plasmid unnamed3, complete sequence	0 crisprs	csa3	0
CP031957	Phaeobacter sp. LSS9 plasmid unnamed1, complete sequence	0 crisprs	NA	0
CP031960	Phaeobacter sp. LSS9 plasmid unnamed4, complete sequence	0 crisprs	NA	0
CP031958	Phaeobacter sp. LSS9 plasmid unnamed2, complete sequence	0 crisprs	NA	5
CP031956	Phaeobacter sp. LSS9 chromosome, complete genome	0 crisprs	csa3,WYL,DEDDh,casR,cas3	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 1957

Amsacta_moorei_entomopoxvirus(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT37044.1\|1300_1957_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	7.6e-07	22.2

DBSCAN-SWA_2

5638 : 15901

Bacillus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT37047.1\|5638_6649_+	NAD-dependent epimerase/dehydratase family protein	E3T4Y8	Cafeteria_roenbergensis_virus	5.8e-22	28.7
AXT37048.1\|6950_8255_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	7.6e-83	41.2
AXT37049.1\|8341_9469_-	chromosome partitioning protein ParB	NA	NA	NA	NA
AXT37050.1\|9571_10987_-	chromosome partitioning protein	A0A240F4U1	Ochrobactrum_phage	1.8e-29	27.2
AXT37051.1\|11481_12495_+	RepB family plasmid replication initiator protein	A0A0K1Y6J9	Rhodobacter_phage	4.7e-56	39.6
AXT37052.1\|12743_14147_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AXT37053.1\|14143_15901_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	2.0e-17	23.0

DBSCAN-SWA_3

26717 : 33569

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT37059.1\|26717_31112_+	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	1.6e-44	25.5
AXT37060.1\|31357_32134_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AXT37061.1\|32142_32817_+	amino acid ABC transporter permease	NA	NA	NA	NA
AXT37062.1\|32813_33569_+	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-14	26.8

DBSCAN-SWA_4

42848 : 47658

Escherichia_phage(60.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT37093.1\|42848_43730_+	antibiotic acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	2.4e-08	41.5
AXT37070.1\|43753_44644_-	glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	3.6e-92	57.5
AXT37071.1\|44640_45489_-	dTDP-4-dehydrorhamnose reductase	K7QJU0	Escherichia_phage	4.9e-30	35.8
AXT37072.1\|45485_45959_-	metal-dependent hydrolase	NA	NA	NA	NA
AXT37073.1\|46047_47100_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.4e-90	50.3
AXT37074.1\|47103_47658_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.6e-36	45.1

DBSCAN-SWA_5

51875 : 60195

Rhodobacter_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT37077.1\|51875_53144_+	DUF2793 domain-containing protein	A0A0K1Y6G9	Rhodobacter_phage	2.6e-35	40.7
AXT37078.1\|53174_54596_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.1e-48	28.2
AXT37079.1\|54722_55712_-	GDP-L-fucose synthase	A0A1J0F9I6	Only_Syngen_Nebraska_virus	2.9e-82	52.1
AXT37080.1\|55716_56835_-	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	2.9e-131	65.2
AXT37081.1\|57007_58315_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AXT37082.1\|58311_60195_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	2.1e-17	24.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031956

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

361358 : 373112

Paracoccus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT33796.1\|361358_363455_+	hypothetical protein	Q8VNN5	Enterobacteria_phage	4.1e-46	27.8
AXT33797.1\|363547_363880_+	DUF2190 family protein	NA	NA	NA	NA
AXT33798.1\|363884_364208_+	hypothetical protein	NA	NA	NA	NA
AXT33799.1\|364204_364618_+	hypothetical protein	NA	NA	NA	NA
AXT33800.1\|364668_365094_+	hypothetical protein	NA	NA	NA	NA
AXT33801.1\|365101_365452_+	hypothetical protein	NA	NA	NA	NA
AXT33802.1\|365541_365766_+	hypothetical protein	NA	NA	NA	NA
AXT33803.1\|365767_368383_+	hypothetical protein	A0A0U2BXT9	Paracoccus_phage	1.1e-64	47.1
AXT33804.1\|368379_369039_+	hypothetical protein	NA	NA	NA	NA
AXT33805.1\|369083_369620_+	hypothetical protein	A0A0U2C133	Paracoccus_phage	8.9e-30	38.9
AXT33806.1\|369654_370074_+	hypothetical protein	G8DH57	Emiliania_huxleyi_virus	3.5e-29	51.1
AXT33807.1\|370070_373112_+	DUF1983 domain-containing protein	G8DH58	Emiliania_huxleyi_virus	6.7e-05	46.3

DBSCAN-SWA_2

973636 : 1007972

uncultured_Mediterranean_phage(22.22%)

capsid,head,tail,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT34325.1\|973636_974707_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AXT34326.1\|974810_978539_-	DUF3971 domain-containing protein	NA	NA	NA	NA
AXT34327.1\|978639_979101_+	peroxiredoxin	NA	NA	NA	NA
AXT34328.1\|979242_980124_+	DUF455 family protein	NA	NA	NA	NA
AXT36677.1\|980529_981861_+	M23 family peptidase	A8ATH6	Listeria_phage	2.5e-17	45.0
AXT34329.1\|981850_982393_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
AXT34330.1\|982655_983900_+	calcium-binding protein	NA	NA	NA	NA
AXT34331.1\|984143_985640_+	calcium-binding protein	NA	NA	NA	NA
AXT34332.1\|985726_986734_-	DUF3179 domain-containing protein	NA	NA	NA	NA
AXT34333.1\|986932_987484_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	9.8e-40	57.1
AXT34334.1\|987476_987983_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	4.3e-42	55.0
AXT36678.1\|988164_989355_+	phosphoglycerate kinase	NA	NA	NA	NA
AXT36679.1\|989631_989931_+	septum formation initiator family protein	NA	NA	NA	NA
AXT34335.1\|990233_991247_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
AXT34336.1\|991263_992649_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
AXT34337.1\|992661_993999_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
AXT34338.1\|994181_995069_-	sulfotransferase domain-containing protein	NA	NA	NA	NA
AXT34339.1\|995283_996099_-	serine O-acetyltransferase	NA	NA	NA	NA
AXT34340.1\|996366_996687_-	hypothetical protein	NA	NA	NA	NA
AXT34341.1\|1000654_1001125_-	peptidase	F4YXU4	Roseobacter_phage	6.0e-30	43.0
AXT34342.1\|1001121_1002072_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	8.6e-52	35.8
AXT34343.1\|1002071_1002704_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	7.7e-57	49.0
AXT34344.1\|1002719_1003376_-\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	8.4e-14	35.4
AXT34345.1\|1003368_1003626_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
AXT34346.1\|1003622_1003976_-	gene transfer agent family protein	NA	NA	NA	NA
AXT34347.1\|1003990_1004404_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
AXT34348.1\|1004510_1004924_-	DUF3168 domain-containing protein	NA	NA	NA	NA
AXT34349.1\|1004920_1005292_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AXT34350.1\|1005288_1005939_-	hypothetical protein	NA	NA	NA	NA
AXT34351.1\|1006121_1007306_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	3.7e-60	40.8
AXT36680.1\|1007354_1007972_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.8e-32	54.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031958

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031956

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection