CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP023419	Klebsiella pneumoniae strain 1050 plasmid pKp1050-3, complete sequence	0 crisprs	NA	1
CP023418	Klebsiella pneumoniae strain 1050 plasmid pKp1050-2, complete sequence	0 crisprs	NA	1
CP023416	Klebsiella pneumoniae strain 1050 chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh,DinG,WYL	9
CP023417	Klebsiella pneumoniae strain 1050 plasmid pKp1050-1, complete sequence	0 crisprs	cas3,csa3	3
CP023420	Klebsiella pneumoniae strain 1050 plasmid pKp1050-4, complete sequence	0 crisprs	NA	1
CP023421	Klebsiella pneumoniae strain 1050 plasmid unnamed, complete sequence	0 crisprs	DEDDh	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7755 : 39672

Escherichia_phage(35.29%)

transposase,integrase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT69293.1\|7755_8409_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXT69294.1\|8627_9092_+	mRNA interferase PemK	NA	NA	NA	NA
AXT69295.1\|9184_9619_+	peptidase	A0A1W6JNS2	Morganella_phage	1.2e-29	55.3
AXT69296.1\|9567_10872_+	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	5.1e-111	49.9
AXT69297.1\|10994_11204_-	hypothetical protein	NA	NA	NA	NA
AXT69298.1\|11206_11425_-	hypothetical protein	NA	NA	NA	NA
AXT69299.1\|11469_12153_-	hypothetical protein	NA	NA	NA	NA
AXT69300.1\|12149_12422_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXT69301.1\|12440_13715_-	RelB antitoxin	NA	NA	NA	NA
AXT69302.1\|14241_14586_+	hypothetical protein	NA	NA	NA	NA
AXT69303.1\|14768_15353_+	hypothetical protein	NA	NA	NA	NA
AXT69304.1\|15658_16204_-	hypothetical protein	NA	NA	NA	NA
AXT69305.1\|16344_16806_+	hypothetical protein	NA	NA	NA	NA
AXT69306.1\|16802_17051_+	transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.6e-10	53.0
AXT69307.1\|17043_17631_+	restriction endonuclease	NA	NA	NA	NA
AXT69308.1\|17627_18113_+	hypothetical protein	NA	NA	NA	NA
AXT69309.1\|18109_18358_+	hypothetical protein	NA	NA	NA	NA
AXT69310.1\|18376_19117_+	resolvase	I3WFA4	Macacine_betaherpesvirus	9.5e-22	51.6
AXT69374.1\|19357_20332_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	7.9e-85	52.0
AXT69311.1\|20334_20778_+	plasmid stability family protein	NA	NA	NA	NA
AXT69312.1\|20787_21351_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	3.9e-20	31.3
AXT69313.1\|21729_21975_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
AXT69314.1\|21967_22447_+	hypothetical protein	NA	NA	NA	NA
AXT69315.1\|22475_22886_+	hypothetical protein	NA	NA	NA	NA
AXT69316.1\|23003_23267_+	hypothetical protein	NA	NA	NA	NA
AXT69317.1\|23288_23651_+	DUF3085 domain-containing protein	NA	NA	NA	NA
AXT69318.1\|23772_24222_+	DNA repair protein RadC	NA	NA	NA	NA
AXT69319.1\|24266_24533_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXT69320.1\|24913_25417_-\|transposase	IS1 family transposase	U5P0U6	Shigella_phage	1.8e-93	98.8
AXT69321.1\|25335_25611_-\|transposase	IS1 family transposase	Q71TE9	Escherichia_phage	2.0e-46	98.9
AXT69322.1\|25644_25836_-	hypothetical protein	NA	NA	NA	NA
AXT69323.1\|25889_26549_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	4.2e-130	99.1
AXT69324.1\|26749_27127_-	N-acetyltransferase	NA	NA	NA	NA
AXT69325.1\|27437_28442_-\|transposase	IS110 family transposase IS4321	NA	NA	NA	NA
AXT69326.1\|28795_29500_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXT69327.1\|29390_30350_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.7e-47	40.5
AXT69328.1\|30516_31317_+	subclass B1 metallo-beta-lactamase VIM-1	NA	NA	NA	NA
AXT69329.1\|31424_31979_+	aminoglycoside N-acetyltransferase AAC(6')-Ib4	NA	NA	NA	NA
AXT69330.1\|32109_32346_+	trimethoprim-resistant dihydrofolate reductase DfrB1	A0A0H5ARK7	Pseudomonas_phage	1.6e-12	68.1
AXT69331.1\|32459_33251_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AXT69332.1\|33303_33936_+	type B-2 chloramphenicol O-acetyltransferase CatB2	M1HKK6	Paramecium_bursaria_Chlorella_virus	4.1e-26	44.4
AXT69333.1\|34104_34452_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AXT69334.1\|34445_35285_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AXT69335.1\|35214_35394_-	hypothetical protein	NA	NA	NA	NA
AXT69336.1\|35412_35913_+	N-acetyltransferase	NA	NA	NA	NA
AXT69375.1\|36088_36871_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	2.5e-33	35.0
AXT69337.1\|37617_38322_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXT69338.1\|38548_38977_-	hypothetical protein	NA	NA	NA	NA
AXT69339.1\|38967_39672_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP023418

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9729 : 52072

Salmonella_phage(60.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT69138.1\|9729_10290_+\|transposase	transposase	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
AXT69139.1\|10293_13221_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	99.4
AXT69140.1\|13201_14476_-\|transposase	IS4/IS5 family transposase	NA	NA	NA	NA
AXT69141.1\|14632_15004_+	hypothetical protein	NA	NA	NA	NA
AXT69142.1\|15321_16590_+\|transposase	IS4 family transposase ISApu1	NA	NA	NA	NA
AXT69143.1\|17199_18210_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
AXT69144.1\|18283_18715_+	heme-binding protein	NA	NA	NA	NA
AXT69277.1\|18777_19068_+	DUF1330 domain-containing protein	NA	NA	NA	NA
AXT69145.1\|19219_19690_+	thiol-disulfide isomerase	NA	NA	NA	NA
AXT69146.1\|19693_20206_+	hypothetical protein	NA	NA	NA	NA
AXT69147.1\|20193_21465_+	MFS transporter	NA	NA	NA	NA
AXT69148.1\|21495_21897_-	hypothetical protein	NA	NA	NA	NA
AXT69149.1\|22003_22453_-	hypothetical protein	NA	NA	NA	NA
AXT69150.1\|22540_23113_-	hypothetical protein	NA	NA	NA	NA
AXT69151.1\|23204_24173_-	magnesium transporter	NA	NA	NA	NA
AXT69152.1\|24169_24874_-	glutathione S-transferase	NA	NA	NA	NA
AXT69153.1\|25006_25546_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
AXT69154.1\|25547_25991_-	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA
AXT69155.1\|26137_27097_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXT69156.1\|27241_28474_+	osmotically inducible protein C	NA	NA	NA	NA
AXT69157.1\|28476_29070_+	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
AXT69158.1\|29069_30095_+	oxidoreductase	NA	NA	NA	NA
AXT69159.1\|30491_31067_-	MarR family transcriptional regulator	NA	NA	NA	NA
AXT69278.1\|31302_31485_-	hypothetical protein	NA	NA	NA	NA
AXT69160.1\|31543_32032_-	hypothetical protein	NA	NA	NA	NA
AXT69161.1\|32302_32689_+	hypothetical protein	NA	NA	NA	NA
AXT69162.1\|32727_33687_-	hypothetical protein	NA	NA	NA	NA
AXT69279.1\|33713_34247_-	MarR family transcriptional regulator	NA	NA	NA	NA
AXT69163.1\|34503_35400_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXT69164.1\|35396_35636_-	DUF2274 domain-containing protein	NA	NA	NA	NA
AXT69165.1\|35635_36856_-	conjugal transfer protein TraI	NA	NA	NA	NA
AXT69166.1\|36852_37902_-	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
AXT69167.1\|38496_39501_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXT69168.1\|39579_42546_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.2
AXT69169.1\|42704_42995_+	nucleotidyltransferase	NA	NA	NA	NA
AXT69170.1\|42991_43393_+	DUF86 domain-containing protein	NA	NA	NA	NA
AXT69171.1\|43382_43739_+	cupin domain-containing protein	NA	NA	NA	NA
AXT69172.1\|43993_44320_+	hypothetical protein	NA	NA	NA	NA
AXT69173.1\|44316_44817_+\|transposase	transposase	NA	NA	NA	NA
AXT69174.1\|44813_45185_+	hypothetical protein	NA	NA	NA	NA
AXT69175.1\|45178_45736_+	DNA invertase	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
AXT69176.1\|45814_46819_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AXT69177.1\|50647_50848_-	glycogen synthesis protein GlgS	NA	NA	NA	NA
AXT69280.1\|51148_52072_-\|transposase	IS5/IS1182 family transposase	Q9MCT5	Escherichia_phage	1.1e-176	99.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP023416

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CRISPR-Cas detection and classification

Crispr_ID: CP023416_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023416_1

4475377-4475471

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023416_1

>merge|CP023416|1|4475377-4475471|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP023416|1|1|4475377-4475471|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP023416.1\|AXT67877.1\|4477227_4477926_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP023416.1\|AXT67869.1\|4464495_4465998_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP023416.1\|AXT67872.1\|4469551_4472458_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP023416.1\|AXT67884.1\|4484916_4485765_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP023416.1\|AXT67873.1\|4472470_4473130_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP023416.1\|AXT67883.1\|4484534_4484912_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP023416.1\|AXT67881.1\|4482724_4483714_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP023416.1\|AXT67880.1\|4481432_4482719_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP023416.1\|AXT67867.1\|4461592_4462438_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP023416.1\|AXT67879.1\|4479029_4481378_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP023416.1\|AXT67870.1\|4466135_4466831_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP023416.1\|AXT67875.1\|4473923_4475288_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP023416.1\|AXT67874.1\|4473204_4473744_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP023416.1\|AXT67882.1\|4483710_4484532_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP023416.1\|AXT68828.1\|4473706_4473895_+\|hypothetical-protein	unknown	unknown	unknown
CP023416.1\|AXT67885.1\|4486016_4486496_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP023416.1\|AXT67871.1\|4467006_4469364_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP023416.1\|AXT67876.1\|4475612_4477238_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP023416.1\|AXT67868.1\|4462775_4464485_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP023416.1\|AXT67878.1\|4477958_4478786_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512

Protein	Function_ID	Function_description	E-value
CP023416.1\|AXT67877.1\|4477227_4477926_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
CP023416.1\|AXT67869.1\|4464495_4465998_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP023416.1\|AXT67872.1\|4469551_4472458_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP023416.1\|AXT67884.1\|4484916_4485765_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP023416.1\|AXT67871.1\|4467006_4469364_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP023416.1\|AXT67883.1\|4484534_4484912_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP023416.1\|AXT67881.1\|4482724_4483714_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP023416.1\|AXT67880.1\|4481432_4482719_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP023416.1\|AXT67867.1\|4461592_4462438_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP023416.1\|AXT67879.1\|4479029_4481378_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP023416.1\|AXT67870.1\|4466135_4466831_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP023416.1\|AXT67875.1\|4473923_4475288_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP023416.1\|AXT67874.1\|4473204_4473744_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
CP023416.1\|AXT67882.1\|4483710_4484532_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP023416.1\|AXT67885.1\|4486016_4486496_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	9.80354e-127
CP023416.1\|AXT67873.1\|4472470_4473130_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
CP023416.1\|AXT67876.1\|4475612_4477238_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
CP023416.1\|AXT67868.1\|4462775_4464485_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP023416.1\|AXT67878.1\|4477958_4478786_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164

>CP023416.1|AXT67875.1|4473923_4475288_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP023416.1|AXT68828.1|4473706_4473895_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>CP023416.1|AXT67874.1|4473204_4473744_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP023416.1|AXT67873.1|4472470_4473130_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP023416.1|AXT67872.1|4469551_4472458_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP023416.1|AXT67871.1|4467006_4469364_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP023416.1|AXT67870.1|4466135_4466831_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP023416.1|AXT67869.1|4464495_4465998_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP023416.1|AXT67868.1|4462775_4464485_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP023416.1|AXT67867.1|4461592_4462438_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP023416.1|AXT67876.1|4475612_4477238_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>CP023416.1|AXT67877.1|4477227_4477926_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP023416.1|AXT67878.1|4477958_4478786_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP023416.1|AXT67879.1|4479029_4481378_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP023416.1|AXT67880.1|4481432_4482719_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP023416.1|AXT67881.1|4482724_4483714_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP023416.1|AXT67882.1|4483710_4484532_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP023416.1|AXT67883.1|4484534_4484912_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP023416.1|AXT67884.1|4484916_4485765_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP023416.1|AXT67885.1|4486016_4486496_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVHWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

649099 : 669018

uncultured_Caudovirales_phage(61.54%)

terminase,capsid,portal,head,protease,tail,integrase

attL 649024:649049|attR 666304:666329

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
649024:649049	attL	NA	NA	NA	NA
AXT64386.1\|649099_650524_+\|integrase	integrase	H7BV31	unidentified_phage	3.3e-07	24.9
AXT64387.1\|650520_651150_+	hypothetical protein	NA	NA	NA	NA
AXT64388.1\|651293_651515_+	DNA-binding protein	NA	NA	NA	NA
AXT64389.1\|651535_652219_+	toxin Bro	A0A1B5FPC0	Escherichia_phage	6.0e-23	44.8
AXT68661.1\|652891_653083_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
AXT64390.1\|653222_653411_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AXT64391.1\|653403_653598_+	hypothetical protein	NA	NA	NA	NA
AXT64392.1\|653594_653807_+	hypothetical protein	NA	NA	NA	NA
AXT64393.1\|653790_655542_+	DNA primase	Q7M2A8	Enterobacteria_phage	6.5e-130	51.4
AXT64394.1\|655844_656027_+	hypothetical protein	NA	NA	NA	NA
AXT64395.1\|656261_657422_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	4.5e-204	94.0
AXT64396.1\|657473_658034_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	6.8e-97	93.5
AXT68662.1\|658044_659262_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	2.1e-223	93.9
AXT64397.1\|659258_659597_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.6e-53	92.0
AXT64398.1\|659593_659887_+	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-47	92.8
AXT64399.1\|659886_660330_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.5e-78	91.2
AXT64400.1\|660604_660961_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	2.7e-51	83.1
AXT64401.1\|660944_662606_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	97.8
AXT64402.1\|662619_666027_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.6e-185	43.2
AXT64403.1\|666082_666274_+	hypothetical protein	NA	NA	NA	NA
AXT64404.1\|666570_667077_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
666304:666329	attR	NA	NA	NA	NA
AXT64405.1\|667176_669018_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7

DBSCAN-SWA_2

1247226 : 1302902

Salmonella_phage(23.64%)

terminase,holin,tRNA,tail,coat,transposase,integrase

attL 1245905:1245921|attR 1279569:1279585

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1245905:1245921	attL	NA	NA	NA	NA
AXT64939.1\|1247226_1248312_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AXT64940.1\|1248369_1249059_-	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	1.3e-57	53.0
AXT64941.1\|1249371_1249755_+	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	4.0e-32	79.3
AXT64942.1\|1249800_1251132_-	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	6.2e-48	31.9
AXT64943.1\|1251263_1252001_+\|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	NA	NA	NA	NA
AXT64944.1\|1251985_1253605_-	L-aspartate oxidase	NA	NA	NA	NA
AXT64945.1\|1254025_1254601_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
AXT64946.1\|1254633_1255284_+	anti-sigma-E factor RseA	NA	NA	NA	NA
AXT64947.1\|1255283_1256240_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
AXT64948.1\|1256236_1256716_+	SoxR reducing system protein RseC	NA	NA	NA	NA
AXT64949.1\|1257147_1258377_+\|integrase	integrase	H6WRW7	Salmonella_phage	1.3e-238	96.3
AXT64950.1\|1258354_1258630_-	excisionase	H6WRW8	Salmonella_phage	9.2e-31	72.7
AXT68684.1\|1258667_1258907_-	DUF4060 domain-containing protein	M9P0E0	Enterobacteria_phage	3.2e-24	71.8
AXT64951.1\|1258914_1259223_-	hypothetical protein	I6PD68	Cronobacter_phage	4.2e-24	56.9
AXT64952.1\|1259936_1261025_-	enterohemolysin	H6WRX0	Salmonella_phage	1.4e-106	56.0
AXT64953.1\|1261037_1264136_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	6.0e-296	57.6
AXT64954.1\|1264273_1264429_-	hypothetical protein	K7PGY4	Enterobacteria_phage	2.0e-14	71.2
AXT64955.1\|1264437_1264629_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AXT68685.1\|1265094_1265298_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	1.1e-20	76.1
AXT64956.1\|1265326_1265737_-	hypothetical protein	NA	NA	NA	NA
AXT64957.1\|1265863_1266250_-	transcriptional regulator	A0A0M4R5D1	Salmonella_phage	1.0e-56	92.9
AXT64958.1\|1266353_1266584_+	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	3.2e-29	85.9
AXT64959.1\|1266586_1267150_+	hypothetical protein	K7P7P2	Enterobacteria_phage	2.1e-29	44.1
AXT64960.1\|1267494_1267683_+	hypothetical protein	NA	NA	NA	NA
AXT64961.1\|1267697_1268606_+	DNA-binding protein	V5URT9	Shigella_phage	2.9e-89	49.2
AXT64962.1\|1268608_1269358_+	DNA replication protein DnaC	H6WRX8	Salmonella_phage	3.1e-121	84.3
AXT64963.1\|1269365_1269701_+	DUF977 domain-containing protein	H6WRX9	Salmonella_phage	7.6e-11	43.0
AXT64964.1\|1269693_1270479_+	hypothetical protein	C7BGF1	Burkholderia_phage	1.6e-64	52.9
AXT64965.1\|1270606_1271020_+	hypothetical protein	T1SBJ7	Salmonella_phage	1.4e-19	52.8
AXT64966.1\|1271016_1271223_+	hypothetical protein	R9TRD3	Aeromonas_phage	1.6e-32	100.0
AXT64967.1\|1271761_1272730_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXT64968.1\|1272918_1273212_+	hypothetical protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
AXT64969.1\|1273208_1273865_+	DUF551 domain-containing protein	R9TQX3	Aeromonas_phage	4.7e-49	51.7
AXT64970.1\|1273857_1274109_+	hypothetical protein	A0A2P1MXF0	Escherichia_phage	5.3e-09	42.7
AXT64971.1\|1274877_1275111_+	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	2.9e-25	68.8
AXT64972.1\|1275216_1275465_+	hypothetical protein	K7PHG9	Enterobacteria_phage	5.0e-28	67.9
AXT64973.1\|1275499_1276096_+	DUF1367 domain-containing protein	K7PKS6	Enterobacteria_phage	1.9e-89	79.6
AXT64974.1\|1276095_1276302_+	hypothetical protein	H6WRY8	Salmonella_phage	2.8e-24	74.2
AXT64975.1\|1276304_1276601_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	1.2e-36	72.9
AXT64976.1\|1276597_1276954_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.5e-41	64.1
AXT64977.1\|1276950_1277073_+	hypothetical protein	NA	NA	NA	NA
AXT64978.1\|1277069_1277891_+	antitermination protein	K7PKS8	Enterobacteria_phage	1.4e-98	67.5
AXT64979.1\|1278136_1278448_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	3.8e-49	100.0
AXT64980.1\|1278444_1278984_+	hypothetical protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
AXT64981.1\|1278980_1279328_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.8e-39	81.7
AXT64982.1\|1279324_1279600_+	hypothetical protein	A0A286N2Q8	Klebsiella_phage	5.8e-09	90.1
1279569:1279585	attR	NA	NA	NA	NA
AXT64983.1\|1279550_1279745_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	3.2e-22	82.8
AXT64984.1\|1279835_1280120_-	hypothetical protein	NA	NA	NA	NA
AXT64985.1\|1280252_1280525_+	hypothetical protein	NA	NA	NA	NA
AXT64986.1\|1280457_1280709_-	hypothetical protein	NA	NA	NA	NA
AXT64987.1\|1280835_1281036_+	hypothetical protein	A0A1L6Z528	Klebsiella_phage	3.4e-19	75.0
AXT64988.1\|1281434_1281671_+	DUF2560 domain-containing protein	A0A286N2R1	Klebsiella_phage	2.2e-17	64.1
AXT64989.1\|1281729_1281918_+	hypothetical protein	NA	NA	NA	NA
AXT64990.1\|1281921_1282926_+\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	2.8e-37	45.0
AXT64991.1\|1282903_1284208_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	4.8e-146	59.8
AXT64992.1\|1284212_1285637_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	1.5e-193	71.5
AXT64993.1\|1285620_1286733_+	hypothetical protein	I6PD76	Cronobacter_phage	2.1e-110	53.8
AXT64994.1\|1286839_1287604_+	hypothetical protein	G8C7P6	Escherichia_phage	1.1e-78	61.8
AXT64995.1\|1287691_1288828_+\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	6.9e-157	74.9
AXT64996.1\|1288877_1289162_+	hypothetical protein	NA	NA	NA	NA
AXT64997.1\|1289165_1289576_+	protein singed	A0A0H5AUF0	Pseudomonas_phage	6.0e-10	40.4
AXT64998.1\|1289577_1289961_+	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	5.4e-21	45.2
AXT64999.1\|1289962_1290514_+	hypothetical protein	G8C7Q1	Escherichia_phage	6.6e-28	39.8
AXT65000.1\|1290510_1290903_+	electron transfer flavoprotein subunit beta	A0A059VK45	Pseudomonas_phage	2.4e-16	34.6
AXT65001.1\|1290926_1292099_+	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	3.2e-24	27.3
AXT65002.1\|1292152_1292635_+	hypothetical protein	NA	NA	NA	NA
AXT65003.1\|1292802_1292970_+	hypothetical protein	NA	NA	NA	NA
AXT65004.1\|1293146_1293677_+	hypothetical protein	A0A2H4FQV0	Salmonella_phage	6.1e-63	68.4
AXT65005.1\|1293758_1294256_+	hypothetical protein	NA	NA	NA	NA
AXT65006.1\|1294301_1294664_+	hypothetical protein	S4TR42	Salmonella_phage	2.3e-05	72.4
AXT65007.1\|1294759_1298326_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	7.4e-80	29.7
AXT65008.1\|1298325_1298790_+	hypothetical protein	A0A286S298	Klebsiella_phage	3.9e-58	68.4
AXT65009.1\|1298970_1299453_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	1.8e-82	95.0
AXT65010.1\|1299462_1299843_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.5e-55	77.0
AXT65011.1\|1299839_1302902_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	93.8

DBSCAN-SWA_3

1367575 : 1414269

Salmonella_phage(29.55%)

terminase,tRNA,tail,transposase,integrase

attL 1378443:1378469|attR 1424225:1424251

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT65063.1\|1367575_1368850_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
AXT65064.1\|1368884_1369505_+	hypothetical protein	NA	NA	NA	NA
AXT65065.1\|1369515_1370694_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
AXT65066.1\|1370807_1372286_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
AXT65067.1\|1372403_1373483_+	oxidoreductase	NA	NA	NA	NA
AXT65068.1\|1373532_1373751_+	hypothetical protein	NA	NA	NA	NA
AXT65069.1\|1373734_1375126_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	6.3e-35	33.0
AXT65070.1\|1375284_1376751_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
AXT65071.1\|1376818_1378396_+	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
1378443:1378469	attL	NA	NA	NA	NA
AXT65072.1\|1378587_1379838_+\|integrase	integrase	A0A1X9TCT6	Enterobacter_phage	1.4e-206	85.3
AXT65073.1\|1379854_1380046_-	hypothetical protein	NA	NA	NA	NA
AXT65074.1\|1380042_1380636_-	adenine methylase	T1SA14	Salmonella_phage	4.3e-110	92.9
AXT65075.1\|1380632_1380791_-	DUF1317 domain-containing protein	T1SAR0	Salmonella_phage	1.9e-17	78.8
AXT65076.1\|1380783_1381077_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
AXT65077.1\|1381186_1381435_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
AXT65078.1\|1381483_1382419_-	recombinase RecT	A0A193GYL3	Enterobacter_phage	4.4e-133	72.2
AXT65079.1\|1382415_1383237_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.6e-134	82.4
AXT65080.1\|1383233_1383533_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	6.1e-20	54.5
AXT68688.1\|1383540_1384572_-	hypothetical protein	A0A059VK18	Pseudomonas_phage	9.4e-36	51.6
AXT65081.1\|1384975_1385557_-	XRE family transcriptional regulator	Q858D7	Salmonella_phage	4.6e-64	64.3
AXT65082.1\|1385711_1385945_+	hypothetical protein	T1SAR5	Salmonella_phage	1.2e-23	66.2
AXT68689.1\|1386091_1386295_+	hypothetical protein	Q858D5	Salmonella_phage	2.3e-23	82.1
AXT65083.1\|1386322_1387093_+	DNA replication domain protein	G9L6A8	Escherichia_phage	5.5e-57	91.7
AXT65084.1\|1387218_1387563_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	4.1e-52	85.1
AXT65085.1\|1387755_1388178_+	hypothetical protein	NA	NA	NA	NA
AXT65086.1\|1388174_1388381_+	hypothetical protein	R9TRD3	Aeromonas_phage	4.0e-31	95.6
AXT65087.1\|1388377_1388773_+	hypothetical protein	G8C7U4	Escherichia_phage	8.8e-59	80.6
AXT65088.1\|1388765_1389254_+	hypothetical protein	A0A248XD51	Klebsiella_phage	1.8e-21	58.7
AXT65089.1\|1389265_1390234_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXT65090.1\|1390422_1390635_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	9.6e-12	45.5
AXT68690.1\|1390817_1391384_+	hypothetical protein	A5LH60	Enterobacteria_phage	3.5e-08	36.8
AXT65091.1\|1391383_1391572_+	hypothetical protein	R9TNE4	Aeromonas_phage	5.5e-19	75.0
AXT65092.1\|1391564_1391903_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.1e-44	80.0
AXT68691.1\|1391977_1392235_+	lF-82	NA	NA	NA	NA
AXT68692.1\|1392312_1392897_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	1.0e-87	87.0
AXT65093.1\|1392893_1394369_+\|terminase	terminase	Q858H3	Salmonella_phage	2.4e-279	92.7
AXT65094.1\|1394412_1394784_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	5.2e-61	94.3
AXT65095.1\|1394834_1395065_+	hypothetical protein	NA	NA	NA	NA
AXT65096.1\|1395369_1395558_+	hypothetical protein	NA	NA	NA	NA
AXT65097.1\|1395577_1395784_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
AXT65098.1\|1395798_1397481_+\|tail	phage tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	3.0e-265	84.8
AXT65099.1\|1397477_1397777_+	hypothetical protein	T1SBI9	Salmonella_phage	3.1e-32	68.4
AXT65100.1\|1397773_1398097_+\|tRNA	phenylalanyl-tRNA synthetase subunit beta	NA	NA	NA	NA
AXT65101.1\|1398108_1398798_+	peptidase	G9L6C4	Escherichia_phage	5.3e-67	81.4
AXT65102.1\|1398812_1399799_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	1.9e-179	93.9
AXT65103.1\|1399852_1400290_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	6.3e-66	91.0
AXT65104.1\|1400300_1400642_+	hypothetical protein	G9L6C7	Escherichia_phage	8.2e-37	71.7
AXT65105.1\|1400692_1401016_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
AXT65106.1\|1401015_1401621_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	4.3e-89	79.0
AXT65107.1\|1401620_1404098_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.4
AXT65108.1\|1404097_1404562_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
AXT65109.1\|1404561_1405101_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	8.0e-71	80.0
AXT65110.1\|1405111_1407628_+	hypothetical protein	T1SBJ1	Salmonella_phage	0.0e+00	81.4
AXT65111.1\|1407624_1409430_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	1.3e-237	73.3
AXT65112.1\|1409433_1411908_+	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	86.9
AXT65113.1\|1412106_1412403_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	4.4e-47	94.8
AXT65114.1\|1412437_1412590_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	1.9e-14	85.7
AXT68693.1\|1412688_1412949_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	7.9e-24	62.8
AXT65115.1\|1413048_1414269_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
1424225:1424251	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1752613 : 1759518

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT68705.1\|1752613_1753477_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
AXT65407.1\|1753487_1754261_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
AXT68706.1\|1754501_1755395_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	3.6e-15	29.8
AXT65408.1\|1755640_1757002_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
AXT65409.1\|1757320_1758043_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AXT65410.1\|1758039_1759518_-	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_5

1803296 : 1818558

Hokovirus(18.18%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT65441.1\|1803296_1804703_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
AXT65442.1\|1804944_1806360_+	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
AXT68708.1\|1806382_1807753_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	6.4e-32	26.0
AXT65443.1\|1807909_1808974_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.5e-105	55.0
AXT65444.1\|1809000_1809870_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.7e-110	66.7
AXT65445.1\|1809901_1810792_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
AXT65446.1\|1810806_1811361_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.5e-51	57.6
AXT65447.1\|1811541_1812708_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	5.3e-112	54.7
AXT65448.1\|1813654_1814659_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.8e-31	29.5
AXT65449.1\|1814614_1814809_+	hypothetical protein	NA	NA	NA	NA
AXT65450.1\|1815171_1815456_+	hypothetical protein	NA	NA	NA	NA
AXT65451.1\|1815737_1817153_+	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
AXT68709.1\|1817175_1818558_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	4.2e-31	25.8

DBSCAN-SWA_6

2032388 : 2115068

Salmonella_phage(37.74%)

head,tail,lysis,transposase,integrase,plate

attL 2034057:2034072|attR 2069947:2069962

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT65654.1\|2032388_2034032_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.7e-136	50.4
2034057:2034072	attL	NA	NA	NA	NA
AXT65655.1\|2034081_2034558_-	N-acetyltransferase	NA	NA	NA	NA
AXT65656.1\|2034656_2035583_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXT65657.1\|2035886_2037182_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-62	36.8
AXT65658.1\|2037196_2038003_+	molybdenum ABC transporter substrate-binding protein	NA	NA	NA	NA
AXT65659.1\|2038243_2039506_-\|integrase	integrase	A0A286S1S8	Klebsiella_phage	1.7e-233	95.0
AXT65660.1\|2039553_2039796_-	excisionase	A0A286S2A4	Klebsiella_phage	2.0e-29	81.3
AXT65661.1\|2039799_2040018_-	conjugal transfer protein TraR	A0A0K2FI84	Escherichia_phage	8.6e-08	50.9
AXT65662.1\|2040014_2040764_-	hypothetical protein	A0A077KCB2	Edwardsiella_phage	6.7e-84	59.9
AXT65663.1\|2040760_2040985_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.5e-18	60.8
AXT65664.1\|2040981_2041209_-	hypothetical protein	A0A291LBA3	Klebsiella_phage	2.1e-09	48.4
AXT65665.1\|2041510_2041804_-	hypothetical protein	NA	NA	NA	NA
AXT65666.1\|2042437_2042656_-	hypothetical protein	NA	NA	NA	NA
AXT65667.1\|2043132_2043729_-	XRE family transcriptional regulator	K7P850	Enterobacteria_phage	5.3e-07	27.1
AXT65668.1\|2043837_2044050_+	transcriptional regulator	NA	NA	NA	NA
AXT65669.1\|2044070_2044292_+	transcriptional regulator	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
AXT65670.1\|2044487_2044742_+	hypothetical protein	NA	NA	NA	NA
AXT65671.1\|2044738_2045833_+	hypothetical protein	K7PLZ7	Enterobacterial_phage	3.7e-30	51.1
AXT65672.1\|2045859_2046255_+	hypothetical protein	NA	NA	NA	NA
AXT65673.1\|2046254_2046476_+	hypothetical protein	NA	NA	NA	NA
AXT65674.1\|2046468_2047254_+	hypothetical protein	A4JX52	Burkholderia_virus	9.0e-63	51.0
AXT68720.1\|2047537_2048116_+	hypothetical protein	A0A0M4RTV1	Salmonella_phage	9.6e-38	61.8
AXT65675.1\|2048105_2048501_+	hypothetical protein	A0A1I9LJU8	Stx_converting_phage	4.4e-50	75.6
AXT65676.1\|2048547_2048817_+	hypothetical protein	H6WRY4	Salmonella_phage	6.0e-35	80.7
AXT65677.1\|2049371_2049680_+	hypothetical protein	Q6V7S4	Burkholderia_virus	1.2e-23	57.6
AXT65678.1\|2049672_2050332_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.7e-100	78.1
AXT65679.1\|2050328_2050907_+	hypothetical protein	A0A0U2S606	Escherichia_phage	2.7e-48	55.6
AXT65680.1\|2051003_2051279_-	hypothetical protein	NA	NA	NA	NA
AXT65681.1\|2051277_2051475_+	hypothetical protein	NA	NA	NA	NA
AXT65682.1\|2051579_2052626_+\|transposase	IS481 family transposase	A0A0M3LR35	Mannheimia_phage	1.3e-05	21.9
AXT65683.1\|2053098_2053347_+\|lysis	lysis protein	NA	NA	NA	NA
AXT65684.1\|2053349_2053880_+	lysozyme	G9L6J6	Escherichia_phage	7.1e-80	79.7
AXT65685.1\|2053876_2054266_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	5.3e-24	49.2
AXT65686.1\|2054509_2054740_+	hypothetical protein	NA	NA	NA	NA
AXT65687.1\|2054821_2055457_+	hypothetical protein	I6S676	Salmonella_phage	3.6e-102	82.1
AXT65688.1\|2055488_2055962_+	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	1.7e-53	69.0
AXT65689.1\|2056222_2056414_-	DUF1508 domain-containing protein	NA	NA	NA	NA
AXT68721.1\|2056508_2058122_+	TerL protein	A0A0M5M1R6	Salmonella_phage	8.9e-275	82.9
AXT65690.1\|2058125_2059577_+	hypothetical protein	A0A0M4S6U1	Salmonella_phage	3.2e-191	69.0
AXT68722.1\|2059632_2060181_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	1.0e-49	56.9
AXT65691.1\|2060232_2061435_+	hypothetical protein	A0A0M4R5A6	Salmonella_phage	3.2e-112	54.9
AXT65692.1\|2061438_2061933_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
AXT65693.1\|2061944_2062883_+	hypothetical protein	A0A2H4J191	uncultured_Caudovirales_phage	3.5e-138	77.2
AXT65694.1\|2062922_2063204_+	hypothetical protein	NA	NA	NA	NA
AXT65695.1\|2063172_2063592_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	5.7e-40	60.7
AXT65696.1\|2063588_2064095_+	hypothetical protein	NA	NA	NA	NA
AXT65697.1\|2064094_2064499_+\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-43	71.5
AXT65698.1\|2064491_2065043_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	4.4e-40	44.4
AXT65699.1\|2065044_2066196_+	DUF3383 domain-containing protein	A0A0M4RD26	Salmonella_phage	2.1e-177	81.5
AXT65700.1\|2066206_2066647_+	DUF3277 domain-containing protein	A0A0M5M1K6	Salmonella_phage	2.1e-61	79.5
AXT65701.1\|2066650_2067100_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.1e-36	55.3
AXT68723.1\|2067141_2067294_+	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	1.4e-17	84.0
AXT65702.1\|2067283_2069206_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	6.2e-190	56.0
AXT65703.1\|2069205_2069781_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	5.0e-63	66.0
AXT68724.1\|2069856_2070084_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	6.2e-17	50.0
2069947:2069962	attR	NA	NA	NA	NA
AXT65704.1\|2070086_2071151_+	hypothetical protein	A0A0M4QX01	Salmonella_phage	1.1e-135	67.9
AXT65705.1\|2071150_2071483_+	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.0e-23	70.9
AXT65706.1\|2071650_2071869_+	hypothetical protein	NA	NA	NA	NA
AXT65707.1\|2071908_2072676_+\|plate	phage baseplate protein	A0A0M5M1K7	Salmonella_phage	4.8e-93	70.5
AXT65708.1\|2072675_2073029_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	1.8e-50	79.5
AXT65709.1\|2073028_2074228_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.2e-160	74.8
AXT65710.1\|2074224_2074998_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	5.3e-68	50.6
AXT65711.1\|2074997_2075771_+	hypothetical protein	A0A248SL44	Klebsiella_phage	3.0e-26	49.7
AXT65712.1\|2078104_2079487_+	hypothetical protein	NA	NA	NA	NA
AXT65713.1\|2079592_2079832_+	hypothetical protein	K7P7N3	Enterobacteria_phage	6.1e-15	50.6
AXT65714.1\|2079831_2080149_+	hypothetical protein	I6PCW5	Cronobacter_phage	5.3e-22	53.7
AXT65715.1\|2081123_2081606_-	cold-shock protein	NA	NA	NA	NA
AXT65716.1\|2081796_2082495_+	pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	6.9e-06	27.2
AXT68725.1\|2082520_2083060_-	DUF2058 domain-containing protein	NA	NA	NA	NA
AXT65717.1\|2083174_2083504_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
AXT65718.1\|2083844_2084024_-	hypothetical protein	NA	NA	NA	NA
AXT65719.1\|2084071_2085412_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AXT65720.1\|2085408_2086062_+	type VI secretion system protein ImpK	NA	NA	NA	NA
AXT65721.1\|2086065_2087763_+	cell envelope biogenesis protein OmpA	NA	NA	NA	NA
AXT65722.1\|2088224_2090711_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
AXT65723.1\|2090734_2092090_+	S-type Pyocin	NA	NA	NA	NA
AXT65724.1\|2092090_2092600_+	hypothetical protein	NA	NA	NA	NA
AXT65725.1\|2093400_2094756_+	S-type Pyocin	NA	NA	NA	NA
AXT65726.1\|2094756_2095266_+	hypothetical protein	NA	NA	NA	NA
AXT65727.1\|2095262_2095769_+	hypothetical protein	NA	NA	NA	NA
AXT65728.1\|2096005_2096515_+	hypothetical protein	NA	NA	NA	NA
AXT65729.1\|2096808_2098164_+	S-type Pyocin	NA	NA	NA	NA
AXT65730.1\|2098164_2098674_+	hypothetical protein	NA	NA	NA	NA
AXT65731.1\|2098670_2099177_+	hypothetical protein	NA	NA	NA	NA
AXT65732.1\|2099222_2099453_+	hypothetical protein	NA	NA	NA	NA
AXT65733.1\|2099558_2100995_+	hypothetical protein	NA	NA	NA	NA
AXT65734.1\|2101016_2101910_+	sulfatase modifying factor 1	A0A7H6	Microcystis_virus	1.8e-14	31.0
AXT65735.1\|2102093_2102987_+	sulfatase modifying factor 1	A0A075BSL8	Microcystis_phage	2.8e-12	27.4
AXT65736.1\|2103162_2104056_+	sulfatase modifying factor 1	A0A075BSL8	Microcystis_phage	2.2e-12	27.1
AXT65737.1\|2104231_2105122_+	sulfatase modifying factor 1	A0A7H6	Microcystis_virus	4.1e-11	29.8
AXT65738.1\|2105257_2105599_+	hypothetical protein	NA	NA	NA	NA
AXT65739.1\|2105800_2106043_+	hypothetical protein	NA	NA	NA	NA
AXT65740.1\|2106340_2106607_+	PAAR domain-containing protein	NA	NA	NA	NA
AXT65741.1\|2106610_2107768_+	type VI secretion protein	NA	NA	NA	NA
AXT65742.1\|2107751_2111162_+	type VI secretion protein VasK	NA	NA	NA	NA
AXT65743.1\|2111295_2113059_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AXT65744.1\|2113058_2114105_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AXT68726.1\|2114085_2114622_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AXT65745.1\|2114624_2115068_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_7

2770159 : 2781046

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT66360.1\|2770159_2773267_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
AXT66361.1\|2773321_2774587_+	MFS transporter	NA	NA	NA	NA
AXT66362.1\|2774617_2775706_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
AXT66363.1\|2775792_2776053_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AXT66364.1\|2776350_2777211_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
AXT66365.1\|2777231_2777993_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AXT66366.1\|2778253_2779156_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
AXT66367.1\|2779167_2780433_+	hypothetical protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
AXT66368.1\|2780425_2781046_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_8

3168038 : 3256289

Klebsiella_phage(41.3%)

terminase,holin,capsid,portal,head,tRNA,tail,transposase,integrase

attL 3194854:3194868|attR 3254100:3254114

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT66721.1\|3168038_3168539_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
AXT66722.1\|3168655_3169102_+	DUF441 family protein	NA	NA	NA	NA
AXT68770.1\|3169085_3169877_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXT66723.1\|3169978_3171163_+	cyanate MFS transporter	NA	NA	NA	NA
AXT66724.1\|3171194_3171887_-	hypothetical protein	NA	NA	NA	NA
AXT66725.1\|3172032_3172542_+	DUF523 domain-containing protein	NA	NA	NA	NA
AXT66726.1\|3172528_3172885_+	DUF488 domain-containing protein	NA	NA	NA	NA
AXT66727.1\|3172874_3173114_-	DUF333 domain-containing protein	NA	NA	NA	NA
AXT66728.1\|3173415_3174429_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
AXT66729.1\|3174486_3174588_+	hypothetical protein	NA	NA	NA	NA
AXT68771.1\|3174545_3174662_+	hypothetical protein	NA	NA	NA	NA
AXT66730.1\|3174779_3174905_+	hypothetical protein	NA	NA	NA	NA
AXT66731.1\|3174964_3175228_-	DUF2534 domain-containing protein	NA	NA	NA	NA
AXT66732.1\|3175358_3175997_-	leucine efflux protein	NA	NA	NA	NA
AXT66733.1\|3176086_3177001_-	lipid A biosynthesis palmitoleoyl acyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
AXT66734.1\|3177216_3177408_+	hypothetical protein	NA	NA	NA	NA
AXT66735.1\|3177662_3178706_-	L-asparaginase	NA	NA	NA	NA
AXT66736.1\|3179008_3180217_+	phosphodiesterase	NA	NA	NA	NA
AXT66737.1\|3180290_3182075_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.6e-17	38.5
AXT66738.1\|3182081_3182972_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXT66739.1\|3183092_3184601_+	3,4-dihydroxybenzoate decarboxylase	NA	NA	NA	NA
AXT66740.1\|3184911_3185598_-	diguanylate phosphodiesterase	NA	NA	NA	NA
AXT66741.1\|3185995_3186175_-	hypothetical protein	NA	NA	NA	NA
AXT66742.1\|3186214_3186847_-	DNA-binding protein	NA	NA	NA	NA
AXT66743.1\|3187413_3187611_+	hypothetical protein	NA	NA	NA	NA
AXT66744.1\|3187726_3188737_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
AXT66745.1\|3188733_3190140_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
AXT66746.1\|3190195_3191083_-	Mn-containing catalase	NA	NA	NA	NA
AXT66747.1\|3191099_3191606_-	ferritin-like domain-containing protein	NA	NA	NA	NA
AXT66748.1\|3191632_3192127_-	ferritin-like domain-containing protein	NA	NA	NA	NA
AXT66749.1\|3192217_3192403_-	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA
AXT66750.1\|3193024_3194218_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
AXT66751.1\|3194330_3194558_+	DUF1272 domain-containing protein	NA	NA	NA	NA
AXT66752.1\|3194578_3194764_-	hypothetical protein	NA	NA	NA	NA
3194854:3194868	attL	NA	NA	NA	NA
AXT66753.1\|3195007_3195331_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AXT66754.1\|3195323_3195716_+	amino acid-binding protein	NA	NA	NA	NA
AXT66755.1\|3195712_3196426_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AXT66756.1\|3196698_3196851_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
AXT66757.1\|3197005_3198502_-\|tail	phage tail protein	A0A0P0IDN1	Klebsiella_phage	6.4e-126	63.7
AXT66758.1\|3202774_3203743_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXT66759.1\|3212449_3213043_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	77.2
AXT66760.1\|3213069_3213492_-	hypothetical protein	J9Q806	Salmonella_phage	2.9e-28	49.3
AXT66761.1\|3213533_3214244_-	peptidase P60	Q6UAW4	Klebsiella_phage	3.8e-137	91.1
AXT66762.1\|3214245_3215001_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	6.1e-125	80.9
AXT66763.1\|3214997_3215336_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
AXT66764.1\|3215335_3218671_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.6
AXT66765.1\|3218670_3218883_-	hypothetical protein	Q6UAW9	Klebsiella_phage	3.7e-32	88.9
AXT66766.1\|3218903_3219269_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
AXT66767.1\|3219326_3219788_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
AXT66768.1\|3219819_3220221_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
AXT66769.1\|3220217_3220607_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
AXT66770.1\|3220587_3220926_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
AXT66771.1\|3220922_3221240_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	2.6e-45	89.8
AXT66772.1\|3221220_3221481_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
AXT66773.1\|3221539_3222826_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	1.5e-216	89.3
AXT66774.1\|3222903_3223824_-	serine peptidase	Q6UAX7	Klebsiella_phage	2.1e-148	87.9
AXT66775.1\|3223860_3225120_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.8e-223	90.2
AXT66776.1\|3225119_3225299_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
AXT66777.1\|3225292_3227014_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.1e-190	57.4
AXT66778.1\|3227013_3227448_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
AXT66779.1\|3227695_3228127_-	hypothetical protein	Q6UAS0	Klebsiella_phage	2.4e-41	61.3
AXT66780.1\|3228123_3228441_-	hypothetical protein	NA	NA	NA	NA
AXT66781.1\|3228392_3228755_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
AXT66782.1\|3229881_3230232_-	hypothetical protein	R9TPM9	Aeromonas_phage	2.5e-09	36.8
AXT66783.1\|3230228_3230726_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	8.7e-80	87.0
AXT66784.1\|3230725_3230941_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
AXT66785.1\|3232353_3232956_-	hypothetical protein	H9C175	Pectobacterium_phage	4.2e-76	67.5
AXT66786.1\|3232972_3234004_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-95	49.6
AXT66787.1\|3234003_3234207_-	hypothetical protein	NA	NA	NA	NA
AXT66788.1\|3234203_3234596_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
AXT66789.1\|3234636_3234927_-	hypothetical protein	H6WRY6	Salmonella_phage	6.1e-17	56.9
AXT66790.1\|3234938_3235172_-	DinI family protein	K7PM44	Enterobacteria_phage	1.3e-25	72.4
AXT66791.1\|3235797_3236775_+	thymidylate synthase	A0A1G5SB41	Enterococcus_phage	1.1e-22	31.5
AXT66792.1\|3236774_3237719_+	hypothetical protein	NA	NA	NA	NA
AXT66793.1\|3237721_3238804_-	ImmA/IrrE family metallo-endopeptidase	A0A075BTZ7	Microcystis_phage	2.1e-09	38.6
AXT66794.1\|3238800_3239127_-	killer suppression protein HigA	NA	NA	NA	NA
AXT66795.1\|3239272_3239539_+	hypothetical protein	A0A2C9CX56	Yersinia_phage	8.6e-26	70.7
AXT66796.1\|3241710_3242151_-	PerC family transcriptional regulator	NA	NA	NA	NA
AXT68772.1\|3242164_3242629_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.7e-61	68.9
AXT66797.1\|3242621_3243605_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	2.4e-44	55.8
AXT66798.1\|3243656_3244211_-	hypothetical protein	NA	NA	NA	NA
AXT66799.1\|3244213_3244429_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
AXT66800.1\|3244530_3244920_+	transcriptional regulator	A0A0M4R5D1	Salmonella_phage	6.7e-35	60.2
AXT66801.1\|3245762_3245957_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AXT66802.1\|3245999_3246344_+	transcriptional regulator	NA	NA	NA	NA
AXT66803.1\|3246485_3248624_+	exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	5.0e-100	43.0
AXT66804.1\|3248676_3248922_+	excisionase	NA	NA	NA	NA
AXT66805.1\|3248902_3250030_+\|integrase	integrase	O21925	Phage_21	1.8e-117	57.8
AXT66806.1\|3250252_3250819_-	hypothetical protein	NA	NA	NA	NA
AXT66807.1\|3250815_3252336_-	hypothetical protein	A0A2I7RNF1	Vibrio_phage	1.1e-05	21.5
AXT66808.1\|3252509_3253760_-	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	1.1e-19	92.6
AXT66809.1\|3254000_3254651_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3254100:3254114	attR	NA	NA	NA	NA
AXT66810.1\|3254667_3255126_+	NUDIX hydrolase	NA	NA	NA	NA
AXT68773.1\|3255182_3256289_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_9

3494707 : 3504171

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT67019.1\|3494707_3496429_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
AXT67020.1\|3496473_3497175_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AXT67021.1\|3497528_3497747_+	translation initiation factor IF-1	NA	NA	NA	NA
AXT67022.1\|3497867_3500147_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AXT67023.1\|3500177_3500495_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AXT67024.1\|3500820_3501042_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AXT67025.1\|3500996_3501179_-	hypothetical protein	NA	NA	NA	NA
AXT67026.1\|3501118_3503059_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.9e-37	40.5
AXT67027.1\|3503055_3504171_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP023417

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6400 : 140204

120

Stx2-converting_phage(13.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT68872.1\|6400_7058_+\|transposase	IS1 family transposase	A0A077SLN4	Escherichia_phage	2.4e-117	93.5
AXT68873.1\|7332_7932_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXT68874.1\|7942_8713_+	histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-23	37.1
AXT68875.1\|8749_9514_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXT68876.1\|9519_10209_+	amino acid ABC transporter permease	NA	NA	NA	NA
AXT68877.1\|10205_10898_+	amino acid ABC transporter permease	NA	NA	NA	NA
AXT68878.1\|10915_11806_+	arginase	NA	NA	NA	NA
AXT68879.1\|12699_13548_+	alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	3.4e-07	26.4
AXT68880.1\|13573_14542_-\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-179	96.0
AXT68881.1\|14985_15990_+\|transposase	IS110 family transposase IS4321	NA	NA	NA	NA
AXT68882.1\|16387_17467_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	7.3e-23	26.6
AXT68883.1\|17606_18392_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXT68884.1\|18634_19408_-	histidine ABC transporter ATP-binding protein HisP	G9BWD6	Planktothrix_phage	1.5e-22	35.2
AXT68885.1\|19417_20134_-	histidine ABC transporter permease HisM	NA	NA	NA	NA
AXT68886.1\|20130_20817_-	histidine ABC transporter permease HisQ	NA	NA	NA	NA
AXT69107.1\|20885_21872_-	succinylglutamate desuccinylase	NA	NA	NA	NA
AXT69108.1\|21871_23368_-	succinylglutamate-semialdehyde dehydrogenase	NA	NA	NA	NA
AXT68887.1\|23371_24409_-	arginine N-succinyltransferase	NA	NA	NA	NA
AXT68888.1\|24405_25644_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	3.8e-23	26.4
AXT68889.1\|26019_26937_-	amidinotransferase	NA	NA	NA	NA
AXT68890.1\|26959_27973_-	ornithine cyclodeaminase	A0A1V0SL93	Klosneuvirus	3.3e-94	52.6
AXT68891.1\|28097_28520_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AXT68892.1\|28638_29562_-\|transposase	IS5/IS1182 family transposase	Q9MCT5	Escherichia_phage	4.3e-173	98.0
AXT68893.1\|30302_32612_+	ATPase	NA	NA	NA	NA
AXT68894.1\|32615_33932_+	ATP-binding protein	NA	NA	NA	NA
AXT68895.1\|33928_36124_+	DEAD/DEAH box helicase	NA	NA	NA	NA
AXT68896.1\|36443_37604_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	6.0e-39	36.1
AXT68897.1\|37922_38153_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AXT68898.1\|38149_38566_+	PIN domain-containing protein	NA	NA	NA	NA
AXT68899.1\|40298_41372_+	hypothetical protein	NA	NA	NA	NA
AXT68900.1\|41368_43033_+	hypothetical protein	NA	NA	NA	NA
AXT69109.1\|44111_45035_+\|transposase	IS5/IS1182 family transposase	Q9MCT5	Escherichia_phage	3.9e-174	98.7
AXT68901.1\|45354_45783_-	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
AXT68902.1\|45932_47171_-\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	5.6e-11	23.4
AXT68903.1\|47467_48463_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	4.1e-20	28.9
AXT68904.1\|49307_50459_-	2-alkenal reductase	A0A1B1IT49	uncultured_Mediterranean_phage	1.7e-25	30.3
AXT68905.1\|50483_51449_-\|protease	Zn-dependent protease	NA	NA	NA	NA
AXT68906.1\|51426_51924_-	phosphate-starvation-inducible E family protein	NA	NA	NA	NA
AXT68907.1\|51926_53636_-	sodium:proton exchanger	NA	NA	NA	NA
AXT68908.1\|53639_54080_-	thiol reductase thioredoxin	A0A023NHA9	Dinoroseobacter_phage	5.8e-11	34.7
AXT68909.1\|54069_55215_-	hypothetical protein	NA	NA	NA	NA
AXT68910.1\|55263_55905_-	hypothetical protein	NA	NA	NA	NA
AXT68911.1\|55994_56882_-	hypothetical protein	NA	NA	NA	NA
AXT68912.1\|56984_57899_-	hypothetical protein	NA	NA	NA	NA
AXT68913.1\|57921_58380_-	heat-shock protein Hsp20	NA	NA	NA	NA
AXT69110.1\|58467_58608_-	hypothetical protein	NA	NA	NA	NA
AXT68914.1\|59525_62375_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	7.6e-128	40.9
AXT68915.1\|62480_63050_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
AXT69111.1\|63084_63366_-	DNA-binding protein	A0A1B1IUF9	uncultured_Mediterranean_phage	6.8e-05	38.2
AXT68916.1\|63870_64125_-	hypothetical protein	NA	NA	NA	NA
AXT68917.1\|65578_66655_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AXT68918.1\|68472_68643_-	galactoside O-acetyltransferase	NA	NA	NA	NA
AXT68919.1\|68699_69953_-	MFS transporter	NA	NA	NA	NA
AXT68920.1\|70004_73079_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.9
AXT68921.1\|73200_74283_-	lac repressor	C6ZCU4	Enterobacteria_phage	1.9e-188	97.8
AXT68922.1\|76048_77053_+\|transposase	IS110 family transposase IS4321	NA	NA	NA	NA
AXT68923.1\|79217_79796_+	resolvase	A0A0F7LA37	Escherichia_phage	1.1e-22	37.7
AXT68924.1\|79971_81177_+	chromate transporter	NA	NA	NA	NA
AXT68925.1\|81187_81493_+	PadR family transcriptional regulator	NA	NA	NA	NA
AXT68926.1\|81621_82320_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	4.5e-90	69.4
AXT68927.1\|82405_82726_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	6.5e-20	44.8
AXT69112.1\|82770_84060_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.3e-167	70.9
AXT68928.1\|84072_84498_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.9e-51	71.4
AXT68929.1\|84672_85677_+\|transposase	IS110 family transposase IS4321	NA	NA	NA	NA
AXT69113.1\|85995_86217_+	diguanylate phosphodiesterase	NA	NA	NA	NA
AXT68930.1\|86547_86841_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
AXT68931.1\|86939_87707_-	ferric citrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	1.3e-13	25.2
AXT68932.1\|87707_88664_-	iron-dicitrate transporter subunit FecD	NA	NA	NA	NA
AXT68933.1\|88660_89659_-	iron-dicitrate transporter permease subunit	NA	NA	NA	NA
AXT68934.1\|89655_90558_-	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
AXT68935.1\|90602_92927_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
AXT68936.1\|93013_93967_-	iron dicitrate transport regulator FecR	NA	NA	NA	NA
AXT68937.1\|93963_94485_-	RNA polymerase subunit sigma	NA	NA	NA	NA
AXT68938.1\|94648_95617_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	6.5e-180	96.3
AXT69114.1\|96071_96980_+	HNH endonuclease	NA	NA	NA	NA
AXT68939.1\|97366_97717_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	1.9e-20	54.3
AXT68940.1\|97860_98292_-	silver-binding protein SilE	NA	NA	NA	NA
AXT68941.1\|98542_100018_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	1.0e-27	30.1
AXT69115.1\|100010_100691_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-31	35.6
AXT68942.1\|100880_102266_+	hypothetical protein	NA	NA	NA	NA
AXT68943.1\|102294_102657_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
AXT68944.1\|102770_104063_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXT68945.1\|104073_107220_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	1.8e-61	22.3
AXT68946.1\|107306_107747_+	hypothetical protein	NA	NA	NA	NA
AXT68947.1\|107873_110321_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.6e-84	35.8
AXT68948.1\|110361_110559_+	DUF2933 domain-containing protein	NA	NA	NA	NA
AXT68949.1\|110592_111330_-	peptidase	A0A2H4JAF5	uncultured_Caudovirales_phage	1.3e-10	31.9
AXT68950.1\|111618_112068_-	copper resistance protein	NA	NA	NA	NA
AXT68951.1\|112301_114119_+	copper resistance protein A	NA	NA	NA	NA
AXT68952.1\|114118_115015_+	copper resistance protein B	NA	NA	NA	NA
AXT68953.1\|115054_115435_+	copper resistance protein CopC	NA	NA	NA	NA
AXT68954.1\|115439_116369_+	copper resistance protein D	NA	NA	NA	NA
AXT68955.1\|116423_117104_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.0e-30	34.8
AXT68956.1\|117100_118501_+	sensor histidine kinase	W8CYF6	Bacillus_phage	2.4e-18	26.6
AXT68957.1\|118716_119151_+	copper-binding protein	NA	NA	NA	NA
AXT68958.1\|119562_119649_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AXT68959.1\|119748_119952_+	hypothetical protein	Q76S41	Shigella_phage	1.0e-10	61.5
AXT68960.1\|119961_120930_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.3e-14	28.8
AXT68961.1\|121964_122933_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-179	96.0
AXT68962.1\|124088_124436_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	4.1e-60	96.5
AXT68963.1\|124432_124759_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	3.0e-44	79.5
AXT68964.1\|125526_125838_+	cytoplasmic protein	NA	NA	NA	NA
AXT68965.1\|125834_126254_+	transcriptional regulator	NA	NA	NA	NA
AXT69116.1\|127400_127595_+	hypothetical protein	E8ZD70	Streptococcus_phage	8.2e-10	59.6
AXT68966.1\|128307_128751_+	hypothetical protein	NA	NA	NA	NA
AXT68967.1\|128747_129218_+	RES domain-containing protein	NA	NA	NA	NA
AXT68968.1\|129328_129589_-	hypothetical protein	NA	NA	NA	NA
AXT68969.1\|130150_131332_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AXT68970.1\|131403_131562_+	Hok/Gef family protein	NA	NA	NA	NA
AXT68971.1\|133339_133717_-	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
AXT69117.1\|133898_134087_-	hypothetical protein	NA	NA	NA	NA
AXT68972.1\|134043_134340_+	hydrogenase expression/formation protein HypD	NA	NA	NA	NA
AXT68973.1\|134408_135476_+	hypothetical protein	NA	NA	NA	NA
AXT69118.1\|135631_135979_+	hypothetical protein	NA	NA	NA	NA
AXT69119.1\|136057_136291_+	hypothetical protein	NA	NA	NA	NA
AXT68974.1\|136931_137189_+	hypothetical protein	NA	NA	NA	NA
AXT68975.1\|137242_137920_-	nuclease-related domain protein	A0A2R2ZH57	Clostridioides_phage	2.5e-05	46.4
AXT69120.1\|137894_138272_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-58	92.1
AXT68976.1\|138268_138616_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	4.1e-60	96.5
AXT68977.1\|138665_140204_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.1e-273	91.8

DBSCAN-SWA_2

171286 : 215242

Shigella_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT69002.1\|171286_172507_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
AXT69003.1\|172721_174125_+\|transposase	ISNCY family transposase ISKpn21	NA	NA	NA	NA
AXT69004.1\|174153_174786_-	hypothetical protein	NA	NA	NA	NA
AXT69005.1\|174962_176495_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.1e-51	39.8
AXT69006.1\|176606_178010_+\|transposase	ISNCY family transposase ISKpn21	NA	NA	NA	NA
AXT69007.1\|178038_178671_-	hypothetical protein	NA	NA	NA	NA
AXT69008.1\|178866_179160_-	hypothetical protein	NA	NA	NA	NA
AXT69009.1\|179257_179656_-	DNA-binding protein H-NS-like protein	NA	NA	NA	NA
AXT69010.1\|180058_180877_-	DNA repair protein	NA	NA	NA	NA
AXT69011.1\|180986_181481_-	nuclease	A0A0R6PHV6	Moraxella_phage	4.2e-18	36.0
AXT69012.1\|181920_182889_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	3.9e-185	99.1
AXT69123.1\|185475_185589_+	hypothetical protein	U5P429	Shigella_phage	4.7e-10	81.1
AXT69013.1\|185680_187279_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	8.6e-20	31.9
AXT69014.1\|187811_188120_-	hypothetical protein	Q9ZXG3	Shigella_phage	2.7e-15	54.3
AXT69015.1\|188639_188867_-	hypothetical protein	NA	NA	NA	NA
AXT69016.1\|189551_190361_-	N-formylglutamate deformylase	NA	NA	NA	NA
AXT69017.1\|190353_191562_-	imidazolonepropionase	NA	NA	NA	NA
AXT69018.1\|191573_192965_-	cytosine permease	NA	NA	NA	NA
AXT69019.1\|193017_194694_-	urocanate hydratase	NA	NA	NA	NA
AXT69020.1\|197441_197999_-	hypothetical protein	NA	NA	NA	NA
AXT69021.1\|197995_198757_-	histidine utilization repressor	NA	NA	NA	NA
AXT69022.1\|198855_200223_+	formimidoylglutamate deiminase	NA	NA	NA	NA
AXT69023.1\|201597_201807_-	hypothetical protein	S5WIU1	Leptospira_phage	1.0e-13	54.8
AXT69024.1\|203557_204481_+\|transposase	IS5/IS1182 family transposase	Q9MCT5	Escherichia_phage	1.1e-176	99.3
AXT69025.1\|204526_206002_-	hypothetical protein	NA	NA	NA	NA
AXT69026.1\|206527_206734_-	hypothetical protein	NA	NA	NA	NA
AXT69027.1\|208049_209456_+	cytosine permease	NA	NA	NA	NA
AXT69028.1\|209492_211082_+	hypothetical protein	Q75ZG1	Hepacivirus	2.1e-34	25.0
AXT69029.1\|211078_212071_+	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA
AXT69030.1\|212675_212975_+	hypothetical protein	Q71TE9	Escherichia_phage	3.6e-28	68.2
AXT69031.1\|214219_215242_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

302686 : 309735

Stx2-converting_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT69098.1\|302686_303655_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.3e-14	28.8
AXT69099.1\|303664_303838_-	hypothetical protein	Q76S41	Shigella_phage	1.4e-21	94.5
AXT69100.1\|303923_305516_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.4e-176	61.6
AXT69101.1\|305546_305897_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
AXT69102.1\|305893_306334_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.4e-19	53.8
AXT69103.1\|306530_306713_+	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	9.1e-11	57.1
AXT69104.1\|308763_309735_-	plasmid-partitioning protein	I3WF22	Macacine_betaherpesvirus	2.4e-150	86.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. CP023420

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 45490

Escherichia_phage(45.0%)

transposase,integrase

attL 2741:2758|attR 9925:9942

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT69379.1\|0_720_+	RepB family plasmid replication initiator protein	I3WF20	Macacine_betaherpesvirus	8.6e-20	28.9
AXT69380.1\|1366_1846_+	hypothetical protein	NA	NA	NA	NA
AXT69381.1\|2267_2837_-	hypothetical protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
2741:2758	attL	NA	NA	NA	NA
AXT69382.1\|2976_3291_-\|transposase	transposase	NA	NA	NA	NA
AXT69383.1\|3229_4243_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AXT69384.1\|4389_4872_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	6.6e-16	28.9
AXT69385.1\|5092_5359_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
AXT69386.1\|5501_6266_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AXT69387.1\|6307_6520_+	resolvase	NA	NA	NA	NA
AXT69388.1\|6532_7741_+	restriction endonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
AXT69389.1\|7774_9208_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
AXT69390.1\|9589_9796_-	hypothetical protein	NA	NA	NA	NA
AXT69445.1\|9800_10289_-	restriction endonuclease	NA	NA	NA	NA
9925:9942	attR	NA	NA	NA	NA
AXT69391.1\|10497_10809_-	hypothetical protein	NA	NA	NA	NA
AXT69392.1\|10844_11159_-	IncN plasmid KikA protein	NA	NA	NA	NA
AXT69393.1\|11155_11500_-	hypothetical protein	NA	NA	NA	NA
AXT69446.1\|11515_11866_-	KorB	NA	NA	NA	NA
AXT69394.1\|11929_12664_+	traL protein	NA	NA	NA	NA
AXT69447.1\|12672_12954_+	transcriptional regulator	NA	NA	NA	NA
AXT69395.1\|12963_13257_+	conjugal transfer protein TraM	NA	NA	NA	NA
AXT69396.1\|13306_13624_+	type IV secretion system protein VirB3	NA	NA	NA	NA
AXT69397.1\|13623_16224_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AXT69398.1\|16241_16955_+	type IV secretion system protein	NA	NA	NA	NA
AXT69399.1\|16962_17190_+	entry exclusion protein	NA	NA	NA	NA
AXT69400.1\|17205_18246_+	conjugal transfer protein TraD	NA	NA	NA	NA
AXT69401.1\|18328_18475_+	conjugal transfer protein TraN	NA	NA	NA	NA
AXT69402.1\|18464_19163_+	type IV secretion system protein VirB8	NA	NA	NA	NA
AXT69403.1\|19236_20058_+	conjugal transfer protein TraO	NA	NA	NA	NA
AXT69404.1\|20057_21218_+	conjugal transfer protein TraF	NA	NA	NA	NA
AXT69405.1\|21259_22255_+	conjugal transfer protein TraG	NA	NA	NA	NA
AXT69406.1\|22254_22788_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.8e-21	33.9
AXT69407.1\|23759_24464_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXT69448.1\|24711_25089_+	N-acetyltransferase	NA	NA	NA	NA
AXT69408.1\|25289_25949_-	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	4.2e-130	99.1
AXT69409.1\|26155_26860_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXT69410.1\|27537_28182_+	quinolone resistance pentapeptide repeat protein QnrB19	NA	NA	NA	NA
AXT69411.1\|28190_28508_-	hypothetical protein	NA	NA	NA	NA
AXT69412.1\|28671_29934_-\|transposase	IS1380 family transposase ISEc9	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AXT69413.1\|31719_32481_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AXT69414.1\|32501_33362_-	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
AXT69415.1\|33325_33508_-	hypothetical protein	NA	NA	NA	NA
AXT69416.1\|33498_34203_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXT69417.1\|34560_35118_+	recombinase	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
AXT69418.1\|35300_36161_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AXT69419.1\|36302_37163_+	aminoglycoside N-acetyltransferase AAC(3)-IIa	NA	NA	NA	NA
AXT69420.1\|37175_37469_+	hypothetical protein	NA	NA	NA	NA
AXT69421.1\|38383_39913_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXT69422.1\|40058_40763_+\|transposase	IS6 family transposase IS1006	A0A077SL39	Escherichia_phage	1.9e-120	85.8
AXT69423.1\|40985_41558_+	aminoglycoside N-acetyltransferase AAC(6')-Ian	A0A0N9SKF6	Staphylococcus_phage	8.0e-37	40.1
AXT69424.1\|42214_43744_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXT69425.1\|44785_45490_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. CP023421

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 28046

Klebsiella_phage(82.35%)

terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT69452.1\|770_950_-	hypothetical protein	Q6UAX9	Klebsiella_phage	9.2e-16	78.9
AXT69453.1\|943_2653_-\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	0.0e+00	95.1
AXT69454.1\|2687_3122_-\|terminase	terminase	Q6UAY1	Klebsiella_phage	5.3e-73	95.1
AXT69503.1\|3338_3539_-	hypothetical protein	Q6UAR8	Klebsiella_phage	2.9e-10	89.4
AXT69455.1\|3624_4056_-	hypothetical protein	Q6UAS0	Klebsiella_phage	2.9e-39	59.9
AXT69456.1\|4052_4337_-	hypothetical protein	Q6UAS1	Klebsiella_phage	2.4e-05	37.5
AXT69457.1\|4333_4696_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	7.8e-62	92.5
AXT69458.1\|4679_5756_-	hypothetical protein	Q6UAS3	Klebsiella_phage	9.8e-36	37.4
AXT69459.1\|5925_6225_-	DUF4406 domain-containing protein	Q6UAS4	Klebsiella_phage	3.0e-51	96.0
AXT69460.1\|6478_6955_-	hypothetical protein	Q6UAS7	Klebsiella_phage	1.7e-61	79.7
AXT69461.1\|6971_7463_-	hypothetical protein	Q6UAS8	Klebsiella_phage	1.9e-82	90.8
AXT69462.1\|7459_7771_-	hypothetical protein	Q6UAS9	Klebsiella_phage	1.8e-43	88.1
AXT69463.1\|7829_8891_-	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	1.6e-171	93.2
AXT69464.1\|9161_9389_-	hypothetical protein	Q6UAT1	Klebsiella_phage	1.6e-28	84.0
AXT69504.1\|9400_9622_-	hypothetical protein	O64358	Escherichia_phage	3.0e-32	90.4
AXT69465.1\|9792_10101_+	type II toxin-antitoxin system RelE/ParE family toxin	Q6UAT3	Klebsiella_phage	3.9e-46	94.2
AXT69466.1\|10100_10388_+	XRE family transcriptional regulator	Q6UAT4	Klebsiella_phage	1.7e-43	96.8
AXT69467.1\|10477_10681_-	hypothetical protein	Q6UAT5	Klebsiella_phage	3.5e-19	76.6
AXT69468.1\|10784_11012_-	hypothetical protein	O64355	Escherichia_phage	2.8e-25	80.3
AXT69469.1\|11032_11359_-	hypothetical protein	Q6UAT7	Klebsiella_phage	3.9e-52	94.4
AXT69470.1\|11351_11597_-	hypothetical protein	G8C7U9	Escherichia_phage	5.1e-25	83.1
AXT69471.1\|12197_12806_-	3'-5' exonuclease	Q6UAU3	Klebsiella_phage	1.7e-98	88.5
AXT69472.1\|13015_13237_-	hypothetical protein	A0A2I6TCB2	Escherichia_phage	1.1e-29	75.3
AXT69473.1\|13217_13955_-	phage antitermination protein	Q6UAU4	Klebsiella_phage	1.4e-118	84.1
AXT69505.1\|13944_14154_-	hypothetical protein	Q6UAU5	Klebsiella_phage	7.7e-30	92.8
AXT69474.1\|14234_14843_+	helix-turn-helix domain-containing protein	Q6UAU6	Klebsiella_phage	4.8e-104	92.1
AXT69475.1\|15093_19098_+	origin of replication binding family protein	A0A2I6TD01	Escherichia_phage	0.0e+00	81.3
AXT69476.1\|19090_19387_+	hypothetical protein	NA	NA	NA	NA
AXT69477.1\|19383_19734_+	hypothetical protein	O64343	Escherichia_phage	8.6e-50	77.6
AXT69478.1\|20315_20483_+	hypothetical protein	NA	NA	NA	NA
AXT69479.1\|20534_20699_+	host cell division inhibitor Icd-like protein	Q6UAV3	Klebsiella_phage	2.8e-19	96.3
AXT69480.1\|20695_20926_+	hypothetical protein	NA	NA	NA	NA
AXT69481.1\|20922_21702_+	hypothetical protein	Q6UAV5	Klebsiella_phage	2.0e-118	82.4
AXT69482.1\|21756_23679_-	protelomerase	Q6UAV6	Klebsiella_phage	0.0e+00	94.8
AXT69483.1\|24386_25550_+	plasmid-partitioning protein SopA	Q6UAV7	Klebsiella_phage	2.1e-225	98.4
AXT69484.1\|25552_26518_+	chromosome partitioning protein ParB	Q6UAV8	Klebsiella_phage	1.5e-155	86.6
AXT69485.1\|26597_28046_-\|tail	phage tail protein	A0A0P0IDN1	Klebsiella_phage	7.9e-97	53.4

DBSCAN-SWA_2

41175 : 52571

Klebsiella_phage(87.5%)

head,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXT69486.1\|41175_41769_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	77.2
AXT69487.1\|41795_42218_-	hypothetical protein	A0A1B0VMH3	Pseudomonas_phage	1.1e-14	37.9
AXT69488.1\|42259_42970_-	peptidase P60	Q6UAW4	Klebsiella_phage	3.8e-137	91.1
AXT69489.1\|42971_43727_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	2.7e-125	80.9
AXT69490.1\|43723_44062_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.2e-58	90.2
AXT69491.1\|44061_47418_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.0
AXT69492.1\|47417_47630_-	hypothetical protein	Q6UAW9	Klebsiella_phage	3.7e-32	88.9
AXT69493.1\|47650_48016_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
AXT69494.1\|48073_48535_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
AXT69495.1\|48566_48968_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
AXT69496.1\|48964_49354_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
AXT69497.1\|49334_49673_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
AXT69498.1\|49669_49987_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	9.9e-45	88.8
AXT69499.1\|49967_50228_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
AXT69500.1\|50286_51573_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	1.5e-216	89.3
AXT69501.1\|51650_52571_-	serine peptidase	Q6UAX7	Klebsiella_phage	2.1e-148	87.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage