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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP031971 Parvimonas micra strain KCOM 1037 chromosome, complete genome 6 crisprs RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6 1 8 4 0

Results visualization

1. CP031971
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031971_1 47696-47797 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031971_2 138006-138122 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031971_4 181089-181193 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031971_5 902609-902719 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031971_6 953071-954676 TypeIII NA
24 spacers
cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031971_7 1207897-1208031 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP031971_4 4.1|181128|27|CP031971|CRISPRCasFinder 181128-181154 27 CP031971.1 1288427-1288453 1 0.963

1. spacer 4.1|181128|27|CP031971|CRISPRCasFinder matches to position: 1288427-1288453, mismatch: 1, identity: 0.963

cgaagtaacaaggttctcgggcaccca	CRISPR spacer
cgaagcaacaaggttctcgggcaccca	Protospacer
*****.*********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP031971_3 3.1|175362|30|CP031971|CRISPRCasFinder 175362-175391 30 AP014360 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S40-C32, *** SEQUENCING IN PROGRESS *** 4962-4991 7 0.767
CP031971_3 3.1|175362|30|CP031971|CRISPRCasFinder 175362-175391 30 MK250029 Prevotella phage Lak-C1, complete genome 30001-30030 7 0.767
CP031971_3 3.1|175362|30|CP031971|CRISPRCasFinder 175362-175391 30 MK250016 Prevotella phage Lak-A1, complete genome 54733-54762 7 0.767
CP031971_3 3.1|175362|30|CP031971|CRISPRCasFinder 175362-175391 30 MK250019 Prevotella phage Lak-A2, complete genome 519720-519749 7 0.767
CP031971_6 6.23|954548|35|CP031971|CRISPRCasFinder,CRT,PILER-CR 954548-954582 35 NZ_CP049158 Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence 1026918-1026952 7 0.8
CP031971_6 6.23|954548|35|CP031971|CRISPRCasFinder,CRT,PILER-CR 954548-954582 35 NZ_CP049318 Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence 1031598-1031632 7 0.8
CP031971_3 3.1|175362|30|CP031971|CRISPRCasFinder 175362-175391 30 NZ_CP033781 Staphylococcus epidermidis strain FDAARGOS_529 plasmid unnamed1, complete sequence 17567-17596 9 0.7
CP031971_6 6.11|953765|36|CP031971|CRISPRCasFinder,CRT 953765-953800 36 NZ_CP007649 Lactobacillus salivarius strain JCM1046 plasmid pLMP1046, complete sequence 44508-44543 9 0.75
CP031971_6 6.15|954025|37|CP031971|CRISPRCasFinder,CRT,PILER-CR 954025-954061 37 MN657060 Psychrobacter sp. strain ANT_P25 plasmid pA25P1, complete sequence 3704-3740 9 0.757
CP031971_6 6.19|954288|36|CP031971|CRISPRCasFinder,CRT,PILER-CR 954288-954323 36 NZ_CP040940 Cetia pacifica strain TB6 plasmid unnamed1, complete sequence 22286-22321 9 0.75
CP031971_6 6.3|953233|34|CP031971|CRISPRCasFinder,CRT,PILER-CR 953233-953266 34 MN694000 Marine virus AFVG_250M989, complete genome 12802-12835 10 0.706
CP031971_6 6.24|954613|34|CP031971|CRISPRCasFinder,CRT,PILER-CR 954613-954646 34 MK448844 Streptococcus phage Javan116, complete genome 6158-6191 10 0.706
CP031971_7 7.1|1207947|35|CP031971|CRISPRCasFinder 1207947-1207981 35 NZ_CP016739 Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3C, complete sequence 24117-24151 10 0.714
CP031971_7 7.1|1207947|35|CP031971|CRISPRCasFinder 1207947-1207981 35 NZ_CP028104 Fusobacterium varium ATCC 27725 plasmid pFvar_27725, complete sequence 11274-11308 10 0.714

1. spacer 3.1|175362|30|CP031971|CRISPRCasFinder matches to AP014360 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S40-C32, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agttgaatctgaaattgtagatgttccagc	CRISPR spacer
tatagtttgtgaaattgtagatgatccagc	Protospacer
 .* *  * ************** ******

2. spacer 3.1|175362|30|CP031971|CRISPRCasFinder matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 7, identity: 0.767

agttgaatctgaaattgtagatgttccagc	CRISPR spacer
aacaaattctgaaattgaagatattccagc	Protospacer
*.. .* ********** ****.*******

3. spacer 3.1|175362|30|CP031971|CRISPRCasFinder matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.767

agttgaatctgaaattgtagatgttccagc	CRISPR spacer
aacaaattctgaaattgaagatattccagc	Protospacer
*.. .* ********** ****.*******

4. spacer 3.1|175362|30|CP031971|CRISPRCasFinder matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.767

agttgaatctgaaattgtagatgttccagc	CRISPR spacer
aacaaattctgaaattgaagatattccagc	Protospacer
*.. .* ********** ****.*******

5. spacer 6.23|954548|35|CP031971|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 7, identity: 0.8

aaaatttattgtagaaaatcaggat-gaagatagaa	CRISPR spacer
aaaatttattgtataaattcaggatcgtttatagg-	Protospacer
************* *** ******* *   ****. 

6. spacer 6.23|954548|35|CP031971|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 7, identity: 0.8

aaaatttattgtagaaaatcaggat-gaagatagaa	CRISPR spacer
aaaatttattgtataaattcaggatcgtttatagg-	Protospacer
************* *** ******* *   ****. 

7. spacer 3.1|175362|30|CP031971|CRISPRCasFinder matches to NZ_CP033781 (Staphylococcus epidermidis strain FDAARGOS_529 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

agttgaatctgaaattgtagatgttccagc	CRISPR spacer
tgttgaatttgaaattgtaaatgtgttgaa	Protospacer
 *******.**********.**** .... 

8. spacer 6.11|953765|36|CP031971|CRISPRCasFinder,CRT matches to NZ_CP007649 (Lactobacillus salivarius strain JCM1046 plasmid pLMP1046, complete sequence) position: , mismatch: 9, identity: 0.75

-tttaagtgagtatgcattttatgtatttaaaataat	CRISPR spacer
acttgcat-agtaagcattttctgtatttaaaatatc	Protospacer
 .**. .* **** ******* ************* .

9. spacer 6.15|954025|37|CP031971|CRISPRCasFinder,CRT,PILER-CR matches to MN657060 (Psychrobacter sp. strain ANT_P25 plasmid pA25P1, complete sequence) position: , mismatch: 9, identity: 0.757

aaagcaaagaagatatagaaaacaatactttctttaa	CRISPR spacer
ctagtaaagaagatataaaaaacaatacttgcgattc	Protospacer
  **.************.************ *  *  

10. spacer 6.19|954288|36|CP031971|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040940 (Cetia pacifica strain TB6 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

tgaaaaaattgaagatttattttttg-------taatatcgta	CRISPR spacer
tgaaaaacttgaagatatattttttgatgaggttaa-------	Protospacer
******* ******** *********       ***       

11. spacer 6.3|953233|34|CP031971|CRISPRCasFinder,CRT,PILER-CR matches to MN694000 (Marine virus AFVG_250M989, complete genome) position: , mismatch: 10, identity: 0.706

aagatagcacagattgtgtttagtgaaaaaacag	CRISPR spacer
ggtcaaacgaagattgagtttagtgaaacaacag	Protospacer
..   *.*. ****** *********** *****

12. spacer 6.24|954613|34|CP031971|CRISPRCasFinder,CRT,PILER-CR matches to MK448844 (Streptococcus phage Javan116, complete genome) position: , mismatch: 10, identity: 0.706

ggaaagaactgtaaatggacatgttaatagaata	CRISPR spacer
aagtaggtatgtaaatggacacgttaattgaatt	Protospacer
... **.  ************.****** **** 

13. spacer 7.1|1207947|35|CP031971|CRISPRCasFinder matches to NZ_CP016739 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3C, complete sequence) position: , mismatch: 10, identity: 0.714

tcgcaactctttttgatttcttttatggttgttgc	CRISPR spacer
ctccaactcttttttatttctattatggaaaattc	Protospacer
.. *********** ****** ******  . * *

14. spacer 7.1|1207947|35|CP031971|CRISPRCasFinder matches to NZ_CP028104 (Fusobacterium varium ATCC 27725 plasmid pFvar_27725, complete sequence) position: , mismatch: 10, identity: 0.714

tcgcaactctttttgatttcttttatggttgttgc	CRISPR spacer
cctagaaacttttttatttcttttatggtagttat	Protospacer
.*  .*  ****** ************** ***..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 247429 : 268800 24 Streptococcus_phage(90.0%) integrase attL 242746:242762|attR 275206:275222
DBSCAN-SWA_2 360855 : 382137 17 Bacillus_phage(22.22%) tRNA,protease NA
DBSCAN-SWA_3 660451 : 675067 12 Cyanophage(22.22%) NA NA
DBSCAN-SWA_4 1601393 : 1634924 55 Streptococcus_phage(35.48%) capsid,holin,integrase,terminase,portal,tail attL 1581449:1581477|attR 1639624:1639652
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage