CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	0 crisprs	csa3,cas1	0	0	2	0
CP028347	Novosphingobium sp. THN1 chromosome, complete genome	0 crisprs	WYL,csa3,DEDDh,DinG	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

26083 : 99104

Bacillus_phage(23.08%)

transposase,integrase

attL 26413:26428|attR 35120:35135

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU20790.1\|26083_26918_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
26413:26428	attL	NA	NA	NA	NA
AXU20791.1\|27689_28070_+	hypothetical protein	NA	NA	NA	NA
AXU20792.1\|28486_28759_-	hypothetical protein	NA	NA	NA	NA
AXU20793.1\|29337_30570_+\|integrase	integrase	A0A221SAN4	Ralstonia_phage	6.8e-41	32.4
AXU20794.1\|30566_31112_+	hypothetical protein	A0A221SAN4	Ralstonia_phage	2.7e-13	36.7
AXU20795.1\|31606_31924_+	transcriptional regulator	NA	NA	NA	NA
AXU21560.1\|33208_33700_+	TetR family transcriptional regulator	NA	NA	NA	NA
AXU20796.1\|36476_38039_+	RNA-binding protein	A0A1J0GW83	Streptomyces_phage	2.5e-11	21.3
35120:35135	attR	NA	NA	NA	NA
AXU20797.1\|38824_40051_+	RNA-splicing ligase RtcB	A0A191ZBU8	Erwinia_phage	2.3e-142	61.3
AXU20798.1\|40201_40537_-	hypothetical protein	NA	NA	NA	NA
AXU21561.1\|41874_42243_+	single-stranded DNA-binding protein	A0A1W6DXL3	Salmonella_phage	1.1e-15	40.6
AXU20799.1\|42610_44350_-	hypothetical protein	A0A2H4J162	uncultured_Caudovirales_phage	2.9e-13	23.7
AXU20800.1\|45136_45355_-	hypothetical protein	NA	NA	NA	NA
AXU21562.1\|45464_46043_-	hypothetical protein	NA	NA	NA	NA
AXU20801.1\|46110_46734_-	hypothetical protein	NA	NA	NA	NA
AXU20802.1\|46742_48746_-	hypothetical protein	NA	NA	NA	NA
AXU20803.1\|49097_49571_+	hypothetical protein	NA	NA	NA	NA
AXU20804.1\|49803_50214_-	hypothetical protein	NA	NA	NA	NA
AXU20805.1\|50180_52760_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	1.2e-18	34.1
AXU21563.1\|54078_55074_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.6e-14	34.9
AXU20806.1\|56102_56459_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
AXU20807.1\|57670_58609_+	nucleotidyltransferase	NA	NA	NA	NA
AXU20808.1\|58697_59600_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	5.8e-66	47.7
AXU20809.1\|61140_61635_+	hypothetical protein	NA	NA	NA	NA
AXU20810.1\|61712_62252_+	hypothetical protein	NA	NA	NA	NA
AXU20811.1\|62353_63244_+	hypothetical protein	NA	NA	NA	NA
AXU20812.1\|64545_67161_+	hypothetical protein	NA	NA	NA	NA
AXU20813.1\|67448_67736_+	hypothetical protein	NA	NA	NA	NA
AXU20814.1\|67737_68706_+	hypothetical protein	NA	NA	NA	NA
AXU20815.1\|68940_70377_+	sugar transferase	NA	NA	NA	NA
AXU20816.1\|70529_70925_-	hypothetical protein	H7BW61	unidentified_phage	2.6e-10	36.6
AXU20817.1\|71358_71820_+	hypothetical protein	NA	NA	NA	NA
AXU20818.1\|72239_73064_-	AAA family ATPase	U5N3V8	Enterobacteria_phage	3.0e-45	42.2
AXU21564.1\|73060_74428_-\|transposase	IS66 family transposase	NA	NA	NA	NA
AXU20819.1\|74439_74772_-	hypothetical protein	NA	NA	NA	NA
AXU20820.1\|76166_77522_+\|transposase	IS66 family transposase	NA	NA	NA	NA
AXU20821.1\|78265_79630_-	hypothetical protein	NA	NA	NA	NA
AXU20822.1\|79645_81295_-	GMC oxidoreductase	NA	NA	NA	NA
AXU20823.1\|81528_82092_+	hypothetical protein	NA	NA	NA	NA
AXU20824.1\|82630_83974_+	hypothetical protein	NA	NA	NA	NA
AXU20825.1\|84182_85196_+	hypothetical protein	NA	NA	NA	NA
AXU20826.1\|85251_86133_-	hypothetical protein	NA	NA	NA	NA
AXU20827.1\|86158_86644_-	hypothetical protein	NA	NA	NA	NA
AXU20828.1\|86640_87096_-	oligosaccharide biosynthesis protein Alg14	NA	NA	NA	NA
AXU20829.1\|87098_88196_-	oxidoreductase	NA	NA	NA	NA
AXU20830.1\|90750_92943_-	hypothetical protein	A0A2H4JA46	uncultured_Caudovirales_phage	5.0e-18	29.6
AXU20831.1\|93079_93796_+	hypothetical protein	NA	NA	NA	NA
AXU20832.1\|93882_94074_-	hypothetical protein	NA	NA	NA	NA
AXU21565.1\|96393_97496_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-10	27.0
AXU21566.1\|98084_99104_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

183112 : 247733

Shigella_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU20892.1\|183112_184260_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.1e-64	47.1
AXU20893.1\|184276_187183_+	hypothetical protein	NA	NA	NA	NA
AXU20894.1\|187110_188319_+	hypothetical protein	NA	NA	NA	NA
AXU20895.1\|188210_188717_+	hypothetical protein	NA	NA	NA	NA
AXU20896.1\|190418_191813_-	transporter	NA	NA	NA	NA
AXU20897.1\|194897_195953_-	hypothetical protein	NA	NA	NA	NA
AXU20898.1\|196033_196633_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AXU20899.1\|196726_196966_-	hypothetical protein	NA	NA	NA	NA
AXU20900.1\|197182_198190_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXU20901.1\|199533_200007_+	carbon monoxide dehydrogenase	A0A0P0IVM8	Acinetobacter_phage	8.7e-13	35.9
AXU20902.1\|200003_202376_+	carbon monoxide dehydrogenase	NA	NA	NA	NA
AXU20903.1\|203189_203771_+	carbon monoxide dehydrogenase	NA	NA	NA	NA
AXU20904.1\|203816_205064_-	MFS transporter	NA	NA	NA	NA
AXU20905.1\|205045_205699_-	hypothetical protein	NA	NA	NA	NA
AXU20906.1\|205735_206848_-	12-oxophytodienoate reductase	NA	NA	NA	NA
AXU20907.1\|207093_208446_+	amidohydrolase family protein	NA	NA	NA	NA
AXU20908.1\|208195_209587_+	cytochrome P450	NA	NA	NA	NA
AXU20909.1\|209586_210669_+	cytochrome P450	NA	NA	NA	NA
AXU20910.1\|210793_211546_+	hypothetical protein	Q06VL0	Trichoplusia_ni_ascovirus	8.7e-07	27.2
AXU20911.1\|211538_212291_+	hypothetical protein	NA	NA	NA	NA
AXU20912.1\|212346_213099_+	short-chain dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	8.2e-13	30.6
AXU20913.1\|213118_214108_-	amidohydrolase	NA	NA	NA	NA
AXU20914.1\|214109_214877_-	hypothetical protein	NA	NA	NA	NA
AXU20915.1\|214880_215333_-	limonene-1,2-epoxide hydrolase	NA	NA	NA	NA
AXU20916.1\|215416_215803_+	hypothetical protein	NA	NA	NA	NA
AXU20917.1\|215862_216195_+	hypothetical protein	NA	NA	NA	NA
AXU20918.1\|216355_216943_+	hypothetical protein	NA	NA	NA	NA
AXU20919.1\|216899_218183_-	branched-chain alpha-keto acid dehydrogenase subunit E2	NA	NA	NA	NA
AXU20920.1\|219214_220447_-	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha	NA	NA	NA	NA
AXU20921.1\|220650_221106_+	AsnC family transcriptional regulator	NA	NA	NA	NA
AXU20922.1\|221250_223527_+	hypothetical protein	NA	NA	NA	NA
AXU20923.1\|223844_226277_+	hypothetical protein	NA	NA	NA	NA
AXU20924.1\|226276_228337_+	dehydrogenase	A0A0M4JT37	Mollivirus	6.5e-44	29.7
AXU20925.1\|228415_229168_-	short chain dehydrogenase	A0A0M4JSW6	Mollivirus	4.8e-13	29.4
AXU20926.1\|229313_229931_+	hypothetical protein	NA	NA	NA	NA
AXU20927.1\|233942_235090_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.1e-64	47.1
AXU20928.1\|235404_236241_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
AXU20929.1\|236205_236388_+	hypothetical protein	NA	NA	NA	NA
AXU20930.1\|236861_237314_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AXU20931.1\|237310_237667_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AXU20932.1\|237698_239219_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	2.2e-97	39.2
AXU20933.1\|239300_240542_-	hypothetical protein	NA	NA	NA	NA
AXU20934.1\|240642_241638_-	membrane dipeptidase	NA	NA	NA	NA
AXU20935.1\|242020_242383_+	hypothetical protein	NA	NA	NA	NA
AXU20936.1\|243251_243935_+	hypothetical protein	NA	NA	NA	NA
AXU20937.1\|243958_244525_+	hypothetical protein	NA	NA	NA	NA
AXU20938.1\|244558_246286_+	hypothetical protein	NA	NA	NA	NA
AXU20939.1\|246416_246620_+	hypothetical protein	NA	NA	NA	NA
AXU20940.1\|246667_247733_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.1e-34	37.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028347

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2599648 : 2626303

Aeromonas_phage(26.32%)

terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU20691.1\|2599648_2600230_-	glycoside hydrolase	A0A2H4JDB4	uncultured_Caudovirales_phage	8.7e-39	46.7
AXU19701.1\|2600259_2600649_-	hypothetical protein	NA	NA	NA	NA
AXU19702.1\|2600650_2601328_-	hypothetical protein	Q6UIZ8	Burkholderia_virus	8.1e-20	44.9
AXU20692.1\|2601327_2601909_-	DUF2612 domain-containing protein	K4HYS2	Acinetobacter_phage	6.5e-26	38.1
AXU19703.1\|2601956_2603165_-	hypothetical protein	H9C0X9	Aeromonas_phage	1.3e-73	42.5
AXU19704.1\|2603161_2603500_-	hypothetical protein	A0A2R3UAP1	Myoviridae_environmental_samples	7.9e-16	42.7
AXU19705.1\|2604178_2605048_-	hypothetical protein	NA	NA	NA	NA
AXU19706.1\|2605044_2605335_-	hypothetical protein	NA	NA	NA	NA
AXU19707.1\|2605331_2605946_-	hypothetical protein	E2GM21	Acinetobacter_phage	1.7e-16	31.6
AXU19708.1\|2605945_2606362_-	hypothetical protein	NA	NA	NA	NA
AXU19709.1\|2606334_2607384_-	hypothetical protein	NA	NA	NA	NA
AXU19710.1\|2607416_2607551_-	transcription elongation factor GreA	NA	NA	NA	NA
AXU19711.1\|2608067_2608511_-	hypothetical protein	H9C0W6	Aeromonas_phage	2.7e-24	39.2
AXU19712.1\|2608523_2610014_-	hypothetical protein	A0A077KGV4	Edwardsiella_phage	3.1e-72	38.1
AXU19713.1\|2610007_2610565_-	hypothetical protein	A6N3B1	Burkholderia_virus	3.8e-07	35.1
AXU19714.1\|2610531_2610939_-	hypothetical protein	NA	NA	NA	NA
AXU19715.1\|2611141_2611588_-	hypothetical protein	A0A077KC03	Edwardsiella_phage	5.2e-15	42.7
AXU19716.1\|2611610_2612093_-	DUF4054 domain-containing protein	H9C0W0	Aeromonas_phage	2.6e-20	53.5
AXU19717.1\|2612097_2612496_-	hypothetical protein	NA	NA	NA	NA
AXU19718.1\|2612523_2613627_-	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	1.2e-73	44.3
AXU19719.1\|2613633_2614323_-	hypothetical protein	NA	NA	NA	NA
AXU19720.1\|2614327_2615596_-	hypothetical protein	A0A219YCD3	Aeromonas_phage	6.8e-52	34.7
AXU19721.1\|2615750_2616728_-	hypothetical protein	NA	NA	NA	NA
AXU19722.1\|2616739_2619130_-	hypothetical protein	Q4ZC48	Staphylococcus_virus	5.1e-08	22.7
AXU20693.1\|2619172_2619877_-\|head	phage head morphogenesis protein	A0A077KGU5	Edwardsiella_phage	2.1e-39	47.1
AXU19723.1\|2619951_2621478_-	hypothetical protein	A0A2R3UAL5	Myoviridae_environmental_samples	3.1e-104	44.4
AXU19724.1\|2621544_2621727_+	hypothetical protein	NA	NA	NA	NA
AXU19725.1\|2621723_2623190_-\|terminase	PBSX family phage terminase large subunit	A0A173H0R0	Pseudoalteromonas_phage	4.5e-132	50.3
AXU19726.1\|2623186_2623711_-\|terminase	terminase small subunit	A0A2I7RB14	Vibrio_phage	2.5e-32	50.7
AXU19727.1\|2623707_2623959_-	hypothetical protein	NA	NA	NA	NA
AXU19728.1\|2623961_2624555_-	hypothetical protein	NA	NA	NA	NA
AXU19729.1\|2624539_2624791_-	hypothetical protein	NA	NA	NA	NA
AXU19730.1\|2625100_2626303_-	hypothetical protein	A0A2D1GN57	Marinobacter_phage	4.4e-53	33.8

DBSCAN-SWA_2

2634936 : 2640685

Sinorhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU19743.1\|2634936_2636079_+	hypothetical protein	A0A076G8D7	Sinorhizobium_phage	7.5e-18	36.4
AXU19744.1\|2636081_2636846_+	YqaJ-like viral recombinase	A0A2L0HJW4	Mycobacterium_phage	7.2e-49	40.9
AXU19745.1\|2636842_2637538_+	hypothetical protein	A0A1P8VVD8	Erythrobacter_phage	3.5e-58	48.7
AXU19746.1\|2637552_2638194_+	hypothetical protein	G9FH01	Rhodococcus_phage	8.7e-32	41.3
AXU19747.1\|2638195_2638405_+	hypothetical protein	NA	NA	NA	NA
AXU19748.1\|2638555_2638894_+	hypothetical protein	NA	NA	NA	NA
AXU19749.1\|2638905_2639823_+	hypothetical protein	A0A0A8IL76	Aurantimonas_phage	8.1e-39	36.7
AXU19750.1\|2640209_2640446_+	hypothetical protein	NA	NA	NA	NA
AXU19751.1\|2640442_2640685_+	hypothetical protein	A0A1V0E8D1	Vibrio_phage	2.1e-07	57.9

DBSCAN-SWA_3

3472060 : 3480068

Burkholderia_virus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU20372.1\|3472060_3473296_-	hypothetical protein	C5IHJ8	Burkholderia_virus	1.6e-34	37.4
AXU20373.1\|3473299_3473500_-	hypothetical protein	NA	NA	NA	NA
AXU20374.1\|3473554_3474400_-	hypothetical protein	NA	NA	NA	NA
AXU20375.1\|3474432_3474837_-	hypothetical protein	NA	NA	NA	NA
AXU20376.1\|3475231_3475594_-	hypothetical protein	NA	NA	NA	NA
AXU20377.1\|3475596_3476085_-	hypothetical protein	NA	NA	NA	NA
AXU20378.1\|3476165_3476780_-	hypothetical protein	A0A139ZPI6	Marinitoga_camini_virus	4.2e-07	29.7
AXU20379.1\|3476871_3477126_+	hypothetical protein	NA	NA	NA	NA
AXU20769.1\|3477204_3477423_+	hypothetical protein	A0A1X9HVT2	Ruegeria_phage	7.3e-07	53.3
AXU20380.1\|3477392_3477527_+	hypothetical protein	A0A2I7R7I1	Vibrio_phage	7.1e-05	68.8
AXU20381.1\|3477625_3478990_+	hypothetical protein	R9TSA8	Rhizobium_phage	7.3e-44	35.8
AXU20382.1\|3478992_3479454_+	hypothetical protein	A0A240F4S6	Ochrobactrum_phage	2.2e-24	49.6
AXU20770.1\|3479477_3480068_+	methyltransferase	A0A076GD02	Sinorhizobium_phage	2.0e-62	60.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028348

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028347

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection