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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP012323 Clostridioides difficile strain DSM 28669 chromosome, complete genome 11 crisprs cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,csa3,cas14k,cas5,cas7,cas6 3 32 14 0

Results visualization

1. CP012323
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_1 577919-578043 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_2 1300610-1301165 Orphan I-A
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_3 1510889-1511378 Orphan I-A
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_4 1620567-1621320 Orphan I-A
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_5 1710472-1710834 Orphan I-A
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_6 1711436-1712058 Orphan I-A
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_7 1713646-1714002 Orphan I-A
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_8 1844119-1844677 Orphan I-A
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_9 2674469-2674629 Unclear NA
2 spacers
cas3,cas5,cas7,cas6,c2c9_V-U4

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_10 2764303-2764727 Orphan I-A
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP012323_17 3663744-3663853 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP012323_10 10.6|2764662|37|CP012323|CRISPRCasFinder,CRT,PILER-CR 2764662-2764698 37 CP012323.1 92000-92036 0 1.0
CP012323_16 16.8|3565385|18|CP012323|CRT 3565385-3565402 18 CP012323.1 398259-398276 1 0.944
CP012323_16 16.6|3565286|27|CP012323|CRT 3565286-3565312 27 CP012323.1 3750593-3750619 2 0.926
CP012323_16 16.6|3565286|27|CP012323|CRT 3565286-3565312 27 CP012323.1 3750665-3750691 2 0.926

1. spacer 10.6|2764662|37|CP012323|CRISPRCasFinder,CRT,PILER-CR matches to position: 92000-92036, mismatch: 0, identity: 1.0

cagctcctacaaagtcagcaccagcttgttcagcttc	CRISPR spacer
cagctcctacaaagtcagcaccagcttgttcagcttc	Protospacer
*************************************

2. spacer 16.8|3565385|18|CP012323|CRT matches to position: 398259-398276, mismatch: 1, identity: 0.944

cgttgctcccgttgctcc	CRISPR spacer
cgttgctcccgttggtcc	Protospacer
************** ***

3. spacer 16.6|3565286|27|CP012323|CRT matches to position: 3750593-3750619, mismatch: 2, identity: 0.926

agtcgctcctgtatttcctgttggacc	CRISPR spacer
agttcctcctgtatttcctgttggacc	Protospacer
***. **********************

4. spacer 16.6|3565286|27|CP012323|CRT matches to position: 3750665-3750691, mismatch: 2, identity: 0.926

agtcgctcctgtatttcctgttggacc	CRISPR spacer
agttcctcctgtatttcctgttggacc	Protospacer
***. **********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP012323_2 2.4|1300836|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1300836-1300872 37 NC_011398 Clostridium phage phiCD27, complete genome 18184-18220 0 1.0
CP012323_3 3.4|1511117|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1511117-1511153 37 GU949551 Clostridium phage phiCD6356, complete genome 29922-29958 0 1.0
CP012323_4 4.5|1620862|36|CP012323|CRISPRCasFinder,CRT 1620862-1620897 36 NC_011398 Clostridium phage phiCD27, complete genome 22207-22242 0 1.0
CP012323_4 4.6|1620927|37|CP012323|CRISPRCasFinder,CRT 1620927-1620963 37 HG531805 Clostridium phage CDMH1 complete genome 45157-45193 0 1.0
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 LN681542 Clostridium phage phiMMP03, complete genome 50113-50150 0 1.0
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 NC_009231 Clostridium phage phiC2, complete genome 53651-53688 0 1.0
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 LN681541 Clostridium phage phiMMP01, complete genome 42313-42350 0 1.0
CP012323_5 5.2|1710568|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710568-1710604 37 MF547662 Clostridioides phage LIBA6276, complete genome 75816-75852 0 1.0
CP012323_5 5.2|1710568|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710568-1710604 37 MF547663 Clostridioides phage LIBA2945, complete genome 74539-74575 0 1.0
CP012323_5 5.3|1710634|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710634-1710670 37 MF547662 Clostridioides phage LIBA6276, complete genome 85584-85620 0 1.0
CP012323_5 5.3|1710634|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710634-1710670 37 MF547663 Clostridioides phage LIBA2945, complete genome 84307-84343 0 1.0
CP012323_6 6.2|1711531|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711531-1711567 37 NC_028996 Clostridium phage phiCDHM19, complete genome 38312-38348 0 1.0
CP012323_6 6.2|1711531|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711531-1711567 37 LN681541 Clostridium phage phiMMP01, complete genome 33821-33857 0 1.0
CP012323_6 6.4|1711663|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711663-1711699 37 LN881738 Escherichia phage slur17, complete genome 19522-19558 0 1.0
CP012323_6 6.4|1711663|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711663-1711699 37 KU057941 Clostridium phage CDSH1, complete genome 879-915 0 1.0
CP012323_6 6.4|1711663|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711663-1711699 37 NC_028905 Clostridium phage phiCD111, complete genome 907-943 0 1.0
CP012323_8 8.4|1844347|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844347-1844383 37 MF547662 Clostridioides phage LIBA6276, complete genome 119456-119492 0 1.0
CP012323_8 8.5|1844413|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844413-1844449 37 HG531805 Clostridium phage CDMH1 complete genome 32037-32073 0 1.0
CP012323_8 8.7|1844545|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844545-1844581 37 JX145342 Clostridium phage phiMMP04, complete genome 9306-9342 0 1.0
CP012323_10 10.4|2764530|38|CP012323|CRISPRCasFinder,CRT,PILER-CR 2764530-2764567 38 LN681541 Clostridium phage phiMMP01, complete genome 26984-27021 0 1.0
CP012323_10 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR 2764597-2764632 36 NC_048642 Clostridium phage CDKM9, complete genome 18001-18036 0 1.0
CP012323_2 2.1|1300639|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1300639-1300675 37 KX905163 Clostridioides phage phiSemix9P1, complete genome 4597-4633 1 0.973
CP012323_2 2.4|1300836|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1300836-1300872 37 NC_048642 Clostridium phage CDKM9, complete genome 18101-18137 1 0.973
CP012323_4 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT 1621189-1621224 36 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 20150-20185 1 0.972
CP012323_4 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT 1621189-1621224 36 NC_007917 Clostridium phage phi CD119, complete genome 20150-20185 1 0.972
CP012323_4 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT 1621189-1621224 36 NC_028996 Clostridium phage phiCDHM19, complete genome 20404-20439 1 0.972
CP012323_4 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT 1621189-1621224 36 NC_028838 Clostridium phage phiCD506, complete genome 13735-13770 1 0.972
CP012323_4 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT 1621189-1621224 36 LN681538 Clostridium phage phiCD481-1, complete genome 13762-13797 1 0.972
CP012323_5 5.3|1710634|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710634-1710670 37 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 124235-124271 1 0.973
CP012323_6 6.3|1711597|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711597-1711633 37 NZ_MG019959 Clostridioides difficile isolate ERR017368_NODE12 plasmid pCD-WTSI1, complete sequence 383-419 1 0.973
CP012323_6 6.3|1711597|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711597-1711633 37 NZ_MG019961 Clostridioides difficile isolate ERR125910_NODE5 plasmid pCD-WTSI3, complete sequence 387-423 1 0.973
CP012323_6 6.3|1711597|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711597-1711633 37 NZ_MG019962 Clostridioides difficile isolate ERR125911_NODE11 plasmid pCD-WTSI4, complete sequence 383-419 1 0.973
CP012323_6 6.3|1711597|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711597-1711633 37 NZ_MG019960 Clostridioides difficile isolate ERR022513_NODE32 plasmid pCD-WTSI2, complete sequence 383-419 1 0.973
CP012323_6 6.4|1711663|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711663-1711699 37 HM568888 Clostridium phage phiCD38-2, complete genome 907-943 1 0.973
CP012323_8 8.2|1844215|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844215-1844251 37 NZ_CP020426 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence 2845-2881 1 0.973
CP012323_8 8.2|1844215|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844215-1844251 37 CP011970 Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence 119119-119155 1 0.973
CP012323_8 8.2|1844215|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844215-1844251 37 LN681537 Clostridium phage phiCD211, complete genome 127981-128017 1 0.973
CP012323_8 8.3|1844281|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844281-1844317 37 LN681539 Clostridium phage phiCD505, complete genome 44829-44865 1 0.973
CP012323_8 8.3|1844281|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844281-1844317 37 LN681542 Clostridium phage phiMMP03, complete genome 46622-46658 1 0.973
CP012323_8 8.3|1844281|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844281-1844317 37 NC_009231 Clostridium phage phiC2, complete genome 50160-50196 1 0.973
CP012323_8 8.3|1844281|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844281-1844317 37 NC_011398 Clostridium phage phiCD27, complete genome 44126-44162 1 0.973
CP012323_10 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR 2764597-2764632 36 LN681539 Clostridium phage phiCD505, complete genome 18063-18098 1 0.972
CP012323_10 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR 2764597-2764632 36 JX145341 Clostridium phage phiMMP02, complete genome 17969-18004 1 0.972
CP012323_4 4.3|1620728|38|CP012323|CRISPRCasFinder,CRT 1620728-1620765 38 NC_048665 Clostridium phage phiCDHM14, complete genome 23559-23596 2 0.947
CP012323_4 4.3|1620728|38|CP012323|CRISPRCasFinder,CRT 1620728-1620765 38 HG796225 Clostridium phage phiCDHM13 complete genome 23060-23097 2 0.947
CP012323_4 4.3|1620728|38|CP012323|CRISPRCasFinder,CRT 1620728-1620765 38 LN681538 Clostridium phage phiCD481-1, complete genome 22799-22836 2 0.947
CP012323_4 4.3|1620728|38|CP012323|CRISPRCasFinder,CRT 1620728-1620765 38 HG798901 Clostridium phage phiCDHM11 complete genome 23059-23096 2 0.947
CP012323_4 4.7|1620993|37|CP012323|CRISPRCasFinder,CRT 1620993-1621029 37 GU949551 Clostridium phage phiCD6356, complete genome 27126-27162 2 0.946
CP012323_4 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT 1621189-1621224 36 NC_048665 Clostridium phage phiCDHM14, complete genome 13309-13344 2 0.944
CP012323_4 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT 1621189-1621224 36 MK473382 Clostridium phage JD032, complete genome 21368-21403 2 0.944
CP012323_4 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT 1621189-1621224 36 HG796225 Clostridium phage phiCDHM13 complete genome 13277-13312 2 0.944
CP012323_4 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT 1621189-1621224 36 HG798901 Clostridium phage phiCDHM11 complete genome 13276-13311 2 0.944
CP012323_4 4.11|1621254|38|CP012323|CRISPRCasFinder,CRT 1621254-1621291 38 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 94861-94898 2 0.947
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 49569-49606 2 0.947
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 NC_007917 Clostridium phage phi CD119, complete genome 49569-49606 2 0.947
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 LN681539 Clostridium phage phiCD505, complete genome 48376-48413 2 0.947
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 NC_028996 Clostridium phage phiCDHM19, complete genome 50774-50811 2 0.947
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 HG531805 Clostridium phage CDMH1 complete genome 51098-51135 2 0.947
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 JX145341 Clostridium phage phiMMP02, complete genome 47455-47492 2 0.947
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 NC_011398 Clostridium phage phiCD27, complete genome 49981-50018 2 0.947
CP012323_5 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710501-1710538 38 NC_048642 Clostridium phage CDKM9, complete genome 48820-48857 2 0.947
CP012323_10 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR 2764597-2764632 36 KX228400 Clostridium phage CDKM15, complete genome 21206-21241 2 0.944
CP012323_16 16.5|3565232|27|CP012323|CRT 3565232-3565258 27 NZ_CP014284 Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence 179101-179127 2 0.926
CP012323_16 16.5|3565232|27|CP012323|CRT 3565232-3565258 27 NZ_CP032609 Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence 271002-271028 2 0.926
CP012323_2 2.4|1300836|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1300836-1300872 37 JX145341 Clostridium phage phiMMP02, complete genome 18069-18105 3 0.919
CP012323_5 5.4|1710700|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710700-1710737 38 KU057941 Clostridium phage CDSH1, complete genome 7234-7271 3 0.921
CP012323_5 5.4|1710700|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710700-1710737 38 LN881738 Escherichia phage slur17, complete genome 13166-13203 3 0.921
CP012323_5 5.4|1710700|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1710700-1710737 38 NC_028905 Clostridium phage phiCD111, complete genome 7263-7300 3 0.921
CP012323_8 8.8|1844611|38|CP012323|PILER-CR,CRISPRCasFinder,CRT 1844611-1844648 38 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 26432-26469 3 0.921
CP012323_6 6.7|1711861|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711861-1711897 37 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 6235-6271 4 0.892
CP012323_6 6.7|1711861|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711861-1711897 37 NC_007917 Clostridium phage phi CD119, complete genome 6235-6271 4 0.892
CP012323_6 6.7|1711861|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1711861-1711897 37 NC_028996 Clostridium phage phiCDHM19, complete genome 6483-6519 4 0.892
CP012323_16 16.5|3565232|27|CP012323|CRT 3565232-3565258 27 CP011076 Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence 251926-251952 5 0.815
CP012323_16 16.5|3565232|27|CP012323|CRT 3565232-3565258 27 CP011076 Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence 251953-251979 5 0.815
CP012323_16 16.6|3565286|27|CP012323|CRT 3565286-3565312 27 MN694018 Marine virus AFVG_250M586, complete genome 31615-31641 5 0.815
CP012323_16 16.6|3565286|27|CP012323|CRT 3565286-3565312 27 MN694665 Marine virus AFVG_250M495, complete genome 19246-19272 5 0.815
CP012323_3 3.1|1510918|37|CP012323|PILER-CR,CRISPRCasFinder,CRT 1510918-1510954 37 MK448896 Streptococcus phage Javan278, complete genome 401-437 6 0.838
CP012323_16 16.5|3565232|27|CP012323|CRT 3565232-3565258 27 MN694581 Marine virus AFVG_250M102, complete genome 9343-9369 6 0.778
CP012323_16 16.5|3565232|27|CP012323|CRT 3565232-3565258 27 MN694664 Marine virus AFVG_250M101, complete genome 9438-9464 7 0.741
CP012323_16 16.5|3565232|27|CP012323|CRT 3565232-3565258 27 MN694569 Marine virus AFVG_250M103, complete genome 9343-9369 7 0.741
CP012323_16 16.5|3565232|27|CP012323|CRT 3565232-3565258 27 MN693796 Marine virus AFVG_250M93, complete genome 33331-33357 7 0.741
CP012323_10 10.1|2764332|37|CP012323|CRISPRCasFinder,CRT 2764332-2764368 37 NZ_CP014325 Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence 55630-55666 8 0.784
CP012323_3 3.5|1511183|36|CP012323|PILER-CR,CRISPRCasFinder,CRT 1511183-1511218 36 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 75030-75065 9 0.75
CP012323_3 3.5|1511183|36|CP012323|PILER-CR,CRISPRCasFinder,CRT 1511183-1511218 36 MT028491 Ochrobactrum phage vB_OspM_OC, complete genome 110440-110475 9 0.75
CP012323_10 10.1|2764332|37|CP012323|CRISPRCasFinder,CRT 2764332-2764368 37 NZ_CP037437 Lactobacillus plantarum strain EM plasmid pEM8, complete sequence 21201-21237 9 0.757
CP012323_15 15.1|3161784|31|CP012323|CRISPRCasFinder 3161784-3161814 31 LR606148 Rhizobium sp. Q54 genome assembly, plasmid: 5 444883-444913 9 0.71
CP012323_10 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR 2764597-2764632 36 NZ_CP015807 Borrelia mayonii strain MN14-1539 plasmid lp28-4 2136-2171 10 0.722
CP012323_10 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR 2764597-2764632 36 NZ_CP015792 Borrelia mayonii strain MN14-1420 plasmid lp28-4, complete sequence 2136-2171 10 0.722
CP012323_9 9.3|2674500|37|CP012323|PILER-CR 2674500-2674536 37 NC_025449 Escherichia phage ECML-134, complete genome 64499-64535 11 0.703
CP012323_9 9.3|2674500|37|CP012323|PILER-CR 2674500-2674536 37 KM607002 Enterobacteria phage RB55, complete genome 68097-68133 11 0.703
CP012323_9 9.3|2674500|37|CP012323|PILER-CR 2674500-2674536 37 KJ477684 Enterobacteria phage T4 strain wild, complete genome 68134-68170 11 0.703
CP012323_9 9.3|2674500|37|CP012323|PILER-CR 2674500-2674536 37 HM137666 Enterobacteria phage T4T, complete genome 68133-68169 11 0.703
CP012323_9 9.3|2674500|37|CP012323|PILER-CR 2674500-2674536 37 NC_000866 Enterobacteria phage T4, complete genome 68154-68190 11 0.703
CP012323_9 9.3|2674500|37|CP012323|PILER-CR 2674500-2674536 37 L13089 Bacteriophage T4 msp1-msp8 genes, complete cds's 2697-2733 11 0.703
CP012323_9 9.3|2674500|37|CP012323|PILER-CR 2674500-2674536 37 KJ477686 Enterobacteria phage T4 strain GT7, complete genome 68132-68168 11 0.703
CP012323_9 9.3|2674500|37|CP012323|PILER-CR 2674500-2674536 37 X57093 Bacteriophage T4 orfs between tRNA and e genes 238-274 11 0.703
CP012323_9 9.3|2674500|37|CP012323|PILER-CR 2674500-2674536 37 KJ477685 Enterobacteria phage T4 strain 147, complete genome 66027-66063 11 0.703
CP012323_9 9.3|2674500|37|CP012323|PILER-CR 2674500-2674536 37 KM607003 Enterobacteria phage RB59, complete genome 68110-68146 11 0.703

1. spacer 2.4|1300836|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 0, identity: 1.0

aatgtgattaaaaaaggacaaaagttggtgataccta	CRISPR spacer
aatgtgattaaaaaaggacaaaagttggtgataccta	Protospacer
*************************************

2. spacer 3.4|1511117|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 0, identity: 1.0

attcctagggtcgtttttttttaaaaattctatcatt	CRISPR spacer
attcctagggtcgtttttttttaaaaattctatcatt	Protospacer
*************************************

3. spacer 4.5|1620862|36|CP012323|CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 0, identity: 1.0

ttggaaataagtataaagacagtgatatggaaatgg	CRISPR spacer
ttggaaataagtataaagacagtgatatggaaatgg	Protospacer
************************************

4. spacer 4.6|1620927|37|CP012323|CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 0, identity: 1.0

tatccatttcatatttagataaaatctctttaaatgc	CRISPR spacer
tatccatttcatatttagataaaatctctttaaatgc	Protospacer
*************************************

5. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 0, identity: 1.0

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gtacctgcatggtgagtgaggttaccaagccccacccg	Protospacer
**************************************

6. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 0, identity: 1.0

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gtacctgcatggtgagtgaggttaccaagccccacccg	Protospacer
**************************************

7. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 0, identity: 1.0

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gtacctgcatggtgagtgaggttaccaagccccacccg	Protospacer
**************************************

8. spacer 5.2|1710568|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 0, identity: 1.0

ctaggtcttaaacttgcatttactaaagacatatcat	CRISPR spacer
ctaggtcttaaacttgcatttactaaagacatatcat	Protospacer
*************************************

9. spacer 5.2|1710568|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 0, identity: 1.0

ctaggtcttaaacttgcatttactaaagacatatcat	CRISPR spacer
ctaggtcttaaacttgcatttactaaagacatatcat	Protospacer
*************************************

10. spacer 5.3|1710634|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 0, identity: 1.0

tatttactattttcacagtttaaagaagtatagtaac	CRISPR spacer
tatttactattttcacagtttaaagaagtatagtaac	Protospacer
*************************************

11. spacer 5.3|1710634|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 0, identity: 1.0

tatttactattttcacagtttaaagaagtatagtaac	CRISPR spacer
tatttactattttcacagtttaaagaagtatagtaac	Protospacer
*************************************

12. spacer 6.2|1711531|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 0, identity: 1.0

aatgcagaaaaatttgaaagttgggtatttgatgaag	CRISPR spacer
aatgcagaaaaatttgaaagttgggtatttgatgaag	Protospacer
*************************************

13. spacer 6.2|1711531|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 0, identity: 1.0

aatgcagaaaaatttgaaagttgggtatttgatgaag	CRISPR spacer
aatgcagaaaaatttgaaagttgggtatttgatgaag	Protospacer
*************************************

14. spacer 6.4|1711663|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0

atgttcaattttgcatttgcacttgtagaccctgttg	CRISPR spacer
atgttcaattttgcatttgcacttgtagaccctgttg	Protospacer
*************************************

15. spacer 6.4|1711663|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0

atgttcaattttgcatttgcacttgtagaccctgttg	CRISPR spacer
atgttcaattttgcatttgcacttgtagaccctgttg	Protospacer
*************************************

16. spacer 6.4|1711663|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0

atgttcaattttgcatttgcacttgtagaccctgttg	CRISPR spacer
atgttcaattttgcatttgcacttgtagaccctgttg	Protospacer
*************************************

17. spacer 8.4|1844347|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 0, identity: 1.0

gtaatgttaaatggtatgttagcaggatttgaacaat	CRISPR spacer
gtaatgttaaatggtatgttagcaggatttgaacaat	Protospacer
*************************************

18. spacer 8.5|1844413|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 0, identity: 1.0

taacttttctgttttatcttgccagtcatttcttcta	CRISPR spacer
taacttttctgttttatcttgccagtcatttcttcta	Protospacer
*************************************

19. spacer 8.7|1844545|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 0, identity: 1.0

ctttctgcaagcttattagctccaccattatacattg	CRISPR spacer
ctttctgcaagcttattagctccaccattatacattg	Protospacer
*************************************

20. spacer 10.4|2764530|38|CP012323|CRISPRCasFinder,CRT,PILER-CR matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 0, identity: 1.0

tgttataatttatatgtaaggaactaaatatctaagag	CRISPR spacer
tgttataatttatatgtaaggaactaaatatctaagag	Protospacer
**************************************

21. spacer 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 0, identity: 1.0

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
tacattatataagatagctaaaaatcttttaggcaa	Protospacer
************************************

22. spacer 2.1|1300639|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to KX905163 (Clostridioides phage phiSemix9P1, complete genome) position: , mismatch: 1, identity: 0.973

aaagtttctatggatggtttaggggattatgatagat	CRISPR spacer
aaagtgtctatggatggtttaggggattatgatagat	Protospacer
***** *******************************

23. spacer 2.4|1300836|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 1, identity: 0.973

aatgtgattaaaaaaggacaaaagttggtgataccta	CRISPR spacer
aatgtgattaaaaaaggacaaaagttggtgatacctt	Protospacer
************************************ 

24. spacer 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 1, identity: 0.972

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatgtcaatatcaaggatacaaaattt	Protospacer
******************.*****************

25. spacer 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 1, identity: 0.972

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatgtcaatatcaaggatacaaaattt	Protospacer
******************.*****************

26. spacer 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 1, identity: 0.972

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatgtcaatatcaaggatacaaaattt	Protospacer
******************.*****************

27. spacer 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 1, identity: 0.972

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatgtcaatatcaaggatacaaaattt	Protospacer
******************.*****************

28. spacer 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 1, identity: 0.972

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatgtcaatatcaaggatacaaaattt	Protospacer
******************.*****************

29. spacer 5.3|1710634|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.973

tatttactattttcacagtttaaagaagtatagtaac	CRISPR spacer
tattcactattttcacagtttaaagaagtatagtaac	Protospacer
****.********************************

30. spacer 6.3|1711597|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG019959 (Clostridioides difficile isolate ERR017368_NODE12 plasmid pCD-WTSI1, complete sequence) position: , mismatch: 1, identity: 0.973

actccaaaattgaagtttataaaattgtaagtataag	CRISPR spacer
actccaaaattgaagtttatataattgtaagtataag	Protospacer
********************* ***************

31. spacer 6.3|1711597|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG019961 (Clostridioides difficile isolate ERR125910_NODE5 plasmid pCD-WTSI3, complete sequence) position: , mismatch: 1, identity: 0.973

actccaaaattgaagtttataaaattgtaagtataag	CRISPR spacer
actccaaaattgaagtttatataattgtaagtataag	Protospacer
********************* ***************

32. spacer 6.3|1711597|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG019962 (Clostridioides difficile isolate ERR125911_NODE11 plasmid pCD-WTSI4, complete sequence) position: , mismatch: 1, identity: 0.973

actccaaaattgaagtttataaaattgtaagtataag	CRISPR spacer
actccaaaattgaagtttatataattgtaagtataag	Protospacer
********************* ***************

33. spacer 6.3|1711597|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG019960 (Clostridioides difficile isolate ERR022513_NODE32 plasmid pCD-WTSI2, complete sequence) position: , mismatch: 1, identity: 0.973

actccaaaattgaagtttataaaattgtaagtataag	CRISPR spacer
actccaaaattgaagtttatataattgtaagtataag	Protospacer
********************* ***************

34. spacer 6.4|1711663|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.973

atgttcaattttgcatttgcacttgtagaccctgttg	CRISPR spacer
atattcaattttgcatttgcacttgtagaccctgttg	Protospacer
**.**********************************

35. spacer 8.2|1844215|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.973

aaaaataaaaccgaaaaatcgttgacaatatccgttt	CRISPR spacer
aataataaaaccgaaaaatcgttgacaatatccgttt	Protospacer
** **********************************

36. spacer 8.2|1844215|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 1, identity: 0.973

aaaaataaaaccgaaaaatcgttgacaatatccgttt	CRISPR spacer
aataataaaaccgaaaaatcgttgacaatatccgttt	Protospacer
** **********************************

37. spacer 8.2|1844215|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 1, identity: 0.973

aaaaataaaaccgaaaaatcgttgacaatatccgttt	CRISPR spacer
aataataaaaccgaaaaatcgttgacaatatccgttt	Protospacer
** **********************************

38. spacer 8.3|1844281|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 1, identity: 0.973

ctttataaagtaaaagcatatgtaggtgataacaata	CRISPR spacer
ctttataaagtaaaagcatatgtaggtgataacgata	Protospacer
*********************************.***

39. spacer 8.3|1844281|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 1, identity: 0.973

ctttataaagtaaaagcatatgtaggtgataacaata	CRISPR spacer
ctttataaagtaaaagcatatgtaggtgataacgata	Protospacer
*********************************.***

40. spacer 8.3|1844281|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 1, identity: 0.973

ctttataaagtaaaagcatatgtaggtgataacaata	CRISPR spacer
ctttataaagtaaaagcatatgtaggtgataacgata	Protospacer
*********************************.***

41. spacer 8.3|1844281|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 1, identity: 0.973

ctttataaagtaaaagcatatgtaggtgataacaata	CRISPR spacer
ctttataaagtaaaagcatatgtaggtgataacgata	Protospacer
*********************************.***

42. spacer 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 1, identity: 0.972

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
tacattatataagatagctaaaaatcttttaggtaa	Protospacer
*********************************.**

43. spacer 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 1, identity: 0.972

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
tacattatataagatagctaaaaatcttttaggtaa	Protospacer
*********************************.**

44. spacer 4.3|1620728|38|CP012323|CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 2, identity: 0.947

ctcttacgcttttcaatcactttttccttgctaaaatt	CRISPR spacer
cccttacgcttttcaatcattttttccttgctaaaatt	Protospacer
*.*****************.******************

45. spacer 4.3|1620728|38|CP012323|CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 2, identity: 0.947

ctcttacgcttttcaatcactttttccttgctaaaatt	CRISPR spacer
cccttacgcttttcaatcattttttccttgctaaaatt	Protospacer
*.*****************.******************

46. spacer 4.3|1620728|38|CP012323|CRISPRCasFinder,CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 2, identity: 0.947

ctcttacgcttttcaatcactttttccttgctaaaatt	CRISPR spacer
cccttacgcttttcaatcattttttccttgctaaaatt	Protospacer
*.*****************.******************

47. spacer 4.3|1620728|38|CP012323|CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 2, identity: 0.947

ctcttacgcttttcaatcactttttccttgctaaaatt	CRISPR spacer
cccttacgcttttcaatcattttttccttgctaaaatt	Protospacer
*.*****************.******************

48. spacer 4.7|1620993|37|CP012323|CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 2, identity: 0.946

atgttattacataaaaattcttcatctataactttaa	CRISPR spacer
atattattacataaaaattcttcgtctataactttaa	Protospacer
**.********************.*************

49. spacer 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 2, identity: 0.944

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatatcaatgtcaagaatacaaaattt	Protospacer
************.***********.***********

50. spacer 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 2, identity: 0.944

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatatcaatgtcaagaatacaaaattt	Protospacer
************.***********.***********

51. spacer 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 2, identity: 0.944

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatatcaatgtcaagaatacaaaattt	Protospacer
************.***********.***********

52. spacer 4.10|1621189|36|CP012323|CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 2, identity: 0.944

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatatcaatgtcaagaatacaaaattt	Protospacer
************.***********.***********

53. spacer 4.11|1621254|38|CP012323|CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.947

ccatcttttgttgctttacataaatttatattacttac	CRISPR spacer
ccatcttttgttgctttgcatagatttatattacttac	Protospacer
*****************.****.***************

54. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 2, identity: 0.947

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gcacctgcatggtgagtgaggttaccaagccccactcg	Protospacer
*.*********************************.**

55. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 2, identity: 0.947

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gcacctgcatggtgagtgaggttaccaagccccactcg	Protospacer
*.*********************************.**

56. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 2, identity: 0.947

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gtacttgcatggtgagtgaggttaccaagccccactcg	Protospacer
****.******************************.**

57. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 2, identity: 0.947

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gcacctgcatggtgagtgaggttaccaagccccactcg	Protospacer
*.*********************************.**

58. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 2, identity: 0.947

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gtacttgcatggtgagtgaggttaccaagccccactcg	Protospacer
****.******************************.**

59. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 2, identity: 0.947

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gtacttgcatggtgagtgaggttaccaagccccactcg	Protospacer
****.******************************.**

60. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 2, identity: 0.947

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gtacttgcatggtgagtgaggttaccaagccccactcg	Protospacer
****.******************************.**

61. spacer 5.1|1710501|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 2, identity: 0.947

gtacctgcatggtgagtgaggttaccaagccccacccg	CRISPR spacer
gtacttgcatggtgagtgaggttaccaagccccactcg	Protospacer
****.******************************.**

62. spacer 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 2, identity: 0.944

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
tacattatataagatagctaaaaatctcttaggtaa	Protospacer
***************************.*****.**

63. spacer 16.5|3565232|27|CP012323|CRT matches to NZ_CP014284 (Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence) position: , mismatch: 2, identity: 0.926

agttgctccggttgctcctgtatttcc	CRISPR spacer
ggttgctccggtggctcctgtatttcc	Protospacer
.*********** **************

64. spacer 16.5|3565232|27|CP012323|CRT matches to NZ_CP032609 (Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence) position: , mismatch: 2, identity: 0.926

agttgctccggttgctcctgtatttcc	CRISPR spacer
ggttgctccggtggctcctgtatttcc	Protospacer
.*********** **************

65. spacer 2.4|1300836|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 3, identity: 0.919

aatgtgattaaaaaaggacaaaagttggtgataccta	CRISPR spacer
aatataattaaaaaaggacaaaagttggtgatacctt	Protospacer
***.*.****************************** 

66. spacer 5.4|1710700|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 3, identity: 0.921

atcgccttccagattacttttgtatatgaggtcagcaa	CRISPR spacer
gtcgccttccaggttacttttatatatgaggtcagcaa	Protospacer
.***********.********.****************

67. spacer 5.4|1710700|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 3, identity: 0.921

atcgccttccagattacttttgtatatgaggtcagcaa	CRISPR spacer
gtcgccttccaggttacttttatatatgaggtcagcaa	Protospacer
.***********.********.****************

68. spacer 5.4|1710700|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 3, identity: 0.921

atcgccttccagattacttttgtatatgaggtcagcaa	CRISPR spacer
gtcgccttccaggttacttttatatatgaggtcagcaa	Protospacer
.***********.********.****************

69. spacer 8.8|1844611|38|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 3, identity: 0.921

tttataacctttaattacacctcccatatcactaccac	CRISPR spacer
cttgtaacctttaattacacctcccatatcaccaccac	Protospacer
.**.****************************.*****

70. spacer 6.7|1711861|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 4, identity: 0.892

actaaaggagtttctttgttctttatgctctacaact	CRISPR spacer
actgtgagagtttctttgttctttatgctctacaact	Protospacer
***. ..******************************

71. spacer 6.7|1711861|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 4, identity: 0.892

actaaaggagtttctttgttctttatgctctacaact	CRISPR spacer
actgtgagagtttctttgttctttatgctctacaact	Protospacer
***. ..******************************

72. spacer 6.7|1711861|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 4, identity: 0.892

actaaaggagtttctttgttctttatgctctacaact	CRISPR spacer
actgtgagagtttctttgttctttatgctctacaact	Protospacer
***. ..******************************

73. spacer 16.5|3565232|27|CP012323|CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.815

agttgctccggttgctcctgtatttcc	CRISPR spacer
agttgctccggttgctccggttgcccc	Protospacer
****************** **  ..**

74. spacer 16.5|3565232|27|CP012323|CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.815

agttgctccggttgctcctgtatttcc	CRISPR spacer
ggttgctccggttgctcctgctcctcc	Protospacer
.*******************. ..***

75. spacer 16.6|3565286|27|CP012323|CRT matches to MN694018 (Marine virus AFVG_250M586, complete genome) position: , mismatch: 5, identity: 0.815

agtcgctcctgtatttcctgttggacc	CRISPR spacer
gctcgctcctgtatcgcctgttggact	Protospacer
. ************. **********.

76. spacer 16.6|3565286|27|CP012323|CRT matches to MN694665 (Marine virus AFVG_250M495, complete genome) position: , mismatch: 5, identity: 0.815

agtcgctcctgtatttcctgttggacc	CRISPR spacer
cgatgctcctgtacttcctgttgaacc	Protospacer
 * .*********.*********.***

77. spacer 3.1|1510918|37|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to MK448896 (Streptococcus phage Javan278, complete genome) position: , mismatch: 6, identity: 0.838

-tgattttgtattttaaaaacgaagttttcaaagttgt	CRISPR spacer
atgacattg-attttaaaaaccaagttttcagagttga	Protospacer
 ***. *** *********** *********.***** 

78. spacer 16.5|3565232|27|CP012323|CRT matches to MN694581 (Marine virus AFVG_250M102, complete genome) position: , mismatch: 6, identity: 0.778

agttgctccggttgctcctgtatttcc	CRISPR spacer
ggttgctccggttgctcgtgtaactgg	Protospacer
.**************** **** .*  

79. spacer 16.5|3565232|27|CP012323|CRT matches to MN694664 (Marine virus AFVG_250M101, complete genome) position: , mismatch: 7, identity: 0.741

agttgctccggttgctcctgtatttcc	CRISPR spacer
ggttgctccggttgctcgtgtaaccgg	Protospacer
.**************** **** ..  

80. spacer 16.5|3565232|27|CP012323|CRT matches to MN694569 (Marine virus AFVG_250M103, complete genome) position: , mismatch: 7, identity: 0.741

agttgctccggttgctcctgtatttcc	CRISPR spacer
ggttgctccggttgctcgtgtaaccgg	Protospacer
.**************** **** ..  

81. spacer 16.5|3565232|27|CP012323|CRT matches to MN693796 (Marine virus AFVG_250M93, complete genome) position: , mismatch: 7, identity: 0.741

agttgctccggttgctcctgtatttcc	CRISPR spacer
ggttgctccggttgctcgtgtaaccgg	Protospacer
.**************** **** ..  

82. spacer 10.1|2764332|37|CP012323|CRISPRCasFinder,CRT matches to NZ_CP014325 (Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence) position: , mismatch: 8, identity: 0.784

cttaaagctac---ataataaaaaattaagaaaaagaaaa	CRISPR spacer
---aaacttatgagataataaaaacttaacaaaaagaaaa	Protospacer
   *** .**.   ********** **** **********

83. spacer 3.5|1511183|36|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 9, identity: 0.75

aattttatatttaaataatctaaattctcagttata	CRISPR spacer
cattttatttttaaataatttaaattctcgatagct	Protospacer
 ******* **********.*********..* .. 

84. spacer 3.5|1511183|36|CP012323|PILER-CR,CRISPRCasFinder,CRT matches to MT028491 (Ochrobactrum phage vB_OspM_OC, complete genome) position: , mismatch: 9, identity: 0.75

aattttatatttaaataatctaaatt--ctcagttata	CRISPR spacer
aaatttatatttaaagaatctaaattaagcaagcga--	Protospacer
** ************ **********   . **. *  

85. spacer 10.1|2764332|37|CP012323|CRISPRCasFinder,CRT matches to NZ_CP037437 (Lactobacillus plantarum strain EM plasmid pEM8, complete sequence) position: , mismatch: 9, identity: 0.757

cttaaagct------acataataaaaaattaagaaaaagaaaa	CRISPR spacer
------gcttgttagatataataaaaaatcaataaaaagaaaa	Protospacer
      ***      *.************.** **********

86. spacer 15.1|3161784|31|CP012323|CRISPRCasFinder matches to LR606148 (Rhizobium sp. Q54 genome assembly, plasmid: 5) position: , mismatch: 9, identity: 0.71

cactatctctggtattggcggatttatcata	CRISPR spacer
cgagcaacttggtattggcggatttatgata	Protospacer
*.     ..****************** ***

87. spacer 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015807 (Borrelia mayonii strain MN14-1539 plasmid lp28-4) position: , mismatch: 10, identity: 0.722

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
ataaatatataaaatagctaaaaatcatttatcaat	Protospacer
   * *******.************* ****   * 

88. spacer 10.5|2764597|36|CP012323|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015792 (Borrelia mayonii strain MN14-1420 plasmid lp28-4, complete sequence) position: , mismatch: 10, identity: 0.722

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
ataaatatataaaatagctaaaaatcatttatcaat	Protospacer
   * *******.************* ****   * 

89. spacer 9.3|2674500|37|CP012323|PILER-CR matches to NC_025449 (Escherichia phage ECML-134, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cactccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

90. spacer 9.3|2674500|37|CP012323|PILER-CR matches to KM607002 (Enterobacteria phage RB55, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

91. spacer 9.3|2674500|37|CP012323|PILER-CR matches to KJ477684 (Enterobacteria phage T4 strain wild, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

92. spacer 9.3|2674500|37|CP012323|PILER-CR matches to HM137666 (Enterobacteria phage T4T, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

93. spacer 9.3|2674500|37|CP012323|PILER-CR matches to NC_000866 (Enterobacteria phage T4, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

94. spacer 9.3|2674500|37|CP012323|PILER-CR matches to L13089 (Bacteriophage T4 msp1-msp8 genes, complete cds's) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

95. spacer 9.3|2674500|37|CP012323|PILER-CR matches to KJ477686 (Enterobacteria phage T4 strain GT7, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

96. spacer 9.3|2674500|37|CP012323|PILER-CR matches to X57093 (Bacteriophage T4 orfs between tRNA and e genes) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

97. spacer 9.3|2674500|37|CP012323|PILER-CR matches to KJ477685 (Enterobacteria phage T4 strain 147, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

98. spacer 9.3|2674500|37|CP012323|PILER-CR matches to KM607003 (Enterobacteria phage RB59, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 276837 : 288633 9 Synechococcus_phage(37.5%) NA NA
DBSCAN-SWA_2 605680 : 649399 34 Streptococcus_phage(33.33%) transposase,tRNA,coat NA
DBSCAN-SWA_3 724184 : 787060 51 Bacillus_phage(26.32%) protease,transposase,integrase attL 772221:772243|attR 782421:782443
DBSCAN-SWA_4 1435472 : 1459914 29 Clostridium_phage(54.55%) tail NA
DBSCAN-SWA_5 1541500 : 1551229 11 Pandoravirus(37.5%) NA NA
DBSCAN-SWA_6 1676892 : 1731143 74 Clostridium_phage(93.55%) portal,tail,terminase,capsid,head NA
DBSCAN-SWA_7 2063178 : 2070422 8 Clostridium_phage(50.0%) transposase NA
DBSCAN-SWA_8 2435777 : 2510518 60 Clostridium_phage(35.29%) protease,tail,tRNA,holin NA
DBSCAN-SWA_9 2758927 : 2767720 11 Clostridium_phage(66.67%) holin,integrase attL 2766205:2766220|attR 2768338:2768353
DBSCAN-SWA_10 3075971 : 3084924 8 Catovirus(50.0%) NA NA
DBSCAN-SWA_11 3574729 : 3596018 27 Streptococcus_phage(88.89%) integrase attL 3569075:3569090|attR 3595679:3595694
DBSCAN-SWA_12 3615745 : 3727773 132 Clostridium_phage(78.05%) protease,portal,integrase,tail,terminase,tRNA,capsid,head attL 3612458:3612479|attR 3727270:3727291
DBSCAN-SWA_13 3778527 : 3790927 8 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_14 3793970 : 3800545 11 Streptococcus_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage