CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	15 crisprs	cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,csa3,cas14k,cas5,cas7,cas6	2	34	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP016102_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_1

32087-32179

Orphan

Consensus_repeat	Method
GTTGGCGCTGTGCGTTAGCACTTTAAGCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016102_1

>merge|CP016102|1|32087-32179|CRISPRCasFinder
GTTGGCGCTGTGCGTTAGCACTTTAAGCAACAGAATAAACTGAACGCATGTGAAGTTTGTTTGTTGGCGCTGTGCGTTAGCACTTTAAGCAAC

>CP016102|1|1|32087-32179|CRISPRCasFinder
GTTGGCGCTGTGCGTTAGCACTTTAAGCAAC	AGAATAAACTGAACGCATGTGAAGTTTGTTT
GTTGGCGCTGTGCGTTAGCACTTTAAGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU44647.1\|39870_39966_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU44640.1\|24776_25232_+\|cytosine/adenosine-deaminase	unknown	unknown	gnl\|CDD\|223663
CP016102.1\|AXU44650.1\|46218_46692_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226869
CP016102.1\|AXU44643.1\|27761_28361_+\|recombination-protein	unknown	unknown	gnl\|CDD\|234616
CP016102.1\|AXU44636.1\|9856_10630_+\|RNA-polymerase-sigma-B-factor	unknown	unknown	gnl\|CDD\|274373
CP016102.1\|AXU44641.1\|25702_27340_+\|DNA-polymerase-III-subunits-gamma/tau	unknown	unknown	gnl\|CDD\|235505
CP016102.1\|AXU44646.1\|39447_39861_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU44654.1\|50847_52221_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
CP016102.1\|AXU44652.1\|47208_48234_+\|ATP:guanido-phosphotransferase	unknown	unknown	gnl\|CDD\|234894
CP016102.1\|AXU44651.1\|46698_47193_+\|DNA-repair-protein	unknown	unknown	gnl\|CDD\|226397
CP016102.1\|AXU44642.1\|27398_27749_+\|DNA-binding-protein,-YbaB/EbfC-family	unknown	unknown	gnl\|CDD\|234669
CP016102.1\|AXU44653.1\|48220_50668_+\|ATP-dependent-Clp-protease	unknown	unknown	gnl\|CDD\|223616
CP016102.1\|AXU44645.1\|28794_30000_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|340861
CP016102.1\|AXU44644.1\|28502_28724_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU44637.1\|21323_21833_+\|small-molecule-binding-protein	unknown	unknown	gnl\|CDD\|224740
CP016102.1\|AXU44639.1\|23184_24456_+\|seryl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235461
CP016102.1\|AXU44655.1\|52223_53294_+\|DNA-integrity-scanning-protein-DisA	unknown	unknown	gnl\|CDD\|237395
CP016102.1\|AXU44648.1\|40169_43601_+\|pyruvate-carboxylase	unknown	unknown	gnl\|CDD\|237263
CP016102.1\|AXU44649.1\|43842_45771_+\|translation-elongation-factor	unknown	unknown	gnl\|CDD\|237186
CP016102.1\|AXU44638.1\|21844_22726_+\|mechanosensitive-ion-channel-protein	unknown	unknown	gnl\|CDD\|182386

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU44640.1\|24776_25232_+\|cytosine/adenosine-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	7.52683e-52
CP016102.1\|AXU44650.1\|46218_46692_+\|transcriptional-regulator	gnl\|CDD\|226869	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription].	8.79662e-42
CP016102.1\|AXU44645.1\|28794_30000_-\|glycosyl-transferase	gnl\|CDD\|340861	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins. beta-diglucosyldiacylglycerol synthase (processive diacylglycerol beta-glucosyltransferase EC 2.4.1.315) is involved in the biosynthesis of both the bilayer- and non-bilayer-forming membrane glucolipids. This family of glycosyltransferases also contains plant major galactolipid synthase (chloroplastic monogalactosyldiacylglycerol synthase 1 EC 2.4.1.46). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.60211e-148
CP016102.1\|AXU44636.1\|9856_10630_+\|RNA-polymerase-sigma-B-factor	gnl\|CDD\|274373	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily. This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:TIGR02885 and SigG:TIGR02850 as well as SigB:TIGR02941), and the high GC gram positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.	6.4918e-87
CP016102.1\|AXU44641.1\|25702_27340_+\|DNA-polymerase-III-subunits-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
CP016102.1\|AXU44643.1\|27761_28361_+\|recombination-protein	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	6.04881e-129
CP016102.1\|AXU44652.1\|47208_48234_+\|ATP:guanido-phosphotransferase	gnl\|CDD\|234894	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional.	1.50225e-165
CP016102.1\|AXU44651.1\|46698_47193_+\|DNA-repair-protein	gnl\|CDD\|226397	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms].	2.05547e-43
CP016102.1\|AXU44642.1\|27398_27749_+\|DNA-binding-protein,-YbaB/EbfC-family	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	1.04649e-45
CP016102.1\|AXU44654.1\|50847_52221_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
CP016102.1\|AXU44655.1\|52223_53294_+\|DNA-integrity-scanning-protein-DisA	gnl\|CDD\|237395	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional.	0
CP016102.1\|AXU44653.1\|48220_50668_+\|ATP-dependent-Clp-protease	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
CP016102.1\|AXU44637.1\|21323_21833_+\|small-molecule-binding-protein	gnl\|CDD\|224740	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only].	8.64345e-43
CP016102.1\|AXU44639.1\|23184_24456_+\|seryl-tRNA-synthetase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP016102.1\|AXU44648.1\|40169_43601_+\|pyruvate-carboxylase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	0
CP016102.1\|AXU44649.1\|43842_45771_+\|translation-elongation-factor	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
CP016102.1\|AXU44638.1\|21844_22726_+\|mechanosensitive-ion-channel-protein	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	1.72542e-62

>CP016102.1|AXU44645.1|28794_30000_-|glycosyl-transferase
MSKKVLIMSASTGGGHNRAALAIKEELTSKTLDGEPIECEIIDSLKLVNNTMDKIISRGYEKSAIYTPKAYGSVYRLSETNLLSKNEFKDNLLITFMAKKFKKLIRSEKPDLIIGTHPFPMIALSTLKKNFNLHNNESNAYTEHFYKHYTNTINVPPLISVLTDYTTHSTWIQNEIDYYIVGHEYVKELLVFDGVEPSKIRTFGIPVEKSFLSHRDKDIVLSELNLSPDKLTVLLMGGSFGAGNIKETLDELLDTDRDFQILVITGKNESLKEKIEKKLMSRYHDKNVCVLGYTDKMNDILASIDVLVSKPGGLTTTEALLKDVPMIVPYYIPGQEEENLDFLSNCGAALRTTKKYNLSILLKVLIDDPSRLEMLKRNIKSIRKSNSAQNIANLILNIISG
>CP016102.1|AXU44644.1|28502_28724_+|hypothetical-protein
MKPIMNLEEHNAMKEKRVKKMKSKDKPKYDDFEDISFSNKKKTKKNVRNKNAEFRNNYKNYQYDYEEDFYEPI
>CP016102.1|AXU44643.1|27761_28361_+|recombination-protein
MQVYTGPITRLIEEFSKLPGVGRKTAQRLAFHIINMNTNDVEALSKAIIDAKREIRYCSICCNITDTDPCSMCSNKSRDSSVICVVEDPRDVAAMERTREFKGQYHVLNGVISPMDGIGPDMLKIKELIQRLGNQEVKEIIMATNPTIEGEATAMYIARLVKPMGIKVTRIAHGLPVGGDLEYADEVTISKALEGRREI
>CP016102.1|AXU44642.1|27398_27749_+|DNA-binding-protein,-YbaB/EbfC-family
MAKKGFGGGMMPGGGNMNNLLKQAQKMQENMQKAQQELESKEVEASVGGGAVTVKVNGKKEVIDITIKPEVVDPDDIEMLQDLVLSAVNQALRNIDDIQASQMSKVTGGMNIPGLF
>CP016102.1|AXU44641.1|25702_27340_+|DNA-polymerase-III-subunits-gamma/tau
MHKALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNCLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELMGSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDLIDHFRNLMVCKVSSELDEIISLPEETIEQLKIQSKNIDINDLIRILNILSITQDDIKSSSNPRVLVEITIMKIAQPMFDESKEALIKRVENLEKMIELGNFKSEKIGNNKEKKYEVDREIDVKQENVVYEDVKNEDVILIESSWKNILKQIKKDKKMPIYALLSEVKSFNVYSNMLYVIFDDKFDFAKTRLSSQDTINYLEKTIRDVLNRSFNVKIVLTSEVKDINLEVKEKKDIGEEILKNIVSEEILEIKDSIDENESK
>CP016102.1|AXU44640.1|24776_25232_+|cytosine/adenosine-deaminase
MESSFYMKEALKEAYKAYNKKETPIGAIIVKDNQIIARAHNLTETLKDSTAHAEILAIKQASEKLGGWRLTDCDLYVTMEPCIMCSGAIVNSRIKKLIIGTRHVKNSYIEKQHEFKLDYFNNNNVKVAFDVLQEECSIILQEFFKALRKRD
>CP016102.1|AXU44639.1|23184_24456_+|seryl-tRNA-synthetase
MLDIKRIRENLDDIKKAMERRGEREFDLDAVVELDNKRREILQEVEVMKNELNVNSKKIPQLIKEGKDVTEEKARLKELSDKIKGIDEKVKEVEAKMEYTLMRIPNVPHPEVPQGETDEDNVQIRTWGEPTKFDFEHKAHWDIGTGLGILDFERAGKITGSRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQLPKFEEDMFKIEGLEYFLIPTAEVPVTNIHANEILDVAELPIKYCAYTPCFRSEAGSAGRDTRGLVRQHQFNKVELVKFVKPEDSYNELESLTHDAETMLQMLGLPYRVVKICTGDLGFTAAFKYDLEVWMPSYNRYVEISSCSNFEDFQARRAGIRFKRDKKSKAEYVHTLNGSGLAIGRCLAAILENYQQADGSVVVPEELRPYMGVDVIR
>CP016102.1|AXU44638.1|21844_22726_+|mechanosensitive-ion-channel-protein
MNFLSLAKTASTNSNITKRTLENMLDNFSDNIPNIIYAIIVFVIGIYISKIVRRMVSKFLIKYGMSKGVNNFIVYGIYISMLSIISLISLGIIGIQTTSVVAVLGAAGFSIGLAFKEILSNLGSGMIILFFKPFNIGDYIQGSGVEGTVSDIQIFSTVLKTPDNKTIIIPNFQLTSNNIINYTHQNKRRIDFSYNISYDSDIDVVKSILNEIFTNEKRILNDPKPIIGLNSIGNNTMQIVARPWVKTDDYWDVYFDVMEKVKNKFDENDIKVPFVPSSLLFNNTGNLNTMDKR
>CP016102.1|AXU44637.1|21323_21833_+|small-molecule-binding-protein
MNSNERRSKLIDILKESKHPVKGGILAELLNVSRQVIVQDIALIRARGFEIIATPQGYIIYNQPYFTKQIKCKNHKDSKEIYDELKIIVDLGGIIKDVIVNHPTYGQITAELNIYSKMDIDNFMKKVETNEFKQLSVLTECSHIHTIEAIKEETIEAIVKELKDNGILS
>CP016102.1|AXU44636.1|9856_10630_+|RNA-polymerase-sigma-B-factor
MKNVANATHYLNMDTKELFNLYNKNKNVDIRNILIERHLYLARLLAKKYINKGVDFEDIYQVASLALIYAIDRYDVEKGFEFSSFATPTIVGEIKKYFRDKVWTLRVPRRIQELSKKISDAKIKLEQENKKHPKVKDIADYIGVSEEDVLEAMEASYGYQPMSLDSSSNDDSEDKDITLIDKIGKEEGNFGSIEYEDFINKFIETLNELEVKIFKDRFFFDKTQSSIAKELGISQMTVSRLEKKVVEKLKKEYEKNL
>CP016102.1|AXU44646.1|39447_39861_+|hypothetical-protein
MYIVIGNEIVDSEELKIIIDKNSKFKVEKDLSKSTKREDVIAYQLSIDLNYLDSLINEQCNLASLSDEEKFDEYMTLSDELALDLEELMPKYTIINARAYKLDEVDGIVKIILVVAYADLGHLKLSDVVKRLSRQVD
>CP016102.1|AXU44647.1|39870_39966_+|hypothetical-protein
MNYIKKMYKILRKDENNYVNIEKNSIKSSQL
>CP016102.1|AXU44648.1|40169_43601_+|pyruvate-carboxylase
MLKKFNKILVANRGEIAIRIFRACSELGIKSVGIYSKEDKYGLFRTKADESYLIGEGKGPIDAYLDMDGIIDLAKRKKVDAIHPGYGFLAENAEFARKCEENGITFIGPSSKVMNMMGDKINSKKIAKEVNVQTIPGVEKAIRSTEEAKEVANKIGYPVMIKASNGGGGRGMRIVHREEDLELEYETACSESRKAFGEDIIFIEKYIADPKHIEVQILGDNYGNIVHLYERDCSVQRRHQKIIEYAPAFSLDDKVRKEICEDAVKLSKHVGYSNAGTLEFLVDANGGHYFIEMNTRVQVEHTVTEMVTGIDIVQSQILIAQGYSLDSEEINIKSQDDVEIRGYSIQCRITTEDPKNKFMPDTGKIQVYRTGSGFGIRLDGGNGFTGANISPHYDSLLVKTISWDRTFQGAINKTIRSIKELRVRGVKTNVGFLVNVLNNPIFSNGKCSTKFIDENPDLFEITESKDRGTKLLQFIGDVIVNDNACKEKPLFDALHDPRMDKDGSKSEGSKILFDKLGKSAYIEKIKNDKKLLLTDTTMRDAHQSLLATRIRTYDLLKAAKPTEKYQKDLFSLEMWGGATYDVAYRFLKESPWRRLQKLREEIPSIMFQMLLRASNGVGYKNYPDNVIEEFTKESARQGIDVFRIFDSLNWVENMKPSINTALETGKIVEATMCYTGDILDKTKTKYNLEYYIKMAQELESLGADIIAIKDMSGLLKPYSAYTLVKELKKNVKAPIHLHTHDTSGNGVATCLMASEAGVDIIDAALESMAGLTSQPSLNAIVEALKNTERDTGIDLFGYDELGKYYKDLRKVYNKFESDLTNSCAEIYNFEIPGGQYTNLKPQADSLGLVNRFDEVKEKYKEANEVVGDIIKVTPSSKVVGDLAIFMTKNKLDKDNIIEEGKNLSFPDSVVDYCKGMIGQPEGGIPKDLQEVVLKGEEAITVRPGSLLPAEDFDEIAKYLNEKYDINANIRNVISYALYPKVYEDYIKHLQHYNDISKLESDVFFYGLNKNEECEVEIEEGKVLTIRLVEIGEVKENGFRTIGFELNGMVREVEIKDKNFSGKINNVEKADMNDPLQIGASIPGKVIKIMVKEEDEVKANQPLIVIEAMKMETIIVAKTDGVIKSIKVKEDDMVEDKQLLMIMK
>CP016102.1|AXU44649.1|43842_45771_+|translation-elongation-factor
MKVYDSKMLRNVAVLGHSGCGKTNLIETIAYTANTNKIPKLTDKVNMTYSMGLIPIEYNDYKFNLLDTPGYFDFSGDVVSSLRASDAAIIVIDATAPIQVGTEKSLELTESIPKIMFINKIDNEKARYKDAIAMLREKYNNKIVPMISPIYKDKNFVKLHNVFENIDDLEGEFKEQAMSVKEALMELIAETDDQILDKYFNGEELTTEEIQKGIIIGIQRGDIIPVICGSTINNIGTKEILDTISSYLEPIFTEESKPFRGLVFKTMVDPFVGKMSYIKITEGVLSKDKDVFNINKNVKEKIANIYTLRNSELVEIEKAKAGDIVVITKVNSLKTGDTISADKDAEALEKIDFPKPQIYYAVTPKNKGDEEKVASVLNKLVEEDPTLHWYRNTETKQALLGGQGELHIKTIKNKMKDKFGVDVELNDLKVPYRETIKGTADVQGKHKKQSGGHGQYGDVKIRFERCESDFEFTEEIFGGSVPKQYIPAVEKGLKDSMQKGILAGYPVTNIKATLYDGSYHDVDSSEMAFKMAASAAFKKGMEEAHPILLEPIMKLKITVPEEYMGDVMGDINKRRGKIFGMEPDDKGKQIIFAEAPQAETFKYAIDLRAMTQGRGYFEMELERYGEVPSQFAEKIIGLATAK
>CP016102.1|AXU44650.1|46218_46692_+|transcriptional-regulator
MILMATMTDIIEKFIKDLMEEDNSIQIQRNELANLFSCAPSQINYVLTTRFTIDRGYYIESKKGGGGYVQIEKIRKSKDGHIRELLNEKIGSQISYKKAKELLEGLKESDLINERELKLILYAIDDKSLCMPIYELKEKVRSNILKNIIIGLFSIEE
>CP016102.1|AXU44651.1|46698_47193_+|DNA-repair-protein
MLCQKCNKNKASVYYNKIVNGEKTEMYLCSECAKENTEMNFNLDMPFSMMDIFSNLGFQPKKELEEKLVCPKCNTTYSEFKNNGRFGCSECYNAFSSQVNPMLQNIHGHIEHTGKAPKKSFYKISVENEIKELKEDLDRAIKNEEYELAAQFRDKIKYLKGSID
>CP016102.1|AXU44652.1|47208_48234_+|ATP:guanido-phosphotransferase
MKENIVMKSRVRLARNLNNYPFPNKLDKECAMEIIEKVKNAFINSNLEQKEEFDFYKIEDLDQSKKMLMVEEHIISPDLAENDKSAVIVKKDKTISIMINEEDHIRIQTICDDLNLEYAYSVANEIDDLLESSLEYAFNTKLGYLTSCPTNTGTGMRASVMMHLPALSQLGYMDELYKISSQIGIAIRGIYGERTEALGNIYQISNQLTLGRTESNIIENVSGLTKDAISKEIKAREILQKKLGIKLEDKIFRSIGTLENSRVMSSAEAMSHLSNIKMGIEMNYIDKLDLKAIEQLMIGIQPAHQSIMYKSDDVENRDINRATYIRETLEKLRGGMNCELQ
>CP016102.1|AXU44653.1|48220_50668_+|ATP-dependent-Clp-protease
MNFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEEISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMMGISDKNQYKAENSYTGNQNQAESKVLDKYGRNLTLYAKQNKIDPVIGREKEIQRVIQILSRRTKNNPVLIGDPGVGKTAIAEGLATNIALGNVPETLKNKTLYSLEMGSLLAGAKYRGEFEERIKEVVDEVVKNGNIILFIDEMHTIIGAGSTGEGSIDASNILKPALARGEIQVIGATTIDEYRKHVEKDSALERRFQPVMVDEPTKEDSIKILEGLRDKYEAHHKVKITDDAIKAAVELSTRYISDRYLPDKAIDLIDEAASKVRLKENTPPSEIKKLELEIENIDKEKEEAVRCQDFEKAAKIRDEQGLLKKQLEDVRERWNKSSKHSDLVDGEVIAEVVGLWTGIPVNKILEEEADRLLRLEEILHNRVIGQEQAVKSISKAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTELSKALAEVQFGDENQIIRIDMSEYMEKHAVSRMIGSPPGYVGHDEGGQLTEKVRRNPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSKGRTVDFKNTIVIMTSNVGASTIGRQKTLGFSIAKGDEEEKSQYEKMKENIMGELKQRFRPEFLNRIDDIIVFHSLNENHISKIVLLMAAKLQERLKEMDIKLEMSDEAVKLISKSGFDLEYGARPLKRALQKELEDELSEAILKGNVKKGSNVVAKVKDEKIVFETK
>CP016102.1|AXU44654.1|50847_52221_+|DNA-repair-protein-RadA
MAKIKTKYVCQSCGYETAKWLGKCPECTKWNTFVEEIDQKSTKKEVFIIDKSSSKPVSINSIESKEEERFTTDINELDRVLGGGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRAKRLGINSENLYIFAENNLSIIESYLESVNPELIILDSIQTVFSPEISSAPGTVSQIKEGTSKFMKISKKMGISTFIVGHVTKEGSLAGPKLLEHMVDTVLYFEGERYNTYRLVRAVKNRFGSTNELGVFEMRDLGLVELDNPSKILISEKPKDVAGSVIISTVEGTRPMLLELQALVSPTSFGIPKRTSTGVDYNRVGMLLAVLEKRVGLQIQNQDVYINIVGGIKINEPSIDLGIAISVASSFRNIPIDEDIAVTGEVGLTGEVRAVSFIEKRIAECKKLGFKKIVVPRSNYDVVKETKGIEMWPVDNLRQAINIVLGRNQ
>CP016102.1|AXU44655.1|52223_53294_+|DNA-integrity-scanning-protein-DisA
MENFLDNKNMLYALKMISPGTPLRLGLNNVLRAKTGGLIVIATNEDVMKIVDGGFAINAEYSPSYLYELAKMDGAIVLSGDVKKILFANAQLIPDYFIETSETGTRHRTAERVAKQTGAIVIGISQRRNVITVYRGNEKYVVEDISKIFTKANQAIQTLEKYKTVLDQAITNLNALEFNDLVTIYDVALVMQKMEMVMRVTSIIEKYVIELGDEGTLVSMQLEELMGTTRIDQKLIFKDYNKENTEIKELMKKVKNLNSEELIELVNMAKLLGYSGFSESMDMPIKTRGYRILSKIHRLPTAIIENLVNYFENFQQILDASIEELDEVEGIGEIRATYIKNGLIKMKQLVLLDRHI

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Crispr_ID: CP016102_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_2

629101-629225

Orphan

Consensus_repeat	Method
TGATGGTTGATAAGAATAGTAAGAAAAAAATAGATAATTAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016102_2

>merge|CP016102|2|629101-629225|CRISPRCasFinder
TGATGGTTGATAAGAATAGTAAGAAAAAAATAGATAATTAAAGAGTTAGAGTGAAAGAGTAATCGTAAAATAAATATATGGATGATGGTTGATAAGAATAGTAAGAAAAAATAGATAATTAAAGG

>CP016102|2|2|629101-629225|CRISPRCasFinder
TGATGGTTGATAAGAATAGTAAGAAAAAAATAGATAATTAAAG	AGTTAGAGTGAAAGAGTAATCGTAAAATAAATATATGGA
TGATGGTTGATAAGAATAGTAAGAAAAAATAGATAATTAAAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU45147.1\|620248_621052_+\|chemotaxis-protein-methyltransferase	unknown	unknown	gnl\|CDD\|224271
CP016102.1\|AXU45151.1\|623803_624415_+\|lipoprotein	unknown	unknown	unknown
CP016102.1\|AXU45165.1\|640075_640639_+\|regulatory-protein,-arsr	unknown	unknown	gnl\|CDD\|378968
CP016102.1\|AXU45155.1\|627813_628224_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366959
CP016102.1\|AXU45153.1\|625845_626205_+\|penicillin-binding-protein-repressor	unknown	unknown	gnl\|CDD\|367747
CP016102.1\|AXU45150.1\|622723_623713_+\|ornithine-cyclodeaminase	unknown	unknown	gnl\|CDD\|236313
CP016102.1\|AXU45148.1\|621091_621688_+\|chemotaxis-like-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|319751
CP016102.1\|AXU45157.1\|630563_631835_-\|spore-peptidoglycan-hydrolase	unknown	unknown	gnl\|CDD\|366659
CP016102.1\|AXU45154.1\|626215_627598_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|320700
CP016102.1\|AXU45161.1\|634986_635523_+\|singal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
CP016102.1\|AXU45158.1\|632079_632796_+\|spore-cortex-lytic-protein	unknown	unknown	gnl\|CDD\|379143
CP016102.1\|AXU45149.1\|621793_622657_+\|copper-amine-oxidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379356
CP016102.1\|AXU45164.1\|639048_639978_+\|glutaminase	unknown	unknown	gnl\|CDD\|274797
CP016102.1\|AXU45163.1\|636361_638029_+\|phosphoribulokinase/uridine-kinase	unknown	unknown	gnl\|CDD\|238986
CP016102.1\|AXU45159.1\|632874_634185_+\|methylase	unknown	unknown	gnl\|CDD\|183387
CP016102.1\|AXU45152.1\|624861_625641_+\|membrane-protein	unknown	unknown	gnl\|CDD\|283754
CP016102.1\|AXU45160.1\|634284_634821_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
CP016102.1\|AXU45162.1\|635532_636288_+\|endonuclease	unknown	unknown	gnl\|CDD\|366542
CP016102.1\|AXU45156.1\|629436_630093_+\|membrane-protein	unknown	unknown	unknown
CP016102.1\|AXU45146.1\|619772_620213_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|238374

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU45147.1\|620248_621052_+\|chemotaxis-protein-methyltransferase	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	1.30894e-87
CP016102.1\|AXU45165.1\|640075_640639_+\|regulatory-protein,-arsr	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	8.1445e-11
CP016102.1\|AXU45155.1\|627813_628224_+\|hypothetical-protein	gnl\|CDD\|366959	pfam02181, FH2, Formin Homology 2 Domain.	0.00437435
CP016102.1\|AXU45153.1\|625845_626205_+\|penicillin-binding-protein-repressor	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	2.78956e-27
CP016102.1\|AXU45150.1\|622723_623713_+\|ornithine-cyclodeaminase	gnl\|CDD\|236313	PRK08618, PRK08618, ornithine cyclodeaminase family protein.	0
CP016102.1\|AXU45148.1\|621091_621688_+\|chemotaxis-like-protein-glutamate-methylesterase	gnl\|CDD\|319751	cd16432, CheB_Rec, Chemotaxis response regulator protein-glutamate methylesterase, CheB, with N-terminal REC domain. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain with a REC domain at the N-terminus. CheB is a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. The N-terminal regulatory (REC) domain blocks the active site of the C-terminal domain until it is phosphorylated. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	6.66802e-91
CP016102.1\|AXU45157.1\|630563_631835_-\|spore-peptidoglycan-hydrolase	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.30519e-11
CP016102.1\|AXU45154.1\|626215_627598_+\|penicillin-binding-protein	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	4.08749e-43
CP016102.1\|AXU45161.1\|634986_635523_+\|singal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	7.44134e-44
CP016102.1\|AXU45158.1\|632079_632796_+\|spore-cortex-lytic-protein	gnl\|CDD\|379143	pfam13367, PrsW-protease, Protease prsW family. This is a family of putative peptidases, possibly belonging to the MEROPS M79 family. PrsW, appears to be a member of a widespread family of membrane proteins that includes at least one previously known protease. PrsW appears to be responsible for Site-1 cleavage of the RsiW anti-sigma factor, the cognate anti-sigma factor, and it senses antimicrobial peptides that damage the cell membrane and other agents that cause cell envelope stress, The three acidic residues, E75, E76 and E95 in Aflv_1074, appear to be crucial since their mutation to alanine renders the protein inactive. Based on predictions of the bioinformatics programme TMHMM it is likely that these residues are located on the extracytoplasmic face of PrsW placing them in a position to act as a sensor for cell envelope stress.	6.62657e-44
CP016102.1\|AXU45149.1\|621793_622657_+\|copper-amine-oxidase-domain-containing-protein	gnl\|CDD\|379356	pfam13739, DUF4163, Domain of unknown function (DUF4163). The structure of this domain is and alpha-beta-two layer sandwich, identified from a Fervidobacterium nodosum Rt17-B1 like protein. The function is not known except that it is found in association with Heat-shock cognate 70kd protein 44kd ATPase, pfam11738.	2.94213e-18
CP016102.1\|AXU45164.1\|639048_639978_+\|glutaminase	gnl\|CDD\|274797	TIGR03814, Glutaminase_1, glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2). [Energy metabolism, Amino acids and amines].	8.90258e-178
CP016102.1\|AXU45163.1\|636361_638029_+\|phosphoribulokinase/uridine-kinase	gnl\|CDD\|238986	cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).	1.5568e-65
CP016102.1\|AXU45159.1\|632874_634185_+\|methylase	gnl\|CDD\|183387	PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.	1.13717e-75
CP016102.1\|AXU45152.1\|624861_625641_+\|membrane-protein	gnl\|CDD\|283754	pfam06161, DUF975, Protein of unknown function (DUF975). Family of uncharacterized bacterial proteins.	3.75458e-25
CP016102.1\|AXU45160.1\|634284_634821_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	4.81089e-46
CP016102.1\|AXU45162.1\|635532_636288_+\|endonuclease	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	3.30793e-12
CP016102.1\|AXU45146.1\|619772_620213_+\|chemotaxis-protein	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	7.00197e-30

>CP016102.1|AXU45155.1|627813_628224_+|hypothetical-protein
MKIKKSLISAMMVSAMVLGGTGAVFANGNDSSNIALPKLESLIKSGITDPTELEKYGVEHYTYEEYAKHIQELKDYAKDPNAVKDVSQKDLEETIKKMEQELEKIKTEGLKIMKPITIKNEDGSQISIAYNYAAID
>CP016102.1|AXU45154.1|626215_627598_+|penicillin-binding-protein
MFIKLLEMSFTSGVLLLIVIFIRACLFKKLPKKVFVLLWLIVLFKLLIPVSLNSGFSIYSIIESTFDVELGNTSTENYTLKKASDSAGKNNSDEFEIMSSIENIMMLEMLGILSFIVTIMFSILLCFRYFKIINLFKTSIHIKNHEFIKKWMCKNSRFRRFIVCISEFTRTPLTSGILKPRIILPKQMNYANNQTLDFVLTHEMVHINSFDNLLKLFMLVALVVHWFNPLVWVMFFLLNKDIEFSCDEKVMSILGEEYRADYATTLISLAEENNPFSMTICSGFGKTKIEKRIVNIMKFKKSTYVTFLVSTVLVCGTGLVFATENKEINEVESFGLTKNEQSDKIGFSISSKSTDLYSPKLESDILVSKAKSDGETHFSTAKVSVIEFREHEESSTSKVTNSENSEETYVNKSSNSKDVLYTDSGEVSIERSNYNDNRFVISRKGNLLAVNKEQYRTWIE
>CP016102.1|AXU45153.1|625845_626205_+|penicillin-binding-protein-repressor
MEIKLFDSELKVMEVLWERGESKAGELVKILKEETGWNRNTTYTVIKKLVSKGAIERIEPNFVCKALISKEEVQKQETETLINKMFGGSSEKFLSAFINKENLSNDEITKLKQIVEKLK
>CP016102.1|AXU45152.1|624861_625641_+|membrane-protein
MVSRQELKRVSKAQLSGNWGICAISMAVYIALLVLISIVGLPFEPLTTIVVAVIAFCVSAGFTCMFLKITKDEKVKIGDIFVSGRIYLRSFGFYLFESIIVYIYSFIITIIGAFLSFGVLLTSGAIEYLSSDNVGIGTIISTGITLVLIILVLMLPVYILLLYVSQATFLICEDKDNMGVFKSMGASLDMMKGNVLKLFILNFSFIGWYILSIATLGIGLLWLIPYVGVTNCNFYRQLVKENPDVEDILLDKEKSYTMY
>CP016102.1|AXU45151.1|623803_624415_+|lipoprotein
MKMVKKLILSSIMALVLVLTIGCSNAEEKVKSNFEANLAALEMYKYDEKGISDALTEAEYKQIQTYNSKDKVSMIAQLTPLYGKENAEKIYETIVKLIQGVEKTVTVESSSKDKITLKVVSKALDTSKVMSEANTLVKSYVTDEKNYDKKEKEVQDDMTKMIIDLYNKKPTKEVTTMITYTKKDGKWQPPSNIQKLCEGIYTI
>CP016102.1|AXU45150.1|622723_623713_+|ornithine-cyclodeaminase
MLLLKKDDIEKVFTMRDAIEADKEAFRIYCEGKSVNPLRTNISVPSQDASMLFMPGYVEELGCGGIKIVSVFPKNAQKGKPVIPATVLLLDGETGEVSAVLDGTYVTQIRTGAASGAAIDVLAKKDSKIGALIGLGGQGEPQLEAMIEARNLDEVRVFSRNKESREKFAEEMNLKLSKYNTKIVAVESSDKAIDNADVIVLATPSKQPVFNGNLVKKGALISAVGSYMPDMQELCPNCLTRASKIFFESTDAVLSESGDILIPLKEGKISKDDFSGDLGNVINGTIPGREDDDEIIVFKTVGIGVQDVVTAKRIYDKAKENGIGMDWKW
>CP016102.1|AXU45149.1|621793_622657_+|copper-amine-oxidase-domain-containing-protein
MKFFKVDTKARVLRYVFVLTLTIMAVLAIKHDYKYNNLRKDASINLNSNKEAVTVMSNQSLPKGNTNSKQTLSVSTIGSKTIVKNDEYLESTINMPVITNSNKIVERSTNDKIKNDIFEFYNKSYKEAKQYLKDNPDEKNKFVANVDFELKKNTDSALSIKVRYYTYSGGAHGFYQDIAYNVDMRTGKFLELMDLFKDNTKYTEVIDEEIKRQIAELEKKDEENIGIYNFKGIKENQNFYLQDENLVVYFDLYDITPYAAGIPEFSINKALISSMLKPEYVDLFDLK
>CP016102.1|AXU45148.1|621091_621688_+|chemotaxis-like-protein-glutamate-methylesterase
MERFNNMVIAIGASVGGTEAILEIIKDLPKSTPGIVVVQHMPAIFTYMYAQRLDKQCIMNVREAKNNDRVEQGNVLIAPGGYQMKLCTDKQGYYVTCEKGERISGHCPSVDVLFDSVAEVAGKNSIGIILTGMGYDGANGLLKMKENGSFTIGQDENSCIVYGMPMIAFDRGSVMLQLPLGEISNCLIRHINILKQKD
>CP016102.1|AXU45147.1|620248_621052_+|chemotaxis-protein-methyltransferase
MIKLTDEEFIVLVNHVKKEYGIDLSKKRALIEGRLYNTMIEKKLSSFSQYMNLLFKDKTGNEAINLINRLSTNHTFFMREPQHFEFIQNSILPFWEENNKIRNINIWSAGCSSGEEAYSIAMTLDDYFGYNKELWNIKIIATDISTNSLEKAKRGIYIESNVNNVPELWKKKYFIDNKDGTFKICDKIRKSVIFKPFNLMNDFSYQHFDLIFCRNVMIYFDLKTREELINKFYNATKKDSFLFVGHAEVINRSSTKYKYVKPAIYKR
>CP016102.1|AXU45146.1|619772_620213_+|chemotaxis-protein
MAKDEIIKQVLTFYVNDVIYGIELENVIETIRFQSITYVPCLPTYISGVINLRGRIIPVINMHIKYNLPKADYNERTCIIITKVDEYQVGIIVDKVVDVITIENLNLLETTNSNNTNINKDIKEIAKVEDNSILILDIRKFLINSM
>CP016102.1|AXU45156.1|629436_630093_+|membrane-protein
MKKGDFIWSGVLICIIAVLAIPSSREVFMEATGAHPYIGGFLKFAVLATMGDLLGARILYKDWKIPVGVFYRAIVWGIIGVVTTYGMSIYSSGVGQAQVDGMLPFEGIAFANALFKSATMNILMSPTVFLFHKVMDCFIDKKYEVGKGIKVKLKDVVNIVDWNAYLGFSVLKTIPFFWIPCHTIVFLFPAEYRVIASAFASIALGLILALANKSKVAV
>CP016102.1|AXU45157.1|630563_631835_-|spore-peptidoglycan-hydrolase
MQDGFLTVSIIDATNNRPIQNAVVNIYSMSNGSQSSSTLYQNLRSNESGQVTGLVLPAPDVDYSLQPSDVRPYSQYIVEAIADGYETVVIEGTQLLATIEARQGVPMSPRTRSKRSFSRQSELIFDIGEHTLYGTYPPKIPESNLKPLPPPTGFVVLDNPVVPEFIVVHDGLPEDSSAPNYWIPFKEYIKNIASSEIYSTWPEQTIYANVIAIISFTLNRVFTEWYRNKGYNFTITSTTAYDHKFINNRNLFEPINVVVDAIFNTFIKRPPTSRQPLLAQYCDGQKSQCPDQMTQWGSKDLGDQGYDYESILRYFYGDEIVFERAPIVSGVPVSFPGTTLQVGSSGQYVRTIQNQLNAISNSYPAVPKVIEDGIYGTDTENAVKIFQGIFGLPQSGVVDFKTWYEISRVYVATTRIASLNPLI
>CP016102.1|AXU45158.1|632079_632796_+|spore-cortex-lytic-protein
MKLDLFLLAIVPILIGMFWIRSKDRYCREPLIHLIKFFLIGAFLSVIIILLENLLMKFNVFEGYSELIYVSFVVAGLVEEGVKALILIPALIKEKHFTEKLDGIIYSVFLALGFATIENMVYIFSESRNLALQVGINRAVISIPAHVMFAITMGYYISKYKFEGNKNKRREYLFMAVLIPILLHGVFDFILMIEYRWAIILLIVYVIILWKINLDKLEKYMNHSKKVFFGNLRKKKKK
>CP016102.1|AXU45159.1|632874_634185_+|methylase
MTELPKKFLEDIEEILKDEYDDFIKSYEESKTTGLRINTLKIDKKRLFDLELFDLNQIPWAEEGFYYDDKIDRPGRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKILDMCAAPGGKSTYILSKLNDTGLLVSNEINASRIKALGENLERFGARNCIITNTDSNSLRKTFNGYFNKVIIDAPCSGQGMFRKDEVAISDWSYAKVVECQSIQKEIIRDGYKMLKKDGILIYSTCTFSREENEHVINEFISEYPHAELIEMERLWPHKIKGEGHFVAKIKKLEEEECNVKELKIKNLDKEIKDYREFEKKFLKVDFYSNKKNKFYLRGENLYLLPEIYPDTKKLKVLRYGLHLGVLKKNRFEPSHALSHYLKVEDVKNVENFSVQSESILKYLKGDVVNSNDSRGWVLVSVEGIPLGWGKESSGVIKNHYPKGLRKVF
>CP016102.1|AXU45160.1|634284_634821_+|signal-peptidase-I
MGEAVKKEVVEWIKVIVIALVLAFAITRFIVPTIVKGESMYPTLVERDYLIVNRIAYKVGEPKYKDIIVFKTDLTEENGKKKDLVKRVIGVPGDHVKIQDSKVYVNDKLLDETSYIHNNRTDGDIDIVVPEGKLFAMGDNREKSLDSRYDEVGLVDEHTILGKVLVRLYPFSKIGTID
>CP016102.1|AXU45161.1|634986_635523_+|singal-peptidase-I
MNETIKEEIVEWIKIIITALFFAFIITRFIKPTLVNGESMYPTLKSHDYLVANRMTYKLSEPKCGDIMIFKTDLLQENGRKKELVKRVIGVPGDHLKIKDSKVYINGKLLNEVSYIHDNYTEGDIDMVIPKGKVFAMGDNREVSLDSRYKEVGLVDEENIKGKVILRVFPFTDIGIFE
>CP016102.1|AXU45162.1|635532_636288_+|endonuclease
MAVGIASLLFNIEEALNICESIKQITHLEIGIDNISECSELCKYKERISKLGLSIGIHLPMELNTCENIEYIRNSWINFIEKIESELKGFDIRYFNLHLGYVMTNRVRKNRDKYLGNSVDFLDKLNTNSYVCIENTYSKGGDFSNIGNISYDFEYIFKRIKNSKICFCYDTGHCLIDEDAYVKNLKDKIRLIHLSDNDGINDTHVGIGRGILSEEGIKEVLTLDAEYLVLEINYEDIEDTISKLNNIVGEG
>CP016102.1|AXU45163.1|636361_638029_+|phosphoribulokinase/uridine-kinase
MKKINLKIEGKDKEYSLEENSPGIRLGDIAKEFCDEHKGYITLAVVDNKLKELNCRVKKDCEINFLDTTNEDGERVYFRVMSFIFVMACREIFWDSRVTIEHSLSDGLYCEVHIDRKLKEADVENIKNKMKEIVNNDYVIEKIEVTRNEAISIFENNEMYEKAELLKYKEYDSAKVYKCRNYIDHFYGYMLPSTGYIKSFDIKLYNGGVIILGPSEEDKTLPMKFIPQPKLSSVYYEAEEWSRLMGIDKVVSLNKIIENNEYGDIIRTFEALHEKKLSQIADMIKDGNKRVILIAAPSSSGKTSFAHRLSIHLRVNNLNPISISLDDYFIDRKHTPLDEYGNYDFESIYAIDLEKFNLDLKKLLAGEEIDDIRFNFKEGKREYTGKKIKIDSNQPIILEGIHGLNPILTSSIPDEDKFKIYISALTQINLDDHNRIPTADLRMIRRIVRDYNFRGYSADNTILQWASVRRGEKKNIFPYQEEADAIFNSACVYELAVLKRFAKPLLEEIKEDNPAHIEATRLLKFLQYFVELDDTSDIPGISILREFIGGSKIVD
>CP016102.1|AXU45164.1|639048_639978_+|glutaminase
MNTLDETLLKEIISSNKKYTNYGQVASYIPELKNARRNDLGICIIDSENNLYSAGNCSTKFTIQSISKPIVLAMALMDNDWEDVFSNVGMEPSGDPFNSIMKLEINDTKKPCNPMINAGAIVTTSLINGSCLEEKEERMLSFFRKLAKNDNIGINYDVYKSEKMTGDRNRAMAYLLKSDGFIRGNVEDVLDLYFKQCSIEIDSVDLARIGINLANYGVDIENGEHLMSEMVSRIVKTFMMTCGMYDASGEFAIKVGIPAKSGVGGGIMASVPGRMGIGVYGPALDKKGNSVAGVKVLEELSNKLKLNIF
>CP016102.1|AXU45165.1|640075_640639_+|regulatory-protein,-arsr
MKEVLVLRDLECIKAIAHPRRIDILKAFDKSPLSAKQLSQLLEEPHAKINYHIKMLYKVGILELVEEKIKSGIVEKYYYPSAKNVVIGNRILNFSLDNGEEKEELYISKFENMSEVFYKAAEEDVLENENIVDYHDISLTHDELVELSDTMKSKIDEILNKRQHNVEGSKYDIAMVIVPTLEEECPS

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Crispr_ID: CP016102_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_3

798205-798295

Orphan

Consensus_repeat	Method
ATTGATGGTAAAAAATATTACTTTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016102_3

>merge|CP016102|3|798205-798295|CRISPRCasFinder
ATCAATGGTAAAAAATATTATTTTGATATAAATACTGGAGCAGCTTCAACTAGTTATAAAATTATTAATGGTAAACACTTTTATTTTAATA

>CP016102|3|3|798205-798295|CRISPRCasFinder
ATCAATGGTAAAAAATATTATTTTGAT	ATAAATACTGGAGCAGCTTCAACTAGTTATAAAATT
ATTAATGGTAAACACTTTTATTTTAATA

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU45289.1\|802042_802780_-\|lantibiotic-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226663
CP016102.1\|AXU45294.1\|808194_808584_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP016102.1\|AXU45281.1\|783309_783864_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224511
CP016102.1\|AXU45291.1\|803552_804467_-\|lantibiotic-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
CP016102.1\|AXU45283.1\|791419_791920_+\|cell-wall-hydrolase-protein	unknown	unknown	gnl\|CDD\|273708
CP016102.1\|AXU45279.1\|780515_781709_+\|Na(+)/H(+)-antiporter	unknown	unknown	gnl\|CDD\|223104
CP016102.1\|AXU45278.1\|779196_780453_+\|chloride-ion-channel-protein	unknown	unknown	gnl\|CDD\|239654
CP016102.1\|AXU45276.1\|776095_776680_-\|transposase	unknown	unknown	gnl\|CDD\|222853
CP016102.1\|AXU45277.1\|777478_778213_+\|metallo-beta-lactamase-superfamily-protein	unknown	unknown	gnl\|CDD\|293807
CP016102.1\|AXU45285.1\|799282_799981_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372196
CP016102.1\|AXU45292.1\|804637_805345_+\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP016102.1\|AXU45280.1\|781910_782291_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP016102.1\|AXU45287.1\|800860_801130_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378914
CP016102.1\|AXU45288.1\|801261_801564_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU45275.1\|773484_775329_+\|multidrug-ABC-transporter-ATPase-and-permease	unknown	unknown	gnl\|CDD\|224055
CP016102.1\|AXU45282.1\|784194_791298_+\|toxin-B	unknown	unknown	gnl\|CDD\|372383
CP016102.1\|AXU45290.1\|802791_803553_-\|lantibiotic-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378937
CP016102.1\|AXU45284.1\|792028_792160_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU45286.1\|800397_800643_+\|Pathogenicity-locus	unknown	unknown	gnl\|CDD\|371697
CP016102.1\|AXU45293.1\|805389_806796_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU45289.1\|802042_802780_-\|lantibiotic-ABC-transporter-permease	gnl\|CDD\|226663	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown].	4.26192e-27
CP016102.1\|AXU45294.1\|808194_808584_+\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	9.73545e-21
CP016102.1\|AXU45281.1\|783309_783864_+\|transcriptional-regulator	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.82359e-06
CP016102.1\|AXU45291.1\|803552_804467_-\|lantibiotic-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.1402e-90
CP016102.1\|AXU45283.1\|791419_791920_+\|cell-wall-hydrolase-protein	gnl\|CDD\|273708	TIGR01593, Uncharacterized_protein_CPE0383, toxin secretion/phage lysis holin. This model describes one of the many mutally dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species. [Protein fate, Protein and peptide secretion and trafficking, Mobile and extrachromosomal element functions, Prophage functions].	5.64663e-25
CP016102.1\|AXU45279.1\|780515_781709_+\|Na(+)/H(+)-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.15814e-28
CP016102.1\|AXU45278.1\|779196_780453_+\|chloride-ion-channel-protein	gnl\|CDD\|239654	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.	1.51119e-152
CP016102.1\|AXU45276.1\|776095_776680_-\|transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.2879e-50
CP016102.1\|AXU45277.1\|777478_778213_+\|metallo-beta-lactamase-superfamily-protein	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	9.90292e-59
CP016102.1\|AXU45285.1\|799282_799981_-\|hypothetical-protein	gnl\|CDD\|372196	pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homolog of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle.	0.0001343
CP016102.1\|AXU45292.1\|804637_805345_+\|two-component-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.99313e-74
CP016102.1\|AXU45280.1\|781910_782291_+\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	2.82322e-05
CP016102.1\|AXU45287.1\|800860_801130_-\|hypothetical-protein	gnl\|CDD\|378914	pfam12675, DUF3795, Protein of unknown function (DUF3795). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 99 and 171 amino acids in length. This protein is likely to be zinc binding given the conserved cysteines.	1.72307e-09
CP016102.1\|AXU45275.1\|773484_775329_+\|multidrug-ABC-transporter-ATPase-and-permease	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.80459e-132
CP016102.1\|AXU45282.1\|784194_791298_+\|toxin-B	gnl\|CDD\|372383	pfam12920, TcdA_TcdB_pore, TcdA/TcdB pore forming domain. This family represents the most conserved region within the C. difficile Toxin A and Toxin B pore forming region.	0
CP016102.1\|AXU45290.1\|802791_803553_-\|lantibiotic-ABC-transporter-permease	gnl\|CDD\|378937	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.34887e-13
CP016102.1\|AXU45286.1\|800397_800643_+\|Pathogenicity-locus	gnl\|CDD\|371697	pfam11731, Cdd1, Pathogenicity locus. Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.	8.62571e-29
CP016102.1\|AXU45293.1\|805389_806796_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.91441e-31

>CP016102.1|AXU45284.1|792028_792160_+|hypothetical-protein
MPRDTQVLNTYNFEASVHYYMDDKVVYQTLVHKDGAWSVGKIY
>CP016102.1|AXU45283.1|791419_791920_+|cell-wall-hydrolase-protein
MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKNMCLCGLPVPKRLKEKIAVLLDAMTDEMNAKDEK
>CP016102.1|AXU45282.1|784194_791298_+|toxin-B
MSLVNRKQLEKMANVRFRVQEDEYVAILDALEEYHNMSENTVVEKYLKLKDINSLTDTYIDTYKKSGRNKALKKFKEYLVIEILELKNSNLTPVEKNLHFIWIGGQINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTLKKTIIESASNDTLESFRENLNDPEFNHTAFFRKRMQIIYDKQQNFINYYKAQKEENPDLIIDDIVKTYLSNEYSKDIDELNAYIEESLNKVTENSGNDVRNFEEFKTGEVFNLYEQELVERWNLAGASDILRVAILKNIGGVYLDVDMLPGIHPDLFKDINKPDSVKTAVDWEEMQLEAIMKHKEYIPEYTSKHFDTLDEEVQSSFESVLASKSDKSEIFLPLGDIEVSPLEVKIAFAKGSIINQALISAKDSYCSDLLIKQIQNRYKILNDTLGPIISQGNDFNTTMNNFGESLGAIANEENISFIAKIGSYLRVGFYPEANTTITLSGPTIYAGAYKDLLTFKEMSIDTSILSSELRNFEFPKVNISQATEQEKNSLWQFNEERAKIQFEEYKKNYFEGALGEDDNLDFSQNTVTDKEYLLEKISSSTKSSERGYVHYIVQLQGDKISYEAACNLFAKNPYDSILFQKNIEDSEVAYYYNPTDSEIQEIDKYRIPDRISDRPKIKLTFIGHGKAEFNTDIFAGLDVDSLSSEIETAIGLAKEDISPKSIEINLLGCNMFSYSVNVEETYPGKLLLRVKDKVSELMPSMSQDSIIVSANQYEVRINSEGRRELLDHSGEWINKEESIIKDISSKEYISFNPKENKIIVKSKNLPELSTLLQEIRNNSNSSDIELEEKVMLAECEINVISNIETQVVEERIEEAKSLTSDSINYIKNEFKLIESISDALCDLKQQNELEDSHFISFEDISETDEGFSIRFINKETGESIFVETEKTIFSEYANHITEEISKIKGTIFDTVNGKLVKKVNLDTTHEVNTLNAAFFIQSLIEYNSSKESLSNLSVAMKVQVYAQLFSTGLNTITDAAKVVELVSTALDETIDLLPTLSEGLPIIATIIDGVSLGAAIKELSETSDPLLRQEIEAKIGIMAVNLTTATTAIITSSLGIASGFSILLVPLAGISAGIPSLVNNELVLRDKATKVVDYFKHVSLVETEGVFTLLDDKVMMPQDDLVISEIDFNNNSIVLGKCEIWRMEGGSGHTVTDDIDHFFSAPSITYREPHLSIYDVLEVQKEELDLSKDLMVLPNAPNRVFAWETGWTPGLRSLENDGTKLLDRIRDNYEGEFYWRYFAFIADALITTLKPRYEDTNIRINLDSNTRSFIVPIITTEYIREKLSYSFYGSGGTYALSLSQYNMGINIELSESDVWIIDVDNVVRDVTIESDKIKKGDLIEGILSTLSIEENKIILNSHEINFSGEVNGSNGFVSLTFSILEGINAIIEVDLLSKSYKLLISGELKILMLNSNHIQQKIDYIGFNSELQKNIPYSFVDSEGKENGFINGSTKEGLFVSELPDVVLISKVYMDDSKPSFGYYSNNLKDVKVITKDNVNILTGYYLKDDIKISLSLTLQDEKTIKLNSVHLDESGVAEILKFMNRKGSTNTSDSLMSFLESMNIKSIFVNFLQSNIKFILDANFIISGTTSIGQFEFICDENNNIQPYFIKFNTLETNYTLYVGNRQNMIVEPNYDLDDSGDISSTVINFSQKYLYGIDSCVNKVVISPNIYTDEINITPVYETNNTYPEVIVLDANYINEKINVNINDLSIRYVWSNDGNDFILMSTSEENKVSQVKIRFVNVFKDKTLANKLSFNFSDKQDVPVSEIILSFTPSYYEDGLIGYDLGLVSLYNEKFYINNFGMMVSGLIYINDSLYYFKPPVNNLITGFVTVGDDKYYFNPINGGAASIGETIIDDKNYYFNQSGVLQTGVFSTEDGFKYFAPANTLDENLEGEAIDFTGKLIIDENIYYFEDNYRGAVEWKELDGEMHYFSPETGKAFKGLNQIGDDKYYFNSDGVMQKGFVSINDNKHYFDDSGVMKVGYTEIDGKHFYFAENGEMQIGVFNTEDGFKYFAHHNEDLGNEEGEEISYSGILNFNNKIYYFDDSFTAVVGWKDLEDGSKYYFDEDTAEAYIGLSLINDGQYYFNDDGIMQVGFVTINDKVFYFSDSGIIESGVQNIDDNYFYIDDNGIVQIGVFDTSDGYKYFAPANTVNDNIYGQAVEYSGLVRVGEDVYYFGETYTIETGWIYDMENESDKYYFDPETKKACKGINLIDDIKYYFDEKGIMRTGLISFENNNYYFNENGEMQFGYINIEDKMFYFGEDGVMQIGVFNTPDGFKYFAHQNTLDENFEGESINYTGWLDLDEKRYYFTDEYIAATGSVIIDGEEYYFDPDTAQLVISE
>CP016102.1|AXU45281.1|783309_783864_+|transcriptional-regulator
MQKSFYELIALVRNNSVDDLQEILFMFKPLIKKLSRVLHYEEGETDLIIFFIELIKNIKLSSFAEKSDAIIVKYIHKSLLNKTFELSRRYSKMKFNFVEFDENVLNMKNNYQSKSVFEEDICFFEYILKELSGIQRKVILYKYLKGYSDREISVKLKISRQAVNKAKNRAFKKIKKDYENYFNL
>CP016102.1|AXU45280.1|781910_782291_+|regulatory-protein
MYLKKLSKLELVIMKFIWNLDIKTNSYEIIDYMKEEHNLPEKVALKTLSKLSKKRLLYVQETDKCMYYTVAIKERAYLEFISRNVQNLLKNNFIRNLLVSFHEEELTEEKIKSLENWVVNWEEAYI
>CP016102.1|AXU45279.1|780515_781709_+|Na(+)/H(+)-antiporter
MLTSLALIFLLGMASGGIFKKIKLPSLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLMEEGYGIEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAISFLQIPVSIILGVIAGAVIGLCLAVFFKNVHMRDSAKGVLLLSISFLMISLETTLEGIVPFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAVILIFGVLLFRIVGVFFCLIKTNLTIKERLFCMIGYIPKATVQAAIGGVPLAMGMVSGQLILTLAVLAILITAPLGAFGIDVTYKKLLTSVKGESK
>CP016102.1|AXU45278.1|779196_780453_+|chloride-ion-channel-protein
MIEKFKTLIWIKMIIRIKIVYKTYGGLFLLGLIGIPVGAIIGLIDTIFGTVLLKVTDIRETYPMYLIPFLAVVGVVIAYCYFKFGGKSSKGMNLIFEVGHGEEEIIPLRLVPFIISGTWLTHLFGGSAGREGVAVQIGATFSHWVGKRLPIKNASSIFLVTGMAAGFAGLFETPIAAILFAMEVLVAGSLEYQSLFPAFTASFTASAVSKALGLEKFYFTLSSKVVFDLSIFWKLIVLGIIFGMVGGAFAWCLKLAKRKIGNRLKNPMIRIAIIGVCLSVLFLLFYKGRYSGLGTNLIQNSFYGGEIYSFDWLLKFILTILTLSAGFQGGEVTPLFSIGASLGVLLAGFFNLPIELVAALGYASVFGSATNTFFAPVFIGAEVFGYSYLPYFFVVCAISYIFNMDKSIYSLQKISTKQ
>CP016102.1|AXU45277.1|777478_778213_+|metallo-beta-lactamase-superfamily-protein
MNLTKGLDVLKISSNVLGEDKVMYIPVIYTEDEATLIDTGLPGQGDLIIDALNKSNTSFDKLKNIIITHHDIDHIGNINYLREKSKNSIKVYAYKSEVSYITGEETPFKLCMLEQMVDKIDDKMLSMLNVMGLGFKSSYTKVDVSLDNHEILNLGEKMEVIHTGGHTRGHICLYLKESKILIAGDLLQIENGELKPVDVMHSNKQELKDAIKNISNYDIETIVFSHGGLYQKNIIETLKNLIIE
>CP016102.1|AXU45276.1|776095_776680_-|transposase
MKELGIKSIIRKKVYRRKFKSYEIYDNILNRKFRANQPLEKICMDITYIPIGKKFLYMNVAKDLFNGEIVAYEISTKMDTKLVNNTVNQLINMNLAKDCILHTDQGSQYTSRSYSKRLKDNGIIQSMSRRGNCWDNAPIESFFSHFKSELIYLIDTTDPKKMISLINDYIYFYNNERIQLKNGMSPIEYRTHCA
>CP016102.1|AXU45275.1|773484_775329_+|multidrug-ABC-transporter-ATPase-and-permease
MKKKCSKNKKIENRNNKNKSLKRFAFLTFKKNKGKLLLSFIMVIIVAVVDLVQPQVTRMIVDEGIGTKDANLLLKLMFIYGAAGVSSAILYLLLSYLYSAIKKNVTVDIKIKLLNHLSKLSGKYYSNIKTGNIISIIESDIFIIENFGAELAFSILVNIFTASMALFFLVRMQVDLFLIVLILQIILSIFQNKFTKLISKNTREIREDSGSLSNKIQEYVSNIKNVVVSKSRMKFFSSYLSEEKNLIRKYLKLDLIMNGNIAIAKSISILVTVSIYGVGGYKIISGNMTIGELLAFQQYTNMFIGPCISIVRANTRIQQAKASLDRVYSVIDEEIDIKVNNRGLRIEDKECNIIEFKNIYFSYKEIGKKKLQNLEQDEQIDCTYEDIETDSYILSNINITFRKGETTALIGESGSGKSTIVNLLYRLWDIQKGEITIDGINIKNINLKSLRKSINIVTQDMLMFDDTIRNNININKSLSDEELKNICSVVGMNDFISRLENGFDTIIGEKGVKISGGQKQRIALARSLVNDSKILILDEATSALDNISQSEILRNIRAYVKGKIVIIIAHRLSTIKDADNIYVLEKGKVVESGKDKELFIRNGIYRKLVTLNTQ
>CP016102.1|AXU45285.1|799282_799981_-|hypothetical-protein
MFSKKNEGNEFSNEGKGSSKKIIKFFKSTKGIALLVFILGVFFGNISSPACSEDHEKVISNQTSVIDSQKTEIETLNSKLSDAEPWFKMKDDEKKAIEAENQRKAEEAKKAEEAKKAEEQRKKEEEEKKGYDTGITYDQLARTPDDYKYKKVKFEGKVIQVIEDGDEVQIRLAVSGNYDKVVLCSYKKSITPSRVLEDDYITIRGISAGTITYESTMGGNITIPGIAVEKIN
>CP016102.1|AXU45286.1|800397_800643_+|Pathogenicity-locus
MGELQKIPGVGKATEKSLIMLGYTTIKSLKDANPAQMYEKECLMRGQHIDRCQLYVYRCAVYFASTENPEPEKLKWWYWKD
>CP016102.1|AXU45287.1|800860_801130_-|hypothetical-protein
MFESRCGVCCDSCTKKEQVNCTGCPTMEKPFWGGECKVKTCCESKELNHCGECDTFPCDMLLNKGKDQGFDPMVNIEQCRKWLEETVSN
>CP016102.1|AXU45288.1|801261_801564_-|hypothetical-protein
MEYSKGFKVIYSLVEYSKRFKVIYCVMEYSKRFKVIYCVMEYLKGFKVIYGVMEYSKRFKAIYDVMEYSKRFKSIYSFTKYSNGFEVIYCALKYSKIFLE
>CP016102.1|AXU45289.1|802042_802780_-|lantibiotic-ABC-transporter-permease
MLRKSVLGEILKLKNSFIWYVLLALPLISVLIGSGNFYLNQGILKKEWYSLWTQVSLFYGEFFFPILISIFCAYICRLEHMNHNWNNVMTLPVKLKNIFLSKLTVVSILTAITQVFFVIFYIVAGNMFGFSGSVPKELTGWIAKGWIISISIASIQLYMSIKIRSFATPIGISLCLSLFGMGLIVAKPAVGIFFPYSMLGSAMGVIKQSALNVNDTIVTICVAFITTILFSEIANRNFRKNDVIS
>CP016102.1|AXU45290.1|802791_803553_-|lantibiotic-ABC-transporter-permease
MKYLGLEFYKLKRKKIILMTFLFVAVEIMWCIVNSNRAITRNPDMLGGFEYSYMLMSFASLNGLFFPILISIITSRISDIEHKGDTWKLLKSSVTSLNSIYSSKFLCSAILVSVAVLMQVLSIVLFGHFRGVIESISVFSLLKYTLGTILVSIAIIALHLWIATVIPNQMVAITFGMIGSFIGLTSGLFYQGIRRLFIWSYYLELSPLSYAYDNVLGSSVYRIDMNFSITILVFLIGMLIYYIGRNHLLKKEV
>CP016102.1|AXU45291.1|803552_804467_-|lantibiotic-ABC-transporter-ATP-binding-protein
MEMIIRTQRLSKEYNKIFRVKDIDLRVPKGAVYGFLGPNGAGKSTTLKMLLGLAKPTQGNINILGKELNEKNRISILKDIGSLIESPSYYGHLTGLENMTIMQRLLDLPKKNVNEALKIVRLENQKNKKVSQYSLGMKQRLGIAMAIMKFPKLLILDEPTNGLDPAGIEEIRELIKSLPEKYGMTVLISSHLLSEIDQIATSIGIINHGELVFQDSIKELHNRGQSQIAIKTKNVVSAQKLLNTKGYMSLIQDGYLTIENLKDSDVAKINGMLVHSNIDVFRIEEHKKSLEDIFLELTGKAVTL
>CP016102.1|AXU45292.1|804637_805345_+|two-component-response-regulator
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFKNVKPDCAILDVVLPDGDGFSIMRKIRETSKIPVIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEISLTAKEHSLLLKLYENKGRIVTSDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPRHLLTVRGLGYKLMIN
>CP016102.1|AXU45293.1|805389_806796_+|two-component-sensor-histidine-kinase
MDSVKYILRRFIGSSILISLLFIVLNIAGFLLFSYMLFVSKYSDNLDTSDSREIKSNLIMIEDNLILKDGKFILDDSSKEVLHKNKVWAMLIDNNGDRVWGFDLPKEIPSHYTLTDVAKFSRFFLKDYPVYVWEHPNGILVTGYPKDKYTKFNLTYTIKEIEQFPMLIIGMFLVNAIVTFLIALFIGLKMVKSIKPIITGIKLMSKGEPVLLQEKGILSDISKSINTVSKELQMKDEKLRKKEEARSNWIAGISHDIRTPLSMIIGYAGELEESSSLSNREQEQVSIICNQGVKIRELVNDLNLVSKLEYNMQALNCDKIRVSAFLRELVSEFINNSLDNDFYIELDILNEDIIIDADKKLLKRAISNLIQNSITHNQQGCNIRVTSKSDLDFCYIIVEDDGKGMSQEKINSLLKSQNGLSEAYAKGQNHGLGILIVSGIINAHRGKLDITSIDSQGLKIILKLPLIK
>CP016102.1|AXU45294.1|808194_808584_+|regulatory-protein
MTIKKLPQSELKIMKFIWKSDSKVTSRDIVLGMEQKYQWKQTTTLTLLSRLVVKRFLNSQKIDKYTHYEVLIKEKEYIGVETRDFFRNIHDSSIKSLLLSLHENINLSKDDILLIEEWIKNLKEEEKDV

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Crispr_ID: CP016102_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_5

798820-798912

Orphan

Consensus_repeat	Method
ATTGATGGTAAAAAATATTACTTTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016102_5

>merge|CP016102|5|798820-798912|CRISPRCasFinder
ATTAATGGTAATGTATATTACTTTATGCCTGATACTGCTATGGCTGCAGCTGGTGGACTTTTCGAGATTGATGGTGTTATATATTTCTTTGGT

>CP016102|5|5|798820-798912|CRISPRCasFinder
ATTAATGGTAATGTATATTACTTTATG	CCTGATACTGCTATGGCTGCAGCTGGTGGACTTTTCGAG
ATTGATGGTGTTATATATTTCTTTGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU45289.1\|802042_802780_-\|lantibiotic-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226663
CP016102.1\|AXU45294.1\|808194_808584_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP016102.1\|AXU45281.1\|783309_783864_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224511
CP016102.1\|AXU45291.1\|803552_804467_-\|lantibiotic-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
CP016102.1\|AXU45283.1\|791419_791920_+\|cell-wall-hydrolase-protein	unknown	unknown	gnl\|CDD\|273708
CP016102.1\|AXU45279.1\|780515_781709_+\|Na(+)/H(+)-antiporter	unknown	unknown	gnl\|CDD\|223104
CP016102.1\|AXU45278.1\|779196_780453_+\|chloride-ion-channel-protein	unknown	unknown	gnl\|CDD\|239654
CP016102.1\|AXU45276.1\|776095_776680_-\|transposase	unknown	unknown	gnl\|CDD\|222853
CP016102.1\|AXU45277.1\|777478_778213_+\|metallo-beta-lactamase-superfamily-protein	unknown	unknown	gnl\|CDD\|293807
CP016102.1\|AXU45285.1\|799282_799981_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372196
CP016102.1\|AXU45292.1\|804637_805345_+\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP016102.1\|AXU45280.1\|781910_782291_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP016102.1\|AXU45287.1\|800860_801130_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378914
CP016102.1\|AXU45288.1\|801261_801564_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU45275.1\|773484_775329_+\|multidrug-ABC-transporter-ATPase-and-permease	unknown	unknown	gnl\|CDD\|224055
CP016102.1\|AXU45282.1\|784194_791298_+\|toxin-B	unknown	unknown	gnl\|CDD\|372383
CP016102.1\|AXU45290.1\|802791_803553_-\|lantibiotic-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378937
CP016102.1\|AXU45284.1\|792028_792160_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU45286.1\|800397_800643_+\|Pathogenicity-locus	unknown	unknown	gnl\|CDD\|371697
CP016102.1\|AXU45293.1\|805389_806796_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU45289.1\|802042_802780_-\|lantibiotic-ABC-transporter-permease	gnl\|CDD\|226663	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown].	4.26192e-27
CP016102.1\|AXU45294.1\|808194_808584_+\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	9.73545e-21
CP016102.1\|AXU45281.1\|783309_783864_+\|transcriptional-regulator	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.82359e-06
CP016102.1\|AXU45291.1\|803552_804467_-\|lantibiotic-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.1402e-90
CP016102.1\|AXU45283.1\|791419_791920_+\|cell-wall-hydrolase-protein	gnl\|CDD\|273708	TIGR01593, Uncharacterized_protein_CPE0383, toxin secretion/phage lysis holin. This model describes one of the many mutally dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species. [Protein fate, Protein and peptide secretion and trafficking, Mobile and extrachromosomal element functions, Prophage functions].	5.64663e-25
CP016102.1\|AXU45279.1\|780515_781709_+\|Na(+)/H(+)-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.15814e-28
CP016102.1\|AXU45278.1\|779196_780453_+\|chloride-ion-channel-protein	gnl\|CDD\|239654	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.	1.51119e-152
CP016102.1\|AXU45276.1\|776095_776680_-\|transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.2879e-50
CP016102.1\|AXU45277.1\|777478_778213_+\|metallo-beta-lactamase-superfamily-protein	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	9.90292e-59
CP016102.1\|AXU45285.1\|799282_799981_-\|hypothetical-protein	gnl\|CDD\|372196	pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homolog of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle.	0.0001343
CP016102.1\|AXU45292.1\|804637_805345_+\|two-component-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.99313e-74
CP016102.1\|AXU45280.1\|781910_782291_+\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	2.82322e-05
CP016102.1\|AXU45287.1\|800860_801130_-\|hypothetical-protein	gnl\|CDD\|378914	pfam12675, DUF3795, Protein of unknown function (DUF3795). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 99 and 171 amino acids in length. This protein is likely to be zinc binding given the conserved cysteines.	1.72307e-09
CP016102.1\|AXU45275.1\|773484_775329_+\|multidrug-ABC-transporter-ATPase-and-permease	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.80459e-132
CP016102.1\|AXU45282.1\|784194_791298_+\|toxin-B	gnl\|CDD\|372383	pfam12920, TcdA_TcdB_pore, TcdA/TcdB pore forming domain. This family represents the most conserved region within the C. difficile Toxin A and Toxin B pore forming region.	0
CP016102.1\|AXU45290.1\|802791_803553_-\|lantibiotic-ABC-transporter-permease	gnl\|CDD\|378937	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.34887e-13
CP016102.1\|AXU45286.1\|800397_800643_+\|Pathogenicity-locus	gnl\|CDD\|371697	pfam11731, Cdd1, Pathogenicity locus. Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.	8.62571e-29
CP016102.1\|AXU45293.1\|805389_806796_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.91441e-31

>CP016102.1|AXU45284.1|792028_792160_+|hypothetical-protein
MPRDTQVLNTYNFEASVHYYMDDKVVYQTLVHKDGAWSVGKIY
>CP016102.1|AXU45283.1|791419_791920_+|cell-wall-hydrolase-protein
MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKNMCLCGLPVPKRLKEKIAVLLDAMTDEMNAKDEK
>CP016102.1|AXU45282.1|784194_791298_+|toxin-B
MSLVNRKQLEKMANVRFRVQEDEYVAILDALEEYHNMSENTVVEKYLKLKDINSLTDTYIDTYKKSGRNKALKKFKEYLVIEILELKNSNLTPVEKNLHFIWIGGQINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTLKKTIIESASNDTLESFRENLNDPEFNHTAFFRKRMQIIYDKQQNFINYYKAQKEENPDLIIDDIVKTYLSNEYSKDIDELNAYIEESLNKVTENSGNDVRNFEEFKTGEVFNLYEQELVERWNLAGASDILRVAILKNIGGVYLDVDMLPGIHPDLFKDINKPDSVKTAVDWEEMQLEAIMKHKEYIPEYTSKHFDTLDEEVQSSFESVLASKSDKSEIFLPLGDIEVSPLEVKIAFAKGSIINQALISAKDSYCSDLLIKQIQNRYKILNDTLGPIISQGNDFNTTMNNFGESLGAIANEENISFIAKIGSYLRVGFYPEANTTITLSGPTIYAGAYKDLLTFKEMSIDTSILSSELRNFEFPKVNISQATEQEKNSLWQFNEERAKIQFEEYKKNYFEGALGEDDNLDFSQNTVTDKEYLLEKISSSTKSSERGYVHYIVQLQGDKISYEAACNLFAKNPYDSILFQKNIEDSEVAYYYNPTDSEIQEIDKYRIPDRISDRPKIKLTFIGHGKAEFNTDIFAGLDVDSLSSEIETAIGLAKEDISPKSIEINLLGCNMFSYSVNVEETYPGKLLLRVKDKVSELMPSMSQDSIIVSANQYEVRINSEGRRELLDHSGEWINKEESIIKDISSKEYISFNPKENKIIVKSKNLPELSTLLQEIRNNSNSSDIELEEKVMLAECEINVISNIETQVVEERIEEAKSLTSDSINYIKNEFKLIESISDALCDLKQQNELEDSHFISFEDISETDEGFSIRFINKETGESIFVETEKTIFSEYANHITEEISKIKGTIFDTVNGKLVKKVNLDTTHEVNTLNAAFFIQSLIEYNSSKESLSNLSVAMKVQVYAQLFSTGLNTITDAAKVVELVSTALDETIDLLPTLSEGLPIIATIIDGVSLGAAIKELSETSDPLLRQEIEAKIGIMAVNLTTATTAIITSSLGIASGFSILLVPLAGISAGIPSLVNNELVLRDKATKVVDYFKHVSLVETEGVFTLLDDKVMMPQDDLVISEIDFNNNSIVLGKCEIWRMEGGSGHTVTDDIDHFFSAPSITYREPHLSIYDVLEVQKEELDLSKDLMVLPNAPNRVFAWETGWTPGLRSLENDGTKLLDRIRDNYEGEFYWRYFAFIADALITTLKPRYEDTNIRINLDSNTRSFIVPIITTEYIREKLSYSFYGSGGTYALSLSQYNMGINIELSESDVWIIDVDNVVRDVTIESDKIKKGDLIEGILSTLSIEENKIILNSHEINFSGEVNGSNGFVSLTFSILEGINAIIEVDLLSKSYKLLISGELKILMLNSNHIQQKIDYIGFNSELQKNIPYSFVDSEGKENGFINGSTKEGLFVSELPDVVLISKVYMDDSKPSFGYYSNNLKDVKVITKDNVNILTGYYLKDDIKISLSLTLQDEKTIKLNSVHLDESGVAEILKFMNRKGSTNTSDSLMSFLESMNIKSIFVNFLQSNIKFILDANFIISGTTSIGQFEFICDENNNIQPYFIKFNTLETNYTLYVGNRQNMIVEPNYDLDDSGDISSTVINFSQKYLYGIDSCVNKVVISPNIYTDEINITPVYETNNTYPEVIVLDANYINEKINVNINDLSIRYVWSNDGNDFILMSTSEENKVSQVKIRFVNVFKDKTLANKLSFNFSDKQDVPVSEIILSFTPSYYEDGLIGYDLGLVSLYNEKFYINNFGMMVSGLIYINDSLYYFKPPVNNLITGFVTVGDDKYYFNPINGGAASIGETIIDDKNYYFNQSGVLQTGVFSTEDGFKYFAPANTLDENLEGEAIDFTGKLIIDENIYYFEDNYRGAVEWKELDGEMHYFSPETGKAFKGLNQIGDDKYYFNSDGVMQKGFVSINDNKHYFDDSGVMKVGYTEIDGKHFYFAENGEMQIGVFNTEDGFKYFAHHNEDLGNEEGEEISYSGILNFNNKIYYFDDSFTAVVGWKDLEDGSKYYFDEDTAEAYIGLSLINDGQYYFNDDGIMQVGFVTINDKVFYFSDSGIIESGVQNIDDNYFYIDDNGIVQIGVFDTSDGYKYFAPANTVNDNIYGQAVEYSGLVRVGEDVYYFGETYTIETGWIYDMENESDKYYFDPETKKACKGINLIDDIKYYFDEKGIMRTGLISFENNNYYFNENGEMQFGYINIEDKMFYFGEDGVMQIGVFNTPDGFKYFAHQNTLDENFEGESINYTGWLDLDEKRYYFTDEYIAATGSVIIDGEEYYFDPDTAQLVISE
>CP016102.1|AXU45281.1|783309_783864_+|transcriptional-regulator
MQKSFYELIALVRNNSVDDLQEILFMFKPLIKKLSRVLHYEEGETDLIIFFIELIKNIKLSSFAEKSDAIIVKYIHKSLLNKTFELSRRYSKMKFNFVEFDENVLNMKNNYQSKSVFEEDICFFEYILKELSGIQRKVILYKYLKGYSDREISVKLKISRQAVNKAKNRAFKKIKKDYENYFNL
>CP016102.1|AXU45280.1|781910_782291_+|regulatory-protein
MYLKKLSKLELVIMKFIWNLDIKTNSYEIIDYMKEEHNLPEKVALKTLSKLSKKRLLYVQETDKCMYYTVAIKERAYLEFISRNVQNLLKNNFIRNLLVSFHEEELTEEKIKSLENWVVNWEEAYI
>CP016102.1|AXU45279.1|780515_781709_+|Na(+)/H(+)-antiporter
MLTSLALIFLLGMASGGIFKKIKLPSLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLMEEGYGIEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAISFLQIPVSIILGVIAGAVIGLCLAVFFKNVHMRDSAKGVLLLSISFLMISLETTLEGIVPFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAVILIFGVLLFRIVGVFFCLIKTNLTIKERLFCMIGYIPKATVQAAIGGVPLAMGMVSGQLILTLAVLAILITAPLGAFGIDVTYKKLLTSVKGESK
>CP016102.1|AXU45278.1|779196_780453_+|chloride-ion-channel-protein
MIEKFKTLIWIKMIIRIKIVYKTYGGLFLLGLIGIPVGAIIGLIDTIFGTVLLKVTDIRETYPMYLIPFLAVVGVVIAYCYFKFGGKSSKGMNLIFEVGHGEEEIIPLRLVPFIISGTWLTHLFGGSAGREGVAVQIGATFSHWVGKRLPIKNASSIFLVTGMAAGFAGLFETPIAAILFAMEVLVAGSLEYQSLFPAFTASFTASAVSKALGLEKFYFTLSSKVVFDLSIFWKLIVLGIIFGMVGGAFAWCLKLAKRKIGNRLKNPMIRIAIIGVCLSVLFLLFYKGRYSGLGTNLIQNSFYGGEIYSFDWLLKFILTILTLSAGFQGGEVTPLFSIGASLGVLLAGFFNLPIELVAALGYASVFGSATNTFFAPVFIGAEVFGYSYLPYFFVVCAISYIFNMDKSIYSLQKISTKQ
>CP016102.1|AXU45277.1|777478_778213_+|metallo-beta-lactamase-superfamily-protein
MNLTKGLDVLKISSNVLGEDKVMYIPVIYTEDEATLIDTGLPGQGDLIIDALNKSNTSFDKLKNIIITHHDIDHIGNINYLREKSKNSIKVYAYKSEVSYITGEETPFKLCMLEQMVDKIDDKMLSMLNVMGLGFKSSYTKVDVSLDNHEILNLGEKMEVIHTGGHTRGHICLYLKESKILIAGDLLQIENGELKPVDVMHSNKQELKDAIKNISNYDIETIVFSHGGLYQKNIIETLKNLIIE
>CP016102.1|AXU45276.1|776095_776680_-|transposase
MKELGIKSIIRKKVYRRKFKSYEIYDNILNRKFRANQPLEKICMDITYIPIGKKFLYMNVAKDLFNGEIVAYEISTKMDTKLVNNTVNQLINMNLAKDCILHTDQGSQYTSRSYSKRLKDNGIIQSMSRRGNCWDNAPIESFFSHFKSELIYLIDTTDPKKMISLINDYIYFYNNERIQLKNGMSPIEYRTHCA
>CP016102.1|AXU45275.1|773484_775329_+|multidrug-ABC-transporter-ATPase-and-permease
MKKKCSKNKKIENRNNKNKSLKRFAFLTFKKNKGKLLLSFIMVIIVAVVDLVQPQVTRMIVDEGIGTKDANLLLKLMFIYGAAGVSSAILYLLLSYLYSAIKKNVTVDIKIKLLNHLSKLSGKYYSNIKTGNIISIIESDIFIIENFGAELAFSILVNIFTASMALFFLVRMQVDLFLIVLILQIILSIFQNKFTKLISKNTREIREDSGSLSNKIQEYVSNIKNVVVSKSRMKFFSSYLSEEKNLIRKYLKLDLIMNGNIAIAKSISILVTVSIYGVGGYKIISGNMTIGELLAFQQYTNMFIGPCISIVRANTRIQQAKASLDRVYSVIDEEIDIKVNNRGLRIEDKECNIIEFKNIYFSYKEIGKKKLQNLEQDEQIDCTYEDIETDSYILSNINITFRKGETTALIGESGSGKSTIVNLLYRLWDIQKGEITIDGINIKNINLKSLRKSINIVTQDMLMFDDTIRNNININKSLSDEELKNICSVVGMNDFISRLENGFDTIIGEKGVKISGGQKQRIALARSLVNDSKILILDEATSALDNISQSEILRNIRAYVKGKIVIIIAHRLSTIKDADNIYVLEKGKVVESGKDKELFIRNGIYRKLVTLNTQ
>CP016102.1|AXU45285.1|799282_799981_-|hypothetical-protein
MFSKKNEGNEFSNEGKGSSKKIIKFFKSTKGIALLVFILGVFFGNISSPACSEDHEKVISNQTSVIDSQKTEIETLNSKLSDAEPWFKMKDDEKKAIEAENQRKAEEAKKAEEAKKAEEQRKKEEEEKKGYDTGITYDQLARTPDDYKYKKVKFEGKVIQVIEDGDEVQIRLAVSGNYDKVVLCSYKKSITPSRVLEDDYITIRGISAGTITYESTMGGNITIPGIAVEKIN
>CP016102.1|AXU45286.1|800397_800643_+|Pathogenicity-locus
MGELQKIPGVGKATEKSLIMLGYTTIKSLKDANPAQMYEKECLMRGQHIDRCQLYVYRCAVYFASTENPEPEKLKWWYWKD
>CP016102.1|AXU45287.1|800860_801130_-|hypothetical-protein
MFESRCGVCCDSCTKKEQVNCTGCPTMEKPFWGGECKVKTCCESKELNHCGECDTFPCDMLLNKGKDQGFDPMVNIEQCRKWLEETVSN
>CP016102.1|AXU45288.1|801261_801564_-|hypothetical-protein
MEYSKGFKVIYSLVEYSKRFKVIYCVMEYSKRFKVIYCVMEYLKGFKVIYGVMEYSKRFKAIYDVMEYSKRFKSIYSFTKYSNGFEVIYCALKYSKIFLE
>CP016102.1|AXU45289.1|802042_802780_-|lantibiotic-ABC-transporter-permease
MLRKSVLGEILKLKNSFIWYVLLALPLISVLIGSGNFYLNQGILKKEWYSLWTQVSLFYGEFFFPILISIFCAYICRLEHMNHNWNNVMTLPVKLKNIFLSKLTVVSILTAITQVFFVIFYIVAGNMFGFSGSVPKELTGWIAKGWIISISIASIQLYMSIKIRSFATPIGISLCLSLFGMGLIVAKPAVGIFFPYSMLGSAMGVIKQSALNVNDTIVTICVAFITTILFSEIANRNFRKNDVIS
>CP016102.1|AXU45290.1|802791_803553_-|lantibiotic-ABC-transporter-permease
MKYLGLEFYKLKRKKIILMTFLFVAVEIMWCIVNSNRAITRNPDMLGGFEYSYMLMSFASLNGLFFPILISIITSRISDIEHKGDTWKLLKSSVTSLNSIYSSKFLCSAILVSVAVLMQVLSIVLFGHFRGVIESISVFSLLKYTLGTILVSIAIIALHLWIATVIPNQMVAITFGMIGSFIGLTSGLFYQGIRRLFIWSYYLELSPLSYAYDNVLGSSVYRIDMNFSITILVFLIGMLIYYIGRNHLLKKEV
>CP016102.1|AXU45291.1|803552_804467_-|lantibiotic-ABC-transporter-ATP-binding-protein
MEMIIRTQRLSKEYNKIFRVKDIDLRVPKGAVYGFLGPNGAGKSTTLKMLLGLAKPTQGNINILGKELNEKNRISILKDIGSLIESPSYYGHLTGLENMTIMQRLLDLPKKNVNEALKIVRLENQKNKKVSQYSLGMKQRLGIAMAIMKFPKLLILDEPTNGLDPAGIEEIRELIKSLPEKYGMTVLISSHLLSEIDQIATSIGIINHGELVFQDSIKELHNRGQSQIAIKTKNVVSAQKLLNTKGYMSLIQDGYLTIENLKDSDVAKINGMLVHSNIDVFRIEEHKKSLEDIFLELTGKAVTL
>CP016102.1|AXU45292.1|804637_805345_+|two-component-response-regulator
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFKNVKPDCAILDVVLPDGDGFSIMRKIRETSKIPVIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEISLTAKEHSLLLKLYENKGRIVTSDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPRHLLTVRGLGYKLMIN
>CP016102.1|AXU45293.1|805389_806796_+|two-component-sensor-histidine-kinase
MDSVKYILRRFIGSSILISLLFIVLNIAGFLLFSYMLFVSKYSDNLDTSDSREIKSNLIMIEDNLILKDGKFILDDSSKEVLHKNKVWAMLIDNNGDRVWGFDLPKEIPSHYTLTDVAKFSRFFLKDYPVYVWEHPNGILVTGYPKDKYTKFNLTYTIKEIEQFPMLIIGMFLVNAIVTFLIALFIGLKMVKSIKPIITGIKLMSKGEPVLLQEKGILSDISKSINTVSKELQMKDEKLRKKEEARSNWIAGISHDIRTPLSMIIGYAGELEESSSLSNREQEQVSIICNQGVKIRELVNDLNLVSKLEYNMQALNCDKIRVSAFLRELVSEFINNSLDNDFYIELDILNEDIIIDADKKLLKRAISNLIQNSITHNQQGCNIRVTSKSDLDFCYIIVEDDGKGMSQEKINSLLKSQNGLSEAYAKGQNHGLGILIVSGIINAHRGKLDITSIDSQGLKIILKLPLIK
>CP016102.1|AXU45294.1|808194_808584_+|regulatory-protein
MTIKKLPQSELKIMKFIWKSDSKVTSRDIVLGMEQKYQWKQTTTLTLLSRLVVKRFLNSQKIDKYTHYEVLIKEKEYIGVETRDFFRNIHDSSIKSLLLSLHENINLSKDDILLIEEWIKNLKEEEKDV

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Crispr_ID: CP016102_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_4

798421-798634

Orphan

Consensus_repeat	Method
ATTGATGGTAAAAAATATTACTTTAAT	CRISPRCasFinder

3 spacers

The CRISPR arrays of CP016102_4

>merge|CP016102|4|798421-798634|CRISPRCasFinder
TTGAATGGCAAAAAATATTATTTTGATAATGACTCAAAAGCAGTTACTGGATGGCAAACCATTGATGGTAAAAAATATTACTTTAATCTTAACACTGCTGAAGCAGCTACTGGATGGCAAACTATTGATGGTAAAAAATATTACTTTAATACTAACACTTCCATAGCTTCAACTGGTTATACAATTATTAATGGTAAACATTTTTATTTTAATA

>CP016102|4|4|798421-798634|CRISPRCasFinder
TTGAATGGCAAAAAATATTATTTTGAT	AATGACTCAAAAGCAGTTACTGGATGGCAAACC
ATTGATGGTAAAAAATATTACTTTAAT	CTTAACACTGCTGAAGCAGCTACTGGATGGCAAACT
ATTGATGGTAAAAAATATTACTTTAAT	ACTAACACTTCCATAGCTTCAACTGGTTATACAATT
ATTAATGGTAAACATTTTTATTTTAATA

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU45289.1\|802042_802780_-\|lantibiotic-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226663
CP016102.1\|AXU45294.1\|808194_808584_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP016102.1\|AXU45281.1\|783309_783864_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224511
CP016102.1\|AXU45291.1\|803552_804467_-\|lantibiotic-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
CP016102.1\|AXU45283.1\|791419_791920_+\|cell-wall-hydrolase-protein	unknown	unknown	gnl\|CDD\|273708
CP016102.1\|AXU45279.1\|780515_781709_+\|Na(+)/H(+)-antiporter	unknown	unknown	gnl\|CDD\|223104
CP016102.1\|AXU45278.1\|779196_780453_+\|chloride-ion-channel-protein	unknown	unknown	gnl\|CDD\|239654
CP016102.1\|AXU45276.1\|776095_776680_-\|transposase	unknown	unknown	gnl\|CDD\|222853
CP016102.1\|AXU45277.1\|777478_778213_+\|metallo-beta-lactamase-superfamily-protein	unknown	unknown	gnl\|CDD\|293807
CP016102.1\|AXU45285.1\|799282_799981_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372196
CP016102.1\|AXU45292.1\|804637_805345_+\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP016102.1\|AXU45280.1\|781910_782291_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP016102.1\|AXU45287.1\|800860_801130_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378914
CP016102.1\|AXU45288.1\|801261_801564_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU45275.1\|773484_775329_+\|multidrug-ABC-transporter-ATPase-and-permease	unknown	unknown	gnl\|CDD\|224055
CP016102.1\|AXU45282.1\|784194_791298_+\|toxin-B	unknown	unknown	gnl\|CDD\|372383
CP016102.1\|AXU45290.1\|802791_803553_-\|lantibiotic-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378937
CP016102.1\|AXU45284.1\|792028_792160_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU45286.1\|800397_800643_+\|Pathogenicity-locus	unknown	unknown	gnl\|CDD\|371697
CP016102.1\|AXU45293.1\|805389_806796_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU45289.1\|802042_802780_-\|lantibiotic-ABC-transporter-permease	gnl\|CDD\|226663	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown].	4.26192e-27
CP016102.1\|AXU45294.1\|808194_808584_+\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	9.73545e-21
CP016102.1\|AXU45281.1\|783309_783864_+\|transcriptional-regulator	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.82359e-06
CP016102.1\|AXU45291.1\|803552_804467_-\|lantibiotic-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.1402e-90
CP016102.1\|AXU45283.1\|791419_791920_+\|cell-wall-hydrolase-protein	gnl\|CDD\|273708	TIGR01593, Uncharacterized_protein_CPE0383, toxin secretion/phage lysis holin. This model describes one of the many mutally dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species. [Protein fate, Protein and peptide secretion and trafficking, Mobile and extrachromosomal element functions, Prophage functions].	5.64663e-25
CP016102.1\|AXU45279.1\|780515_781709_+\|Na(+)/H(+)-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.15814e-28
CP016102.1\|AXU45278.1\|779196_780453_+\|chloride-ion-channel-protein	gnl\|CDD\|239654	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.	1.51119e-152
CP016102.1\|AXU45276.1\|776095_776680_-\|transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.2879e-50
CP016102.1\|AXU45277.1\|777478_778213_+\|metallo-beta-lactamase-superfamily-protein	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	9.90292e-59
CP016102.1\|AXU45285.1\|799282_799981_-\|hypothetical-protein	gnl\|CDD\|372196	pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homolog of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle.	0.0001343
CP016102.1\|AXU45292.1\|804637_805345_+\|two-component-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.99313e-74
CP016102.1\|AXU45280.1\|781910_782291_+\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	2.82322e-05
CP016102.1\|AXU45287.1\|800860_801130_-\|hypothetical-protein	gnl\|CDD\|378914	pfam12675, DUF3795, Protein of unknown function (DUF3795). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 99 and 171 amino acids in length. This protein is likely to be zinc binding given the conserved cysteines.	1.72307e-09
CP016102.1\|AXU45275.1\|773484_775329_+\|multidrug-ABC-transporter-ATPase-and-permease	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.80459e-132
CP016102.1\|AXU45282.1\|784194_791298_+\|toxin-B	gnl\|CDD\|372383	pfam12920, TcdA_TcdB_pore, TcdA/TcdB pore forming domain. This family represents the most conserved region within the C. difficile Toxin A and Toxin B pore forming region.	0
CP016102.1\|AXU45290.1\|802791_803553_-\|lantibiotic-ABC-transporter-permease	gnl\|CDD\|378937	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.34887e-13
CP016102.1\|AXU45286.1\|800397_800643_+\|Pathogenicity-locus	gnl\|CDD\|371697	pfam11731, Cdd1, Pathogenicity locus. Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.	8.62571e-29
CP016102.1\|AXU45293.1\|805389_806796_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.91441e-31

>CP016102.1|AXU45284.1|792028_792160_+|hypothetical-protein
MPRDTQVLNTYNFEASVHYYMDDKVVYQTLVHKDGAWSVGKIY
>CP016102.1|AXU45283.1|791419_791920_+|cell-wall-hydrolase-protein
MHSSSPFYISNGNKIFFYINLGGVMNMTISFLSEHIFIKLVILTISFDTLLGCLSAIKSRKFNSSFGIDGGIRKVAMIACIFFLSVVDILTKFNFLFMLPQDCINFLRLKHLGISEFFSILFILYESVSILKNMCLCGLPVPKRLKEKIAVLLDAMTDEMNAKDEK
>CP016102.1|AXU45282.1|784194_791298_+|toxin-B
MSLVNRKQLEKMANVRFRVQEDEYVAILDALEEYHNMSENTVVEKYLKLKDINSLTDTYIDTYKKSGRNKALKKFKEYLVIEILELKNSNLTPVEKNLHFIWIGGQINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTLKKTIIESASNDTLESFRENLNDPEFNHTAFFRKRMQIIYDKQQNFINYYKAQKEENPDLIIDDIVKTYLSNEYSKDIDELNAYIEESLNKVTENSGNDVRNFEEFKTGEVFNLYEQELVERWNLAGASDILRVAILKNIGGVYLDVDMLPGIHPDLFKDINKPDSVKTAVDWEEMQLEAIMKHKEYIPEYTSKHFDTLDEEVQSSFESVLASKSDKSEIFLPLGDIEVSPLEVKIAFAKGSIINQALISAKDSYCSDLLIKQIQNRYKILNDTLGPIISQGNDFNTTMNNFGESLGAIANEENISFIAKIGSYLRVGFYPEANTTITLSGPTIYAGAYKDLLTFKEMSIDTSILSSELRNFEFPKVNISQATEQEKNSLWQFNEERAKIQFEEYKKNYFEGALGEDDNLDFSQNTVTDKEYLLEKISSSTKSSERGYVHYIVQLQGDKISYEAACNLFAKNPYDSILFQKNIEDSEVAYYYNPTDSEIQEIDKYRIPDRISDRPKIKLTFIGHGKAEFNTDIFAGLDVDSLSSEIETAIGLAKEDISPKSIEINLLGCNMFSYSVNVEETYPGKLLLRVKDKVSELMPSMSQDSIIVSANQYEVRINSEGRRELLDHSGEWINKEESIIKDISSKEYISFNPKENKIIVKSKNLPELSTLLQEIRNNSNSSDIELEEKVMLAECEINVISNIETQVVEERIEEAKSLTSDSINYIKNEFKLIESISDALCDLKQQNELEDSHFISFEDISETDEGFSIRFINKETGESIFVETEKTIFSEYANHITEEISKIKGTIFDTVNGKLVKKVNLDTTHEVNTLNAAFFIQSLIEYNSSKESLSNLSVAMKVQVYAQLFSTGLNTITDAAKVVELVSTALDETIDLLPTLSEGLPIIATIIDGVSLGAAIKELSETSDPLLRQEIEAKIGIMAVNLTTATTAIITSSLGIASGFSILLVPLAGISAGIPSLVNNELVLRDKATKVVDYFKHVSLVETEGVFTLLDDKVMMPQDDLVISEIDFNNNSIVLGKCEIWRMEGGSGHTVTDDIDHFFSAPSITYREPHLSIYDVLEVQKEELDLSKDLMVLPNAPNRVFAWETGWTPGLRSLENDGTKLLDRIRDNYEGEFYWRYFAFIADALITTLKPRYEDTNIRINLDSNTRSFIVPIITTEYIREKLSYSFYGSGGTYALSLSQYNMGINIELSESDVWIIDVDNVVRDVTIESDKIKKGDLIEGILSTLSIEENKIILNSHEINFSGEVNGSNGFVSLTFSILEGINAIIEVDLLSKSYKLLISGELKILMLNSNHIQQKIDYIGFNSELQKNIPYSFVDSEGKENGFINGSTKEGLFVSELPDVVLISKVYMDDSKPSFGYYSNNLKDVKVITKDNVNILTGYYLKDDIKISLSLTLQDEKTIKLNSVHLDESGVAEILKFMNRKGSTNTSDSLMSFLESMNIKSIFVNFLQSNIKFILDANFIISGTTSIGQFEFICDENNNIQPYFIKFNTLETNYTLYVGNRQNMIVEPNYDLDDSGDISSTVINFSQKYLYGIDSCVNKVVISPNIYTDEINITPVYETNNTYPEVIVLDANYINEKINVNINDLSIRYVWSNDGNDFILMSTSEENKVSQVKIRFVNVFKDKTLANKLSFNFSDKQDVPVSEIILSFTPSYYEDGLIGYDLGLVSLYNEKFYINNFGMMVSGLIYINDSLYYFKPPVNNLITGFVTVGDDKYYFNPINGGAASIGETIIDDKNYYFNQSGVLQTGVFSTEDGFKYFAPANTLDENLEGEAIDFTGKLIIDENIYYFEDNYRGAVEWKELDGEMHYFSPETGKAFKGLNQIGDDKYYFNSDGVMQKGFVSINDNKHYFDDSGVMKVGYTEIDGKHFYFAENGEMQIGVFNTEDGFKYFAHHNEDLGNEEGEEISYSGILNFNNKIYYFDDSFTAVVGWKDLEDGSKYYFDEDTAEAYIGLSLINDGQYYFNDDGIMQVGFVTINDKVFYFSDSGIIESGVQNIDDNYFYIDDNGIVQIGVFDTSDGYKYFAPANTVNDNIYGQAVEYSGLVRVGEDVYYFGETYTIETGWIYDMENESDKYYFDPETKKACKGINLIDDIKYYFDEKGIMRTGLISFENNNYYFNENGEMQFGYINIEDKMFYFGEDGVMQIGVFNTPDGFKYFAHQNTLDENFEGESINYTGWLDLDEKRYYFTDEYIAATGSVIIDGEEYYFDPDTAQLVISE
>CP016102.1|AXU45281.1|783309_783864_+|transcriptional-regulator
MQKSFYELIALVRNNSVDDLQEILFMFKPLIKKLSRVLHYEEGETDLIIFFIELIKNIKLSSFAEKSDAIIVKYIHKSLLNKTFELSRRYSKMKFNFVEFDENVLNMKNNYQSKSVFEEDICFFEYILKELSGIQRKVILYKYLKGYSDREISVKLKISRQAVNKAKNRAFKKIKKDYENYFNL
>CP016102.1|AXU45280.1|781910_782291_+|regulatory-protein
MYLKKLSKLELVIMKFIWNLDIKTNSYEIIDYMKEEHNLPEKVALKTLSKLSKKRLLYVQETDKCMYYTVAIKERAYLEFISRNVQNLLKNNFIRNLLVSFHEEELTEEKIKSLENWVVNWEEAYI
>CP016102.1|AXU45279.1|780515_781709_+|Na(+)/H(+)-antiporter
MLTSLALIFLLGMASGGIFKKIKLPSLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLMEEGYGIEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAISFLQIPVSIILGVIAGAVIGLCLAVFFKNVHMRDSAKGVLLLSISFLMISLETTLEGIVPFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAVILIFGVLLFRIVGVFFCLIKTNLTIKERLFCMIGYIPKATVQAAIGGVPLAMGMVSGQLILTLAVLAILITAPLGAFGIDVTYKKLLTSVKGESK
>CP016102.1|AXU45278.1|779196_780453_+|chloride-ion-channel-protein
MIEKFKTLIWIKMIIRIKIVYKTYGGLFLLGLIGIPVGAIIGLIDTIFGTVLLKVTDIRETYPMYLIPFLAVVGVVIAYCYFKFGGKSSKGMNLIFEVGHGEEEIIPLRLVPFIISGTWLTHLFGGSAGREGVAVQIGATFSHWVGKRLPIKNASSIFLVTGMAAGFAGLFETPIAAILFAMEVLVAGSLEYQSLFPAFTASFTASAVSKALGLEKFYFTLSSKVVFDLSIFWKLIVLGIIFGMVGGAFAWCLKLAKRKIGNRLKNPMIRIAIIGVCLSVLFLLFYKGRYSGLGTNLIQNSFYGGEIYSFDWLLKFILTILTLSAGFQGGEVTPLFSIGASLGVLLAGFFNLPIELVAALGYASVFGSATNTFFAPVFIGAEVFGYSYLPYFFVVCAISYIFNMDKSIYSLQKISTKQ
>CP016102.1|AXU45277.1|777478_778213_+|metallo-beta-lactamase-superfamily-protein
MNLTKGLDVLKISSNVLGEDKVMYIPVIYTEDEATLIDTGLPGQGDLIIDALNKSNTSFDKLKNIIITHHDIDHIGNINYLREKSKNSIKVYAYKSEVSYITGEETPFKLCMLEQMVDKIDDKMLSMLNVMGLGFKSSYTKVDVSLDNHEILNLGEKMEVIHTGGHTRGHICLYLKESKILIAGDLLQIENGELKPVDVMHSNKQELKDAIKNISNYDIETIVFSHGGLYQKNIIETLKNLIIE
>CP016102.1|AXU45276.1|776095_776680_-|transposase
MKELGIKSIIRKKVYRRKFKSYEIYDNILNRKFRANQPLEKICMDITYIPIGKKFLYMNVAKDLFNGEIVAYEISTKMDTKLVNNTVNQLINMNLAKDCILHTDQGSQYTSRSYSKRLKDNGIIQSMSRRGNCWDNAPIESFFSHFKSELIYLIDTTDPKKMISLINDYIYFYNNERIQLKNGMSPIEYRTHCA
>CP016102.1|AXU45275.1|773484_775329_+|multidrug-ABC-transporter-ATPase-and-permease
MKKKCSKNKKIENRNNKNKSLKRFAFLTFKKNKGKLLLSFIMVIIVAVVDLVQPQVTRMIVDEGIGTKDANLLLKLMFIYGAAGVSSAILYLLLSYLYSAIKKNVTVDIKIKLLNHLSKLSGKYYSNIKTGNIISIIESDIFIIENFGAELAFSILVNIFTASMALFFLVRMQVDLFLIVLILQIILSIFQNKFTKLISKNTREIREDSGSLSNKIQEYVSNIKNVVVSKSRMKFFSSYLSEEKNLIRKYLKLDLIMNGNIAIAKSISILVTVSIYGVGGYKIISGNMTIGELLAFQQYTNMFIGPCISIVRANTRIQQAKASLDRVYSVIDEEIDIKVNNRGLRIEDKECNIIEFKNIYFSYKEIGKKKLQNLEQDEQIDCTYEDIETDSYILSNINITFRKGETTALIGESGSGKSTIVNLLYRLWDIQKGEITIDGINIKNINLKSLRKSINIVTQDMLMFDDTIRNNININKSLSDEELKNICSVVGMNDFISRLENGFDTIIGEKGVKISGGQKQRIALARSLVNDSKILILDEATSALDNISQSEILRNIRAYVKGKIVIIIAHRLSTIKDADNIYVLEKGKVVESGKDKELFIRNGIYRKLVTLNTQ
>CP016102.1|AXU45285.1|799282_799981_-|hypothetical-protein
MFSKKNEGNEFSNEGKGSSKKIIKFFKSTKGIALLVFILGVFFGNISSPACSEDHEKVISNQTSVIDSQKTEIETLNSKLSDAEPWFKMKDDEKKAIEAENQRKAEEAKKAEEAKKAEEQRKKEEEEKKGYDTGITYDQLARTPDDYKYKKVKFEGKVIQVIEDGDEVQIRLAVSGNYDKVVLCSYKKSITPSRVLEDDYITIRGISAGTITYESTMGGNITIPGIAVEKIN
>CP016102.1|AXU45286.1|800397_800643_+|Pathogenicity-locus
MGELQKIPGVGKATEKSLIMLGYTTIKSLKDANPAQMYEKECLMRGQHIDRCQLYVYRCAVYFASTENPEPEKLKWWYWKD
>CP016102.1|AXU45287.1|800860_801130_-|hypothetical-protein
MFESRCGVCCDSCTKKEQVNCTGCPTMEKPFWGGECKVKTCCESKELNHCGECDTFPCDMLLNKGKDQGFDPMVNIEQCRKWLEETVSN
>CP016102.1|AXU45288.1|801261_801564_-|hypothetical-protein
MEYSKGFKVIYSLVEYSKRFKVIYCVMEYSKRFKVIYCVMEYLKGFKVIYGVMEYSKRFKAIYDVMEYSKRFKSIYSFTKYSNGFEVIYCALKYSKIFLE
>CP016102.1|AXU45289.1|802042_802780_-|lantibiotic-ABC-transporter-permease
MLRKSVLGEILKLKNSFIWYVLLALPLISVLIGSGNFYLNQGILKKEWYSLWTQVSLFYGEFFFPILISIFCAYICRLEHMNHNWNNVMTLPVKLKNIFLSKLTVVSILTAITQVFFVIFYIVAGNMFGFSGSVPKELTGWIAKGWIISISIASIQLYMSIKIRSFATPIGISLCLSLFGMGLIVAKPAVGIFFPYSMLGSAMGVIKQSALNVNDTIVTICVAFITTILFSEIANRNFRKNDVIS
>CP016102.1|AXU45290.1|802791_803553_-|lantibiotic-ABC-transporter-permease
MKYLGLEFYKLKRKKIILMTFLFVAVEIMWCIVNSNRAITRNPDMLGGFEYSYMLMSFASLNGLFFPILISIITSRISDIEHKGDTWKLLKSSVTSLNSIYSSKFLCSAILVSVAVLMQVLSIVLFGHFRGVIESISVFSLLKYTLGTILVSIAIIALHLWIATVIPNQMVAITFGMIGSFIGLTSGLFYQGIRRLFIWSYYLELSPLSYAYDNVLGSSVYRIDMNFSITILVFLIGMLIYYIGRNHLLKKEV
>CP016102.1|AXU45291.1|803552_804467_-|lantibiotic-ABC-transporter-ATP-binding-protein
MEMIIRTQRLSKEYNKIFRVKDIDLRVPKGAVYGFLGPNGAGKSTTLKMLLGLAKPTQGNINILGKELNEKNRISILKDIGSLIESPSYYGHLTGLENMTIMQRLLDLPKKNVNEALKIVRLENQKNKKVSQYSLGMKQRLGIAMAIMKFPKLLILDEPTNGLDPAGIEEIRELIKSLPEKYGMTVLISSHLLSEIDQIATSIGIINHGELVFQDSIKELHNRGQSQIAIKTKNVVSAQKLLNTKGYMSLIQDGYLTIENLKDSDVAKINGMLVHSNIDVFRIEEHKKSLEDIFLELTGKAVTL
>CP016102.1|AXU45292.1|804637_805345_+|two-component-response-regulator
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFKNVKPDCAILDVVLPDGDGFSIMRKIRETSKIPVIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEISLTAKEHSLLLKLYENKGRIVTSDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPRHLLTVRGLGYKLMIN
>CP016102.1|AXU45293.1|805389_806796_+|two-component-sensor-histidine-kinase
MDSVKYILRRFIGSSILISLLFIVLNIAGFLLFSYMLFVSKYSDNLDTSDSREIKSNLIMIEDNLILKDGKFILDDSSKEVLHKNKVWAMLIDNNGDRVWGFDLPKEIPSHYTLTDVAKFSRFFLKDYPVYVWEHPNGILVTGYPKDKYTKFNLTYTIKEIEQFPMLIIGMFLVNAIVTFLIALFIGLKMVKSIKPIITGIKLMSKGEPVLLQEKGILSDISKSINTVSKELQMKDEKLRKKEEARSNWIAGISHDIRTPLSMIIGYAGELEESSSLSNREQEQVSIICNQGVKIRELVNDLNLVSKLEYNMQALNCDKIRVSAFLRELVSEFINNSLDNDFYIELDILNEDIIIDADKKLLKRAISNLIQNSITHNQQGCNIRVTSKSDLDFCYIIVEDDGKGMSQEKINSLLKSQNGLSEAYAKGQNHGLGILIVSGIINAHRGKLDITSIDSQGLKIILKLPLIK
>CP016102.1|AXU45294.1|808194_808584_+|regulatory-protein
MTIKKLPQSELKIMKFIWKSDSKVTSRDIVLGMEQKYQWKQTTTLTLLSRLVVKRFLNSQKIDKYTHYEVLIKEKEYIGVETRDFFRNIHDSSIKSLLLSLHENINLSKDDILLIEEWIKNLKEEEKDV

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Crispr_ID: CP016102_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_6

1568770-1568997

Orphan

I-A

Consensus_repeat	Method
TGTTTTATATTAACTAAGTGGTATGTAAATAAAATAAAATT	PILER-CR
GTTTTATATTAACTAAGTGGTATGTAAATA	CRISPRCasFinder

3 spacers

The CRISPR arrays of CP016102_6

>merge|CP016102|6|1568770-1568997|PILER-CR,CRISPRCasFinder
GTTTTATATTAACTAAGTGGTATGTAAATAAAGTTAAATTTATTACATCTAATTCTGTCTCTTCATGTTTTATATTAACTAAGTGGTATGTAAATACAACAGCACCATAAAAAAAACCATTCCTAAAAAACTGTTTTATATTAACTAAGTGGTATGTAAATAGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAAGTTTTACATTAACTAAAATGTATAGAATAA

>CP016102|6|1|1568770-1568941|PILER-CR
GTTTTATATTAACTAAGTGGTATGTAAATAAAGTTAAATTT	ATTACATCTAATTCTGTCTCTTCAT
GTTTTATATTAACTAAGTGGTATGTAAATACAACAGCACCA	TAAAAAAAACCATTCCTAAAAAACTGTTTTATATT
AACTAAGTGGTATGTAAATAGTATAATGTT

>CP016102|6|6|1568770-1568997|CRISPRCasFinder
GTTTTATATTAACTAAGTGGTATGTAAATA	AAGTTAAATTTATTACATCTAATTCTGTCTCTTCAT
GTTTTATATTAACTAAGTGGTATGTAAATA	CAACAGCACCATAAAAAAAACCATTCCTAAAAAACT
GTTTTATATTAACTAAGTGGTATGTAAATA	GTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA
GTTTTACATTAACTAAAATGTATAGAATAA

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU45968.1\|1567296_1567857_-\|integrase	unknown	unknown	gnl\|CDD\|271189
CP016102.1\|AXU45970.1\|1569321_1571055_-\|signaling-protein	unknown	unknown	gnl\|CDD\|143635
CP016102.1\|AXU45966.1\|1564669_1565320_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|238952
CP016102.1\|AXU45963.1\|1562401_1563337_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
CP016102.1\|AXU45978.1\|1578766_1579132_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP016102.1\|AXU45965.1\|1564156_1564585_+\|EamA-like-transporter-family-protein	unknown	unknown	gnl\|CDD\|377396
CP016102.1\|AXU45979.1\|1579362_1579497_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU45973.1\|1575184_1575994_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
CP016102.1\|AXU45976.1\|1577240_1577915_-\|MgtC/SapB-transporter	unknown	unknown	gnl\|CDD\|224204
CP016102.1\|AXU45971.1\|1571291_1572137_-\|signaling-protein	unknown	unknown	gnl\|CDD\|143635
CP016102.1\|AXU45967.1\|1565437_1566793_-\|drug/sodium-antiporter	unknown	unknown	gnl\|CDD\|240548
CP016102.1\|AXU45961.1\|1559428_1560871_-\|sigma-54-dependent-regulatory-protein	unknown	unknown	gnl\|CDD\|226350
CP016102.1\|AXU45974.1\|1576146_1576386_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU45960.1\|1558644_1559229_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376406
CP016102.1\|AXU45972.1\|1572167_1574402_-\|signaling-protein	unknown	unknown	gnl\|CDD\|238923
CP016102.1\|AXU45964.1\|1563456_1564005_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU45969.1\|1567886_1568243_+\|integrase,-catalytic-region	unknown	unknown	gnl\|CDD\|222853
CP016102.1\|AXU45977.1\|1578134_1578689_-\|isochorismatase	unknown	unknown	gnl\|CDD\|238496
CP016102.1\|AXU45962.1\|1561186_1562131_+\|membrane-protein	unknown	unknown	gnl\|CDD\|273359
CP016102.1\|AXU45975.1\|1576572_1576749_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU45968.1\|1567296_1567857_-\|integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.27143e-21
CP016102.1\|AXU45970.1\|1569321_1571055_-\|signaling-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.53802e-46
CP016102.1\|AXU45966.1\|1564669_1565320_+\|ATP-binding-protein	gnl\|CDD\|238952	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.	2.2293e-55
CP016102.1\|AXU45963.1\|1562401_1563337_-\|radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	4.25879e-178
CP016102.1\|AXU45978.1\|1578766_1579132_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.48025e-25
CP016102.1\|AXU45965.1\|1564156_1564585_+\|EamA-like-transporter-family-protein	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	2.2504e-17
CP016102.1\|AXU45973.1\|1575184_1575994_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.54289e-25
CP016102.1\|AXU45971.1\|1571291_1572137_-\|signaling-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.21235e-30
CP016102.1\|AXU45967.1\|1565437_1566793_-\|drug/sodium-antiporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	8.96466e-116
CP016102.1\|AXU45961.1\|1559428_1560871_-\|sigma-54-dependent-regulatory-protein	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	3.54312e-137
CP016102.1\|AXU45960.1\|1558644_1559229_-\|hypothetical-protein	gnl\|CDD\|376406	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C.	2.48263e-20
CP016102.1\|AXU45972.1\|1572167_1574402_-\|signaling-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.52024e-90
CP016102.1\|AXU45976.1\|1577240_1577915_-\|MgtC/SapB-transporter	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.38574e-53
CP016102.1\|AXU45969.1\|1567886_1568243_+\|integrase,-catalytic-region	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.97237e-20
CP016102.1\|AXU45962.1\|1561186_1562131_+\|membrane-protein	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.34015e-27
CP016102.1\|AXU45977.1\|1578134_1578689_-\|isochorismatase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	1.86218e-57

>CP016102.1|AXU45969.1|1567886_1568243_+|integrase,-catalytic-region
MVFETFDKVIELYPNAKPVFHSDRGFQYTSKVFESKLLAQGMIQSMSRAGRCIDNAPMEGIWGILKVEMYYLRKFDTYEQLVKIIENYIYYYNNFRYQKRLNSMSPLEFRKYLSTEIA
>CP016102.1|AXU45968.1|1567296_1567857_-|integrase
MKLIDITPSILQSYINNIYNEHMLNSAKNQVGFIKSVLKESYRLKEISENICDFVTTLIKKNSSTSKFYTKQKAQLLLEKSKNIPIGIPIFLMLTLGLRFGEAVSLIWSDVDLDKKIIHVNQTLVYVDNKIIFKDPKTPKSKRKLFAPDELISLLEEEKFKQNKLKLQAILKNEFDLICLNKRFNP
>CP016102.1|AXU45967.1|1565437_1566793_-|drug/sodium-antiporter
MDTKISINENMSLGKRFFKYLAPSVVAMWVFSLYTMVDGIFVSKGVGELALAAVNISMPFINFIFAVSLLFSTGASTIIAIYLGKKDIKSANEVFSFNLVSIIILSIIILAITFFNLDRLALFLGATESTIGMVKDYLGIIIFFNGFFIVSYSLEVIIKTDGFPILATVGVIISALTNIILDYLFVIEFGWGVKGAGIATGLSQVFSTIFFLIHFLRKNSTLNFSKFRIDFKTLRKIVFIGFPDSTTELSCGIVVLLFNLSLTKYIGENALIYYSVINYINTLVLMTMMGITQGMQPLTSFYYGAGNIDNVKKLLKMGIKATIIASIAVFAICMAFSEPIVSLFIHPEETMLFNEGVRVFKIFSISFLLVGINVIISGFFVSVEKPSISTVISLGRGLVIVVLSLISMILIFGGQGIWMTTIVSEFICLILSLVFLKKNFSTLDSNLNKVA
>CP016102.1|AXU45966.1|1564669_1565320_+|ATP-binding-protein
MADEKFVMSFSGGKDSILALNRMLKKGYKPVALLTTISEEHGKSWTHNLEYNMLKQVSSNIGLPLLVAECGVEGYEESFERALIKAKNMGATICAYGDIDIESHRKWDTDRCEAVGMKVDLPLWQESREDLVYEFIDSGFCSVVTKVNLKHLGEEFLGKKLTRELVEKIKNAGADPCGEHGEYHTFVVDGPIFKKPVEYEVKGTLIKDGYGYLEIK
>CP016102.1|AXU45965.1|1564156_1564585_+|EamA-like-transporter-family-protein
MTKLWAIIFALLAGGSTALEAFINGELGKSTTALVATFISLTVGAIFFLASIIVTGDLKCLVSINGFNYKLLLGGVFGGLIIYFTVKAIPNLGVSNTLILTLVSQVLVGFFIDSVILGQETMHLYKYIGVILLILGTFFIVN
>CP016102.1|AXU45964.1|1563456_1564005_-|hypothetical-protein
MYTNFNIDFNNFNKKENATKFMLMGVLLIILGLLCLTFKTLGIKLISWTFGIALLFFAYLNLKNINELKRYATKEEIKPSINIQWVLIIACILLFVFPQKIQSIFSLFLGFYLIFNQLVALVNSKNNPYSKFTTWNIVKILFGICLILSPLFLSRFIVSIMSFFIILFGLVLFFSGNTARKY
>CP016102.1|AXU45963.1|1562401_1563337_-|radical-SAM-protein
MDKFKYAFNNKRYHTWNYYLRNTFGEKVFKVSINAGFTCPNIDGSLGYGGCTYCSKEGSGDFAGNPKDNLISQFYNIKEMMLKKWPHAKYIGYFQAYTNTYAPLEVLKEKYETILELEDVIGLSISTRPDCLPDDVVEYLSELNKRTNLWVELGLQTIHDSTSKIINRGHDYKTFVEGVEKLKSKNIKVVVHIINGLPGEDYNMMMETAKAVGKMGVDGIKIHLLHVIKDTPMEKMLQNGMLTLMEQDEYINLVCDQLEILPETMIIHRLTGDGKRDELVGPIWSLKKWEILNQIDDTLKARNSYQSCKFV
>CP016102.1|AXU45962.1|1561186_1562131_+|membrane-protein
MGEKSKGYVFIAIAGLLWATLGLFGKFLMGNGLTSEQVAFTRLFFGFIVLGVYSSIRTPQILKISKKGIIYSVIIGIICQAMFNLCYFKAIDIAGVSIAAVLLYTSPLFLAIFSKVCYKENITRSKLFSLILCFIGAIMAVSGGRLDFQGLNAFGLFLGTLSAIAYALMPTISKNALKEFSSSTILVYSFLFGAIFMIPSSRPWEILNYAKDLDVLSCMLMLGIVPAALAYIFYATGISKGVELSVAGVVASVELVGSVIIGCTILGESFSLGKLFGVMLMLISAVVALNLSYDEIRIFYKSNKLKQIEKTESI
>CP016102.1|AXU45961.1|1559428_1560871_-|sigma-54-dependent-regulatory-protein
MNLNLELDLEFYQKILEASHDEICVSDDKGIIIYCNKAFEENYGLKKEDILGKNVSFLEDSGYSTKSPIPIVLKTKTKFSLEQDTQAGKKLIITATPIFDENGNLEFTVENCRDITELNNIKNKLEDTKKQVKKYKSEVETLYRTALRIEDTVIMDGIVMRPIINTVNHVSKTDVSVLLLGESGTGKSSLARYIHHNSNRSNGPFITINCATISPQLLESELFGYTSGAFTGASTKGKVGLVELANGGTLFLDEIGDIPQNLQAKFLQLIQDRTFTPVGSLKNKKVDIRIISATNADLVSKVKEKKFREDLYYRLNVIEIKLPPLRERRDNLVEIIKYYFNRYSSDFNLNKTISKEAMDAIANYGFPGNIRELQNIIQKILLTCTDNHITIDDLPNILTKNIHITNNGNKTHISQINKVIISDSKSTNYKNKNFDTLIKEYEKNIILDAYEKFGSSYKVAKHLEISQSKANRLIRKYTNT
>CP016102.1|AXU45960.1|1558644_1559229_-|hypothetical-protein
MLMNTHFIMAKSILDNIDENKTFFISEKNFIYGNIKPDAFSKYKLKKHYLDESFNMIVSKINYLCSLNIDSLSKYFSVSRLSQELGVICHFLCDFFCVAHSERWEFKHSLNKHVTYERELGAFAKDVDLSKIKCGTINSSFEKFFTKLYSDYKKRTDYMNDLKFSAYTCNSVINYILDSILSNTIKSYNIANCG
>CP016102.1|AXU45970.1|1569321_1571055_-|signaling-protein
MSILLKKAPKLAKHIITSFYINRDIDEVLKYLCENVTWIGPGEQEFLTSFNEIKNYFYAGQDEIPSCDINNDIFETVSEDENRCMVLGKYTVRTKENAQMILEVNQRCTFEIIEDRGKLLVKHMHISNPYGEMQLDEYFPTKIGTQSYDYLQRLLKEKTEVIEMITNNINGGLKGSNDDSTYSFFYVNEGLPKILGYTYDEFMEMSGGSAVGAVYPPDLPKALEDCERCFAKGPTYSSEYRIRKKDGTLMWVLDSGMKSLNSDGIVKINSIITDITQLKNIESELKLERERYRIALQNITDIMFEYDIENDTLIKYQRVEIDKKIELENFETKNYSKLLEFGKIIHLDDIGKLLEVLHGNLRETIEIRQINSLTKNEWRWIRVQCSVIYDSDHNPIKTIGVLKDITEDKSKLESLINQAQRDPLTQLYNQRVSQNLIQEYLCSSDSKNNDALLVIDIDDFKTVNDTFGHLEGNEVLVAVSKILLHNTHDKDIVARIGGDEFTIFIKSLTKDLIIKITNDILNDASKIKVKDNHKITLSIGIAFTDDSTKLYKDLFSKADKALYLSKADGKNCYSTYE
>CP016102.1|AXU45971.1|1571291_1572137_-|signaling-protein
MFKEIFLRTFPGFLIIRDSNYRIIFINDNLKNLIKSYMQDNPLGMTNIEIAKKLPDNIAKFFTDSHNIQLDWEKNYPYDKISNWILEFKKDTTSYWNVLEYKVDVDEKPYIITMANDITKLYEENKRNLHYSITDPLTGAYNRKYLNDRFDIFIGDYIVLIDLDNFKMINDYEGHNVGDKILCDFVSLLNKELINSTSIIRLGGDEFIVIFSSDVDKNYVYSQLETLRENFLKVFSKYKYLSFSYGVDTVKRNLKLTIVELDKKMYKNKEKNKKKFDKNDY
>CP016102.1|AXU45972.1|1572167_1574402_-|signaling-protein
MQNHNYIKMLNKKVEVLSKELDSRNFKLKTLNEIDFFSKIPNREFMYQYIDDCISKNIHIGIMLLNIDNFKLFNDIYGYLVGENLLITLTQNLLHFIPESKGIVAYLKGEGFLIVLPNVSNKELNNMGATIIESARELKIRLPNEKEIYSNVTFSIGSTIWNGEPNMTTLMLFNQVYSALKKAKSEGKNRYILFNFKDNSFYNKLENDKEFLSEISYVLQTKQIEVFYQPLYNIKNNTIVGCEALARWRHPIKVLLTPDKFIPLFEQFGLITELDLHLFEENCKNIRKWIDKNDVFVPICCNFSRLHFFNPNFPSMLKGITEKYNVSTSNFSIEITENILIENTNTIIQQLTELRSYGFSVSMDDFGSGYSSFGMLQNLPFDIIKIDRIFLSHNLNDFKNTTILYSIINIARALGMLTVCEGVETEQHVEFIKSINCDIAQGYYYAKPMECKEFEKLLSKENNSEKMFIKYSDIGKSLIEKIFDGFFIMQDMKKLRANVTEDIQWFDFYNKTEITSFPKVIEHFEKHIKGKKFSILYKSITPHNTESDSLLISGEAVLSDEAAKHQKYSNFYFSANCIISENKLLLAKLHLDLIKTAGYINEFESYSIPKMTNTHLDESNVLSQFYSMLPVGIIRYDLFGDMIITYINEEMFDIIGYTKEQFFGEMGGNLRAIVHPDDLDFVYKKSLDMIDTNKIEPFLYRFIKRDGQIVTVMYTQCNLSAIDGRSIAQGMYIDINKIKNLTKI
>CP016102.1|AXU45973.1|1575184_1575994_+|MerR-family-transcriptional-regulator
MKDYYKIGEISKIYGIGRDSLMYYEEIGILRPVRDINGYRMYNISDIWKLNLIKEFRSLNFPMKKIKEYLDDRSIESTKNILNEELDLIDKKIAEFISHKENIIKRLSSIESVIQNTKIDEIEVVYIEKRKALELNADIKRDEDFDFLIQKLQKEYEDRFNILGNNNIGSAFSTEAINKGIFNEFKSVFCFLESNEKVYNIVFDEGYYVTLNYTGSNSNNKMYMEKVFKFIEENNYKIIADPIEIYKIDIHETGIVEEFVTEIQVPITK
>CP016102.1|AXU45974.1|1576146_1576386_+|hypothetical-protein
MKCSNCGSVNIEKGILTTGGIYAETIGLKYVGDGKLDKVINKTFPVQSTIYSDLCLDCGEIVRTYIKDNTDRNWCKDEK
>CP016102.1|AXU45975.1|1576572_1576749_-|hypothetical-protein
MFRDEMDKCTHMLTAYISSLYDYCDFIDTQLDDFILEYGENVVESCLHQVMVLVSKYN
>CP016102.1|AXU45976.1|1577240_1577915_-|MgtC/SapB-transporter
MNHHILIQFEYIARIITAGFCGALIGYERKNRLKEAGIRTHFIVALASALIIIVSKYGFNDIVGTPGIGLDPARVAAQVVSGIGFLGAGLIFIRNQSVSGLTTAAGIWATAGTGLAIGSGLYLVGIVSSIIIVIVQITLHRDRKWMKLPTAEQVSLKISNSTDSIEYIEGKFKKSNIEIINMNIKRLDGDWLEVVIYTKLPKGYKKTNLLKLFSDNPLIETLEI
>CP016102.1|AXU45977.1|1578134_1578689_-|isochorismatase
MSIALILIDIQNDYFKNGKCELFQSEETAENAKKILLFFRKNNLPIIHIQHISTDKTASFFLPNTHGSEINKIVFPLDNEEIITKHTPDSFFETDLQSILEKKNITNLVICGMMSHMCIDTSVRTAKKLRYDITLISDACTTKNLSWNNIEINANTVHQVFMASLQNSFADVKNTDKFLSNYYK
>CP016102.1|AXU45978.1|1578766_1579132_-|transcriptional-regulator
MKIRAEYTCPLEIVHDIIKGKWKTILIFELRQSNKTFSELQHNIYGINQKMLIQQLKELRDFGIIDKISSAGYPLHVEYFLTNRGKKMLKAVEIMQEIGIEYMLEHGQQEILDNKGICYNK
>CP016102.1|AXU45979.1|1579362_1579497_+|hypothetical-protein
MNISRKAMKIIELAQKIANKRGISVEEAWSEAVTEYKNKYEHIA

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Crispr_ID: CP016102_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_7

1678190-1678876

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTATATGGAATGTAAAT	CRISPRCasFinder
GTTTTATATTAACTATATGGAATGTAAAT	CRT

10 spacers

The CRISPR arrays of CP016102_7

>merge|CP016102|7|1678190-1678876|CRISPRCasFinder,CRT
GTTTTATATTAACTATATGGAATGTAAATTTGTCATAGTAGCGACTTATTACAAAGTATTTTTCTAGTTTTATATTAACTATATGGAATGTAAATTACATCCTCATTAATTTCTTTGCTATCCCAAACAGCAGTTTTATATTAACTATATGGAATGTAAATCTCTTACGCTTTTCAATCACTTTTTCCTTGCTAAAATTGTTTTATATTAACTATATGGAATGTAAATTTGGAAATAAGTATAAAGACAGTGATATGGAAATGGGTTTTATATTAACTATATGGAATGTAAATTATCCATTTCATATTTAGATAAAATCTCTTTAAATGCGTTTTATATTAACTATATGGAATGTAAATATGTTATTACATAAAAATTCTTCATCTATAACTTTAAGTTTTATATTAACTATATGGAATGTAAATAAAATAAGGGTTTAATTTCCCTGGTGTCGAGGAATAGTTTTATATTAACTATATGGAATGTAAATTTTAAATGAAACTCTTGAAATAGTTGACGTAGTAGCGTTTTATATTAACTATATGGAATGTAAATTATATATTAGATGTCAATGTCAAGGATACAAAATTTGTTTTATATTAACTATATGGAATTTAAATCCATCTTTTGTTGCTTTACATAAATTTATATTACTTACGTTTTATACTAACTATACAGAATATAATT

>CP016102|7|7|1678190-1678876|CRISPRCasFinder
GTTTTATATTAACTATATGGAATGTAAAT	TTGTCATAGTAGCGACTTATTACAAAGTATTTTTCTA
GTTTTATATTAACTATATGGAATGTAAAT	TACATCCTCATTAATTTCTTTGCTATCCCAAACAGCA
GTTTTATATTAACTATATGGAATGTAAAT	CTCTTACGCTTTTCAATCACTTTTTCCTTGCTAAAATT
GTTTTATATTAACTATATGGAATGTAAAT	TTGGAAATAAGTATAAAGACAGTGATATGGAAATGG
GTTTTATATTAACTATATGGAATGTAAAT	TATCCATTTCATATTTAGATAAAATCTCTTTAAATGC
GTTTTATATTAACTATATGGAATGTAAAT	ATGTTATTACATAAAAATTCTTCATCTATAACTTTAA
GTTTTATATTAACTATATGGAATGTAAAT	AAAATAAGGGTTTAATTTCCCTGGTGTCGAGGAATA
GTTTTATATTAACTATATGGAATGTAAAT	TTTAAATGAAACTCTTGAAATAGTTGACGTAGTAGC
GTTTTATATTAACTATATGGAATGTAAAT	TATATATTAGATGTCAATGTCAAGGATACAAAATTT
GTTTTATATTAACTATATGGAATTTAAAT	CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC
GTTTTATACTAACTATACAGAATATAATT

>CP016102|7|1|1678190-1678876|CRT
GTTTTATATTAACTATATGGAATGTAAAT	TTGTCATAGTAGCGACTTATTACAAAGTATTTTTCTA
GTTTTATATTAACTATATGGAATGTAAAT	TACATCCTCATTAATTTCTTTGCTATCCCAAACAGCA
GTTTTATATTAACTATATGGAATGTAAAT	CTCTTACGCTTTTCAATCACTTTTTCCTTGCTAAAATT
GTTTTATATTAACTATATGGAATGTAAAT	TTGGAAATAAGTATAAAGACAGTGATATGGAAATGG
GTTTTATATTAACTATATGGAATGTAAAT	TATCCATTTCATATTTAGATAAAATCTCTTTAAATGC
GTTTTATATTAACTATATGGAATGTAAAT	ATGTTATTACATAAAAATTCTTCATCTATAACTTTAA
GTTTTATATTAACTATATGGAATGTAAAT	AAAATAAGGGTTTAATTTCCCTGGTGTCGAGGAATA
GTTTTATATTAACTATATGGAATGTAAAT	TTTAAATGAAACTCTTGAAATAGTTGACGTAGTAGC
GTTTTATATTAACTATATGGAATGTAAAT	TATATATTAGATGTCAATGTCAAGGATACAAAATTT
GTTTTATATTAACTATATGGAATTTAAAT	CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC
GTTTTATACTAACTATACAGAATATAATT

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU46058.1\|1667440_1668340_+\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|274004
CP016102.1\|AXU46069.1\|1682621_1682849_-\|ferrous-ion-transport-protein	unknown	unknown	gnl\|CDD\|377199
CP016102.1\|AXU46076.1\|1689572_1690721_+\|iron-sulfur-protein	unknown	unknown	gnl\|CDD\|224917
CP016102.1\|AXU46068.1\|1680475_1682596_-\|ferrous-ion-transport-protein	unknown	unknown	gnl\|CDD\|223447
CP016102.1\|AXU46064.1\|1673057_1673885_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
CP016102.1\|AXU46072.1\|1685233_1686442_+\|tyrosyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|237360
CP016102.1\|AXU46062.1\|1671597_1671780_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46071.1\|1683788_1684757_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46057.1\|1666703_1667288_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239264
CP016102.1\|AXU46060.1\|1669080_1669728_-\|lactate-utilization-protein-B/C	unknown	unknown	gnl\|CDD\|376839
CP016102.1\|AXU46073.1\|1686502_1687384_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200569
CP016102.1\|AXU46074.1\|1687799_1688714_+\|transporter	unknown	unknown	gnl\|CDD\|223769
CP016102.1\|AXU46067.1\|1679524_1680343_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133409
CP016102.1\|AXU46065.1\|1673859_1674756_-\|NADP-oxidoreductase,-coenzyme-F420-dependent	unknown	unknown	gnl\|CDD\|378484
CP016102.1\|AXU46070.1\|1683175_1683616_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|225064
CP016102.1\|AXU46061.1\|1670117_1671032_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378573
CP016102.1\|AXU46059.1\|1668344_1668914_+\|lipoprotein	unknown	unknown	unknown
CP016102.1\|AXU46066.1\|1675435_1677529_+\|signaling-protein	unknown	unknown	gnl\|CDD\|238923
CP016102.1\|AXU46075.1\|1688936_1689482_+\|ruberythrin	unknown	unknown	gnl\|CDD\|153105
CP016102.1\|AXU46063.1\|1672190_1673039_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU46058.1\|1667440_1668340_+\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|274004	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.	1.71934e-24
CP016102.1\|AXU46069.1\|1682621_1682849_-\|ferrous-ion-transport-protein	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	1.57039e-13
CP016102.1\|AXU46076.1\|1689572_1690721_+\|iron-sulfur-protein	gnl\|CDD\|224917	COG2006, COG2006, Uncharacterized conserved protein [Function unknown].	2.43048e-75
CP016102.1\|AXU46068.1\|1680475_1682596_-\|ferrous-ion-transport-protein	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	7.87532e-151
CP016102.1\|AXU46064.1\|1673057_1673885_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	8.6689e-173
CP016102.1\|AXU46072.1\|1685233_1686442_+\|tyrosyl-tRNA-synthetase	gnl\|CDD\|237360	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.	0
CP016102.1\|AXU46075.1\|1688936_1689482_+\|ruberythrin	gnl\|CDD\|153105	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.	1.62566e-53
CP016102.1\|AXU46073.1\|1686502_1687384_-\|polysaccharide-deacetylase	gnl\|CDD\|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	4.04909e-75
CP016102.1\|AXU46060.1\|1669080_1669728_-\|lactate-utilization-protein-B/C	gnl\|CDD\|376839	pfam02589, LUD_dom, LUD domain. This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate.	3.25008e-55
CP016102.1\|AXU46074.1\|1687799_1688714_+\|transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.73137e-11
CP016102.1\|AXU46067.1\|1679524_1680343_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133409	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	3.2764e-41
CP016102.1\|AXU46065.1\|1673859_1674756_-\|NADP-oxidoreductase,-coenzyme-F420-dependent	gnl\|CDD\|378484	pfam10728, DUF2520, Domain of unknown function (DUF2520). This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases.	6.5429e-41
CP016102.1\|AXU46070.1\|1683175_1683616_-\|acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	2.14803e-35
CP016102.1\|AXU46061.1\|1670117_1671032_-\|hypothetical-protein	gnl\|CDD\|378573	pfam11155, DUF2935, Domain of unknown function (DUF2935). This family of proteins with unknown function appears to be restricted to Firmicutes. The structure of this protein has been solved and each domain is composed of four alpha helices. A metal cluster composed of iron and magnesium lies between the two domains.	1.40998e-33
CP016102.1\|AXU46063.1\|1672190_1673039_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	1.84322e-163
CP016102.1\|AXU46066.1\|1675435_1677529_+\|signaling-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.23427e-88
CP016102.1\|AXU46057.1\|1666703_1667288_+\|thioredoxin	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.05008e-17

>CP016102.1|AXU46066.1|1675435_1677529_+|signaling-protein
MNKRNFEVILNQLQINIYVTNIHTNEIIFMNKKMKEEYNILDPEGKVCWQVLYPEQNSTCSFCKVLELLKNDKKGVLIKWYEKCNKLNRAFENYDSLITWQDGTVVHMHQSIDIANSTILNKAIKINEFNEISNTKEEKGVFNFSRDNFDYNSTLLYDALIRGTDEYIYICNMKTGVFRYSPSQVELFDLPGEIVENPLIYWEKIVHPEDWNRFYKSNTEIGKNQMDYHTVEFRAKNRSGEYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKIDSLTQLLNYHEFMSVFEDKISNPMIEKLCIVLLNIDDFKNVNEMYDRDFGDNIIKTLAQSIQSILPDNAELYKLDGDEMGILVDNVEENEILTLYDQIQNMIIHLQLWRKYGLNITISAGCVIYPKHGDTVKELYKCASYSLQYAKEHGKNRLVFFSQEILKNKMYSLEMMRDLKASINDDFRGFSLRFQPQVDTQSHKMIGVEVLLRWTNDKYKAISPLEFIPILEENDMINIVGAWVLRMALRTFRKWIDNYPFFKVSVNVSAVQILEDTFIKDIVKIIDDENFPYQNLVLELTESHTVQNLSILQSKFKALQDLGIYIAMDDFGTGYSSLEVLKFSPIDIVKIDRVFVKDILKSKFDATFIHFIVAICHDVGIKVCLEGVETQEEYDLVKQIKPDYIQGYLFGKPQTATEIFDLLKLDN
>CP016102.1|AXU46065.1|1673859_1674756_-|NADP-oxidoreductase,-coenzyme-F420-dependent
MANYFLSKGHCVSGFYGRNQLSLLESTNLTKTKIYSNLKDIIYENDILFITTSDDSIEIIDKKLSKFNLKHKYICHTSGSLKSSILFCSKKAGALIYSIHPIFAFSNKNTDIKKMKDICFSIEGDNEQDDLVVQNFIDGLGNHFFIRDKDTSSTYHLANVLVSNLVLSLLDIGVSYFIKLGLSEDESLKAISPLVKKNIENILDNGFTKALTGPVSRGDITPIKKHLSVLDKKDEEIYKILSLNLLKIIALGNDNSLKCTKNITIENAIENLISKSEKYKEIYKLLGGKNDEKYHTNF
>CP016102.1|AXU46064.1|1673057_1673885_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKNTIQTFKNAKYEGKKLSMLTAYDYSIAKIMDECDINGILIGDSLGMVIKGEENTLSVTIDEIIYHTKAVKNGVKNALIVSDMPFLSYHVSIEDAVKNAGRLIKEGGAHAVKLEGGSNVIKQIENIVNAQIPVMGHLGLTPQSVNSFGGFKVQGNTSETAKQLIEDAKLIEKAGAFSIVLEGVPAKIAEMVTNSISIPTIGIGAGINCDGQILVYQDMLGMFGDFVPKFVKQYANIGDIMKDSIKNYILEVKTGAFPQEKHSFSINESELEKLY
>CP016102.1|AXU46063.1|1672190_1673039_-|pantoate--beta-alanine-ligase
MLVKEIKLLRNIIKDWRKDGYSIGLVTTMGFLHEGHQSLIKKAVKENDKVVVSVFVNPTQFGPNEDFNSYPRDIDKDFKYCMDSGATVVFNPSPEEMYLKGNCTTINVSGLTDFLCGAKRPVHFGGVCLVVSKFLNIVTPDKAYFGEKDAQQLAVIKRMVKDLNIDTEIIGCPIIRENDGLAKSSRNTYLSEEERKSALILNKSLSLAKEELVKGNLNPKNIKELIIAKINSEHLAKIDYVEIVDSETLQPVKQIEHSILVAIAVFIGKTRLIDNFTFELNI
>CP016102.1|AXU46062.1|1671597_1671780_-|hypothetical-protein
MFKDKIDECVHIMTAYIASLKEYYSFIETQIGDFIKKYGEDIVELCLHRVMILLCECGLA
>CP016102.1|AXU46061.1|1670117_1671032_-|hypothetical-protein
MIDNQKYVILSLELHLFFSRIMKEHALFLEAGFTNKNYNLAMEADHYKKQFEDLLSYAVSASNGIIRPDILYSEELVTTLTSAAEQKTEEFTGIEINKNITTRELNLQSGVDPQVGQDLVNYVAQLNSDAIRLLDGLINFKERVLDGVLSCTIFTSNYPLLLEHIIHEANLYRSYVVDLENKIDIESKSAKEIELFWDHIMMEHALFMRGLLDPSEGELINTSNDFAIKFNELIEKTNEMTDSNIKNITEETLNETVEFKDFKEAGASGIEQCKIKSIILPLLADHVLREANHYIRILESYKNM
>CP016102.1|AXU46060.1|1669080_1669728_-|lactate-utilization-protein-B/C
MIRQTPLEKRYDKLGPHIVTALKKRYFDAYYCKTRNEALQQILDLIPQNHVVSWGGSETLKEMGVQTAVREKGFKVIDRDLAKTPEERTEIMRQALLCDTFLMSSNAISEDGQLFNIDGNGNRVAAMIFGPKNVIVVAGMNKIVKNIDDAIQRTRTIASPAVVQRFQDVNTPCYINGSCIDCTSPESICAYMVTTRISRPAKKIKVILVGENLGL
>CP016102.1|AXU46059.1|1668344_1668914_+|lipoprotein
MKKFIICIIMFAISVLVLAGCSNDNKIKNEVDSMFNAIKTQDADTVDKYFPKSGLGNLIYEDKEGFKMYSKNMTWEISDIKNNKDKVTVDLKINNTDMVSILKKNPPKLGEMMPNPTMKDIDSAKKKEFNITLELVKTGDNYVCKVNQESAMKLLNVITGGGIDYLADYNKDYYKQLDEEQKNYENKNS
>CP016102.1|AXU46058.1|1667440_1668340_+|iron-sulfur-cluster-binding-protein
MKLLSKINNNIRLITQVAFTALTNGYVNGFLEGTIYGGESKKLCVPGLNCYSCPGALGACPIGSLQAVLSSREYKFSFYVVGFLMAFGAFFGRFVCGWLCPFGLVQDLLHKIPFPVKIKKVYGDKYLKYLKYIVLIMFVIILPVAVVNVAGGGNPWFCKWICPSGTLLGGIPLILGNENLRESIGFLFSWKLSILLLILLMSIITYRPFCKYICPLGAIYGFFNPISIYRFKIDKDKCTNCTACQTKCKLDIPIYKDVNSSDCIRCGECIKVCPQNAITTTFSKDKKENNICAKKYRGI
>CP016102.1|AXU46057.1|1666703_1667288_+|thioredoxin
MKKFFMVVLGCVFVLGMISGCSKKESKPVEKNKNNSEWFSNLDTEDVDGNKVTKEIFSNKELTLINVWTTWCGPCVGEMPELEALSKEYESNNSNVAIKGLVVEVDKTDMRTGLSNEEKNLVKDIMKKSDATYQQLTVSEELKKTDFKRVMEFPTTYFVDKKGNFVGEKVVGANSKEDWKKIIDERLKMVKTNE
>CP016102.1|AXU46067.1|1679524_1680343_+|MerR-family-transcriptional-regulator
MEKQYFTTGEFAKLCGISKQTLIFYDKIGIFSPEYKDKNNYRYYSVYQYDTLDILQSLREIGMSLEEIKEYIQNRTPQLCVKMLKEEEKKIREKIKKLRKISSKMQNRISITVEGISKMNSEEIYISKKFEEYLVLSSDLSNMSNSDFMMELIDFTNYCKSKNLYQGYELGVIVSNENIKNGDYLSISSFYLKIDKKIKDKKLYVKPEGMYACIKHIGKYEDSYKSYEKLKKYIYENEYKIIGNSYEESILDFFCESNEDNYMTEISIQVSR
>CP016102.1|AXU46068.1|1680475_1682596_-|ferrous-ion-transport-protein
MGLTHNSTKMSSLKDMFDIDNKEDQFIIALAGNPNTGKSTVFNHLTGLRQHTGNWPGKTVATARGNFKYKNTEYALIDLPGTYSLFALSQEEIVARDFICFGNPDAVIVVCDATCLERNLNLVFQVMELTDKVILCINLIDEARKKGITIDKKLLEDSLGIPVILTAARNGSGMDELLDTLNDVSFDKYKLNNKPVRYNENIEDVVKSIQPELDNIIPGINSRWLGLRLIDGDESIFESMSNYIDKDSIDAINEVKKKIPDNINKQKIRDEFTKINYDYAKKLSDECCSNVAKKSTDREEKVDKILTSKIFGLPIMLLLLGTILWITIEGANYPSTLLSNLLLGFEPSISGILNSINCPSWLNDMLVLGLYRTLAWVISVMLPPMAIFFPLFTLLEDFGYLPRVAFNLDHLFKKACAHGKQCLTMCMGFGCNAAGVIGCRIIDSPRERLIAILTNNFVPCNGRFPTLIAISTIFFSSVITNSFVSSVATALCITLLIILGVIITLLVSYTLSKTLLKGVPSTFTLELPPYRVPQIGRTLYTSIIDRTIFVLGRAVMVAIPAGVITWIFANIYIGDLSILSHVANFLDPLAKLIGLDGFILLAFILGFPANEIVVPILLMAYLATGSMIELDSFSALGQVLREHGWTYLTALNVMLFSLLHWPCATTLLTIKKETGSLKWTALGFLMPTILAFVVCFLTTTVYNLFI
>CP016102.1|AXU46069.1|1682621_1682849_-|ferrous-ion-transport-protein
MKNLNDIQVKKTVKVEDILSSGNLRERMLALGLTRGAVIDVVRKGPKNNLTVYKIRGSKIALRQEESSLILVSDI
>CP016102.1|AXU46070.1|1683175_1683616_-|acetyltransferase
MFKIKHFNDLSLDEFYEIAKSRYEVFACEQKIFSLNDYDDIDKSSYHIFLKENGLICAYARIIPKEYSSYNDVSIGRVLVLSSHRRKGLAKQMMDCAIDFIKVNLHENNITLSAQTYIKNLYLSCGFKEISEVYDEAGIEHIKMRL
>CP016102.1|AXU46071.1|1683788_1684757_+|hypothetical-protein
MNTTKKLTEAALLSSLFIVVTIIAVSTGFGYAIYLDFIVPVFFCIICLKCDLKYTILSGITSLLIISLVLGNLGTAIWASQSVLLGIMCGYLINKPTMVMDDLVYGSVFGVIVMVFIDIYASTLIGYSFMKEFQGYSKWIYFNGYTNFIYYLMIALFPFGMVFCIYLLSLILGNKLHILDSNSLKKFLIFKNFRSLNQFLCCSKKAFYICVSYLAIFEVLKLWNVKVDSVYLKTIFISITYISVYFIIRDSCMSLQNFIIAKFRKLLYARILFLIIILLLFFIFDVTVISLIIINAFLNKKIDIRLSQSNIVNKQINLLIEK
>CP016102.1|AXU46072.1|1685233_1686442_+|tyrosyl-tRNA-synthetase
MKSIDEQMRIIMKGVDDLIDEKELREKLIKSEKEGKPMIVKLGLDPSAPDIHLGHTVVLRKMKQLQDLGHQIVIIIGDFTGKIGDPTGKSKARKALTTEQVLANAKTYEEQIFKVLDKEKTIVRFNSEWLAKLNFEDVIKLAATITVARMLEREDFKKRYEGQMPISVHEFFYPLMQAYDSIALEADIELGGTDQRFNLLMGRSLQREFGMESQIVIMMPLIEGLDGKEKMSKSLGNYIGIDEEAGIMYQKSMEIPDELIIKYYNLVTDVHPDEVNKIESQLKEGSVNPRDIKMNLAREIVTLYHGEESAREAEERFKSVFQKGQIPEDIQTIQVEEDGFDLIEVLVSNEIVKSKSEVRRLASQGGVKVNGEKVEDLSTIVKESELVVQIGKKKFVKIELVK
>CP016102.1|AXU46073.1|1686502_1687384_-|polysaccharide-deacetylase
MVKKRKKKTVTLTILVVIVIGIFSMAWADMSRKKEMKETQERLKAERLEKERIEKEKNEPIIGAKKEAVKEYGYDAKIVWDKLNKYDYSNNGEKIVFLTFDDGPSTTNTPQVLDILKRHGVRGTFFIKGDSLERKGANEILKRTFDEGNAIAHHSYTHDYKKLYPSRSLNLDTFVNELNKTDEAMKKALGKNFSSNVVRCPGGYMSWKNMEPLGNYLKEKNMASIDWNALNADAEGKKKNAQELFEHAKKSSEGKEMVVLLMHDTYGKQETVNALDQIITYFKDNGYQFKILI
>CP016102.1|AXU46074.1|1687799_1688714_+|transporter
MKKYFGEIGLIFIAIIWGSGFVATQFALDGGLTPLQIITLRFFLAAIIMNLLFFKQIRANMSKKLLKAGGVLGIFLFLAFTVQTIGLMYTTPSKNAFITAANVVIVPFIGFILYRRKLDKIGIISSLVALIGIGILSLEADFSINFGDFLTLICSFGFAFHIFFTSEFAKDNNPMALTAIQFTVAFLMSVVVQTFAGQLKMEAELSGYMGTMYLAVFSTTIGFLFQTICQKRVDGTRTAIILSTEAVFGTIFSIIILKELITAKLVIGSILIFVAIITAETKLSFLKSKKVKLKDSEESSLESI
>CP016102.1|AXU46075.1|1688936_1689482_+|ruberythrin
MKKFVCTVCGYIHEGDAAPAQCPVCKVGADKFEEMKGEMVWADEHRIGVAQGVDAEIIEGLRANFTGECTEVGMYLAMSRQADREGYPEVAEAYKRIAFEEAEHAAKFAELLGEFVVADTKENLRVRVDAEYGATDGKLKLAKRAKELGLDAIHDTVHEMCKDEARHGKAFLGLLNRHFGK
>CP016102.1|AXU46076.1|1689572_1690721_+|iron-sulfur-protein
MKSVSVRSCKTYNYEEVKLSIEKNLEDIGGIDKFVKKGSKVLIKPNLLMKKKPEEATTTHPMVVKVVCEKLLELNCDITIADSPGGPYNQSSLKSIYKASGIEEVANELSIKLNYDVSDVKIHSEKAHVLKYMDIIKPIVDSDYIINLCKLKTHIMATFTGGTKNLYGCIAGLKKAEIHYRFPTEELFCENVLLDICDYIKPTLTIMDGIVGMEGDGPSAGTTREIGVLLASQNPYAIDVVACKIISLLPNRVATIRGAIKRGYIQEDFSDIEILGEDIKDLIVKNYKVPNVSKDLRLFSVKLPKFLNEPISKLITPKPVVRFQDCIKCGKCKEACPASTIEIGTKGAIIDLSKCIRCYCCHELCPKKAIDVKRNFVFKYVK

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Crispr_ID: CP016102_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_8

1769659-1769953

Orphan

NA:I-A

Consensus_repeat	Method
GTTTTAGATTAACTATATGGAATGTAAAT	PILER-CR
GTTTTAGATTAACTATATGGAATGTAAA	CRISPRCasFinder
GTTTTAGATTAACTATATGGAATGTAAAT	CRT

4 spacers

The CRISPR arrays of CP016102_8

>merge|CP016102|8|1769659-1769953|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGATTAACTATATGGAATGTAAATTTATCTGCGTCTTCTGAAATAGCATACTCTTCAAGAGGTTTTAGATTAACTATATGGAATGTAAATGTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCTGTTTTAGATTAACTATATGGAATGTAAATCTTATTTATAGTTGGGAAAATGGTTATAAATGTGGTACGTTTTAGATTAACTATATGGAATGTAAAGCAACAAGAACAACAGTTGATTTTACCTTTTCTAGCCAACGTTTTATATTAACTATGTGGAGAAAAACT

>CP016102|8|2|1769659-1769885|PILER-CR
GTTTTAGATTAACTATATGGAATGTAAAT	TTATCTGCGTCTTCTGAAATAGCATACTCTTCAAGAG
GTTTTAGATTAACTATATGGAATGTAAAT	GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT
GTTTTAGATTAACTATATGGAATGTAAAT	CTTATTTATAGTTGGGAAAATGGTTATAAATGTGGTAC
GTTTTAGATTAACTATATGGAATGTAAAG

>CP016102|8|8|1769659-1769952|CRISPRCasFinder
GTTTTAGATTAACTATATGGAATGTAAA	TTTATCTGCGTCTTCTGAAATAGCATACTCTTCAAGAG
GTTTTAGATTAACTATATGGAATGTAAA	TGTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT
GTTTTAGATTAACTATATGGAATGTAAA	TCTTATTTATAGTTGGGAAAATGGTTATAAATGTGGTAC
GTTTTAGATTAACTATATGGAATGTAAA	GCAACAAGAACAACAGTTGATTTTACCTTTTCTAGCCAAC
GTTTTATATTAACTATGTGGAGAAAAAC

>CP016102|8|2|1769659-1769953|CRT
GTTTTAGATTAACTATATGGAATGTAAAT	TTATCTGCGTCTTCTGAAATAGCATACTCTTCAAGAG
GTTTTAGATTAACTATATGGAATGTAAAT	GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT
GTTTTAGATTAACTATATGGAATGTAAAT	CTTATTTATAGTTGGGAAAATGGTTATAAATGTGGTAC
GTTTTAGATTAACTATATGGAATGTAAAG	CAACAAGAACAACAGTTGATTTTACCTTTTCTAGCCAAC
GTTTTATATTAACTATGTGGAGAAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU46156.1\|1765925_1766111_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46163.1\|1771423_1772251_+\|prophage-antirepressor-related-protein	unknown	unknown	gnl\|CDD\|214989
CP016102.1\|AXU46162.1\|1771126_1771300_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46167.1\|1775924_1776626_+\|phage-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|236880
CP016102.1\|AXU46157.1\|1766111_1767422_+\|phage-protein	unknown	unknown	gnl\|CDD\|377435
CP016102.1\|AXU46151.1\|1764101_1764335_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274765
CP016102.1\|AXU46165.1\|1772906_1773467_+\|phage-protein	unknown	unknown	gnl\|CDD\|376345
CP016102.1\|AXU46169.1\|1778596_1778857_+\|phage-protein	unknown	unknown	gnl\|CDD\|378501
CP016102.1\|AXU46154.1\|1765086_1765512_+\|phage-protein	unknown	unknown	gnl\|CDD\|377415
CP016102.1\|AXU46161.1\|1770070_1770823_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378276
CP016102.1\|AXU46164.1\|1772299_1772476_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46158.1\|1767438_1767909_+\|phage-protein	unknown	unknown	gnl\|CDD\|378178
CP016102.1\|AXU46159.1\|1767980_1768421_+\|phage-protein	unknown	unknown	gnl\|CDD\|378084
CP016102.1\|AXU46166.1\|1773542_1775909_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|131723
CP016102.1\|AXU46155.1\|1765504_1765942_+\|phage-protein	unknown	unknown	unknown
CP016102.1\|AXU46152.1\|1764344_1764746_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46160.1\|1769263_1769368_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46170.1\|1778861_1779281_+\|phage-protein	unknown	unknown	gnl\|CDD\|378510
CP016102.1\|AXU46153.1\|1764739_1765087_+\|phage-protein	unknown	unknown	unknown
CP016102.1\|AXU46168.1\|1776618_1778583_+\|phage-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|366353

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU46170.1\|1778861_1779281_+\|phage-protein	gnl\|CDD\|378510	pfam10934, DUF2634, Protein of unknown function (DUF2634). Some members in this family of proteins are annotated as phage related, xkdS however currently there is no known function.	9.70876e-35
CP016102.1\|AXU46163.1\|1771423_1772251_+\|prophage-antirepressor-related-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	6.3415e-07
CP016102.1\|AXU46167.1\|1775924_1776626_+\|phage-cell-wall-hydrolase	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	1.75254e-11
CP016102.1\|AXU46157.1\|1766111_1767422_+\|phage-protein	gnl\|CDD\|377435	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain. This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	2.35314e-37
CP016102.1\|AXU46151.1\|1764101_1764335_+\|hypothetical-protein	gnl\|CDD\|274765	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	0.00102489
CP016102.1\|AXU46165.1\|1772906_1773467_+\|phage-protein	gnl\|CDD\|376345	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain.	0.00108923
CP016102.1\|AXU46169.1\|1778596_1778857_+\|phage-protein	gnl\|CDD\|378501	pfam10844, DUF2577, Protein of unknown function (DUF2577). This family of proteins has no known function.	6.31686e-18
CP016102.1\|AXU46154.1\|1765086_1765512_+\|phage-protein	gnl\|CDD\|377415	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component. This family of proteins is found in the caudovirales. It may be a tail component.	4.55311e-17
CP016102.1\|AXU46161.1\|1770070_1770823_+\|hypothetical-protein	gnl\|CDD\|378276	pfam09851, SHOCT, Short C-terminal domain.	2.60785e-05
CP016102.1\|AXU46158.1\|1767438_1767909_+\|phage-protein	gnl\|CDD\|378178	pfam09393, DUF2001, Phage tail tube protein. This is a family of phage tail tube proteins including protein XkdM from phage-like element PBSX protein whose structure adopts a beta barrel flanked with alpha helical regions.	2.40208e-57
CP016102.1\|AXU46159.1\|1767980_1768421_+\|phage-protein	gnl\|CDD\|378084	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC. This is a family of phage tail assembly chaperone proteins, TACs, from Gram-positive bacteriophages, in particular PBSX from Firmicutes.	8.20802e-57
CP016102.1\|AXU46166.1\|1773542_1775909_+\|phage-tail-tape-measure-protein	gnl\|CDD\|131723	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.	8.61899e-15
CP016102.1\|AXU46168.1\|1776618_1778583_+\|phage-cell-wall-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	3.03482e-33

>CP016102.1|AXU46160.1|1769263_1769368_+|hypothetical-protein
MIVFLLSILAGVISAYIYDKIKNHPDANKGDLKK
>CP016102.1|AXU46159.1|1767980_1768421_+|phage-protein
MSNLSAFLSQNAIKVDNVKYVASNRFLDKEGKPVEWELKVLSSEEDEALRRKCTKRVKVIGNNGKHTGQYTSEIDYNSYVAELCVASTVFPDLKDAELQNSYGVMGEAQLLKTMLTAGEYVNYTVKVNEVNGFDTSFEDKVEEAKN
>CP016102.1|AXU46158.1|1767438_1767909_+|phage-protein
MAQTINAKDTVSAKKAECFITIEGKRYNFMQAIDLEAKMEKNKSEVPILGRTTKGNKTTGSTNTGSATFHYNTSIFRELLYRYKETGEDIYFDIQVTNEDPTSAVGRQTVVLKDCNMDSGIITKFDADGEYLDEDMDFTFEDWELVEKFNLLAGME
>CP016102.1|AXU46157.1|1766111_1767422_+|phage-protein
MALGGGTFVTQNKVLPGAYINFVSATRATSSLSDRGIVAIPLELDWGIDEEVFQVTSDDFEKYSVKYFGYDYTHEKLKGLRDLFKNIRLGYFYKLNKGVKASCTIATAKYSGIRGNDLKVTVTTNIDDNAKFDVVTLLDNKKVDTQIAKVITDLQDNDYITWKKDATLEASAGLVFTGGTNGEAVTGAEYQAFLDKIESYSFNALGCLATTTEIKSLFVEFTKRMRDKVGAKFQTVLYKKSDADYEGVVSVENKIKDKDLVESSLIYWAAGAIAGCDINKSNTNKKYDGEFDVDVNYTQIQLEEALKTGKFIFHKVGDEVHVLEDINTFVSFTDDKNDDFSSNQSVRVLDQIANDIATLFNEKYLGKVPNDKAGRISFWNDVVKHHKELENIRAIEDFKTDDVSVELGNDKKTVIVSDAVKVINAMSKLYMTVSVS
>CP016102.1|AXU46156.1|1765925_1766111_+|hypothetical-protein
MINLSKTLSKEENYKFTKEQIVNSKRYVNRKDLLNAILKEDELYSFSEVEDMINNFMKGVS
>CP016102.1|AXU46155.1|1765504_1765942_+|phage-protein
MLNNIIDGISIKLDKTFGESYTIYSEDVEQGINEPCFFIVPLNPSKVSYPSGRTLKKNSFDVHYFPKSNDKSFEINEVAEMLLEELEYIEIDGDLVRGTNMNFEIVDNVLHFFVDYNYFTIKSNNTDKMDTVELFGGLKRGDKLE
>CP016102.1|AXU46154.1|1765086_1765512_+|phage-protein
MARWGSVDFREFKRVCKKVEKLTKIDLDKFCKDAARELAARLLGKVIRRTPVDTGFLREGWSGVAYARSLPVYKQGNNYIIEVVNPTEYASYVNFGHRTKDGKGWVKGQHFLTISEMELQSQVDKIIEKKLLILLKGVFDA
>CP016102.1|AXU46153.1|1764739_1765087_+|phage-protein
MVSKTRKAIEMLYRDKCTIVEYQPIKDPVTKRTNNKEVIVLENQPCKLSYKNIVSATEGKLAKLEQTIKLFISPDIEIKAGSKLIINDKEYVRSGESAIYPNHQEIILELFKDKA
>CP016102.1|AXU46152.1|1764344_1764746_+|hypothetical-protein
MENNIIDEIEKRLESFGYILKDGDKWLIGFVREKIENIIKLDCNIKTMPIELKEIEVDMIVGEFLFTKKNMGQLDIESINFEAVEKSISEGDTKVDFAIGSGSQTPEQRFDSLIAYLTTYGKNKILTFRCLRW
>CP016102.1|AXU46151.1|1764101_1764335_+|hypothetical-protein
MAQVRKLNRILTIEECKIDDFLEMGYDLIDETGKAVKYGKSLNVKDLIAENNILRSKVESLEEGNKQLKEKNKLTKK
>CP016102.1|AXU46161.1|1770070_1770823_+|hypothetical-protein
MGLFKKKEKEKGICIICGNEGNALKTVDNEFLCDECFEKCRGEIAVLGKGLKKLTSKEVMNAVELCRDNFGNFVKNTLIQIVYLGGHPLFNREEMICLLIRSDKIVVKAFGTGPVPIVDVFEVSYSDIKSVSIEKEEEVIRRYTATRIALFGPFALAMQKAELNKKEYLIIECNDFILSFDKNDEALATVYKNLIEYRKNNGIGNVSESEVEKNKITNPLEQIKTLKELLDMDAITQEEFDVKKKELLNL
>CP016102.1|AXU46162.1|1771126_1771300_+|hypothetical-protein
MSSKMGRPKVDNPKNIDVKVRFDENTHKKLLDYCEKENLTRTEAIRKGVDLLLEEDR
>CP016102.1|AXU46163.1|1771423_1772251_+|prophage-antirepressor-related-protein
MNNELMNFENNELGIKIRTIKYEDGSIGINAEDTAVGFGWCKIENKNGKEYKSVRWERMNEFCIEFGFDHKWAKDDYIPESLFYMLGMKAKNEIAVKFQTWLAVDVLPSIRQTGAYITNNANPKKLREKASEIEKLQLAYNSTSMLKELLDGAGFDNKSKLLTAKTLYKKAGIDLPIEIEEEESFFDTKQIASKLKIYSKSNKPAQLAVCEIIKKIKLEENEVKGVWETNGSWTGTVNKYTKSVIDKVRTWIEENNRPAKIEGEKKNFHVVYKIE
>CP016102.1|AXU46164.1|1772299_1772476_+|hypothetical-protein
MYENLLKEYNLKTDEDVEYFVKFATLLHKLKQDNEEKFQEYAEILRGILREQEERKNK
>CP016102.1|AXU46165.1|1772906_1773467_+|phage-protein
MFCSNCGAEITGVGKFCSSCGVAVETEIIEDNNIKSNDLIVDANGIEINMTEIYRKYRKEKVNAIKNVMEISGLNIKEAKKIVDSSFEELKINFIDDTMSNSEKEKIINTQNRKNNIEKAQQESVACCPKCGSTSLSAQKKGFGIGKAVAGATIAGGIGLVAGNLGAKKVRVTCLNCGKQFWAGKK
>CP016102.1|AXU46166.1|1773542_1775909_+|phage-tail-tape-measure-protein
MATIQTSIRIFDGMTPAFRHMTNAMNIVLSSFEQLQRTSSNAIDANSIRTAREELARAEAGFDRLEQQIREADEQQKRFNDDIRKGASSTDKLVENAKRLVATYIGLRSVGGLINLSDQMTSTNARLAMINDGQQSDGGLNKMIFQSAERARASYLDTAKIVSRVGMNAGKAFSSTKEIVAFAEQLNKKFVIAGATTEETNSALLQLTQGLGSGVLRGEELNAVFESAPNIIQSIADYLEVDIGKIRGMASEGMLTADIVKNSLLSAAEQTNAEFEKMPYTFGQIFTSIKNNAVMIFGVIQKKIEQSMSSKGFRTFIDNFIDSLYVLGAVAFSIFNGIINILGSPFFQAFVNAIIVGVSLIVQVLGWVITQALNITNVFAQNWSIIAPIVLGVAAAMLVYNNALLLSIANKVKDIALSAKTLAMNFAHIIAESYRAAALVASTIAQDGLNAAMAACPITWILYGIIAIVVAFFVAIAVINKFAGTSYSAIGIVAGALSGLTAFIINSVFFWINVFISFAEFFTNVLDHPVYSVKKLFFNLATAVLNNLISMTKGCDEFATNLANSIIDGINGALKAWNKFVDVLNKFGGLADKLGLGKADMVGHTKSITSTLQKAKGDLNKWLGAEPEGYKSFKQLEYKNVGDWAKNGYAFGQNLENKLKDAFDINKIAEKAKKDLGLDDLWDKKYGLGDGLGSAGLNSPLSDAAKGAKDTAGNTAKMAKTMDKSQEDLKYLRDIAEQEVINKYTGVNIKIDMNNTNNISKDTDLDGIVNVLTEKLNDAMVVSAEGVV
>CP016102.1|AXU46167.1|1775924_1776626_+|phage-cell-wall-hydrolase
MAYDFYLDGVQLPIPPPKLEIKVTNKNKTVDLINTGEVNILKKEGLSEISFEAEFTHNKLPFYRGTFRDVQFFLSKLELLKTDCKPFQFIVSRELGNKVLFNTNMKVSLEEYNIVEDAENASDTKVAIKLKQYRDYSTKKLVLATPEKTNYGRTPPPVMKPKEFRPDSSNKPNAKTYTVKAGDSLWSICQKQLGNGSLYKKVYELNKSMMDKANKGKKVPKYTIYKGQVLKLG
>CP016102.1|AXU46168.1|1776618_1778583_+|phage-cell-wall-hydrolase
MDDELVLANDRDVRLVIAHWEDFYEPVVLDGITWEIERRGTPSKLEFTIVMDDILEFCEGNSVRLYYKGVGIFYGYIFQKKRDKENHIKIVAYDQLRYFKNKDTYVYSNKTASELVKMLAKDFNLKYNVIEDTKYKLSRVEENKTLFDMILTALDDTLREKKEMYTLYDDFGRITLKNVASMKLDTVMNNDVIEDFDYNSSIDSDTYTKIKLVRDNEESGKRDVYIAQDSTHMRSWGILQMFETVDKNMNEAEIKQKCDILLKLYNKKTKSLSLKNALGDIRVRAGCLVPVFLNLGDIKLQNYMLVEKVKHTFENNSHFMDLTLVDGDEFASYSSSSYSSGNTNNKNEKQNGPAQSTTSKEDNDMINKLNKVFKNKLSNTGNIFVKYSNAYKVNAALMAAISIHETGNGSSSLCKNKNNFFGMKGMSFSSVDEGIKKGISNLSRNYIHTGRKTLERIRDKYAPLYDSPLNKDWVPGVGKFYKQITGSTYTSNNAGTGVGSNEEAEKNLKDTTYQVQNNNSNTLTNNNSKVSKVIQEAKNQLGKPYAWGGNGPKSFDCSGLMVWAFKRGAGINLPRVSADQSKDSRGKLLCNINDVKAGDLVFFKNEQGKVHHVGLYIGNDQYIHAPQTGDVVKISSLSGRQKKKHDFERARRFF
>CP016102.1|AXU46169.1|1778596_1778857_+|phage-protein
MSQELLQIIKKAAMDAVETSNPIQIAFGTIESVNPLVVKIEQKASFEESFLIQTDTFKKYTDKKIGDKLVLIRMQGGQQYLILDRM
>CP016102.1|AXU46170.1|1778861_1779281_+|phage-protein
MLPSDNLDYDIEDVSIINFDVRQEPSKTFKLNIEKNRVDGICDDVEALKQTIFLILNTERYEHLIYSRNYGVELNDLIGEPISYVIPELERRITEALIQDDRIENIDNFEFQNIKGKVQCRFSVHTKYGNIKAEKVVSV

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Crispr_ID: CP016102_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_9

1772553-1772778

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTATGTGGTATGTAAAT	CRT
TTTTATATTAACTATGTGGTATGTAAAT	CRISPRCasFinder

3 spacers

The CRISPR arrays of CP016102_9

>merge|CP016102|9|1772553-1772778|CRT,CRISPRCasFinder
GAATTATATTAACAATGTGGTATGTAAATAATGAATTTTGAGAATCTACATAGGATTGAACTACTAATTTTATATTAACTATGTGGTATGTAAATACTAAATTAGAGGTCGAGAAGGCTATTGAATCAAAAGGTTTTATATTAACTATGTGGTATGTAAATTACACATTTTCTCAAATTTGGACTTCAATTAAAAATGTTTTATATTAACTATGTGGACTTAAAAT

>CP016102|9|3|1772553-1772778|CRT
GAATTATATTAACAATGTGGTATGTAAAT	AATGAATTTTGAGAATCTACATAGGATTGAACTACTA
ATTTTATATTAACTATGTGGTATGTAAAT	ACTAAATTAGAGGTCGAGAAGGCTATTGAATCAAAAG
GTTTTATATTAACTATGTGGTATGTAAAT	TACACATTTTCTCAAATTTGGACTTCAATTAAAAAT
GTTTTATATTAACTATGTGGACTTAAAAT

>CP016102|9|9|1772554-1772778|CRISPRCasFinder
AATTATATTAACAATGTGGTATGTAAAT	AATGAATTTTGAGAATCTACATAGGATTGAACTACTAA
TTTTATATTAACTATGTGGTATGTAAAT	ACTAAATTAGAGGTCGAGAAGGCTATTGAATCAAAAGG
TTTTATATTAACTATGTGGTATGTAAAT	TACACATTTTCTCAAATTTGGACTTCAATTAAAAATG
TTTTATATTAACTATGTGGACTTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU46156.1\|1765925_1766111_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46163.1\|1771423_1772251_+\|prophage-antirepressor-related-protein	unknown	unknown	gnl\|CDD\|214989
CP016102.1\|AXU46173.1\|1780949_1781942_+\|phage-tail-fiber-protein	unknown	unknown	gnl\|CDD\|372197
CP016102.1\|AXU46162.1\|1771126_1771300_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46167.1\|1775924_1776626_+\|phage-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|236880
CP016102.1\|AXU46157.1\|1766111_1767422_+\|phage-protein	unknown	unknown	gnl\|CDD\|377435
CP016102.1\|AXU46170.1\|1778861_1779281_+\|phage-protein	unknown	unknown	gnl\|CDD\|378510
CP016102.1\|AXU46172.1\|1780320_1780938_+\|phage-protein	unknown	unknown	gnl\|CDD\|378379
CP016102.1\|AXU46165.1\|1772906_1773467_+\|phage-protein	unknown	unknown	gnl\|CDD\|376345
CP016102.1\|AXU46169.1\|1778596_1778857_+\|phage-protein	unknown	unknown	gnl\|CDD\|378501
CP016102.1\|AXU46171.1\|1779281_1780328_+\|phage-protein	unknown	unknown	gnl\|CDD\|377414
CP016102.1\|AXU46161.1\|1770070_1770823_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378276
CP016102.1\|AXU46164.1\|1772299_1772476_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46158.1\|1767438_1767909_+\|phage-protein	unknown	unknown	gnl\|CDD\|378178
CP016102.1\|AXU46159.1\|1767980_1768421_+\|phage-protein	unknown	unknown	gnl\|CDD\|378084
CP016102.1\|AXU46174.1\|1781958_1783671_+\|Glycine-rich-protein	unknown	unknown	gnl\|CDD\|372323
CP016102.1\|AXU46166.1\|1773542_1775909_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|131723
CP016102.1\|AXU46155.1\|1765504_1765942_+\|phage-protein	unknown	unknown	unknown
CP016102.1\|AXU46160.1\|1769263_1769368_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46168.1\|1776618_1778583_+\|phage-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|366353

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU46170.1\|1778861_1779281_+\|phage-protein	gnl\|CDD\|378510	pfam10934, DUF2634, Protein of unknown function (DUF2634). Some members in this family of proteins are annotated as phage related, xkdS however currently there is no known function.	9.70876e-35
CP016102.1\|AXU46163.1\|1771423_1772251_+\|prophage-antirepressor-related-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	6.3415e-07
CP016102.1\|AXU46173.1\|1780949_1781942_+\|phage-tail-fiber-protein	gnl\|CDD\|372197	pfam12571, DUF3751, Phage tail-collar fibre protein. This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.	8.61741e-59
CP016102.1\|AXU46167.1\|1775924_1776626_+\|phage-cell-wall-hydrolase	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	1.75254e-11
CP016102.1\|AXU46157.1\|1766111_1767422_+\|phage-protein	gnl\|CDD\|377435	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain. This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	2.35314e-37
CP016102.1\|AXU46172.1\|1780320_1780938_+\|phage-protein	gnl\|CDD\|378379	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313). Members of this family of proteins comprise various hypothetical and putative bacteriophage tail proteins.	1.41324e-41
CP016102.1\|AXU46165.1\|1772906_1773467_+\|phage-protein	gnl\|CDD\|376345	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain.	0.00108923
CP016102.1\|AXU46169.1\|1778596_1778857_+\|phage-protein	gnl\|CDD\|378501	pfam10844, DUF2577, Protein of unknown function (DUF2577). This family of proteins has no known function.	6.31686e-18
CP016102.1\|AXU46171.1\|1779281_1780328_+\|phage-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	1.80205e-50
CP016102.1\|AXU46161.1\|1770070_1770823_+\|hypothetical-protein	gnl\|CDD\|378276	pfam09851, SHOCT, Short C-terminal domain.	2.60785e-05
CP016102.1\|AXU46158.1\|1767438_1767909_+\|phage-protein	gnl\|CDD\|378178	pfam09393, DUF2001, Phage tail tube protein. This is a family of phage tail tube proteins including protein XkdM from phage-like element PBSX protein whose structure adopts a beta barrel flanked with alpha helical regions.	2.40208e-57
CP016102.1\|AXU46159.1\|1767980_1768421_+\|phage-protein	gnl\|CDD\|378084	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC. This is a family of phage tail assembly chaperone proteins, TACs, from Gram-positive bacteriophages, in particular PBSX from Firmicutes.	8.20802e-57
CP016102.1\|AXU46174.1\|1781958_1783671_+\|Glycine-rich-protein	gnl\|CDD\|372323	pfam12810, Gly_rich, Glycine rich protein. This family of proteins is greatly expanded in Trichomonas vaginalis. The proteins are composed of several glycine rich motifs interspersed through the sequence. Although many proteins have been annotated by similarity in the family these annotations given the biased composition of the sequences these are unlikely to be functionally relevant.	1.48109e-48
CP016102.1\|AXU46166.1\|1773542_1775909_+\|phage-tail-tape-measure-protein	gnl\|CDD\|131723	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.	8.61899e-15
CP016102.1\|AXU46168.1\|1776618_1778583_+\|phage-cell-wall-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	3.03482e-33

>CP016102.1|AXU46164.1|1772299_1772476_+|hypothetical-protein
MYENLLKEYNLKTDEDVEYFVKFATLLHKLKQDNEEKFQEYAEILRGILREQEERKNK
>CP016102.1|AXU46163.1|1771423_1772251_+|prophage-antirepressor-related-protein
MNNELMNFENNELGIKIRTIKYEDGSIGINAEDTAVGFGWCKIENKNGKEYKSVRWERMNEFCIEFGFDHKWAKDDYIPESLFYMLGMKAKNEIAVKFQTWLAVDVLPSIRQTGAYITNNANPKKLREKASEIEKLQLAYNSTSMLKELLDGAGFDNKSKLLTAKTLYKKAGIDLPIEIEEEESFFDTKQIASKLKIYSKSNKPAQLAVCEIIKKIKLEENEVKGVWETNGSWTGTVNKYTKSVIDKVRTWIEENNRPAKIEGEKKNFHVVYKIE
>CP016102.1|AXU46162.1|1771126_1771300_+|hypothetical-protein
MSSKMGRPKVDNPKNIDVKVRFDENTHKKLLDYCEKENLTRTEAIRKGVDLLLEEDR
>CP016102.1|AXU46161.1|1770070_1770823_+|hypothetical-protein
MGLFKKKEKEKGICIICGNEGNALKTVDNEFLCDECFEKCRGEIAVLGKGLKKLTSKEVMNAVELCRDNFGNFVKNTLIQIVYLGGHPLFNREEMICLLIRSDKIVVKAFGTGPVPIVDVFEVSYSDIKSVSIEKEEEVIRRYTATRIALFGPFALAMQKAELNKKEYLIIECNDFILSFDKNDEALATVYKNLIEYRKNNGIGNVSESEVEKNKITNPLEQIKTLKELLDMDAITQEEFDVKKKELLNL
>CP016102.1|AXU46160.1|1769263_1769368_+|hypothetical-protein
MIVFLLSILAGVISAYIYDKIKNHPDANKGDLKK
>CP016102.1|AXU46159.1|1767980_1768421_+|phage-protein
MSNLSAFLSQNAIKVDNVKYVASNRFLDKEGKPVEWELKVLSSEEDEALRRKCTKRVKVIGNNGKHTGQYTSEIDYNSYVAELCVASTVFPDLKDAELQNSYGVMGEAQLLKTMLTAGEYVNYTVKVNEVNGFDTSFEDKVEEAKN
>CP016102.1|AXU46158.1|1767438_1767909_+|phage-protein
MAQTINAKDTVSAKKAECFITIEGKRYNFMQAIDLEAKMEKNKSEVPILGRTTKGNKTTGSTNTGSATFHYNTSIFRELLYRYKETGEDIYFDIQVTNEDPTSAVGRQTVVLKDCNMDSGIITKFDADGEYLDEDMDFTFEDWELVEKFNLLAGME
>CP016102.1|AXU46157.1|1766111_1767422_+|phage-protein
MALGGGTFVTQNKVLPGAYINFVSATRATSSLSDRGIVAIPLELDWGIDEEVFQVTSDDFEKYSVKYFGYDYTHEKLKGLRDLFKNIRLGYFYKLNKGVKASCTIATAKYSGIRGNDLKVTVTTNIDDNAKFDVVTLLDNKKVDTQIAKVITDLQDNDYITWKKDATLEASAGLVFTGGTNGEAVTGAEYQAFLDKIESYSFNALGCLATTTEIKSLFVEFTKRMRDKVGAKFQTVLYKKSDADYEGVVSVENKIKDKDLVESSLIYWAAGAIAGCDINKSNTNKKYDGEFDVDVNYTQIQLEEALKTGKFIFHKVGDEVHVLEDINTFVSFTDDKNDDFSSNQSVRVLDQIANDIATLFNEKYLGKVPNDKAGRISFWNDVVKHHKELENIRAIEDFKTDDVSVELGNDKKTVIVSDAVKVINAMSKLYMTVSVS
>CP016102.1|AXU46156.1|1765925_1766111_+|hypothetical-protein
MINLSKTLSKEENYKFTKEQIVNSKRYVNRKDLLNAILKEDELYSFSEVEDMINNFMKGVS
>CP016102.1|AXU46155.1|1765504_1765942_+|phage-protein
MLNNIIDGISIKLDKTFGESYTIYSEDVEQGINEPCFFIVPLNPSKVSYPSGRTLKKNSFDVHYFPKSNDKSFEINEVAEMLLEELEYIEIDGDLVRGTNMNFEIVDNVLHFFVDYNYFTIKSNNTDKMDTVELFGGLKRGDKLE
>CP016102.1|AXU46165.1|1772906_1773467_+|phage-protein
MFCSNCGAEITGVGKFCSSCGVAVETEIIEDNNIKSNDLIVDANGIEINMTEIYRKYRKEKVNAIKNVMEISGLNIKEAKKIVDSSFEELKINFIDDTMSNSEKEKIINTQNRKNNIEKAQQESVACCPKCGSTSLSAQKKGFGIGKAVAGATIAGGIGLVAGNLGAKKVRVTCLNCGKQFWAGKK
>CP016102.1|AXU46166.1|1773542_1775909_+|phage-tail-tape-measure-protein
MATIQTSIRIFDGMTPAFRHMTNAMNIVLSSFEQLQRTSSNAIDANSIRTAREELARAEAGFDRLEQQIREADEQQKRFNDDIRKGASSTDKLVENAKRLVATYIGLRSVGGLINLSDQMTSTNARLAMINDGQQSDGGLNKMIFQSAERARASYLDTAKIVSRVGMNAGKAFSSTKEIVAFAEQLNKKFVIAGATTEETNSALLQLTQGLGSGVLRGEELNAVFESAPNIIQSIADYLEVDIGKIRGMASEGMLTADIVKNSLLSAAEQTNAEFEKMPYTFGQIFTSIKNNAVMIFGVIQKKIEQSMSSKGFRTFIDNFIDSLYVLGAVAFSIFNGIINILGSPFFQAFVNAIIVGVSLIVQVLGWVITQALNITNVFAQNWSIIAPIVLGVAAAMLVYNNALLLSIANKVKDIALSAKTLAMNFAHIIAESYRAAALVASTIAQDGLNAAMAACPITWILYGIIAIVVAFFVAIAVINKFAGTSYSAIGIVAGALSGLTAFIINSVFFWINVFISFAEFFTNVLDHPVYSVKKLFFNLATAVLNNLISMTKGCDEFATNLANSIIDGINGALKAWNKFVDVLNKFGGLADKLGLGKADMVGHTKSITSTLQKAKGDLNKWLGAEPEGYKSFKQLEYKNVGDWAKNGYAFGQNLENKLKDAFDINKIAEKAKKDLGLDDLWDKKYGLGDGLGSAGLNSPLSDAAKGAKDTAGNTAKMAKTMDKSQEDLKYLRDIAEQEVINKYTGVNIKIDMNNTNNISKDTDLDGIVNVLTEKLNDAMVVSAEGVV
>CP016102.1|AXU46167.1|1775924_1776626_+|phage-cell-wall-hydrolase
MAYDFYLDGVQLPIPPPKLEIKVTNKNKTVDLINTGEVNILKKEGLSEISFEAEFTHNKLPFYRGTFRDVQFFLSKLELLKTDCKPFQFIVSRELGNKVLFNTNMKVSLEEYNIVEDAENASDTKVAIKLKQYRDYSTKKLVLATPEKTNYGRTPPPVMKPKEFRPDSSNKPNAKTYTVKAGDSLWSICQKQLGNGSLYKKVYELNKSMMDKANKGKKVPKYTIYKGQVLKLG
>CP016102.1|AXU46168.1|1776618_1778583_+|phage-cell-wall-hydrolase
MDDELVLANDRDVRLVIAHWEDFYEPVVLDGITWEIERRGTPSKLEFTIVMDDILEFCEGNSVRLYYKGVGIFYGYIFQKKRDKENHIKIVAYDQLRYFKNKDTYVYSNKTASELVKMLAKDFNLKYNVIEDTKYKLSRVEENKTLFDMILTALDDTLREKKEMYTLYDDFGRITLKNVASMKLDTVMNNDVIEDFDYNSSIDSDTYTKIKLVRDNEESGKRDVYIAQDSTHMRSWGILQMFETVDKNMNEAEIKQKCDILLKLYNKKTKSLSLKNALGDIRVRAGCLVPVFLNLGDIKLQNYMLVEKVKHTFENNSHFMDLTLVDGDEFASYSSSSYSSGNTNNKNEKQNGPAQSTTSKEDNDMINKLNKVFKNKLSNTGNIFVKYSNAYKVNAALMAAISIHETGNGSSSLCKNKNNFFGMKGMSFSSVDEGIKKGISNLSRNYIHTGRKTLERIRDKYAPLYDSPLNKDWVPGVGKFYKQITGSTYTSNNAGTGVGSNEEAEKNLKDTTYQVQNNNSNTLTNNNSKVSKVIQEAKNQLGKPYAWGGNGPKSFDCSGLMVWAFKRGAGINLPRVSADQSKDSRGKLLCNINDVKAGDLVFFKNEQGKVHHVGLYIGNDQYIHAPQTGDVVKISSLSGRQKKKHDFERARRFF
>CP016102.1|AXU46169.1|1778596_1778857_+|phage-protein
MSQELLQIIKKAAMDAVETSNPIQIAFGTIESVNPLVVKIEQKASFEESFLIQTDTFKKYTDKKIGDKLVLIRMQGGQQYLILDRM
>CP016102.1|AXU46170.1|1778861_1779281_+|phage-protein
MLPSDNLDYDIEDVSIINFDVRQEPSKTFKLNIEKNRVDGICDDVEALKQTIFLILNTERYEHLIYSRNYGVELNDLIGEPISYVIPELERRITEALIQDDRIENIDNFEFQNIKGKVQCRFSVHTKYGNIKAEKVVSV
>CP016102.1|AXU46171.1|1779281_1780328_+|phage-protein
MFELMTFENIIKRMLDSVPDTFDKREGSIIYNALAPVAIELTETYIAMDELLDQTFVDTASYYYLEKRCKERGITPLSATNTIAKGVFNIDIPLDSRFNLGEYNYIAIERISEKTYKMKCETAGPIFELGKLIPIEYIDGLETTELTEILINGEDEESEDSLRQRYYDSLNSQSFGGNIQNYKDEVNKLPDVGGVKVYPVWNGGGTVKLVIINSNFKVPSTDLVNLVQEEIDPNMKGEGLGLAPIGHRVTVEGVTSTTINISAEITYKSGYTWENIKSIAEEAIDDYLNELNMSWEDEENLIVRISQIETRLLSIDGVLDITNTMINEVKSNLTINSNSIVVRGEVVG
>CP016102.1|AXU46172.1|1780320_1780938_+|phage-protein
MDKEINLINYLPQILQDKEEYIKVFNVENKEIKTLHDKLKDLSNDQFLEDLTISGIKRWEKIMSITPKSNESLEDRRFRIFSKYISKLPYSERFLRNWLDNVVGEGNYELTINNATYNIHLESDARNQDWFEEVHSFVSNIKPCNMTLDYTRVLISKDNYMNFGITTLMGQEITIYPWSPPDIETYGEIDVLTGNGVGYQEITIF
>CP016102.1|AXU46173.1|1780949_1781942_+|phage-tail-fiber-protein
MAIDKSYYTIITDVGKAKIANASVTGNKVGFVKIQLGDGGGSEYTPTESQTALKNVVWEGNIGNTTTDETAPNCIILESLIPSSVGGFMIREIGYLDDENNLIAISKYKECYKPSIEQGAVVDMKVKTVLIVSNVNNIELKIDPTIIFATLKDIQDLETKIGTVNTKIDTTKTELTSNIETAKTELNTKIDQLIAGGSNVAYTQRVAIDDWVEDAESGFKATVTHSLLTHRIVVNIIDATTKENIVPNFKIVDDNSIEIRSEVKVELNVYVINGNAETHFINATVDDNRVSEMTTYSSKKIEDRLVNIEEKVNGGLSNIATSVNELITYC
>CP016102.1|AXU46174.1|1781958_1783671_+|Glycine-rich-protein
MQTEWNFNYANYVQNVSLPPGRYKLECWGACGGAVDTSDWTDCAKGGYSKGEIVFKKRTNLQICVGQSGYEKVSEGSSLTRSGFNGAGAAGKVTTGSFAYSKYGGGATDIRLYHPSATWGNTESLLSRILVAGGGGGMKNNFASARSIGHGGGYVGVNGVGRDRDFCGGGSQYQGGTSYDTEEYHGSLGKGGYGNIGIGGGGGWYGGAGSYSNECGGGGSGYALNKDSYKAPGYIPTPEYYLENIVMTTGGNTTKADGYAKITLLQALPFLTVSSYNSTQATFKADHTDPALLTKIEWFIDDVLKETITTNLTEEKTINYTLEDNALHTLKIVVTDSNNATAEKVLSISKNIMPLPENVNLNDISTKLVEVNAGFKVGKTSIINTLALKNIEASLNNTLVELSEKIKTSFDSSDTSVQDLQNQVTQKNNTITQLETELSKRKRFITGTYTFTKTDAENFNLSIYDKEGTSKTLTIPVNMGFSPSLIVLSGVTFSTTSKSYVYFDNVCNSNFYNFGYNSDSTHSNPKAVGILNVSNVGYSSLVLTLYKLSMSEAVGIWAKEGATLTYKIYI

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Crispr_ID: CP016102_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_10

1904103-1904522

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTATGTGGTATGTAAAT	PILER-CR
GTTTTATATTAACTATGTGGTATGTAAAT	CRISPRCasFinder
GTTTTATATTAACTATGTGGTATGTAAAT	CRT

6 spacers

The CRISPR arrays of CP016102_10

>merge|CP016102|10|1904103-1904522|PILER-CR,CRISPRCasFinder,CRT
GTTTTATATTAACTATGTGGTATGTAAATATTGTTTTACCTTCTAAAAGGTCACATATATTTATTGTTTTATATTAACTATGTGGTATGTAAATTCTATATCTGTTTCAAAATCTGTTATGAAATACTCCGTTTTATATTAACTATGTGGTATGTAAATAATAACTTATCTATGAAATTAAATACTGTAACTTGGTTTTATATTAACTATGTGGTATGTAAATTTGACCGACTTCATCAACTGCACCAGATTCTAATTCGTTTTATATTAACTATGTGGTATGTAAATTTTCAACAGTGGTGGTGGTCGAGGAGTAGAAGTTCTGTTTTATATTAACTATGTGGTATGTAAATTTTATAACCTTTAATTACACCTCCCATATCACCACCACGTTTTATATTAACTACGTGGTATGTAAAT

>CP016102|10|3|1904103-1904522|PILER-CR
GTTTTATATTAACTATGTGGTATGTAAAT	ATTGTTTTACCTTCTAAAAGGTCACATATATTTATT
GTTTTATATTAACTATGTGGTATGTAAAT	TCTATATCTGTTTCAAAATCTGTTATGAAATACTCC
GTTTTATATTAACTATGTGGTATGTAAAT	AATAACTTATCTATGAAATTAAATACTGTAACTTG
GTTTTATATTAACTATGTGGTATGTAAAT	TTGACCGACTTCATCAACTGCACCAGATTCTAATTC
GTTTTATATTAACTATGTGGTATGTAAAT	TTTCAACAGTGGTGGTGGTCGAGGAGTAGAAGTTCT
GTTTTATATTAACTATGTGGTATGTAAAT	TTTATAACCTTTAATTACACCTCCCATATCACCACCAC
GTTTTATATTAACTACGTGGTATGTAAAT

>CP016102|10|10|1904103-1904522|CRISPRCasFinder
GTTTTATATTAACTATGTGGTATGTAAAT	ATTGTTTTACCTTCTAAAAGGTCACATATATTTATT
GTTTTATATTAACTATGTGGTATGTAAAT	TCTATATCTGTTTCAAAATCTGTTATGAAATACTCC
GTTTTATATTAACTATGTGGTATGTAAAT	AATAACTTATCTATGAAATTAAATACTGTAACTTG
GTTTTATATTAACTATGTGGTATGTAAAT	TTGACCGACTTCATCAACTGCACCAGATTCTAATTC
GTTTTATATTAACTATGTGGTATGTAAAT	TTTCAACAGTGGTGGTGGTCGAGGAGTAGAAGTTCT
GTTTTATATTAACTATGTGGTATGTAAAT	TTTATAACCTTTAATTACACCTCCCATATCACCACCAC
GTTTTATATTAACTACGTGGTATGTAAAT

>CP016102|10|4|1904103-1904522|CRT
GTTTTATATTAACTATGTGGTATGTAAAT	ATTGTTTTACCTTCTAAAAGGTCACATATATTTATT
GTTTTATATTAACTATGTGGTATGTAAAT	TCTATATCTGTTTCAAAATCTGTTATGAAATACTCC
GTTTTATATTAACTATGTGGTATGTAAAT	AATAACTTATCTATGAAATTAAATACTGTAACTTG
GTTTTATATTAACTATGTGGTATGTAAAT	TTGACCGACTTCATCAACTGCACCAGATTCTAATTC
GTTTTATATTAACTATGTGGTATGTAAAT	TTTCAACAGTGGTGGTGGTCGAGGAGTAGAAGTTCT
GTTTTATATTAACTATGTGGTATGTAAAT	TTTATAACCTTTAATTACACCTCCCATATCACCACCAC
GTTTTATATTAACTACGTGGTATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU46281.1\|1904928_1905216_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46290.1\|1914274_1915048_+\|ABC-transporter-permease	unknown	unknown	unknown
CP016102.1\|AXU46277.1\|1896655_1898113_+\|glycine-dehydrogenase-subunit-2	unknown	unknown	gnl\|CDD\|235292
CP016102.1\|AXU46278.1\|1898535_1900893_+\|cation-transporting-ATPase	unknown	unknown	gnl\|CDD\|319795
CP016102.1\|AXU46283.1\|1905754_1906306_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339
CP016102.1\|AXU46282.1\|1905240_1905339_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46286.1\|1909915_1910500_+\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
CP016102.1\|AXU46288.1\|1912345_1913368_+\|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component	unknown	unknown	unknown
CP016102.1\|AXU46271.1\|1887343_1887943_-\|tellurium-resistance-protein	unknown	unknown	gnl\|CDD\|226595
CP016102.1\|AXU46276.1\|1894181_1896656_+\|bifunctional-glycine-dehydrogenase/aminomethyl-transferase-protein	unknown	unknown	gnl\|CDD\|234769
CP016102.1\|AXU46289.1\|1913381_1914269_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213231
CP016102.1\|AXU46287.1\|1911601_1911778_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU46274.1\|1890621_1892352_+\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|224671
CP016102.1\|AXU46272.1\|1888045_1888843_-\|lipoprotein	unknown	unknown	gnl\|CDD\|224381
CP016102.1\|AXU46284.1\|1906496_1907459_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|107204
CP016102.1\|AXU46280.1\|1902186_1903458_-\|guanine-deaminase	unknown	unknown	gnl\|CDD\|238628
CP016102.1\|AXU46285.1\|1907750_1909595_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176521
CP016102.1\|AXU46275.1\|1892876_1893392_+\|CF-9-family-membrane-protein	unknown	unknown	gnl\|CDD\|379370
CP016102.1\|AXU46273.1\|1889152_1890139_-\|lipoate-protein-ligase	unknown	unknown	gnl\|CDD\|161920
CP016102.1\|AXU46279.1\|1900978_1901296_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377724

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU46277.1\|1896655_1898113_+\|glycine-dehydrogenase-subunit-2	gnl\|CDD\|235292	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB.	0
CP016102.1\|AXU46278.1\|1898535_1900893_+\|cation-transporting-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
CP016102.1\|AXU46286.1\|1909915_1910500_+\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	8.21183e-95
CP016102.1\|AXU46271.1\|1887343_1887943_-\|tellurium-resistance-protein	gnl\|CDD\|226595	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only].	2.68958e-79
CP016102.1\|AXU46283.1\|1905754_1906306_-\|transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.67456e-17
CP016102.1\|AXU46289.1\|1913381_1914269_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213231	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.66751e-105
CP016102.1\|AXU46276.1\|1894181_1896656_+\|bifunctional-glycine-dehydrogenase/aminomethyl-transferase-protein	gnl\|CDD\|234769	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA.	0
CP016102.1\|AXU46274.1\|1890621_1892352_+\|Na+/H+-antiporter	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	1.25485e-57
CP016102.1\|AXU46272.1\|1888045_1888843_-\|lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	3.60305e-94
CP016102.1\|AXU46284.1\|1906496_1907459_+\|cysteine-synthase-A	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	4.52734e-108
CP016102.1\|AXU46280.1\|1902186_1903458_-\|guanine-deaminase	gnl\|CDD\|238628	cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.	1.97927e-169
CP016102.1\|AXU46285.1\|1907750_1909595_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176521	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.	5.58257e-93
CP016102.1\|AXU46275.1\|1892876_1893392_+\|CF-9-family-membrane-protein	gnl\|CDD\|379370	pfam13787, HXXEE, Protein of unknown function with HXXEE motif. This domain contains an HXXEE motif, another conserved histidine and a YXPG motif. Its function is unknown.	1.48924e-21
CP016102.1\|AXU46273.1\|1889152_1890139_-\|lipoate-protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	2.16968e-94
CP016102.1\|AXU46279.1\|1900978_1901296_-\|hypothetical-protein	gnl\|CDD\|377724	pfam06865, DUF1255, Protein of unknown function (DUF1255). This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.	2.10154e-53

>CP016102.1|AXU46280.1|1902186_1903458_-|guanine-deaminase
MLKVLKGNIIFTKTSETFTVFENSYIILEKGKVKGIFKEIPKEYKNLKVVDYTDKLIIPGMNDLHAHASQFKNLGMAMDKELLPWLETYTFPEESNYKDIEYATKMYKKFVKELWKSGTTRIAVFATVHKEASMKLMDIFKEVGLGAYVGKVNMNMNCPDTLLENTQDSIADTEEIINKYSDTDSIVKPIITPRFIPSCTSELLKGLGDLCLKYNIPIQSHLSENYDEIEWVRNLEPESKFYGDAYNRYNLFGQTPTLMAHCVHCSQDEIDLMRENNVMAVHCPASNFNVGSGAMPIRKLIDNNIRLALGSDISGGHTLSIFKAMVSAIQLSKLYWVNSGKKYNFLSLSEAFYIATKSGGSFFGKVGSFEEGYDFDALIIDDSNLNHDNYSILERLERFIYVGDDRNIIHRYVCGKLIEEPNI
>CP016102.1|AXU46279.1|1900978_1901296_-|hypothetical-protein
MNEFKNVTAVKKANVYFDGKVSSRVIILPNGERKTLGLMLPGEYTFSTREEEIMEMLAGSMDVKLPGSNEFVTYKEGQKFNVPSDSSFDLKVNEVVDYCCSYIAD
>CP016102.1|AXU46278.1|1898535_1900893_+|cation-transporting-ATPase
MDKVNLERYSCDINVGLNKNQLQSRIDDNLINAFENGKTKTYKQIFKDNIFTLFNLINIVLVCLLVSVGSFKNTLFIFIAVINTIIGVIQEIRAKRLLDNLSVIISNKVSVIREKEKKEIDVQELVLDDIMILKTGNQICADSKVLNGKLEVNESLVTGESDIIIKNKGDFLYSGSFVVSGEAFVRVENIGKDNYANKITNDAKISKKHNSQLRNSLNAILKIVGIIIIPLGIILFAKQHFGNGDSIATSVVGTVAAVNGMIPEGLTLLTSIALAVGTIKLASHKTLVQELYCVETLARVDTLCLDKTGTITEGKMQVDDIVMLEEVDINEIMGNICNSLKDDNATLNAIRDKYNVLDTYKAKNLIPFSSERKYSGVTFENKGTYLLGAFEFIFKEKNKKLRIEVERYSKKGNRVIVLAHSDSYMEDNNIPEDIKPLAFILILDKIRDEAKETLEFFYNEGVDIKIISGDNPITVSEVARKAGLKTASNFIDATTLKNDSDIYEAVDKYSVFGRVSPQQKKQMILALKKQNHTVAMTGDGVNDVLALKEADCSIAMASGSDVTKNVSNLVLLDSNFASMPKVVMEGRKVINNIQRASSLFLVKTIFSFFLSLLTLFFFSRQYPFVPIQLSLIGAVTVGIPSFFLALEANKSRISGNFLLNILKNALPGALCVTVNVIIVYNIVEYLGYSSSVFSTMCAILTGVCGLLILRQQCLPFNKERLFLIVSMTIAFVIGILFLGGLFSFVALSRELILITMALAILMPIMIKVMLFVLDEILETIVPDLN
>CP016102.1|AXU46277.1|1896655_1898113_+|glycine-dehydrogenase-subunit-2
MKEYNSLLIDISKKGRKAYSLPKLDIDDIKIEDMIDQDMARQSELNLPEVGELELVRHYTLLSNKNFGVDTGFYPLGSCTMKYNPKINEDMAALPNFTGMHPYQSSDTAQGSLSLMYDLSRRLAEITGMDEVTLQPSAGSHGEFTGLMIIKAYHENRGDHKRTKVIIPDSAHGTNPASAAMANFDVIQIASDKNGAVDINALKEVLNDEVAALMLTNPSTLGLFEKNIKEIATLVHEAGGLLYYDGANMNAIMGITRPGDMGFDVVHLNLHKTFSTPHGGGGPGAGPVGVKKELVPFLPIPIIERKEDKYVLNYDREKSIGKIKNFYGNFGVLVRAYTYILTMGRDGLKEASEMAVLNANYIKESIKDDYILPIDTLCKHEFVLGGLPRGEANIKTIDIAKRLLDYGYHPPTMYFPLIINEALMIEPTESESIETLDSFIEAMKSVAKEAKEEPELLKTAPHNTLVKRVDDARAVKKPILTWSQR
>CP016102.1|AXU46276.1|1894181_1896656_+|bifunctional-glycine-dehydrogenase/aminomethyl-transferase-protein
MNELKRVSLYNIHKELGAKLVEFAGWEMPLEYEGINKEHEMVRKSAGIFDVSHMGEVQIKGVESEKFIQNLVTNDISTLNINDIIYTPMCYENGGVVDDLLIYKFGEEEYLLVINAGNIDKDVAWIIKQSEGYNVDIKNISSEVSQLAIQGPKAEEILQKITDIDLNSIKFYKSIPSTKVCGCPCLVSRTGYTGEDGFEIYCKNKYVEIIWNEVLKVGGEDICPAGLGCRDTLRFEAALPLYGHEINEHISPIEGGLSIFVKTNKESFIGKSILSKEKESGAKRKLVGFEMQGKGMPRNGYDIRIGDKIVGFVTTGCASPTTGKILGMGIIDSEYAKVGNEIGIAIRKKVVPAVIVKKPFYKKQYKKDNIILNKENKFSYIPATSEDKSKMLKVVGLNSVDELFSDIPEEVKLKRDLNLEIGKSELEVSKIVKRLSEENLSLEDLTCFLGAGAYDHYIPSIIKHITSRSEFYTAYTPYQAEISQGTLQVVFEFQSMIAEITGMEIANASMYDGATAAIEACIMAINQTRKSKIVVSKTTHPETLSVLRTYLQYKDCEIVEIDFCNEYGTTDIEKLKASVDKDTACVLIQTPNFFGIIEEMEEIEKITHENKAMLIMSVDPISLGVLKTPGEIGADIVVGEAQSLGNPLNFGGPYVGFLASKSKYTRKMPGRIVGQSLDVEGKIAYVLTLQTREQHVRREKATSNICSNQALNALVASIYMATMGKEGFKEVGMQSMKKAHYTYNKLVQTGKYKPIFKGKFFKEFAVQGNLNIETINDKLLEENILGGYNLEYNYPELKNSTLLCVTEKRSKEEIDKLVGIMEGL
>CP016102.1|AXU46275.1|1892876_1893392_+|CF-9-family-membrane-protein
MEKYIWLFPLLFIFHDMEEIIGFGIWLKKNKSMLDKKYPFISKIYENYSTEGMAFAVFEEFILCIIFCILIVITDNQYVYLLWLGSFIAYTLHLVIHIGQSIIIRKYIPSLITSIICLPISIWCISKSIYIVDCEMSTTILYSIIGIIIVALNLKFAQSLIGKFTKWMSNI
>CP016102.1|AXU46274.1|1890621_1892352_+|Na+/H+-antiporter
MRNKKINIIFLTTIMFIMSTVMVFAEEDIDTIALANAEKFGILTLIPPLVAIILAFITKNVIISLLIGILSGSFIIKASGINVFATFIQAFLDLVDRALVSLADPWNAGIILQVLAIGGVINLVAKMGGAKAIAEALAKRAKSAKGTQLITWFLGLLVFFDDYANSLIVGPMMRPVADKMKISREKLAFIIDATAAPVAGLAIISTWIGLEVGLIHDAFESISIDVDAFGIFLNTIPFRFYNILILAFIVISALLLKEFGPMRKAEIKSRSRKISIDLDEGVAELDDLAPKNGVKLSVWNAIIPIGTLIIVALASFYYSGYTSIMGGDDKALIQLFTNSPYSFEAIKEAFSASDASRALFQSALVASLVAIIMAVVKKIFTISEAIDVWIDGMKSLVITGVILILAWSLSSVIKELGTAKFLIHLLSGSLPPFLLPSLIFGLGAIISFATGTAYGTMGILMPLAIPLAYSLNPDMSYVIVSTSAVLTGAIFGDHCSPISDTTILSSMGAGCNHIDHVNTQMPYAIFTAVITIVFGYIPAGLGLPIYIVLPVAIAAIFIGIQIIGKRVDEAEIELVE
>CP016102.1|AXU46273.1|1889152_1890139_-|lipoate-protein-ligase
MLLIYNEKTNPYFNLAMEEYLLKNFDEDLFILWRNEPSIIVGKNQNTLSEINLEYIKEYSIPVVRRQSGGGAVFHDLGNINFTFIACNNNNFSDFRRFTQPIIDLLKTLDVNAEFSGRNDLLIDGKKFSGNAQYNYKNKVMHHGTLLFSSEINDLSKALKVKPIKFEGKGIKSVKSRVTNISEHLHSKMDILEFKDAIMDYLSKTNTDNTNYCLSEHDIKQIEKLTKSKYETWDWNFGNSPKYTLSNELKYSGGNVEFNLNVDKGIITSIKFFGDFFGKCDVAFVENKLIGIKHEENALRNTLDSIEINDYFLGADTDILVSGILGVK
>CP016102.1|AXU46272.1|1888045_1888843_-|lipoprotein
MKFKKLLCLLLCLVLTLAVVGCSKAKDDKKIVVGATLVPGGELLEELKPLIKEKGYTLEVKNFDDYILPNEALNNGEIDANLFQHEPYLKEAVKAKGYKIMAGKKLYVCPAILYSYKIKSVDEFKKGDTIAISNNPSSCSKNLRYLESIGLLTLPKGYGLVSPKDIIENPKGIQFKELDIAQIPSSLPDVTAAFIDTTYAVPAGLDAKKNGIYTAPINDEYANLLAFRTEDKDSEKIKVLQDVLTSDKARSLIEEKYKGIVIPTF
>CP016102.1|AXU46271.1|1887343_1887943_-|tellurium-resistance-protein
MAIELKKGQKINLTKKENSNLGEILVNLNWNQKVQKKGFFGSLRSSNIDLDLGCLFEMKNGVKGAVQALGNAFGSLDNPPFAQLDGDDRTGSNTQGENLRINGNKIKDIKRILIYAFIYEGVANWSEADGIVTIKQKQDSDLVVKLDEHKNGYNMCSIALIENVNDETFSVEKVVKYFKGHREMDTEFHWGLKWVAGRK
>CP016102.1|AXU46281.1|1904928_1905216_+|hypothetical-protein
MKKILYALYSFIVIIANFRLKEKNYNFILLAIFFILLLIQNGVLKTGYQNRATFYQDNYFNGEDKSDKIKFMTIKIFIFLSLPLCFNILFNYLTS
>CP016102.1|AXU46282.1|1905240_1905339_+|hypothetical-protein
MIKVSLCVIYIKYKVHIVIKQKFHINEEKNIK
>CP016102.1|AXU46283.1|1905754_1906306_-|transcriptional-regulator
MSINTIIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSNPTVNTIWKIASGLNVPYTAILEQPQNETFIVSKTDIDVQVSENKDYRLYCYYPNTPTRNFELFQMELEEGHSYTSVGHSEKSQEYIMIIEGQLKLEVNDSIYQLRENDSICFSAESMHTYHNQGEKTLKAVIINYYPV
>CP016102.1|AXU46284.1|1906496_1907459_+|cysteine-synthase-A
MRVLNNVTEAIGNTHMLHLSKIADEFGVQGNIYAKMEYLNPGFSKKDRVALQMITEAENAGLLVPGQAVVELTSGNTGTGLAIACACKGYKFIACMSKGNSMERARMMKALGAEVVLVEQMPNSVHGQVSGEDLALVEIEAQKIAKERNAFRADQFNLDACNHAHEKYTAEEMWEQLDGNIDVFVDFLGSGSTFAGCSKTLKKHNSSIKCYVVEPETAAIYSGKEITDQGHKIQGGGYSMDLPLVDKKLIDGYIQVTDEEATDVARKLAKLEGVFAGFSSGANVCAAIKLLKSSEKGKNIVLTLNDSGLKYLSTDLYEEL
>CP016102.1|AXU46285.1|1907750_1909595_+|glycerophosphoryl-diester-phosphodiesterase
MQKRNLRNFIFTGKNILSKLVFIIKYNFSTLILFELFHKGLALFFIWPSIRYIFDILIKSLHIVYLNMDNFIKVLTNPISIVLIILSVIILAFYAFFELTSVIICFNKSIKYEKIGLFELFKISFKKSIKLLYPKNILLFIFVILIIPLVNTVLISGFIGKIQIPDYILDYIKSDIVLNIIYMIFLLIIYILVIRWIFSIHEITLNTENFKRARKESVNLIKGKIIRTIIYSLILSLVVAIIGYVIYHSGVIFIGIWTKYYTDMEFLKNIFINRCIAFEEYFRLILSIFIFILDIGFISATYYQYKGVSISKNNIKKEKKSISKIVFNLVLILLISYIESVAFSSHVNGMFNTSFSFYTTAIAHRAGAEMAPENTLAAIEEASHAKADYAEIDVQETKDGELIVLHDSNFKRTTGVDKNVWDVNYNEVKTYDAGSFYYYGKGYYDEKFVGEKIATLKEMIKYSKGKVKLLIEIKLNGHEKGDVVKKVVQLIKENNFENQCIVASMDKTILQKVKKLDENLLTCYFMAIAYGDFSKLNYVDIYGIESTFVNKTVVEKIHKMNKKIFVWTVNSDSLIEKMLDLNVDSIITDNPYLIESAIYWKKNGFISQVSDYLF
>CP016102.1|AXU46286.1|1909915_1910500_+|sugar-O-acetyltransferase
MTEREKMLAGELYDCGDIELLTQWHRAKDLVRDYNQTDSSDLEKKEKILNELLGGKGKNLWITAPYYVDYGNNIYFGNNCEVNMNCTFLDDNKIIIGDNVLIAPNVQIYTAFHPTNAGDRFGNAKEDGSFEFCKTQTAPVTIGDNVWIGGGAIIMPGVTIGDNVVIGAGSIVTKDIPSNMIAYGNPCRIIRENK
>CP016102.1|AXU46287.1|1911601_1911778_-|hypothetical-protein
MFIGEIDKCTHILTAYISSSYDYCNFLDTQLDDFISEYGETVVETCLHQVLLLVSRYN
>CP016102.1|AXU46288.1|1912345_1913368_+|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component
MVNWEIKKLAKSKSMFISLGILVLILIISIFITPVLETESYYIDKEKGRIEDTRSGIDIGNEKFQNKINVLKQFSNQTDTDEFSKKIELMSKKKLDNLSVNEYKDISFWKVFNYRVTNSLINVGMLIIISIIISNIYVDEVVTSVKDIILSSKEKKKALKSKIFVALLVPLVIYSVYLMGIFIITCMQQGVPVNGDLESFRVVDNVVALKTNLSITKYVILNIGIELLMFEGWAMIAVFGSFISKSSISSISFFIFIISITKIMSVIHILPKKLLSVISNVNYYDLIFGFNKIIGNYLGDIMIFKVNIDIVNIAIGLLMAILIGAISLCFLVIKSDYISR
>CP016102.1|AXU46289.1|1913381_1914269_+|ABC-transporter-ATP-binding-protein
MNKLEIEKLSKIYGKKVANDKITVTLENGVYGLLGPNGAGKSTLMKQITTLIKPDEGQILYNGEDIFKMDDDYRNILGYLPQEFGVYKNFTAKEFLQYIGALKGLRGKHLNIKIGELLDLVGLYDVRNKSIGKFSGGMKRRVGIAQVLLNDPKIIVLDEPTAGLDPQERARFRNLIAKMSRDKIIILSTHIISDIESVAKETIMIKDGKLLMKGTHKDILSHMENKVYNVQVKNECEVDDIQSKYKVVSIQSDIDSIVLRIVSEDIPCGANIQPVQAKFEDVYMFYFDLDDAREV
>CP016102.1|AXU46290.1|1914274_1915048_+|ABC-transporter-permease
MMYLVKAEMIKILKSKSVWIIWLFLLFFGFLLIRKFDVLDTYADIFYKIEGSIPLIGLIMFIITSGNYIKEYDSNMTGLINTTKKGKKSVVLSKLLANGLTLSIINISFILLLGIRGFSFFDFKNLNEPIHNLWYFGNSNLNLTVIQMYIIVILTTIFASFIFAQIGLTLSSIFKSAVIPFILGGLIIAIPYFSVGFIPDKAIKFMSLTPNWIMMSQQIVRYNVPSILIVFSIVISIILMIVLTKITYENFTSSKRF

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Crispr_ID: CP016102_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_11

2732254-2732414

Unclear

Consensus_repeat	Method
TGAAATCCACTTAGTTAATCTTAAAC	CRISPRCasFinder
TAGGTTTAAGATTAACTAAGTGGATTTCA	PILER-CR

2 spacers

cas3,cas5,cas7,cas6,c2c9_V-U4

The CRISPR arrays of CP016102_11

>merge|CP016102|11|2732254-2732414|CRISPRCasFinder,PILER-CR
AAAAATCCGATTAGTTAATTTTAAACCTAATAATAAAACTTCTATTATATCTACTATATCAATATTTGAAATCCACTTAGTTAATCTTAAACATACAAAATCTCCAACTTATAATTATTTTCGTGATGTACCTGAAACCCACTTAGTTAATCTTAAACCTC

>CP016102|11|11|2732254-2732411|CRISPRCasFinder
AAAAATCCGATTAGTTAATTTTAAAC	CTAATAATAAAACTTCTATTATATCTACTATATCAATATT
TGAAATCCACTTAGTTAATCTTAAAC	ATACAAAATCTCCAACTTATAATTATTTTCGTGATGTACC
TGAAACCCACTTAGTTAATCTTAAAC

>CP016102|11|4|2732256-2732414|PILER-CR
AAATCCGATTAGTTAATTTTAAACCTAAT	AATAAAACTTCTATTATATCTACTATATCAATATTTG
AAATCCACTTAGTTAATCTTAAACATACA	AAATCTCCAACTTATAATTATTTTCGTGATGTACCTG
AAACCCACTTAGTTAATCTTAAACCTC

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU47049.1\|2738306_2739044_-\|CRISPR-associated-Cas-family-protein	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
CP016102.1\|AXU47054.1\|2743262_2744636_-\|transporter	unknown	unknown	gnl\|CDD\|129794
CP016102.1\|AXU47040.1\|2728354_2728534_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP016102.1\|AXU47053.1\|2742307_2743075_+\|sugar-diacid-utilization-regulator	unknown	unknown	gnl\|CDD\|225306
CP016102.1\|AXU47048.1\|2736835_2738302_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU47047.1\|2735802_2736816_-\|CRISPR-associated-autoregulator,-Cst2-family	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
CP016102.1\|AXU47037.1\|2726517_2727081_-\|sigma-54-modulation-protein	unknown	unknown	gnl\|CDD\|238308
CP016102.1\|AXU47051.1\|2739852_2741016_+\|IS605-family-transposase-OrfB	c2c9_V-U4	-	gnl\|CDD\|223747
CP016102.1\|AXU47039.1\|2727881_2728325_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|370480
CP016102.1\|AXU47041.1\|2728696_2729047_-\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
CP016102.1\|AXU47035.1\|2724710_2726054_-\|stage-IV-sporulation-protein	unknown	unknown	gnl\|CDD\|377731
CP016102.1\|AXU47043.1\|2730389_2731148_-\|16S-ribosomal-RNA-methyltransferase-RsmE	unknown	unknown	gnl\|CDD\|236959
CP016102.1\|AXU47042.1\|2729089_2730388_-\|radical-SAM-superfamily-protein	unknown	unknown	gnl\|CDD\|223694
CP016102.1\|AXU47036.1\|2726066_2726303_-\|sporulation-protein-YqfC	unknown	unknown	gnl\|CDD\|377934
CP016102.1\|AXU47050.1\|2739357_2739816_+\|resolvase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225296
CP016102.1\|AXU47052.1\|2741168_2742278_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
CP016102.1\|AXU47046.1\|2734989_2735787_-\|CRISPR-associated-protein,-Cas5t-family	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
CP016102.1\|AXU47044.1\|2731166_2732114_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP016102.1\|AXU47045.1\|2732554_2734963_-\|ATP-dependent-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP016102.1\|AXU47038.1\|2727273_2727771_-\|sensory-protein	unknown	unknown	gnl\|CDD\|320706

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU47049.1\|2738306_2739044_-\|CRISPR-associated-Cas-family-protein	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	5.03192e-16
CP016102.1\|AXU47040.1\|2728354_2728534_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.30053e-12
CP016102.1\|AXU47053.1\|2742307_2743075_+\|sugar-diacid-utilization-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.02765e-15
CP016102.1\|AXU47054.1\|2743262_2744636_-\|transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.01533e-34
CP016102.1\|AXU47047.1\|2735802_2736816_-\|CRISPR-associated-autoregulator,-Cst2-family	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.28862e-18
CP016102.1\|AXU47037.1\|2726517_2727081_-\|sigma-54-modulation-protein	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	1.43831e-27
CP016102.1\|AXU47051.1\|2739852_2741016_+\|IS605-family-transposase-OrfB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.39282e-31
CP016102.1\|AXU47039.1\|2727881_2728325_-\|tRNA-binding-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	3.14843e-57
CP016102.1\|AXU47041.1\|2728696_2729047_-\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	1.77543e-54
CP016102.1\|AXU47035.1\|2724710_2726054_-\|stage-IV-sporulation-protein	gnl\|CDD\|377731	pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.	2.41878e-105
CP016102.1\|AXU47043.1\|2730389_2731148_-\|16S-ribosomal-RNA-methyltransferase-RsmE	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	7.40285e-85
CP016102.1\|AXU47042.1\|2729089_2730388_-\|radical-SAM-superfamily-protein	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	6.08201e-179
CP016102.1\|AXU47036.1\|2726066_2726303_-\|sporulation-protein-YqfC	gnl\|CDD\|377934	pfam07873, YabP, YabP family. This family of proteins is involved in spore coat assembly during the process of sporulation.	1.14572e-12
CP016102.1\|AXU47050.1\|2739357_2739816_+\|resolvase-domain-containing-protein	gnl\|CDD\|225296	COG2452, COG2452, Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair].	5.36942e-31
CP016102.1\|AXU47052.1\|2741168_2742278_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
CP016102.1\|AXU47046.1\|2734989_2735787_-\|CRISPR-associated-protein,-Cas5t-family	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	9.55327e-11
CP016102.1\|AXU47044.1\|2731166_2732114_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	5.49183e-110
CP016102.1\|AXU47045.1\|2732554_2734963_-\|ATP-dependent-helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.95142e-42
CP016102.1\|AXU47038.1\|2727273_2727771_-\|sensory-protein	gnl\|CDD\|320706	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family. This family contains tryptophan-rich translocator protein (TSPO), an integral membrane protein that is highly conserved from bacteria to mammals. In eukaryotes, it is mainly found in the outer mitochondrial membranes of steroid-synthesizing cells of the nervous system where it transports cholesterol into mitochondria. It is known to be highly expressed in metastatic cancer, steriodogenic tissues, as well as inflammatory and neurological diseases such as Alzheimer's and Parkinson's. TSPO is also known as the peripheral benzodiazepine receptor (MBR) and its ligands include benzodiazepine drugs, implicated in regulating apoptosis. In human, a single polymorphism A147T is associated with psychiatric disorders; the mutation causes structural changes in a region implicated in cholesterol binding. TSPO is homologous to bacterial tryptophan-rich sensory proteins, and their tryptophan residues are believed to be functionally important. In bacteria, TSPO acts as a negative regulator of expression of specific photosynthesis genes in response to oxygen/light; it catalyzes a photooxidative degradation of Proto porphyrine (PpIX). R. sphaeroides TSPO (RsTSPO) is involved in porphyrin transport, similar to human, while Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism.	1.41313e-43

>CP016102.1|AXU47044.1|2731166_2732114_-|50S-ribosomal-protein-L11-methyltransferase
MNNWIEVTIKTTTEAVEPITNILYEQGAGGAVIEDPKDFLFQKKNELDWDYVEEEVFKKNEEDDVLIKTYVSEEKNVMEFVEIIKQKVLGLKDFGIDIGEGSVSLDQVNEADWANAWKAYYKPTKVGQRVVVKPTWEDYAMQDGDLIIELDPGMAFGTGTHETTSMCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLENKVEKSVSVMHGNLTDVIKDKADVIVANIIADIIKILAKDVQNFMKEDAIFISSGIILDKVEEVKESLIENGFEIVEVQKLGEWSAIVSKLKR
>CP016102.1|AXU47043.1|2730389_2731148_-|16S-ribosomal-RNA-methyltransferase-RsmE
MDRFFVEKNNINLQDKTCTIEGEDVKHISKVLRCKLGEKLEICDKNNNEYICEIMNIDKSIVNLEILEKVDINRESELKVRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVVKVDDKKEDKKFERWERIIYEAAKQSKRGKIPKLRGVLSFKEALEDMKKNNVNICPYENERTVSIKHALKKCDSNIDSVGIFIGPEGGFSEEEIEQIQKNNCNVVSLGPRILRTETASVVASTIALYELSDLGGEK
>CP016102.1|AXU47042.1|2729089_2730388_-|radical-SAM-superfamily-protein
MKKVAFYTLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKKNPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVDDIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEVKKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTDEFVNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITTDVIVGFPGETNEEFKKTYEFLREIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQLLNLSKVNFNKFATKFIGRELDVLFEQNIEGNKYEGLTSNYIRVVVESDKNIQGQILKVKINDVKDEYVEGILL
>CP016102.1|AXU47041.1|2728696_2729047_-|histidine-triad-nucleotide-binding-protein
MDCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAGQN
>CP016102.1|AXU47040.1|2728354_2728534_-|30S-ribosomal-protein-S21
MSEVRVRENETLDSALRRFKRQCAMSGIMSEVRKREHYDKPSVKRKKKAEAARRKNAKK
>CP016102.1|AXU47039.1|2727881_2728325_-|tRNA-binding-protein
MSLKQKLQEDLKSSMKNKDTVRKSVVTLIRASIKQYEVDNRVELDEDGIIDVIAKQLKQRRDALVEFEKAGREDLIKETEGEIEVLKEYLPQQLSEEELEEIVKSTISEVGATSMKDMGKIMSVIQPKVKGRADGKLINKLVKQNLQ
>CP016102.1|AXU47038.1|2727273_2727771_-|sensory-protein
MIISVKEIRNFLINIFIPLIIGYLSSILTMIISGTDISTYYLQLTKPSFAPPAFIFPIVWTILYILMGISSYLILRKGYNLPKVRDAIFYYGLQLVLNFIWSILFFGFGLRFTALIDIIIMILVSIIMISKFSKIDKRSGYINLIYLMWLVYAGFLNYFIWFINK
>CP016102.1|AXU47037.1|2726517_2727081_-|sigma-54-modulation-protein
MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKSIRFENLDFIDNSSEFDDYDYDDEEDENIVIERRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDNFEINIVYKRKAGGYGLIEQD
>CP016102.1|AXU47036.1|2726066_2726303_-|sporulation-protein-YqfC
MLEISTDLQVNQPVITVTSNTFISIENYLSILEYEVDLIRIKTKVKTIKISGDKLSLKYITDSEIGIKGIIYNVEYVD
>CP016102.1|AXU47035.1|2724710_2726054_-|stage-IV-sporulation-protein
MISFIRGYYVIVVEGVGLEQFLNHLIRNGISVYNVTRIKNTKMEFHIDRQDIKEFKNVYRGSKFDIKVKQKTGVPFIIKRVYKHKGMWICALVSLFLLMSTSQFVTDVYIQSPEGIKKEALRNELYKVGVRPGVYKKSIDRKEVRDHMMSKFNDVAYLSINVKGTNIFVTVTKKAESLKSTDQSNYCNVIALKNGIIEKVIPRSGKSVIKSGDIVQKGDVLLNGANTKSIPEVWASTFYESTKKASYVDTVNKKTGEKKNIYTLSFYDKEFTMRKNIKYKDYVVENKEKKLSIGNYTFPIKIKTSTFYETKKVEVKKNKEELKKELSEKALKELEYIIPASARIIDVKHNFKVNKNMLEYLITVQTSENIAKIYPLSKSEAERFIKEESKPDEGEEEVPSNPEKRPLNDIRNEFDEDNKDNKDQNNSDENNSNQNSNNSQNNNSNNN
>CP016102.1|AXU47045.1|2732554_2734963_-|ATP-dependent-helicase
MKNIMQKEILAKSYNLRTNQQEQTLVEHIKDLFEVLESILELNLYSDKDVEILKICCVLHDLGKINSIMQQKMEINNKISYSCSEEERKKLESDKKSLKKIARHNIFSGAFLKDILEKMNLSEEDKLYIYKSIMLHHGNYEDYMRLSTSKVQEEIYEYIEKGILEKEEFNLKDIESYINDILNVDFKFDEDVLDYDYIDKLSESMFIDSDYNNGQIDDSVLNYRKFKYILYKGMLNLIDHSASSRQKGIKFYNDFTDEEIDNMILSEIYKSQGNLEKNNIKFNTIQKRLRELSGRNVLTVAFTGSGKTAADYRKTFKRKFFLVPNKISAESFYRKNIFQNKNDLDTRSSNDYIGLLHGDINLYSENEDNGEHDFVLTLRDIDLSINFCKPCVIATVDQLLLSMFKFPGYEKIFAAVKNASITVDEVHLLEPKMFLILIYFMQFACKYLDVDFHLMTATLPKSYKEQMINKGIIFQEESNENVTDKGEIVFIESNKEEEICEGKDVKVSFIKEKEIKSIVEDALENKQKILIIKNTIDSVNRTYEFLKENLSDKYGGVDIDVLHSRFKFKDKKEKYSKILNGEGDIWISTQSVEISLDLDFNIIISDLATMDSLIQRMGRCNRNNKYEYGNFYILPSEDKIYDNKLKNTTKSILNKIIKTNSIFTMGIRKIILADYYDNSVVKKYFEENFISCDKEIKNIYGINKEIFDGLDLIFNFEPYKNIVDSKKEAAKIFRDVDVSYKIILEEDFYKEDRELQQDSIQVSGFIFNRLYYYGLISKVEGYMVLKSSSKFEYNSTVGLILK
>CP016102.1|AXU47046.1|2734989_2735787_-|CRISPR-associated-protein,-Cas5t-family
MKVLQCKLKQPTAHYRDPKVFQNEYISTLNLPSKTTIMGMITYLCDRRLNSDIDIGIIGTHHHRELEFSRGENIDFWNEYTNMRKGKDKEKFLLKGNYYDYYKEHKAQNSILNYEVLKEVELTIFISCKDDEELEFIRKKLESPCKYANLGRKEDFVIPSEKGCFVKEVELKEVIPMNTRDAIKENIKLKNTYVRVDLRDKENVETIINQGVLIALPHKYKDLEANRDDRVYEFCHYIYVDNDGIYPKNIKVNVCIDTKEVFTWL
>CP016102.1|AXU47047.1|2735802_2736816_-|CRISPR-associated-autoregulator,-Cst2-family
MNEKRVKGVTLTILTESPVPLSYDQGYGNYTPIKKEQYREKIHAKTSIATITYDLRRKLHQEYGWNLSNIIFGKKGNIYPSIKKNVGCVDENGLETDVFGYLIPLKDKGSISKASPLRIIPFRSLNPYRGSTQLITNRGFLSSEFGRKYYDEKEENEVLRDENFPTTQALAIEETLSDYYVYTITLELDRIGVVEVEDGKLLLPEERKFMSKELREKAVKDILDAITVFTRNIKHSSVLLKPLAVMGGAFDKVVPFFWDDVDYNADSGEINLEGVIETIESYSLKESNTILAINDRLKISNKKELNRFNLSKYPVKEIKNLADRLEIGEDNMWYLKE
>CP016102.1|AXU47048.1|2736835_2738302_-|hypothetical-protein
MREIKAKFYRSGDIVRDIGIVYFYELLMDLKNELEKNDYKLKFTCELNRNYLSLESAEYIDPKYISDYILENQLFKVFKNGKKETLEKIFSNIDNLTYVNFIEELDKSSATEKQKEEIKKDFKNRRFPYVRNSGKYGLNTSLENMETNVKRIVNTVIKSNIEIDKLDLTQYEEKDSVCNVCNINKTTKLDIDLRERKDSKYNFLFRGAEKSGFKRSGQVESNICFECEFFNLMCLLYINLKRPMVFAYTNDLRELAFLNHKIMLKRKMYSDKSFYKKLLHEKISSIRLYRFDIDTNKGIILKFDSIIEYKELLKKIELIDIIDNYNFSREPGNTKNLGKKMIDNGNLSNLKELLLDNISVLKQSTGTSREMDFVSSSYNIGLYIKLCWIVDGGEEYKMKNYMESNLIYSRVGKDLFNKMTDESRRKNFSMKVIQLLKSNDRAQLFQTIMHVLVSNGILIGEGFVEGIMQSSELELNTNVGIFIQEIMK
>CP016102.1|AXU47049.1|2738306_2739044_-|CRISPR-associated-Cas-family-protein
MSRISIFMESCNGKFPNENSMLSVSFIKNILNAENKDFAKNIFNYGEERKNNKQIKDINTAIYIPNLIRSKNELLVDGDIIFNISFYNYSMFSKLYNGILKVKELEYKGYRFKIKNIKIHKEHEIKENGVIFKTMSPIIVKNKEGKYLDVEDSNYIECLNYIANLTLESIRGSGLRKPLEFIPLNFKKRVLKEKIRGFKVREYYYINAYAGTFFLKGNMEDLNALYKMGIGYRRTENAGMVDILK
>CP016102.1|AXU47050.1|2739357_2739816_+|resolvase-domain-containing-protein
MKNNNCKPKEFAELINISARTLQRWDIEGKLKAFRTPTDRRYYTYEQYLEYKGIHKEQVNRKNVIYTRVSISNQKDDLKNQVEFLKQYANAKGIIVDEVIEDYGSGLNYNRKKWNKLIDSCMTNEVNTIIVTHKDRFIRFGYDKYLVVAYMD
>CP016102.1|AXU47051.1|2739852_2741016_+|IS605-family-transposase-OrfB
MKRAYKIEINPTTEQKSKIHQTIGVSRFIYNFYIAHNKEVYDSKGEFISGMDFSKCLNNEYIPNNQDMKWIKDISFKATKQAIMNGDKAFKDFFKKTKGFPKFKKKKNQDVKAYFPKNNKTDWTIERHRVKIPTLGWVRLKEFGYIPINSIVKSGTVSQKSDRYYVSILVEEDDIQVSKCTNEGIGIDLGIKDFAICSNGSKFKNINKTSTVKKVEKKLKREQRKLSRKYESLKVRNKNIKEGVATRQNIQKQIVKVQKIHQRLANIRTDYINKTVSQVIEQKPSYITIEDLNVSGMMKNKHLSKAISSQKFFEFRTKLTAKCKQNNIELRVVDRWYPSSKTCSQCGEVNKGLKLKDRVYKCECGLSIDRDLNASINLKNAKKYKIA
>CP016102.1|AXU47052.1|2741168_2742278_+|ABC-transporter-ATP-binding-protein
MSEVILKNISKLYSNGFNAVKNINIDIKDKEFIVLVGPSGCGKSTTLRMIAGLEEISEGELYIGDKLVNDIEPKDRDIAMVFQNYALYPHLSVYENMAFALKLRKLPKDEIDKKVKEAAKILDLLPLLNKKPKTLSGGQRQRVALGRAIVRNPKVFLMDEPLSNLDAKLRTAMRTEITKLHQQLGTTFIYVTHDQVEAMTMADRIVVMKDGMVQQIATPQDVYDYPANIFVAGFIGAPQMNFIDVILIEENDEIYAQNEHIKLKLNKEKHYDLIKDNYINNEVVIGIRPEDIHVEDTFIKSNPDTCFKSRIEIKELMGAETYAHLKLGENTITIRFDSKNRINVGDDLTLSVDNSRIHIFDKETTLAIR
>CP016102.1|AXU47053.1|2742307_2743075_+|sugar-diacid-utilization-regulator
MEELKDFLERQLNKKINIYPYENQKLDASSHLVTFNNSIYVIDFLDKNNLDNLKGNFYLIYQPHIEFEYLKNIFYNLFEDINIIQHNGFFIVNSKYNLDINVTTQNIIETETYQSTYIFYLGKLDSKADFDFRLQLCSDLLPHIIKDNAENKFLNLFDLIRYKTLDLINEDNILNKLIDFNKIKSIDEELLYTGLKFINNDLNISKTSTSMFLHRNTLVYRLEKINEILGFDLKNFENAMIFYLSVKSYFLYKKI
>CP016102.1|AXU47054.1|2743262_2744636_-|transporter
MGKTNARRTLFLIAIGSGTMLNPLNSSMISLALHSIQNDFHISFTTVSWIVSAFYLASAIAQPVSGKIGDLIGRKVLFLSGLMLVILSASIVPLVQSFFILIFIRVIQAIGTSTLYPSGVALIQNNIKERQSSALAVLTIFASTTAGLGPTLGGLLLDLGGWHAIFLVNIPVVLVSICLGYFLFPKEVKEKKSIKETLKNVLSRLDIIGILLFSIAMIFILLFLLSMKESFNLEQLVFGIILMCLFIWHELRTKLPFIDIKLFVSNPKLSKVYLQFIILNFFNYILFFGLPSYFQDALHYSAKSTGLFMLFMSGIGIFISPLTGRWIDKSGTRFPLVTSSIFMFISAVLLSVVFIHIPVIGKGIILSLAGISYGVGNVALQSSMFEESPRDSIGTASGLFQTSRYLGSILATVLLGMVFEVNITSEQFQILGYVMVVLGTISFLLNFILKKELRKVE

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Crispr_ID: CP016102_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_12

2822003-2822421

Orphan

NA:I-A

Consensus_repeat	Method
ATTCCATATAGTNTAATATAAAAC	CRT
GTTTTATATTAACTATATGGAATGTAAATT	PILER-CR
ATTTACATTCCATATAGTTAATATAAAAC	CRISPRCasFinder

6 spacers

The CRISPR arrays of CP016102_12

>merge|CP016102|12|2822003-2822421|CRT,PILER-CR,CRISPRCasFinder
GTACACAGGTTTGAATATAAAAAAGCACCTACCACAAAAGTAAGTGTTTTTCAGTATTTTTAATTTTAAGTCCATATAGTTAATATAAAACCTTAAAGCTACATAATAAAAAATTAAGAAAAAGAAAAATTTACATTCCATATAGTTAATATAAAACGTTTGTGTATCCAAAATAATAGTATTATTGCAAATAGATTTACATTCCATATAGTTAATATAAAACTGTCTTATATACAGACATAGCTAAACTTGCAGTCGTATTTACATTCCATATAGTTAATATAAAACCATTCATAATCAAAAATGACAATACAGTATGGTCATGATTTACATTCCATATAGTTAATATAAAACTACATTATATAAGATAGCTAAAAATCTTTTAGGCAAATTTACATTCCATATAGTTAATATAAAAC

>CP016102|12|5|2822003-2822421|CRT
GTACACAGGTTTGAATATAAAAA	AGCACCTACCACAAAAGTAAGTGTTTTTCAGTATTTTTAATTTTA
AGTCCATATAGTTAATATAAAAC	CTTAAAGCTACATAATAAAAAATTAAGAAAAAGAAAAATTTAC
ATTCCATATAGTTAATATAAAAC	GTTTGTGTATCCAAAATAATAGTATTATTGCAAATAGATTTAC
ATTCCATATAGTTAATATAAAAC	TGTCTTATATACAGACATAGCTAAACTTGCAGTCGTATTTAC
ATTCCATATAGTTAATATAAAAC	CATTCATAATCAAAAATGACAATACAGTATGGTCATGATTTAC
ATTCCATATAGTTAATATAAAAC	TACATTATATAAGATAGCTAAAAATCTTTTAGGCAAATTTAC
ATTCCATATAGTTAATATAAAAC

>CP016102|12|5|2822064-2822225|PILER-CR
AATTTTAAGTCCATATAGTTAATATAAAAC	CTTAAAGCTACATAATAAAAAATTAAGAAAAAGAAA
AATTTACATTCCATATAGTTAATATAAAAC	GTTTGTGTATCCAAAATAATAGTATTATTGCAAATA
GATTTACATTCCATATAGTTAATATAAAAC

>CP016102|12|12|2822065-2822421|CRISPRCasFinder
ATTTTAAGTCCATATAGTTAATATAAAAC	CTTAAAGCTACATAATAAAAAATTAAGAAAAAGAAAA
ATTTACATTCCATATAGTTAATATAAAAC	GTTTGTGTATCCAAAATAATAGTATTATTGCAAATAG
ATTTACATTCCATATAGTTAATATAAAAC	TGTCTTATATACAGACATAGCTAAACTTGCAGTCGT
ATTTACATTCCATATAGTTAATATAAAAC	CATTCATAATCAAAAATGACAATACAGTATGGTCATG
ATTTACATTCCATATAGTTAATATAAAAC	TACATTATATAAGATAGCTAAAAATCTTTTAGGCAA
ATTTACATTCCATATAGTTAATATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU47117.1\|2819869_2820451_+\|accessory-genes-regulator	unknown	unknown	gnl\|CDD\|377395
CP016102.1\|AXU47115.1\|2817858_2818059_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
CP016102.1\|AXU47113.1\|2816693_2817077_-\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP016102.1\|AXU47129.1\|2832728_2833367_+\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|234646
CP016102.1\|AXU47124.1\|2826399_2827068_-\|vanZF-protein	unknown	unknown	gnl\|CDD\|377417
CP016102.1\|AXU47118.1\|2820468_2820630_+\|autoinducer-prepeptide	unknown	unknown	gnl\|CDD\|275064
CP016102.1\|AXU47121.1\|2822706_2822865_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU47116.1\|2818504_2819827_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340412
CP016102.1\|AXU47111.1\|2813764_2815393_+\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|163513
CP016102.1\|AXU47128.1\|2831763_2832453_-\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
CP016102.1\|AXU47119.1\|2820651_2821449_-\|phage-related-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|119407
CP016102.1\|AXU47126.1\|2830723_2831074_-\|iojap-family-protein	unknown	unknown	gnl\|CDD\|376779
CP016102.1\|AXU47127.1\|2831190_2831763_-\|metal-dependent-phosphohydrolase	unknown	unknown	gnl\|CDD\|224627
CP016102.1\|AXU47122.1\|2823222_2824593_-\|cell-surface-protein	unknown	unknown	gnl\|CDD\|380277
CP016102.1\|AXU47123.1\|2824991_2825414_+\|integrase	unknown	unknown	gnl\|CDD\|379665
CP016102.1\|AXU47125.1\|2827949_2830370_-\|leucyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234743
CP016102.1\|AXU47130.1\|2833519_2835523_+\|glycogen-branching-protein	unknown	unknown	gnl\|CDD\|215246
CP016102.1\|AXU47114.1\|2817456_2817633_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU47120.1\|2821445_2821706_-\|holin	unknown	unknown	gnl\|CDD\|379763
CP016102.1\|AXU47112.1\|2815513_2816509_+\|L-asparaginase	unknown	unknown	gnl\|CDD\|199208

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU47117.1\|2819869_2820451_+\|accessory-genes-regulator	gnl\|CDD\|377395	pfam04647, AgrB, Accessory gene regulator B. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein.	1.2276e-18
CP016102.1\|AXU47115.1\|2817858_2818059_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.41551e-31
CP016102.1\|AXU47113.1\|2816693_2817077_-\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	3.36102e-18
CP016102.1\|AXU47129.1\|2832728_2833367_+\|recombination-regulator-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	5.42744e-47
CP016102.1\|AXU47124.1\|2826399_2827068_-\|vanZF-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	5.76794e-18
CP016102.1\|AXU47118.1\|2820468_2820630_+\|autoinducer-prepeptide	gnl\|CDD\|275064	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide. Members of this family of short peptides are precursors to thiolactone (unless Cys is replaced by Ser) cyclic autoinducer peptides, used in quorum-sensing systems in Gram-positive bacteria. The best characterized is the AgrD precursor, processed by the AgrB protein. Nearby proteins regularly encountered include a histidine kinase and a response regulator. This model is related to pfam05931 but is newer and currently broader in scope.	2.77025e-09
CP016102.1\|AXU47116.1\|2818504_2819827_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|340412	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.	2.46738e-33
CP016102.1\|AXU47111.1\|2813764_2815393_+\|aspartate-aminotransferase	gnl\|CDD\|163513	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). [Energy metabolism, Amino acids and amines].	0
CP016102.1\|AXU47128.1\|2831763_2832453_-\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	9.36329e-79
CP016102.1\|AXU47119.1\|2820651_2821449_-\|phage-related-cell-wall-hydrolase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	7.07575e-32
CP016102.1\|AXU47127.1\|2831190_2831763_-\|metal-dependent-phosphohydrolase	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	4.17724e-52
CP016102.1\|AXU47122.1\|2823222_2824593_-\|cell-surface-protein	gnl\|CDD\|380277	NF033435, S-layer_Clost, S-layer protein SlpA. In Clostridiodes difficile, the S-layer protein precursor, SlpA, is one member of a large paralogous family of protein that share several cell wall-binding repeats. SlpA is cleaved into a larger and smaller protein. The S-layer protein itself is important to adhesion, and portions of it are highly variable, and then N-terminal and C-terminal are well-conserved.	2.18991e-18
CP016102.1\|AXU47123.1\|2824991_2825414_+\|integrase	gnl\|CDD\|379665	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain. This domain is found in a variety of phage integrase proteins.	3.221e-08
CP016102.1\|AXU47125.1\|2827949_2830370_-\|leucyl-tRNA-synthetase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
CP016102.1\|AXU47130.1\|2833519_2835523_+\|glycogen-branching-protein	gnl\|CDD\|215246	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme.	0
CP016102.1\|AXU47126.1\|2830723_2831074_-\|iojap-family-protein	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	7.43119e-49
CP016102.1\|AXU47120.1\|2821445_2821706_-\|holin	gnl\|CDD\|379763	pfam16079, Phage_holin_5_2, Phage holin family Hol44, in holin superfamily V. Phage_holin_V_2 is a family of small hydrophobic proteins with three transmembrane domains of the Hol44 family. These proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion. Full activity of the endolysin Lys44 from oenophage fOg44 requires sudden ion-nonspecific dissipation of the proton motive force, undertaken by the fOg44 holin during phage-infection.	5.01487e-15
CP016102.1\|AXU47112.1\|2815513_2816509_+\|L-asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	8.27962e-141

>CP016102.1|AXU47120.1|2821445_2821706_-|holin
MDNLISFIPEQLLLLVVALNVLGFGFKKYKQLDNKYISVILLALGIVFSIWMLGFNPSSILQGILCWGVAIGANQVYKQLKDGEKQ
>CP016102.1|AXU47119.1|2820651_2821449_-|phage-related-cell-wall-hydrolase
MKIAIVPGHTLSGKGTGATGYIDEGKENRILTDLIVKWLKQGGATVYTGKVDKSNNYLAEQCQIANKQNVDLAVQIHFNANKTTLNPMGTETICKTNNGKVYAERVNKKLSTIFKNRGAKSDVRGLYWLSHTKAPAILIEVCFVDSKADTDYYIRHKDIVAKLIAEGILNKKIDNDGVKLMYKHAIVYDGEVDKIPATVVGWGYNDGKILICDIKDYIPGQTENLYVVGGGACEKIGSMAKENYTLIKGNGRFDTLYKALDFIDR
>CP016102.1|AXU47118.1|2820468_2820630_+|autoinducer-prepeptide
MKKILYNFMKACGVLAMFVAFLSANTTSLWHVYQPKTPEKLKNSKNHQKEGNN
>CP016102.1|AXU47117.1|2819869_2820451_+|accessory-genes-regulator
MIKSCADKIAFLFVLNQVIEKDDLEICSYGLEILLSSIINTLSSLMIGLILGRLIYSIVFLISFCIIRQFSGGYHANSNKNCILIFNSIFFISMVLGTILNNSNPIPLFLVILSSFNFLIIFIFAPVCHTNNPLNETKYKKNKLLSRTISITLFLIILLGCKYLSFYNYVVYTFLALLWINLLLIIQIIINKK
>CP016102.1|AXU47116.1|2818504_2819827_+|two-component-sensor-histidine-kinase
MLDMFITIVSSIIEIWACKKVFDYTSKVKTSLINLYFLISTFIIISTFYTNVGADNRILICIFVMFVFYKSNYDVNIYKCLIVLFSYWAILVCINALSMIVIVSINNLSSMNILLNDNFYRYETIVLGNVVLIVLLCIYKFISNDLQVTKKEIYMCIPIVANMISFFIFYKYILKLLDISSATRLDILIMVLLLTFSNIVLISSLVKILKSNKKYIELTKLQEKINAENKYYSNIKKYYIKTKELNHDMKNHLICIKEMNKKNIDTSNYINNIEKKLDEYSAVFDTGNITLNIILLEKKELCIEKGIDFTININFSDCNFIKEEDTCSIFANALDNAIEACEKIKDDDKKIKLQGMVLNKFFVIKITNTKSNDILLKNNAFLTTKEDKEFHGLGIKSIKNSLEKYDGAISINFSENLFCLNMMIPIRKSQEDSNIAYENS
>CP016102.1|AXU47115.1|2817858_2818059_+|cold-shock-protein
MNNGIVKWFNNEKGFGFISMEGRDDVFAHFSAIQTSGFKSLEEGQQVSFDIVKGARGPQAENITIL
>CP016102.1|AXU47114.1|2817456_2817633_+|hypothetical-protein
MFGNKMDKCTHVLTAYISSSYDYCNFLDTQLDDFILEYGENIVESCLHQVMVLISKYN
>CP016102.1|AXU47113.1|2816693_2817077_-|regulatory-protein
MLNKKLPDIELKIMKYIWSTGYKTVISKDVADEIEKTYGWKHTTTITLLVRLTKKDFLISQRIGKHVHYRVLIKEREYLKIEGKRIFGGLHNNPLSELILKLHNEEEITEEKIIEIGSWIKSWKDED
>CP016102.1|AXU47112.1|2815513_2816509_+|L-asparaginase
MSIKKKVAIVFTGGTISMTVDDKVGAAIPTLSGEQILSMVTNIDKVADVEVFNFDEIPGPHITPYRMMELKNYVNDLLARKDITGVVITHGTDSLEETAYFLDLTIDNIKPVIVTGAMRSSSELGYDGSSNLSASVCTAVSKDAMGKGVLVVLNNEVLLASEATKTNTLSLNTFKSLTSGPLGIIDCNELVLTRDIVNRTIIDTDKVESKVALFKAYVGENADFIRFAVDSGYKGIVIEAMGRGNIPPQMLSGVEYAREKGLPVVIVSRCHSGRVFDSYGYFGSGRDLKNLGCIFGGDLPGQKARIKLILALGKTDNLDEIKDFFEKGIYC
>CP016102.1|AXU47111.1|2813764_2815393_+|aspartate-aminotransferase
MKNHTYKEIKNIYGKISPFEFKDKLIDIAKYTAKENNRELLDAGRGNPNWTCSTAREAFFTFGHFAITETRSNWDLGHLAGMPQKKGIKERFFKFINENIDMPGAYLARDIINFGISELGFDGDEFVHELADGIIGDNYPLPDRMLPHMEKIVHDYLVQEMKYDISGKYGDVEIFAVEGATAAMCYIFDSLMANELLKKGDTIALMTPIFTPYLEIPNLPRYDFKVVNINANEVDEKGAHTWQYTKKELEKLRDKSIKALFVVNPNNPASIAMDETSCNNLIDVIENYNKDLMIISDDVYGTFVEDFSSLMSKLPYNTVGVYSYSKYFGVTGWRLGTFALHKKNVFDKKINDLTGELKKSVDKRYSDMSLNPSSLSFMERVVADSRLVALNHTAGLSTPQQVQMAFFSAFALIDKVDAYKKLNMSICHRRQKLLFEALELPINENKNNAAYYTQFDIEEWAKLNYGEDLFKFISKNTSPVDVLYKLANDYSVVLLSGNGFYGPEWSIRISLANLYDEAYTKIGKAIREILNGYIVEWQKIKK
>CP016102.1|AXU47121.1|2822706_2822865_-|hypothetical-protein
MDNFLQGILASLSASLIVYVASKLFRKRKKPLKAATKSGWEFDLKIRFHKTK
>CP016102.1|AXU47122.1|2823222_2824593_-|cell-surface-protein
MELKKLLSLGLAVSMFAAGPISANALDTIYTIQGKDKYETAALIADEQNYTTAILINTDSTMADGLSASGLAGATNAPILLTKKNNIPNATLKRVEKAKKVYIIGGESSIDKATETLLKDKGIEAKRLQGSDRIKTSYNVAKEINSINKVNKVILTNAFKGEPDAMSAASVAVRDKAAIVLTDGKSVPFNTTGVESYVIGGTSSMSDKLVNDTNSTRLGGVDRYDTNKKIVNKFYNGAKEFYITSGTDLVYALVASPMSKNNPIVLVDIGSNKDILKNAAKVTGIGNLSDKIMLECENTINNISLPSSNKNIICGLKIDFDSKHIIWQDKGSYLECYDDNLEYYTEKYKDPTVPINIENTSTQNLDVTKLKVYGEANSTLYMGQYAKIKMDFNSFGVLKPGEKCTIYLDIISLDPSRSMTLTFSYVGDKENYKYEQGLASRILFYNPDGEDFFEYK
>CP016102.1|AXU47123.1|2824991_2825414_+|integrase
MTFVERCYKYIDMNKNNWSPYTVTNTKSWVKNYIEPFFKNLKLTEVNPSSVQAFVNYNFNNSTFTSAKVRYSFLSSVISEVYRLREIQENSCDFIKLPSKEKYSTNEIYNREEVLLLIEKLLGNNIEIPILLMLLLGLRM
>CP016102.1|AXU47124.1|2826399_2827068_-|vanZF-protein
METVSNNQSGVEIQLSLFEAIKDLLLINPIFLLGIILIGISLIVIFKKDSDIPKVKTSILSLAMYYYLCLTLSHIVGIPTFSEYIRLSQLGETFFNPNISFIPFSDGFSLSFILNILLFVPLGFLCPLISKTFERLRNTFLIGFGLSLFIETIQLFTLHRATDINDLITNVIGTIIGYFCFKLIAKLRIVKLHSDDDSMEQDYTVCIPIAIIIVALILGFFS
>CP016102.1|AXU47125.1|2827949_2830370_-|leucyl-tRNA-synthetase
MSVYNFKEVESKWQKIWKDNNQYKMDTAQTEKPNYYTLEMFPYPSGKIHMGHVRNYSIGDVVARFKKMEGYNVLHPMGWDSFGLPAENAAIKHGIHPHKWTMENIEEMKEQLNLLGISYDWDKEVATSTPEYYRFTQEIFLKFLEHGLAYKKKSYVNWCPSCETVLANEQVVQGACERCKATVLKKDLEQWYFKTTEFAEELLNDLDTLDGWPEKVKTMQKNWIGKSTGADLVFDIDGTDKSMTVFTTRPDTTYGVTYMVLAPEHELVKELVAGTEYEADVEAFVKKMHTMTEIERTAADVEKEGMFIGRYVINPLNGKKVPLWIANYVLVEYGTGAIMAVPAHDERDRDFAEKYNLDIIDVITEDNKMIDSEEFNGLDASEGFEGIIDKLEKEGRGKRTINYRLRDWLVSRQRYWGCPIPVVYCDECGIVPVKKEDLPVLLPTDVEFTGKGESPLTTSKQFMSTTCPHCGKPARREVDTMDTFVDSSWYFLRYVDSNNENEPFSKELVNRWHPVDQYIGGVEHAIMHLLYARWFVKAFKSMGMVDFNEPFKNLLTQGMVLMDGSKMSKSKGNTVSPMDIIDEYGADTARLFVLFAAPPERDLDWSEQGVDGCFRFLNRVYRLVDELADVVKKDVEFGELNSQDKDMRYTIHSTLKKVTADLSEKFGFNTAISALMELINDMYKYKELDNINEAVIKEGVQTIVTIIAPFAPHLGEELWTMIGKEGSVFDIDWPKYDEKALVKDEIEVVVQVNGKVRGKLTVNSNISKDEMEKVALEDEKIKGLVEGKTIVKVVAVPKKLVNVVVK
>CP016102.1|AXU47126.1|2830723_2831074_-|iojap-family-protein
MTVEQMTKIAYDAIEDKLGQDTVIINIGKVSSLCDYFIITTASSQRQVKAIADNVEDELAKLGLEPRGKEGQGTQTWVLLDYGDIMVHVFNEENRGFYNLEKLWKDAPYIDIDTLA
>CP016102.1|AXU47127.1|2831190_2831763_-|metal-dependent-phosphohydrolase
MNLENINQRLNQMLPVGRLSHSKNVAKCAEKLCEIYGCDKEKAYLAGMIHDCAKYLSDKEIEDYVNKYEIYLDPIEDGNRSLSHSVIGAYICEYEFEVEDEDIINAIKYHTTGREDMSLLEKIIYIADLIEEGRKFPVVDTLRELAYGGKLDEALLTSFNNTLMFVINKKEEIHPRTVMARNYLIKEKLL
>CP016102.1|AXU47128.1|2831763_2832453_-|nicotinate-nucleotide-adenylyltransferase
MRSENLVKMAELKNTEKLEKFNRHKGKIKIGILGGTFDPIHYAHLATAEFIRDKYDIDKIIFIPSGNPPHKLCITTDKYDRYNMTLLATESNEDFLVSKVEIERKKRTYTIDTLKYLKKKYKNADIYFITGADAICSVEEWKDVKKNFELATFIAATRPGISLLRSQETIEKLTKKYNADIITVYVPSLDISSTYIREQLNEGKSIRYLVPENVENYLYENKLYQYGDD
>CP016102.1|AXU47129.1|2832728_2833367_+|recombination-regulator-RecX
MGIITKIEQQKRNDDRVNIYVDDKFFIAIFKELVYTFNLKKGNEINEEELKPILDDEMYIKAKNKALNILSHADQSEKKLKEKLSSEFDENIVERVIDFLKSYNLVNDSVLAQKIVNTNVNLNKCGKNRIKQNLYNKGINRSTIDEAVSELDKDTEFENAMYLAKKRYERVKKEDKKKIYQKISQHLSYKGFDYDIIKRVLNKLLNFDEYDI
>CP016102.1|AXU47130.1|2833519_2835523_+|glycogen-branching-protein
MKSQKRFKILDIDVYLQPFESDIKKRMKHYEDMKSKTLKNYKDFSSFANAHLYYGFHQTNDGWFYREWAPNADSLSLIGDFNNWNRKSHLLRKIGSGNWEIFIPGQNSLPHKSEVKVQVTANGKTFDRIPLYIKRVIQKDFGGFNGQIWQPKTPFIWTDNDFDLKNITSPLIYECHIGMSTESESIGTYNEFTEKILSKIKKAGYNTIQLMAIMEHPYYASFGYQVSNFYAISSRFGTPEDLKNLINTAHSMGIAVLLDLVHSHAVKNTLEGINEFDGSEHQFFHSGSKGNHPAWGTKLFNYGKPEVIHFLLSNIKFWLNEYHFDGFRFDGVTSMLYRNHGLGVSFDSYEKYFSMNTDIEAITYLQFANELIKEINPNSISIAEDMSGMPGMCIPIKDGGIGFDYRLAMGVPDFWIKTISNLSDEDWDLGKMWYELTTRRPGEKNIGYCESHDQALVGDKTIIFWLADKEMYWNMEINSNNHVINRAISLIKLIKLITFSLAGEGYLNFMGNEFGHPEWIDFPREGNNWSYKYARRQWSLSEDNNLKYKQLLNFDKSMLELTKYSDIFIQNSHELIHMDNDKKILVYSKGKYLFIFNFHPNLIQSVDISKFQNTNYKTILNTDMVEFGGNTKKENLRDYDVYFSSTPPSSKMPIASRTAIVLLDNGI

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Crispr_ID: CP016102_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_18

3713076-3713279

Orphan

Consensus_repeat	Method
TCATCATATAAACCTATTAAATATTATCTTATTTATTGGTATATGGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016102_18

>merge|CP016102|18|3713076-3713279|CRISPRCasFinder
AATATAATCATTTCTCTTAAAGATTATCTTATTTATTACTATATGGAATCATATTGTTTATTATTTCATAGTCCTTTCATCATATAAACCTATTAAATATTATCTTATTTATTGGTATATGGAATTATTTTGTTTATTATTTTATAGTCTTTTCATCATCATATAAACCTATTAAATATTATCTTATTTATTGGTATATGGAAT

>CP016102|18|18|3713076-3713279|CRISPRCasFinder
AATATAATCATTTCTCTTAAAGATTATCTTATTTATTACTATATGGAAT	CATATTGTTTATTATTTCATAGTCCTTTCATCATATAAACCTATTAAATATTATCTTATTTATTGGTATATGGAATTATTTTGTTTATTATTTTATAGTCTTTTCA
TCATCATATAAACCTATTAAATATTATCTTATTTATTGGTATATGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU47863.1\|3702439_3703558_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349920
CP016102.1\|AXU47870.1\|3710777_3711767_-\|somatin-like-protein	unknown	unknown	gnl\|CDD\|259800
CP016102.1\|AXU47873.1\|3716825_3717353_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU47867.1\|3707708_3708596_+\|dihydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
CP016102.1\|AXU47872.1\|3715047_3716730_-\|recombinase	unknown	unknown	gnl\|CDD\|377856
CP016102.1\|AXU47866.1\|3706590_3707592_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
CP016102.1\|AXU47881.1\|3725732_3725939_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379502
CP016102.1\|AXU47862.1\|3702063_3702309_-\|small-acid-soluble-spore-protein	unknown	unknown	gnl\|CDD\|365990
CP016102.1\|AXU47871.1\|3712206_3712962_+\|dihydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
CP016102.1\|AXU47864.1\|3703763_3704957_-\|L-serine-dehydratase	unknown	unknown	gnl\|CDD\|273233
CP016102.1\|AXU47876.1\|3720239_3720596_+\|conjugative-transposon-protein	unknown	unknown	gnl\|CDD\|238045
CP016102.1\|AXU47878.1\|3722493_3722889_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU47874.1\|3717786_3718224_-\|conjugative-transposon-regulatory-protein	unknown	unknown	gnl\|CDD\|274373
CP016102.1\|AXU47879.1\|3723151_3724318_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
CP016102.1\|AXU47875.1\|3718697_3719681_-\|23S-rRNA-m(2)A-2503-methyltransferase	unknown	unknown	gnl\|CDD\|223890
CP016102.1\|AXU47877.1\|3721087_3722425_+\|mobilization-protein	unknown	unknown	gnl\|CDD\|367497
CP016102.1\|AXU47865.1\|3705279_3706161_+\|dihydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
CP016102.1\|AXU47869.1\|3709630_3710347_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|132571
CP016102.1\|AXU47868.1\|3708662_3709412_+\|dihydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
CP016102.1\|AXU47880.1\|3724516_3725707_+\|transposase-mutator-type	unknown	unknown	gnl\|CDD\|307151

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU47863.1\|3702439_3703558_-\|amidohydrolase	gnl\|CDD\|349920	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins. Peptidase M20 family, aminoacyclase-1 YkuR-like subfamily including YkuR and Ama/HipO/HyuC proteins, most of which have not been well characterized to date. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as in the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney suggest a role of the enzyme in amino acid metabolism of these organs.	0
CP016102.1\|AXU47870.1\|3710777_3711767_-\|somatin-like-protein	gnl\|CDD\|259800	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease, and in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	4.28569e-128
CP016102.1\|AXU47867.1\|3707708_3708596_+\|dihydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	6.4792e-159
CP016102.1\|AXU47872.1\|3715047_3716730_-\|recombinase	gnl\|CDD\|377856	pfam07508, Recombinase, Recombinase. This domain is usually found associated with pfam00239 in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.	8.0471e-22
CP016102.1\|AXU47866.1\|3706590_3707592_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
CP016102.1\|AXU47881.1\|3725732_3725939_-\|hypothetical-protein	gnl\|CDD\|379502	pfam14203, TTRAP, Putative tranposon-transfer assisting protein. TTRAP is a family of small bacterial proteins largely from Clostrium difficile. From comparative and other structural studies of the Structure 2L7K, UniProtKB:Q18AW3, it has been suggested that this family is required for interacting with other proteins in order to facilitate the transfer of the transposon CTn4 between different bacterial species. Structure 2L7K comprises an alpha-helical fold of four alpha-helices leading to the production of two clefts, the larger of which displays two highly conserved residues in close proximity, Glu-8 and Lys-48. The gene concerned is part of an operon within transposon CTn4, and is expressed alongside a putative DNA primase, a DNA topoisomerase and conjugal transfer proteins.	1.33021e-16
CP016102.1\|AXU47862.1\|3702063_3702309_-\|small-acid-soluble-spore-protein	gnl\|CDD\|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	7.47735e-06
CP016102.1\|AXU47871.1\|3712206_3712962_+\|dihydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	5.14787e-105
CP016102.1\|AXU47864.1\|3703763_3704957_-\|L-serine-dehydratase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	6.67523e-139
CP016102.1\|AXU47876.1\|3720239_3720596_+\|conjugative-transposon-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.23037e-07
CP016102.1\|AXU47874.1\|3717786_3718224_-\|conjugative-transposon-regulatory-protein	gnl\|CDD\|274373	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily. This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:TIGR02885 and SigG:TIGR02850 as well as SigB:TIGR02941), and the high GC gram positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.	2.679e-09
CP016102.1\|AXU47879.1\|3723151_3724318_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.13389e-39
CP016102.1\|AXU47875.1\|3718697_3719681_-\|23S-rRNA-m(2)A-2503-methyltransferase	gnl\|CDD\|223890	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only].	5.33534e-93
CP016102.1\|AXU47877.1\|3721087_3722425_+\|mobilization-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	4.53196e-42
CP016102.1\|AXU47865.1\|3705279_3706161_+\|dihydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	8.07763e-154
CP016102.1\|AXU47869.1\|3709630_3710347_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|132571	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.	2.92516e-110
CP016102.1\|AXU47868.1\|3708662_3709412_+\|dihydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	8.73789e-105
CP016102.1\|AXU47880.1\|3724516_3725707_+\|transposase-mutator-type	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.48537e-114

>CP016102.1|AXU47871.1|3712206_3712962_+|dihydrodipicolinate-reductase
MLKVIISGYNGTMGRVLAECVKKDNELELVCGVARSADEKGHHSDTKLYKTMTDVTEKADVIIDFSHHETLEPILSYALKNNTPVVLATTGYDENDLHKIEEASKNIPILLSSNTSLGVNILIKLVKDASKMLEGFDIEIIEKHHNRKEDAPSGTATMIANAIKEVLPESENTHGRYGRDCKRKPNEIGIHSIRGGNIISDHDVIFAGDNEVLTLNHHSQSDEVFANGSIIAAKFLIGKQSGLYKMSDILG
>CP016102.1|AXU47870.1|3710777_3711767_-|somatin-like-protein
MLKEEKTYQEKEAKVFNGVAALIMIVLFLVVSIGIMVFGIVKLDSGFTGIGSLMLILGLIFIVVDFILFFGLKMINPKEAIVLVLFGNYYGTIKKEGYYWVNPFCSAINPAASRINVSKSSSDEKVDISTNSRGKKVSLKTMTLNNEKQKVNDLLGNPIIIGVVVIWKVIDATKAVFNVDNYNTFLSIQCDSTIRNVSRLYPYDVSEDGDEKSLRGSSQEIADRLKDELQSRVDIAGIEVSEVRITHLSYAPEIAAAMLQRQQAEAIIAARKKIVEGAVSMVEMALTNLSENNVVTLDEERKAAMVSNLLVVLCGNKDAQPVVNSSSIY
>CP016102.1|AXU47869.1|3709630_3710347_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MVNLNDAYEIARYIKEVKKKTPVKVYVNTNSLHFQSTDKFKVFGSNGSYIFVGDYEDIMEVLDKHGNDITDTHVEYDRRNSAIPLKNTLSEHARIEPGAIIRDMVTIEKNAVVMMGAVINIGAVIGEGSMVDMNAVIGARGTLGKNVHLGAGAVVAGVLEPPSATPVIVEDDVLIGANAVILEGVRIGKGAVVAAGAVVTTDVEAGAVVAGSPAKVIKMKDEKTADKTKLMEDLRNLD
>CP016102.1|AXU47868.1|3708662_3709412_+|dihydrodipicolinate-reductase
MLKVIATGYDGKMGKILADTIREDNELELVCVAARGLDSYEGDLKIYEDMSTIVEEADVVIDFSHHSNLDNILSYVLKTKTPLVIATTGYNDDEMNKIHEAAKVIPVFQSYNMSLGVNVLVKLVKDAAKLLEGFDIEIIEKHHNRKVDAPSGTAVMIANAIKEVLPNVENNYGRYGRSAKRQPNEVGIHAIRGGNIVGEHDALFAGDNEVLTISHQAQSRGIFASGSIAAAKYLVKQKPGFYNMDSMLG
>CP016102.1|AXU47867.1|3707708_3708596_+|dihydrodipicolinate-synthase
MIFKGSAVALVTPFTKDNKVDFDKLGELVEYQIANGTDAIVSCGTTGEANTMTDEEQLATIKYVVEKVNKRVPVIAGSGSNDTMHSVNLSQEAEKLGVDALLIITPYYNKANKAGLKRHFETIANSVKLPIILYNVPGRTCVNISPSLIVELAKIDNIVAVKEASGDLGQVAEIASLVPDDFAIYSGNDDTILPLLSLGGQGVISVLANVCPQETHDLVAKFFEGDIEGSRKLQLGMDALIAALFIEVNPIPVKTAMNLLGFNVGDLRLPLAEMDPANLEVLKKELVNFGLKVNA
>CP016102.1|AXU47866.1|3706590_3707592_+|aspartate-semialdehyde-dehydrogenase
MKKVNVAIVGATGMVGRTFLKVLEERNFPIENLFLFSSSKSAGSKVMFCGKEYIVEELKETSFTDRGIQIALFSAGGSISEKYAPIAASNGILVVDNSSQWRMNPDVPLVVPEVNPEAIKNHKGIIANPNCSTIQAMVPLKALDDKYKIKRIVYSTYQAVSGSGVKGVEDLEKGMNGNPTGFYPHQISYNCLPHIDSFTENGYTKEEMKMVNETMKILDNYDLKITATTVRVPVKNGHSESINVEFNNPFELDDLVKTLEEAPGVVVVDNPAKNEYPTAVEFDDRDEVFVGRIRRDFSVDNGVNLWVVADNIRKGAATNAIQIAEMALSYDLV
>CP016102.1|AXU47865.1|3705279_3706161_+|dihydrodipicolinate-synthase
MLFKGSAVALVTPFTEDNNVNFEKLGELIEYHIENGTDALVVCGTTGEATTMSESEIFAVIKYTVEKVNKRIPVIAGTGSNNTMLSVHMSQEAEKLGVDGLLIITPYYNKTNEKGLKLHFETIANSVKLPIILYNVPGRTKVNIKPSVVAELAKIDNIVAVKEASGDLAQVAEIAKLVPKDFTIYSGNDDTILPLLSLGGSGVISVLANICPKETHDLVTKFFEGDIEGSKKLQLDMDALIAALFIEVNPVPVKTAMNILGFNVGDLRLPLAEMEETNLNVLKQELTNSGFKF
>CP016102.1|AXU47864.1|3703763_3704957_-|L-serine-dehydratase
MDTLKELFKIGSGPSSSHTMGPQRAAERFKNENPDAESFRAILYGSLAATGKGHLTDYIIEKTIAPKKVEIVWEEDIIKDFHPNGMKFEALDKDKNVTAEWTVYSVGGGTIAEEGQRNSKSNSIYHLDTMDEIVKWCKENNKTLVDFVLECEPKDIKDYIKTIKDAMRKSIDDGLSTDEIIPGKLLLKRRASTFYNAYKKDKSFSTLVYAYALAASEQNASGNIIVTAPTCGSAGVIPGIFFAMQDFYNYDDEKIIEALLVAGIIGNIIKTNASISGAEVGCQGEVGAACSMAAAAVAYLKGGTIDHIEYAAEIALEHHLGMTCDPVYGYVQIPCIERNAMAAQRAYDAANYALLTDGSHSVSLDQVVETMKETGIDMMDKYKETAKGGLAKHFFSC
>CP016102.1|AXU47863.1|3702439_3703558_-|amidohydrolase
MREASYLQEQLYKHRKSLNPIAEIGRKEYKTSKYIRDYLDKLGIEYEVYLETGIVGVIEGKRPKKDIAFRADIDGLHSEEGVKHLCGHDGHATILLGLIEYLNDNKEDLNDNIVFIFQPAEEGPGGAKALIDEGVLRKYNIDEIYGLHIYPELPEGYVGTREGYFMAQIGDIDIEIVSKSGHGAMPQNGIDGIVIASNFVSSLQTIVSRNISPIDNAVLTIGRIEGGARRNIIAENIKMEGTMRCFNPEVYEKMKLRVRELARGFGLAYNCKVNINIIDDYIAVKNDKDLYQEFVEAIGSDTVVELEPLMISEDFSYYQKEVPGLFFMLGSRNEEKGFVNGLHNINFNFDEKICVNALNVYSKLLKYKEAID
>CP016102.1|AXU47862.1|3702063_3702309_-|small-acid-soluble-spore-protein
MKEKIQREKKITNGKNTKILTNDDIMKYEIASELGLMDKVGERGWAGLTAKEAGRIGGMLTSRKKRLKKIVEEQNKKDESI
>CP016102.1|AXU47872.1|3715047_3716730_-|recombinase
MPRIRKDKMARSYAEPFWKIGLYIRLSREDDNEDESESVINQEKILRDFVDSYFEPGTYVIVDVFADDGLTGTDTARPNFKRLEGCIVRKEVNCMIIKSLARGFRNLADQQKFLEEFIPINGARFICTGTPFIDTYANPHSASGLEVPIRGMFNEQFAATTSEEIRKTFKMKRERGEFIGAFAPYGYKKDPNDKNSLIVDEEAAEVVKSIYHWFVNEGYSKMGIAKRLNQMGEPNPEAYKKKKGFKYNNPNSDKNDGLWSASTIARILQNEVYTGVMVQGRNRVISYKVHKQINVPEEEWFVVPNTHEAIIDRETFEKAQALHKRDTRTAPGKQEVYLMSGFVRCADCKKAMRRKTARDIAYYSCRSYADKKICSKHSIRQDKLENAVLAALQMQIALVDRLAEEIERINNAPVINRESKRLSHSLKQAEKQLKQYNDASDSLYLDWKSGEITKEEYRRLKGKIAEQIQQLEANISYLKEEMQVMADGIGTDDPYLTAFLKYKNIQSLNRGIMVELVKAVWVHENGEITVDFNFADEYQRIIDYIENNHNVIRVIENKAI
>CP016102.1|AXU47873.1|3716825_3717353_-|hypothetical-protein
MTAFPHRGKAERELPRRKTSLAACRRRHTNGYNDTRALDALKASCAAPISMGRGETPVRLQLTTARFCLISHIVQAGAHILYYAANREGKKMIDKLQLQQMRNVDITQVDRSTLIDIRNIHIDSSLPAAKKMQSYLEQIVNPYCFLCGDTPVRIRFVAEDRTLKQSLCDYFLSLK
>CP016102.1|AXU47874.1|3717786_3718224_-|conjugative-transposon-regulatory-protein
MELSSSDKERIQHQYDALAKKTLVGEAKSHRRTLAKRAAREVTFSDLSESELAQLFTTDEYESDYFRFQVSGFDVLVKNELLAEALNALPERKRDIILLSYFLDMSDAEIGELLNVVRTTVFRHRKSALAKIKQYLEGKADDEYR
>CP016102.1|AXU47875.1|3718697_3719681_-|23S-rRNA-m(2)A-2503-methyltransferase
MKRLPKYTPAEVRNDPYGFTYKEMSEVIGENEAKALYEELYKQLPRKKNLSMLVKNICKSSDTEKYVYELKDNKYIETVFIKRRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLRRKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQLKKLREEHLKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHNRKIVFAYLLLPGINDRPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLEVTMRVSHGREINAACGQLANTYNKFKKK
>CP016102.1|AXU47876.1|3720239_3720596_+|conjugative-transposon-protein
MAKRPVPLYDFKAFGAAIKAARNEYGESRKKVSDELYISPRYLANIENKGQQPSLQVFYDLVTRYHISVDQFFFPNSNAEKSTGRRQLDALLDGMSDKGIRIVTATAREITEVEKAED
>CP016102.1|AXU47877.1|3721087_3722425_+|mobilization-protein
MAVTKTHPIKSTLKAAIDYILNPEKTDGKLLASSFVCGLETADIEFAWTREAAGDRGTHLGRHLIQSFAVGETTPEEAHKIGMELAQAVLGGKYEFVLTTHVDKEHLHNHLIFNAVSFVDYKKYHSNKQSYHAIRRTSDRICKEHGLSVVVPGQDKGKSYAEYTAEKQGTSYKAKLKTAIDTLIPQVKDFDELLRRLQEMGYEIKQGKYISFRAAGQERFTRTKTLGAAYTEEAIKERIKGVYVAKTKTLREDKKIRLVVDLENSIKAQQSAGYERWAKIHNLKQAAKSMNFLTENKIEYYSELESKIADIMTAHDAAAKAVKEVEQRMSDLSLLIKHTTTYRQLKPIYDEYRKSPDKEKYLRGHESEIILFEAAARALKEMQIKKLPDLAALRKEYRSLNDRKTKLYEDYRQAKKQMQEYGVVKKNVDSILYPSQSRAKEQERG
>CP016102.1|AXU47878.1|3722493_3722889_+|hypothetical-protein
MGYLAAAGAYLIIGLVVSFILMVVGLFIGHIIVFDSIALGIISGVCCNHFFTLHPALCVLIGAAVFALLLFLQKTRFGFWVIGVLLSAAWAVIFGLLAFIISNADQLWFYVVCGLAFIVMLLLHIKARDKA
>CP016102.1|AXU47879.1|3723151_3724318_+|protein-kinase
MNIENYIETQYRKLLEVSQLNTEFSDLYSSINHVKLREILTTLHYEFTALFRSMNTRLPTGEYGAHFWADQSRQLISSIEITLGLYNTLKGTQYAFEIDDYYFDIIKKCRDFLSASGGSTLPAHMQQIELYYTIPIFKTSLSITVDNTPAKNSFELKQIGSGSYAHVYKYKDTFYNKLFVLKRAKKDLNDKELARFKREFDEMQEFSSPYILEVYCYNESNNEYVMEYMDYTLDRYISQNNSELTIAQRKNIGQQILRAFNYIHSKGRLHRDISPKNILLKKYDDTIVVKIADFGLVKVPDSTLTTASTEFKGYFNDPSLILDGFDTYNILHETYALTRVIYFVMTGKTNSDNISDQKLREFVQKGLHSDKSVRFQNVAEMLQAFRAI
>CP016102.1|AXU47880.1|3724516_3725707_+|transposase-mutator-type
MSEKIVQLNEEVIKGQLKELVRGSVEETLNELLEAEAEKLTQAARYERNEQRQGYRSGHYNRNLTTTSGDVTLKMPKLKGISFETAIIERYRRRESSVEEALIEMYLAGVSVRRVEDITETLWGSKVSPSTISELNKKAYVHIEDWRNRPLQGGRYPYVYVDGIYLRRNWGGEFENVAILVAIAVNEDGYREVLGAAEGMKEDKASWINFFQWLRGRGLDGVKLIVGDKCLGMLEAVGEVFPEAKYQRCTVHFYRNVFSVTPRSKVKLVAKMLKAIHAQESKKAAREKARAVVEELCSMKLKEAAKKVEDSIEETLTYCDFPSEHWTRIRTNNVIERLNREIRRRTRVVGSFPDGNSALMLVCARLRHVAGSQWGNKKYMNMKHLEAAIEDASIAG
>CP016102.1|AXU47881.1|3725732_3725939_-|hypothetical-protein
MNIRFTIEEENLIAIYAEDSRERTIDNINSAMPYMDEDMRQLAAAAVNKLQTMTDSAFSGSCQDFFAL

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Crispr_ID: CP016102_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_19

3713812-3714393

Orphan

Consensus_repeat	Method
TGCTCCGGTTGGNCCTGTTGNTCC	CRT

9 spacers

The CRISPR arrays of CP016102_19

>merge|CP016102|19|3713812-3714393|CRT
CGCTCCGGTTGGACCTGTTGCTCCATTTGCTCCCGTTGCTCCGGTCGCCCCTGTTGCTCCGGTTGCTCCATTTGCTCCCGTTGCTCCGGTTGGGCCTATCGCTCCTGCTACTCCATTTGCTCCCGTTGCTCCTACTGCTCCGGTTGGGCCTGTTGCTCCATTTGCCCCTGTTGCTCCTGTTGCTCCTGTAGCTCCTGCTACTCCATTTGCTCCGGTTGGACCCGTTGGACCTATTGGACCTGCCGCTCCATTTGCTCCCGTTGCTCCTACCGCTCCGGTTGGGCCTGTTGCTCCATTTGCCCCTGTTGCTCCTGTCGCTCCAGTTGGACCTACTGCTCCATCTGCTCCGGTTGGGCCTGTTGCTCCTACTGCTCCGGTTGGACCTATTGCCCCATCTGGACCTGTTGCTCCAGTTGGACCTGTTGGGCCTACCAAACCATTTGCTCCCGTTGCTCCGGTTGCTCCGGTTGGGCCTACCAAACCATTTGCTCCCGTTGCTCCGGTTGCTCCTGTATTTCCGGTTGGACCTATTGCTCCATCTGGACCTGTTGCTCCTACTGCTCCGGTTGGACCTACCTCTCC

>CP016102|19|6|3713812-3714393|CRT
CGCTCCGGTTGGACCTGTTGCTCC	ATTTGCTCCCGTTGCTCCGGTCGCCCCTGTTGCTCCGGTTGCTCCATTTGCTCCCGT
TGCTCCGGTTGGGCCTATCGCTCC	TGCTACTCCATTTGCTCCCGTTGCTCCTAC
TGCTCCGGTTGGGCCTGTTGCTCC	ATTTGCCCCTGTTGCTCCTGTTGCTCCTGTAGCTCCTGCTACTCCATT
TGCTCCGGTTGGACCCGTTGGACC	TATTGGACCTGCCGCTCCATTTGCTCCCGTTGCTCCTAC
CGCTCCGGTTGGGCCTGTTGCTCC	ATTTGCCCCTGTTGCTCCTGTCGCTCCAGTTGGACCTACTGCTCCATC
TGCTCCGGTTGGGCCTGTTGCTCC	TACTGCTCCGGTTGGACCTATTGCCCCATCTGGACCTGT
TGCTCCAGTTGGACCTGTTGGGCC	TACCAAACCATTTGCTCCCGT
TGCTCCGGTTGCTCCGGTTGGGCC	TACCAAACCATTTGCTCCCGT
TGCTCCGGTTGCTCCTGTATTTCC	GGTTGGACCTATTGCTCCATCTGGACCTGTTGCTCCTAC
TGCTCCGGTTGGACCTACCTCTCC

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU47863.1\|3702439_3703558_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349920
CP016102.1\|AXU47870.1\|3710777_3711767_-\|somatin-like-protein	unknown	unknown	gnl\|CDD\|259800
CP016102.1\|AXU47873.1\|3716825_3717353_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU47867.1\|3707708_3708596_+\|dihydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
CP016102.1\|AXU47872.1\|3715047_3716730_-\|recombinase	unknown	unknown	gnl\|CDD\|377856
CP016102.1\|AXU47866.1\|3706590_3707592_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
CP016102.1\|AXU47881.1\|3725732_3725939_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379502
CP016102.1\|AXU47862.1\|3702063_3702309_-\|small-acid-soluble-spore-protein	unknown	unknown	gnl\|CDD\|365990
CP016102.1\|AXU47871.1\|3712206_3712962_+\|dihydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
CP016102.1\|AXU47864.1\|3703763_3704957_-\|L-serine-dehydratase	unknown	unknown	gnl\|CDD\|273233
CP016102.1\|AXU47876.1\|3720239_3720596_+\|conjugative-transposon-protein	unknown	unknown	gnl\|CDD\|238045
CP016102.1\|AXU47878.1\|3722493_3722889_+\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU47874.1\|3717786_3718224_-\|conjugative-transposon-regulatory-protein	unknown	unknown	gnl\|CDD\|274373
CP016102.1\|AXU47879.1\|3723151_3724318_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
CP016102.1\|AXU47875.1\|3718697_3719681_-\|23S-rRNA-m(2)A-2503-methyltransferase	unknown	unknown	gnl\|CDD\|223890
CP016102.1\|AXU47877.1\|3721087_3722425_+\|mobilization-protein	unknown	unknown	gnl\|CDD\|367497
CP016102.1\|AXU47865.1\|3705279_3706161_+\|dihydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
CP016102.1\|AXU47869.1\|3709630_3710347_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|132571
CP016102.1\|AXU47868.1\|3708662_3709412_+\|dihydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
CP016102.1\|AXU47880.1\|3724516_3725707_+\|transposase-mutator-type	unknown	unknown	gnl\|CDD\|307151

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU47863.1\|3702439_3703558_-\|amidohydrolase	gnl\|CDD\|349920	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins. Peptidase M20 family, aminoacyclase-1 YkuR-like subfamily including YkuR and Ama/HipO/HyuC proteins, most of which have not been well characterized to date. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as in the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney suggest a role of the enzyme in amino acid metabolism of these organs.	0
CP016102.1\|AXU47870.1\|3710777_3711767_-\|somatin-like-protein	gnl\|CDD\|259800	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease, and in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	4.28569e-128
CP016102.1\|AXU47867.1\|3707708_3708596_+\|dihydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	6.4792e-159
CP016102.1\|AXU47872.1\|3715047_3716730_-\|recombinase	gnl\|CDD\|377856	pfam07508, Recombinase, Recombinase. This domain is usually found associated with pfam00239 in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.	8.0471e-22
CP016102.1\|AXU47866.1\|3706590_3707592_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
CP016102.1\|AXU47881.1\|3725732_3725939_-\|hypothetical-protein	gnl\|CDD\|379502	pfam14203, TTRAP, Putative tranposon-transfer assisting protein. TTRAP is a family of small bacterial proteins largely from Clostrium difficile. From comparative and other structural studies of the Structure 2L7K, UniProtKB:Q18AW3, it has been suggested that this family is required for interacting with other proteins in order to facilitate the transfer of the transposon CTn4 between different bacterial species. Structure 2L7K comprises an alpha-helical fold of four alpha-helices leading to the production of two clefts, the larger of which displays two highly conserved residues in close proximity, Glu-8 and Lys-48. The gene concerned is part of an operon within transposon CTn4, and is expressed alongside a putative DNA primase, a DNA topoisomerase and conjugal transfer proteins.	1.33021e-16
CP016102.1\|AXU47862.1\|3702063_3702309_-\|small-acid-soluble-spore-protein	gnl\|CDD\|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	7.47735e-06
CP016102.1\|AXU47871.1\|3712206_3712962_+\|dihydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	5.14787e-105
CP016102.1\|AXU47864.1\|3703763_3704957_-\|L-serine-dehydratase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	6.67523e-139
CP016102.1\|AXU47876.1\|3720239_3720596_+\|conjugative-transposon-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.23037e-07
CP016102.1\|AXU47874.1\|3717786_3718224_-\|conjugative-transposon-regulatory-protein	gnl\|CDD\|274373	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily. This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:TIGR02885 and SigG:TIGR02850 as well as SigB:TIGR02941), and the high GC gram positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.	2.679e-09
CP016102.1\|AXU47879.1\|3723151_3724318_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.13389e-39
CP016102.1\|AXU47875.1\|3718697_3719681_-\|23S-rRNA-m(2)A-2503-methyltransferase	gnl\|CDD\|223890	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only].	5.33534e-93
CP016102.1\|AXU47877.1\|3721087_3722425_+\|mobilization-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	4.53196e-42
CP016102.1\|AXU47865.1\|3705279_3706161_+\|dihydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	8.07763e-154
CP016102.1\|AXU47869.1\|3709630_3710347_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|132571	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.	2.92516e-110
CP016102.1\|AXU47868.1\|3708662_3709412_+\|dihydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	8.73789e-105
CP016102.1\|AXU47880.1\|3724516_3725707_+\|transposase-mutator-type	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.48537e-114

>CP016102.1|AXU47871.1|3712206_3712962_+|dihydrodipicolinate-reductase
MLKVIISGYNGTMGRVLAECVKKDNELELVCGVARSADEKGHHSDTKLYKTMTDVTEKADVIIDFSHHETLEPILSYALKNNTPVVLATTGYDENDLHKIEEASKNIPILLSSNTSLGVNILIKLVKDASKMLEGFDIEIIEKHHNRKEDAPSGTATMIANAIKEVLPESENTHGRYGRDCKRKPNEIGIHSIRGGNIISDHDVIFAGDNEVLTLNHHSQSDEVFANGSIIAAKFLIGKQSGLYKMSDILG
>CP016102.1|AXU47870.1|3710777_3711767_-|somatin-like-protein
MLKEEKTYQEKEAKVFNGVAALIMIVLFLVVSIGIMVFGIVKLDSGFTGIGSLMLILGLIFIVVDFILFFGLKMINPKEAIVLVLFGNYYGTIKKEGYYWVNPFCSAINPAASRINVSKSSSDEKVDISTNSRGKKVSLKTMTLNNEKQKVNDLLGNPIIIGVVVIWKVIDATKAVFNVDNYNTFLSIQCDSTIRNVSRLYPYDVSEDGDEKSLRGSSQEIADRLKDELQSRVDIAGIEVSEVRITHLSYAPEIAAAMLQRQQAEAIIAARKKIVEGAVSMVEMALTNLSENNVVTLDEERKAAMVSNLLVVLCGNKDAQPVVNSSSIY
>CP016102.1|AXU47869.1|3709630_3710347_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MVNLNDAYEIARYIKEVKKKTPVKVYVNTNSLHFQSTDKFKVFGSNGSYIFVGDYEDIMEVLDKHGNDITDTHVEYDRRNSAIPLKNTLSEHARIEPGAIIRDMVTIEKNAVVMMGAVINIGAVIGEGSMVDMNAVIGARGTLGKNVHLGAGAVVAGVLEPPSATPVIVEDDVLIGANAVILEGVRIGKGAVVAAGAVVTTDVEAGAVVAGSPAKVIKMKDEKTADKTKLMEDLRNLD
>CP016102.1|AXU47868.1|3708662_3709412_+|dihydrodipicolinate-reductase
MLKVIATGYDGKMGKILADTIREDNELELVCVAARGLDSYEGDLKIYEDMSTIVEEADVVIDFSHHSNLDNILSYVLKTKTPLVIATTGYNDDEMNKIHEAAKVIPVFQSYNMSLGVNVLVKLVKDAAKLLEGFDIEIIEKHHNRKVDAPSGTAVMIANAIKEVLPNVENNYGRYGRSAKRQPNEVGIHAIRGGNIVGEHDALFAGDNEVLTISHQAQSRGIFASGSIAAAKYLVKQKPGFYNMDSMLG
>CP016102.1|AXU47867.1|3707708_3708596_+|dihydrodipicolinate-synthase
MIFKGSAVALVTPFTKDNKVDFDKLGELVEYQIANGTDAIVSCGTTGEANTMTDEEQLATIKYVVEKVNKRVPVIAGSGSNDTMHSVNLSQEAEKLGVDALLIITPYYNKANKAGLKRHFETIANSVKLPIILYNVPGRTCVNISPSLIVELAKIDNIVAVKEASGDLGQVAEIASLVPDDFAIYSGNDDTILPLLSLGGQGVISVLANVCPQETHDLVAKFFEGDIEGSRKLQLGMDALIAALFIEVNPIPVKTAMNLLGFNVGDLRLPLAEMDPANLEVLKKELVNFGLKVNA
>CP016102.1|AXU47866.1|3706590_3707592_+|aspartate-semialdehyde-dehydrogenase
MKKVNVAIVGATGMVGRTFLKVLEERNFPIENLFLFSSSKSAGSKVMFCGKEYIVEELKETSFTDRGIQIALFSAGGSISEKYAPIAASNGILVVDNSSQWRMNPDVPLVVPEVNPEAIKNHKGIIANPNCSTIQAMVPLKALDDKYKIKRIVYSTYQAVSGSGVKGVEDLEKGMNGNPTGFYPHQISYNCLPHIDSFTENGYTKEEMKMVNETMKILDNYDLKITATTVRVPVKNGHSESINVEFNNPFELDDLVKTLEEAPGVVVVDNPAKNEYPTAVEFDDRDEVFVGRIRRDFSVDNGVNLWVVADNIRKGAATNAIQIAEMALSYDLV
>CP016102.1|AXU47865.1|3705279_3706161_+|dihydrodipicolinate-synthase
MLFKGSAVALVTPFTEDNNVNFEKLGELIEYHIENGTDALVVCGTTGEATTMSESEIFAVIKYTVEKVNKRIPVIAGTGSNNTMLSVHMSQEAEKLGVDGLLIITPYYNKTNEKGLKLHFETIANSVKLPIILYNVPGRTKVNIKPSVVAELAKIDNIVAVKEASGDLAQVAEIAKLVPKDFTIYSGNDDTILPLLSLGGSGVISVLANICPKETHDLVTKFFEGDIEGSKKLQLDMDALIAALFIEVNPVPVKTAMNILGFNVGDLRLPLAEMEETNLNVLKQELTNSGFKF
>CP016102.1|AXU47864.1|3703763_3704957_-|L-serine-dehydratase
MDTLKELFKIGSGPSSSHTMGPQRAAERFKNENPDAESFRAILYGSLAATGKGHLTDYIIEKTIAPKKVEIVWEEDIIKDFHPNGMKFEALDKDKNVTAEWTVYSVGGGTIAEEGQRNSKSNSIYHLDTMDEIVKWCKENNKTLVDFVLECEPKDIKDYIKTIKDAMRKSIDDGLSTDEIIPGKLLLKRRASTFYNAYKKDKSFSTLVYAYALAASEQNASGNIIVTAPTCGSAGVIPGIFFAMQDFYNYDDEKIIEALLVAGIIGNIIKTNASISGAEVGCQGEVGAACSMAAAAVAYLKGGTIDHIEYAAEIALEHHLGMTCDPVYGYVQIPCIERNAMAAQRAYDAANYALLTDGSHSVSLDQVVETMKETGIDMMDKYKETAKGGLAKHFFSC
>CP016102.1|AXU47863.1|3702439_3703558_-|amidohydrolase
MREASYLQEQLYKHRKSLNPIAEIGRKEYKTSKYIRDYLDKLGIEYEVYLETGIVGVIEGKRPKKDIAFRADIDGLHSEEGVKHLCGHDGHATILLGLIEYLNDNKEDLNDNIVFIFQPAEEGPGGAKALIDEGVLRKYNIDEIYGLHIYPELPEGYVGTREGYFMAQIGDIDIEIVSKSGHGAMPQNGIDGIVIASNFVSSLQTIVSRNISPIDNAVLTIGRIEGGARRNIIAENIKMEGTMRCFNPEVYEKMKLRVRELARGFGLAYNCKVNINIIDDYIAVKNDKDLYQEFVEAIGSDTVVELEPLMISEDFSYYQKEVPGLFFMLGSRNEEKGFVNGLHNINFNFDEKICVNALNVYSKLLKYKEAID
>CP016102.1|AXU47862.1|3702063_3702309_-|small-acid-soluble-spore-protein
MKEKIQREKKITNGKNTKILTNDDIMKYEIASELGLMDKVGERGWAGLTAKEAGRIGGMLTSRKKRLKKIVEEQNKKDESI
>CP016102.1|AXU47872.1|3715047_3716730_-|recombinase
MPRIRKDKMARSYAEPFWKIGLYIRLSREDDNEDESESVINQEKILRDFVDSYFEPGTYVIVDVFADDGLTGTDTARPNFKRLEGCIVRKEVNCMIIKSLARGFRNLADQQKFLEEFIPINGARFICTGTPFIDTYANPHSASGLEVPIRGMFNEQFAATTSEEIRKTFKMKRERGEFIGAFAPYGYKKDPNDKNSLIVDEEAAEVVKSIYHWFVNEGYSKMGIAKRLNQMGEPNPEAYKKKKGFKYNNPNSDKNDGLWSASTIARILQNEVYTGVMVQGRNRVISYKVHKQINVPEEEWFVVPNTHEAIIDRETFEKAQALHKRDTRTAPGKQEVYLMSGFVRCADCKKAMRRKTARDIAYYSCRSYADKKICSKHSIRQDKLENAVLAALQMQIALVDRLAEEIERINNAPVINRESKRLSHSLKQAEKQLKQYNDASDSLYLDWKSGEITKEEYRRLKGKIAEQIQQLEANISYLKEEMQVMADGIGTDDPYLTAFLKYKNIQSLNRGIMVELVKAVWVHENGEITVDFNFADEYQRIIDYIENNHNVIRVIENKAI
>CP016102.1|AXU47873.1|3716825_3717353_-|hypothetical-protein
MTAFPHRGKAERELPRRKTSLAACRRRHTNGYNDTRALDALKASCAAPISMGRGETPVRLQLTTARFCLISHIVQAGAHILYYAANREGKKMIDKLQLQQMRNVDITQVDRSTLIDIRNIHIDSSLPAAKKMQSYLEQIVNPYCFLCGDTPVRIRFVAEDRTLKQSLCDYFLSLK
>CP016102.1|AXU47874.1|3717786_3718224_-|conjugative-transposon-regulatory-protein
MELSSSDKERIQHQYDALAKKTLVGEAKSHRRTLAKRAAREVTFSDLSESELAQLFTTDEYESDYFRFQVSGFDVLVKNELLAEALNALPERKRDIILLSYFLDMSDAEIGELLNVVRTTVFRHRKSALAKIKQYLEGKADDEYR
>CP016102.1|AXU47875.1|3718697_3719681_-|23S-rRNA-m(2)A-2503-methyltransferase
MKRLPKYTPAEVRNDPYGFTYKEMSEVIGENEAKALYEELYKQLPRKKNLSMLVKNICKSSDTEKYVYELKDNKYIETVFIKRRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLRRKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQLKKLREEHLKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHNRKIVFAYLLLPGINDRPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLEVTMRVSHGREINAACGQLANTYNKFKKK
>CP016102.1|AXU47876.1|3720239_3720596_+|conjugative-transposon-protein
MAKRPVPLYDFKAFGAAIKAARNEYGESRKKVSDELYISPRYLANIENKGQQPSLQVFYDLVTRYHISVDQFFFPNSNAEKSTGRRQLDALLDGMSDKGIRIVTATAREITEVEKAED
>CP016102.1|AXU47877.1|3721087_3722425_+|mobilization-protein
MAVTKTHPIKSTLKAAIDYILNPEKTDGKLLASSFVCGLETADIEFAWTREAAGDRGTHLGRHLIQSFAVGETTPEEAHKIGMELAQAVLGGKYEFVLTTHVDKEHLHNHLIFNAVSFVDYKKYHSNKQSYHAIRRTSDRICKEHGLSVVVPGQDKGKSYAEYTAEKQGTSYKAKLKTAIDTLIPQVKDFDELLRRLQEMGYEIKQGKYISFRAAGQERFTRTKTLGAAYTEEAIKERIKGVYVAKTKTLREDKKIRLVVDLENSIKAQQSAGYERWAKIHNLKQAAKSMNFLTENKIEYYSELESKIADIMTAHDAAAKAVKEVEQRMSDLSLLIKHTTTYRQLKPIYDEYRKSPDKEKYLRGHESEIILFEAAARALKEMQIKKLPDLAALRKEYRSLNDRKTKLYEDYRQAKKQMQEYGVVKKNVDSILYPSQSRAKEQERG
>CP016102.1|AXU47878.1|3722493_3722889_+|hypothetical-protein
MGYLAAAGAYLIIGLVVSFILMVVGLFIGHIIVFDSIALGIISGVCCNHFFTLHPALCVLIGAAVFALLLFLQKTRFGFWVIGVLLSAAWAVIFGLLAFIISNADQLWFYVVCGLAFIVMLLLHIKARDKA
>CP016102.1|AXU47879.1|3723151_3724318_+|protein-kinase
MNIENYIETQYRKLLEVSQLNTEFSDLYSSINHVKLREILTTLHYEFTALFRSMNTRLPTGEYGAHFWADQSRQLISSIEITLGLYNTLKGTQYAFEIDDYYFDIIKKCRDFLSASGGSTLPAHMQQIELYYTIPIFKTSLSITVDNTPAKNSFELKQIGSGSYAHVYKYKDTFYNKLFVLKRAKKDLNDKELARFKREFDEMQEFSSPYILEVYCYNESNNEYVMEYMDYTLDRYISQNNSELTIAQRKNIGQQILRAFNYIHSKGRLHRDISPKNILLKKYDDTIVVKIADFGLVKVPDSTLTTASTEFKGYFNDPSLILDGFDTYNILHETYALTRVIYFVMTGKTNSDNISDQKLREFVQKGLHSDKSVRFQNVAEMLQAFRAI
>CP016102.1|AXU47880.1|3724516_3725707_+|transposase-mutator-type
MSEKIVQLNEEVIKGQLKELVRGSVEETLNELLEAEAEKLTQAARYERNEQRQGYRSGHYNRNLTTTSGDVTLKMPKLKGISFETAIIERYRRRESSVEEALIEMYLAGVSVRRVEDITETLWGSKVSPSTISELNKKAYVHIEDWRNRPLQGGRYPYVYVDGIYLRRNWGGEFENVAILVAIAVNEDGYREVLGAAEGMKEDKASWINFFQWLRGRGLDGVKLIVGDKCLGMLEAVGEVFPEAKYQRCTVHFYRNVFSVTPRSKVKLVAKMLKAIHAQESKKAAREKARAVVEELCSMKLKEAAKKVEDSIEETLTYCDFPSEHWTRIRTNNVIERLNREIRRRTRVVGSFPDGNSALMLVCARLRHVAGSQWGNKKYMNMKHLEAAIEDASIAG
>CP016102.1|AXU47881.1|3725732_3725939_-|hypothetical-protein
MNIRFTIEEENLIAIYAEDSRERTIDNINSAMPYMDEDMRQLAAAAVNKLQTMTDSAFSGSCQDFFAL

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Crispr_ID: CP016102_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016102_20

4062287-4062421

Orphan

Consensus_repeat	Method
GTTGCTTAAAGTGCTAACGCACAGCGCCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016102_20

>merge|CP016102|20|4062287-4062421|CRISPRCasFinder
AGTTTTCAAAGTGCTAACGCACAGCGCCAACGGATAAATCCCGTTGCTTAAAGTGCTAACGCACAGCGCCAACAAACAAACTTCACATGCGTTCAGTTTATTCTGTTGCTTAAAGTACTAACGCACAGCGCCAAC

>CP016102|20|19|4062287-4062421|CRISPRCasFinder
AGTTTTCAAAGTGCTAACGCACAGCGCCAAC	GGATAAATCCCGTTGCTTAAAGTGCTAACGCACAGCGCCAACAAACAAACTTCACATGCGTTCAGTTTATTCT
GTTGCTTAAAGTACTAACGCACAGCGCCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP016102.1\|AXU48175.1\|4052142_4052847_-\|polynucleotide-adenylyltransferase/metal-dependent-phosphohydrolase	unknown	unknown	gnl\|CDD\|131739
CP016102.1\|AXU48183.1\|4064303_4064498_-\|hypothetical-protein	unknown	unknown	unknown
CP016102.1\|AXU48184.1\|4064806_4066336_-\|lysyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234778
CP016102.1\|AXU48174.1\|4051526_4051955_+\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP016102.1\|AXU48192.1\|4073869_4075258_-\|ATPase	unknown	unknown	gnl\|CDD\|274129
CP016102.1\|AXU48182.1\|4058729_4058921_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377214
CP016102.1\|AXU48173.1\|4050059_4051490_+\|nicotinate-phosphribosyltransferase	unknown	unknown	gnl\|CDD\|236426
CP016102.1\|AXU48180.1\|4056355_4057045_-\|thymidylate-kinase	unknown	unknown	gnl\|CDD\|223203
CP016102.1\|AXU48176.1\|4052869_4053703_-\|corrin/porphyrin-methyltransferase	unknown	unknown	gnl\|CDD\|381175
CP016102.1\|AXU48191.1\|4071865_4073836_-\|cell-division-protein	unknown	unknown	gnl\|CDD\|273520
CP016102.1\|AXU48190.1\|4070566_4071544_-\|bifunctional-biotin-operon-repressor/biotin--[acetyl-CoA-carboxylase]-synthetase	unknown	unknown	gnl\|CDD\|237010
CP016102.1\|AXU48189.1\|4069605_4070574_-\|peptidase	unknown	unknown	gnl\|CDD\|239070
CP016102.1\|AXU48179.1\|4055417_4056353_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|180132
CP016102.1\|AXU48185.1\|4066350_4066830_-\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
CP016102.1\|AXU48181.1\|4057165_4058575_-\|arginine-decarboxylase	unknown	unknown	gnl\|CDD\|224893
CP016102.1\|AXU48188.1\|4068832_4069423_-\|membrane-protein	unknown	unknown	gnl\|CDD\|227029
CP016102.1\|AXU48178.1\|4054527_4055421_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|224688
CP016102.1\|AXU48186.1\|4066938_4067907_-\|tRNA-dihydrouridine-synthase	unknown	unknown	gnl\|CDD\|129820
CP016102.1\|AXU48187.1\|4068043_4068814_-\|pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
CP016102.1\|AXU48177.1\|4053703_4054450_-\|methyltransferase-small	unknown	unknown	gnl\|CDD\|226608

Protein	Function_ID	Function_description	E-value
CP016102.1\|AXU48175.1\|4052142_4052847_-\|polynucleotide-adenylyltransferase/metal-dependent-phosphohydrolase	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	3.07027e-09
CP016102.1\|AXU48185.1\|4066350_4066830_-\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	2.99301e-69
CP016102.1\|AXU48184.1\|4064806_4066336_-\|lysyl-tRNA-synthetase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
CP016102.1\|AXU48174.1\|4051526_4051955_+\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	5.08799e-36
CP016102.1\|AXU48192.1\|4073869_4075258_-\|ATPase	gnl\|CDD\|274129	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). [Protein synthesis, tRNA and rRNA base modification].	9.7353e-71
CP016102.1\|AXU48182.1\|4058729_4058921_-\|hypothetical-protein	gnl\|CDD\|377214	pfam04070, DUF378, Domain of unknown function (DUF378). Predicted transmembrane domain of unknown function. The majority of the family have two predicted transmembrane regions.	4.45287e-17
CP016102.1\|AXU48173.1\|4050059_4051490_+\|nicotinate-phosphribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
CP016102.1\|AXU48180.1\|4056355_4057045_-\|thymidylate-kinase	gnl\|CDD\|223203	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism].	4.17093e-36
CP016102.1\|AXU48176.1\|4052869_4053703_-\|corrin/porphyrin-methyltransferase	gnl\|CDD\|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	2.47321e-128
CP016102.1\|AXU48191.1\|4071865_4073836_-\|cell-division-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
CP016102.1\|AXU48190.1\|4070566_4071544_-\|bifunctional-biotin-operon-repressor/biotin--[acetyl-CoA-carboxylase]-synthetase	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	1.2418e-73
CP016102.1\|AXU48189.1\|4069605_4070574_-\|peptidase	gnl\|CDD\|239070	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-polymerized 6-aminohexanoate oligomers. Together with other nylon degradation enzymes, such as 6-aminohexanoate cyclic dimer hydrolase (EI) and 6-aminohexanoate dimer hydrolase (EII), EIII plays a role in the detoxification and biological removal of the synthetic by-products of nylon manufacture. EIII shows sequence similarity to L-aminopeptidase D-amidase/D-esterase (DmpA), an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. Like DmpA, EIII undergoes autocatalytic cleavage in front of a nucleophile to form a heterodimer. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.	4.12483e-125
CP016102.1\|AXU48179.1\|4055417_4056353_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|180132	PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated.	2.48099e-57
CP016102.1\|AXU48181.1\|4057165_4058575_-\|arginine-decarboxylase	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	6.30397e-121
CP016102.1\|AXU48188.1\|4068832_4069423_-\|membrane-protein	gnl\|CDD\|227029	COG4684, COG4684, Predicted membrane protein [Function unknown].	2.89958e-30
CP016102.1\|AXU48178.1\|4054527_4055421_-\|signal-peptidase-II	gnl\|CDD\|224688	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown].	2.232e-96
CP016102.1\|AXU48186.1\|4066938_4067907_-\|tRNA-dihydrouridine-synthase	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	1.20917e-153
CP016102.1\|AXU48187.1\|4068043_4068814_-\|pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	3.53007e-154
CP016102.1\|AXU48177.1\|4053703_4054450_-\|methyltransferase-small	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	9.15081e-98

>CP016102.1|AXU48182.1|4058729_4058921_-|hypothetical-protein
MKKVALILAIIGALNWGAIGILGTDLIGSIFGGTYEMVSRIIYFIVGLAGLYLIPSLMSDDRE
>CP016102.1|AXU48181.1|4057165_4058575_-|arginine-decarboxylase
MFIINELNKIVNEEVISFHMPGHKKGQIYKKLGYKDILENLYKMDTTEILGTDNLHFPEGIIKNSQEKASRVFKSDYTCYLVNGSSCGIQSAIMSVCRPKSKIITNRDCHQSVINGCILGDIDIEYVPCEVSEETNVLKGISISNVIDIVDKNLDAKAVLLTYPTYYGMTYDLEYICNYAHSKKMVVIVDEAHGAHLGLSERLPKTALEQGADIVVQSTHKTLPSFTQSSMIHIQGDRVDIDKILNMLRITESSSPSYLLLSSLELAVDIYENKGKELMEELLNNIRTFKNNVDSNINIYDTNDKTKIFISSKNMGLTGYELESILRNKYNIQVELSNYYGVLLICTIGNTAKDFSSLETALNNVIKEDFKFEKLENKKYPVVIPKKILTPREAFYKTKKSVKIYDSIGKICGECIVPYPPGISVISPGEVISKEIIDYLMFCHSKGMIVSGLKDVDLNFIQVIDLEDI
>CP016102.1|AXU48180.1|4056355_4057045_-|thymidylate-kinase
MKGKLIIIESGSDASGKATQTEILYERLKKEGYMIKKVEYPNYESPSSALVKMYLKGDFGKNASDVDPYIASTFFTADRYASFKTDWEEFYNEGGIIIADRYTTSNMVHQASKMDICDREEYLNWLADYEFNLFKIPKPDCVIFLDVPIEFSEKLMENRKNKITGEEKKDIHESDIEYLEKSYNNALYIADKYDWKKINCVLDNKLRSIESIHNEIYKIVLDSIKSMER
>CP016102.1|AXU48179.1|4055417_4056353_-|DNA-polymerase-III-subunit-delta'
MYFENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLENSPDYVLIKPDGNSIKIAQIRNLQSDIVIRPHKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLKRYLINTGIEEERAQLLAIFSRGSIENALNLSQSSEFSMMREDIQQYIQIMLDKNIVEILNIPNNMEKYRGKIIALLDMMINYFRDIIILKENVNKNMLINVDKLVFIQNMSGKISYSQLSKIIDIIEDAKSKIKSNCNFNISIQVMSLNIYEVIK
>CP016102.1|AXU48178.1|4054527_4055421_-|signal-peptidase-II
MIKIVGIRFKSAGKIYYFDPVDFNIEQDMDVVVETARGLEYGKVVVGPKDMDESELVSPLKPIIRIATEEDKKVYLENKEKAKETFELCQQKIKEHELTMFLIDCEYTFDRNKLIFYFTAEGRIDFRELVKDLAAIFKTRIELRQIGVRDEAKSIGGLGPCGRKLCCSSWLGDFQPVSIKMAKDQSLSLNPTKISGICGRLFCCLKYEHDVYSEAIEKMPVVGALVQSDDGKGKVVEVNPLLEQIKVEFQDKTVKIYTREDIKILREPKKCDGCGGKCKDNDGLDEATLRELKKLED
>CP016102.1|AXU48177.1|4053703_4054450_-|methyltransferase-small
MQLKDSERIDDLQLKGLKIIQDTNGFCFGIDAVLLANFTKIKKDAKVVDLGTGTGIIPILIAGKSEAKKIIGVEIQEDVYEMATRSVKLNGLEERVKIINEDIKYIDKVLDVNGYHVVTSNPPYMHIDGIKNPNDKKAISRHEVRCNLEDVIRAASRLVMPRGKFFMIHRPTRLVDIITLGRKYKLEPKVIQFVHPRPQKAPNLVLVQFVKDGRPELKILDPLYVYGEDGNYTKELKAIYNNKDIGEL
>CP016102.1|AXU48176.1|4052869_4053703_-|corrin/porphyrin-methyltransferase
MSGKLYICPTPIGNLEDITYRTLRILKEVDLIAAEDTRHSIKLLNHFEISKPLTSYHEHNKDSKGDYLINKLIDGENIALISDAGMPGISDPGEEIIKQAIQNNIEIEVLPGATAFVTALVGSGMDTHKFVFEGFLDRDKKVRKAQLEELKEESRTIIFYESPHRLKDTLKDMLKILGNRNISINRELTKKYQEIIRENIETTIKIFEEKEVRGEFVLIVEGFHGEKSKKENYDGLTDREYVLKLIESGMNKKDAIKIVCKDRKLKKDVVYKQVLDL
>CP016102.1|AXU48175.1|4052142_4052847_-|polynucleotide-adenylyltransferase/metal-dependent-phosphohydrolase
MEIGKIIIESLKREDTHKIFIELDNKHELEKIIPKISCMKSVGECKYHVVNCFEHSINALKELEIVLNDKDFFPIHLRKHVSNYLNTYTEKGINKLHVLKLGTFLHDIGKPDSMTLDETGRVHFTNHEKIGAQIIDNMGIKLELSTETYRLISKYVRYHMILLSLYKKNDLSRKELINVFNLVDEDTIGVIMLGYADIVSTVKLLGKSGEVSVLKTYMEYILTNYLYKSNYTHV
>CP016102.1|AXU48174.1|4051526_4051955_+|AsnC-family-transcriptional-regulator
MDVTDYRIIEILQDDGRISMKDLGKIVGLTSPAVSERVKRLEESGVIEGYKAIVNPDSLGRVIKAFIHISLPSNGYTEFIESAAKDPRIVECHHITGDDCLLLKVIVKDMYELENVIDTIKKIGSTKTSVILSTPIQAKSIL
>CP016102.1|AXU48173.1|4050059_4051490_+|nicotinate-phosphribosyltransferase
MRNLTLLTDLYQLTMLNGYFEKNIHEDIVVFDMFFRKNACDGGYTIVCGIDQVVEYIDNLHFSDEDLEYLKNLNLFSDKFLKFLKEFKFTGDIYAVEEGTIMFPNEPLITVKAPLYQAQLIETALLTIVNFQSLIATKASRVCFAAQGDPVFEFGLRRAQGPDAGIYGARAAVVGGCAGTANVLAGKMFDIPIIGTQAHSWVQKFDNELEAFQAYADVYPDKCLLLVDTYDVLNSGVPNAIKVFKNISEKGYKPMGIRLDSGDLAYLSKEAKKQLDNAGFSDISITASNDLDEYTITSLKAEGATINSWGVGTKLITSFDSPSLGGVYKLAASCEKGVLEPKIKISENPEKINNPGYKKVIRIYNEDNKAEADLIMLHDEVIDESKPLEIFHPTYTWKTKVFTNYKVKELLKPLYIKGRCKYNKKAVLEIKNHVQYELSTIWEQYKRLSKPHIYKVDLSRNLWYLKTQMIDSKKVL
>CP016102.1|AXU48183.1|4064303_4064498_-|hypothetical-protein
MFQVINFLCLFCVGFLVLDVMIYFCKDAMDIFEGTTNVNKVKSINVWADRVRANSYSYENKIAK
>CP016102.1|AXU48184.1|4064806_4066336_-|lysyl-tRNA-synthetase
MKNNQQSNEEAQIQEDLSEVLQVRRDKLKKLQESGRDPFKESRYDRTHYSMDIKDNFDSLEGKTTKIAGRIMSKRIQGKAGFIDIQDQEGRIQSYVRLDAIGEEEYSVFSTYDIGDIVGIEGEIFKTKKGEISVKAKSVVLLCKSLQVLPEKYHGLKDQELRYRQRYVDLIVNPEVKNAFLIRTKALKALRAYLDDRGFLEVETPILNTIAGGANARPFITNHNTLHIPMYLRIANELYLKRLIVGGFDKVYEMGRMFRNEGMDLKHNPEYTAIELYQAYADYTDMMEITENVIAHMAEVATGSMIVNYQGTEINFTPPWKRMSMEDCVKEYSGVDFSTINTDEEALEVAREKGIEIKPGMRRGEVINAFFEEFGEDKLIQPTFITHHPVEVSPLSKRNVEDPRRTDRFEAFANKWELANAFSELNDPIDQKGRFIDQLRKRELGDDEAFEMDEDFLKALEVGLPPTGGLGIGIDRVIMLLTNSPSIRDVLLFPTMKPIDNNPNKDEEN
>CP016102.1|AXU48185.1|4066350_4066830_-|transcription-elongation-factor-GreA
MEENKEFLLTQEGYDKLEEELENLKVVKRKEVAERIKVAISFGDLSENAEYDEAKKEQAQVEERILKLENMVRKAVIIDESKIDLNVVTIGSIVKVKDLEFDEEVEYTIVGSTEADPYDGKISNESPVGKALLGRAAKEVVEVQVPDGVAKFEILEIRR
>CP016102.1|AXU48186.1|4066938_4067907_-|tRNA-dihydrouridine-synthase
MKIGNLKLKNKVFLSPMAGVTDLPFRLICKEQGCGLLYTEMINGKALCYDDENTKKMLKIEEEEHPVAVQIFGSEPEFMGRAAEIMNDYSNEILDINMGCPAPKVVKNGDGSALMKNPKLAEEVLRAVVKNSKKPVTLKIRKGWDDNSVNAVEIAKIAEDCGISALAIHGRTREQFYSGKADWDIIAEIKKNLSIPVIGNGDVFTIEDSINMLDKTGCDAIMIGRGAQGNPWIFKRINHYMNTGEILPEPTLNEKISTAIKHLKLAVEEHGEYVAVREMRKHIAWYLKGLRNSAKLRDEINKIEDYQEVVSKLEYYMEDSLT
>CP016102.1|AXU48187.1|4068043_4068814_-|pantothenate-kinase
MLLVFDVGNTNMVLGIYKGDKLVNYWRIKTDREKTSDEYGILISNLFDYDNVNISDIDDVIISSVVPNVMHSLENFCIKYCKKQPLIVGPGIKTGLNIKYDNPKQVGADRIVNAVAGIEKYGAPSILVDFGTATTFCAISEKGEYLGGTIAPGIKISSEALFQSASKLPRVELAKPGMTICKSTVSAMQSGIIYGYVGLVDKIISMMKKELNCDDVKVIATGGLAKLIASETKSIDYVDGFLTLEGLRIIYEKNQE
>CP016102.1|AXU48188.1|4068832_4069423_-|membrane-protein
MMNTSASVRKVNVRKMTIIGVLSAISIMLSMTPLGFIPVGPTKATIMHIPVIIGAIMEGPIVGAAIGFIFGISSLLNAITNPTVTSFVFINPLVSILPRVMIGVLAYYVYQLIIKATNKVYMSGLITGAIGSLLNTAGVLGMIYVLYADKYLHAMGKSGSAGKVIMALAAANGVPEAIVGALVVAAVATVLKKSKK
>CP016102.1|AXU48189.1|4069605_4070574_-|peptidase
MYNNILDIEGLKVGQVEDRNGLTGCTVVICEEGATCGVDVRGSAPGTRETDLLDPVNMVQKVHAVVLAGGSAYGLESTCGVSRYLEEKGIGFDVGVGKVPIVVGAVLFDLGVGSFKCRPDLKMGYRACEVANTDILNQGNYGAGCGATVGKIRGQEYAMKGGIGSYSIKLDNGLVVSALIAVNALGDVYENGKVIAGALNDKKTETIDTYKLMKQGESKGGFSVDNTTIGIIATNAKLTKAGCKKISQMGHDGYAKAIFPIHTPHDGDTIFTISTGEIEADITLVGSLAVEVVEKSIINAVKKADSVENIMAYKDIIKKREI
>CP016102.1|AXU48190.1|4070566_4071544_-|bifunctional-biotin-operon-repressor/biotin--[acetyl-CoA-carboxylase]-synthetase
MRDKIIEIILNNKSEFISGEELSKQLGVSRAAIWKHMKALKEEGYNIESVNKKGYRLAENPTDLLSPQNIYYKLDTEFIGKNIEHLETIDSTNEHAKRTAINSVDGTVILSEHQDMGKGRLGRRWDSKPHEGIWMSIILKPDMEPFKAPFITLIAGASVTKALNNLGANTLIKWPNDVILNGKKICGILTELSAEIERTNYIVLGIGINVKIMDFEQEIADKATSLYKEGYMLPRVDIVRNVLTEFEKLYLDYTVNNSKEKTLKICRDYSAIIDKNIYVLKGDNKELVKCLDINEEGNLLVQRSDGSIKEIISGEVSIRGEKGYV
>CP016102.1|AXU48191.1|4071865_4073836_-|cell-division-protein
MNKLLKGAGFYLLVFIIIVGIVQFSGKPTEKIKDLKFSEVYRELTDENISRLYFVNQTSVEGTIKDTNTKFKSYVPTEVMGNKLADEVLDQAKAGKLTFGGEAKPSTPWFVEMLPTLLLIFFMVIIWFVFMNQSQGGGGKVMSFGKSKAKVHKDDEKTRVTFKDVAGLDEEKEDLQEVVDFLKNPKKYIELGARIPKGMLMVGPPGTGKTYLSRAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKSAPAIIFIDEIDAVGRKRGAGLGGGHDEREQTLNQLLVEMDGFGVNQGIIIMAATNRPDILDPALLRPGRFDRQVVVGTPDVKGREAIFKVHSRNKPLSDDVKMDVLARRTPGFTPADIENLMNEAAILTARKREKKIKMETIEEAITKVIAGVAKKSKVISEKERRLTAYHEGGHAVCAHVLEEVSPVHQVTIVPRGRAGGFTMQLPVEDKFYATKNEMKENIVVLLGGRVAEELVLKDVSTGASNDLERVTATARSMVTKYGMSSKLGPMSFDSDDEVFLGNSFSSKRNYSEEVAFEIDQETKRIVDGAYDKTRSILQENMDRLEYVAQALLIYETLDAEQFVKAFNKELPLNEIENAVTEENSSKEIEEQLTIKLEKDEEERNNVIDINKNLEDKSDKDK
>CP016102.1|AXU48192.1|4073869_4075258_-|ATPase
MIFDKVLSTINKHNLIQKGDKIVLGLSGGPDSVCLLHVLNRLKKDFNIEIYAAHLNHQIRGIEAQKDALYVSKLCEDMGIVFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLNDQAETVMMRIMRGTGLKGLKGIDYIRDNCIIRPILDVERNEIEEYCEAYNLNPRIDKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVSNIKEKGFVEINLDDFVCLHDAIKVRVLRNSIKHILGDTNFVDQRHIEDIMSLEDNSKVNKMLTLPRNIFVYRKKDSIILTNEEIVNEEIEFYYNVPSNGFIKIKELKQIIETQVMSIDRYKSMKLDNSSKGFDFNKVKGGIVIRSRRQGDKIKLAMGSKKVKDLFIDLKIPREERCKIPIITDSEGIICVGDYKISENYKIDENTKEVLKINFNKL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP016102_1	1.1\|32118\|31\|CP016102\|CRISPRCasFinder	32118-32148	31	CP016102.1	17782-17812	0	1.0
CP016102_1	1.1\|32118\|31\|CP016102\|CRISPRCasFinder	32118-32148	31	CP016102.1	1158894-1158924	0	1.0
CP016102_20	20.1\|4062318\|73\|CP016102\|CRISPRCasFinder	4062318-4062390	73	CP016102.1	32118-32190	13	0.822
CP016102_20	20.1\|4062318\|73\|CP016102\|CRISPRCasFinder	4062318-4062390	73	CP016102.1	1158894-1158966	13	0.822

1. spacer 1.1|32118|31|CP016102|CRISPRCasFinder matches to position: 17782-17812, mismatch: 0, identity: 1.0

agaataaactgaacgcatgtgaagtttgttt	CRISPR spacer
agaataaactgaacgcatgtgaagtttgttt	Protospacer
*******************************

2. spacer 1.1|32118|31|CP016102|CRISPRCasFinder matches to position: 1158894-1158924, mismatch: 0, identity: 1.0

agaataaactgaacgcatgtgaagtttgttt	CRISPR spacer
agaataaactgaacgcatgtgaagtttgttt	Protospacer
*******************************

3. spacer 20.1|4062318|73|CP016102|CRISPRCasFinder matches to position: 32118-32190, mismatch: 13, identity: 0.822

ggataaatcccgttgcttaaagtgctaacgcacagcgccaacaaacaaacttcacatgcg	CRISPR spacer
ggataaatcccgttgcttaaagtgctaacgcacagcgccaacaaacaaacttcacatgcg	Protospacer
************************************************************

4. spacer 20.1|4062318|73|CP016102|CRISPRCasFinder matches to position: 1158894-1158966, mismatch: 13, identity: 0.822

ggataaatcccgttgcttaaagtgctaacgcacagcgccaacaaacaaacttcacatgcg	CRISPR spacer
ggataaatcccgttgcttaaagtgctaacgcacagcgccaacaaacaaacttcacatgcg	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP016102_6	6.1\|1568811\|25\|CP016102\|PILER-CR	1568811-1568835	25	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	50448-50472	0	1.0
CP016102_6	6.3\|1568800\|36\|CP016102\|CRISPRCasFinder	1568800-1568835	36	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	50447-50482	0	1.0
CP016102_7	7.4\|1678418\|36\|CP016102\|CRISPRCasFinder,CRT	1678418-1678453	36	NC_011398	Clostridium phage phiCD27, complete genome	22207-22242	0	1.0
CP016102_7	7.5\|1678483\|37\|CP016102\|CRISPRCasFinder,CRT	1678483-1678519	37	HG531805	Clostridium phage CDMH1 complete genome	45157-45193	0	1.0
CP016102_9	9.2\|1772648\|37\|CP016102\|CRT	1772648-1772684	37	HG531805	Clostridium phage CDMH1 complete genome	13828-13864	0	1.0
CP016102_9	9.3\|1772714\|36\|CP016102\|CRT	1772714-1772749	36	LN681542	Clostridium phage phiMMP03, complete genome	14215-14250	0	1.0
CP016102_9	9.3\|1772714\|36\|CP016102\|CRT	1772714-1772749	36	NC_009231	Clostridium phage phiC2, complete genome	14246-14281	0	1.0
CP016102_9	9.3\|1772714\|36\|CP016102\|CRT	1772714-1772749	36	LN681541	Clostridium phage phiMMP01, complete genome	14215-14250	0	1.0
CP016102_10	10.2\|1904197\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904197-1904232	36	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	3114-3149	0	1.0
CP016102_10	10.2\|1904197\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904197-1904232	36	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	118851-118886	0	1.0
CP016102_10	10.2\|1904197\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904197-1904232	36	LN681537	Clostridium phage phiCD211, complete genome	127713-127748	0	1.0
CP016102_12	12.13\|2822357\|36\|CP016102\|CRISPRCasFinder	2822357-2822392	36	NC_048642	Clostridium phage CDKM9, complete genome	18001-18036	0	1.0
CP016102_1	1.1\|32118\|31\|CP016102\|CRISPRCasFinder	32118-32148	31	NZ_CP033215	Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence	3094-3124	1	0.968
CP016102_7	7.2\|1678285\|37\|CP016102\|CRISPRCasFinder,CRT	1678285-1678321	37	HM568888	Clostridium phage phiCD38-2, complete genome	1916-1952	1	0.973
CP016102_7	7.9\|1678745\|36\|CP016102\|CRISPRCasFinder,CRT	1678745-1678780	36	AY855346	Clostridium difficile bacteriophage phi CD119, complete genome	20150-20185	1	0.972
CP016102_7	7.9\|1678745\|36\|CP016102\|CRISPRCasFinder,CRT	1678745-1678780	36	NC_007917	Clostridium phage phi CD119, complete genome	20150-20185	1	0.972
CP016102_7	7.9\|1678745\|36\|CP016102\|CRISPRCasFinder,CRT	1678745-1678780	36	NC_028996	Clostridium phage phiCDHM19, complete genome	20404-20439	1	0.972
CP016102_7	7.9\|1678745\|36\|CP016102\|CRISPRCasFinder,CRT	1678745-1678780	36	NC_028838	Clostridium phage phiCD506, complete genome	13735-13770	1	0.972
CP016102_7	7.9\|1678745\|36\|CP016102\|CRISPRCasFinder,CRT	1678745-1678780	36	LN681538	Clostridium phage phiCD481-1, complete genome	13762-13797	1	0.972
CP016102_8	8.1\|1769688\|37\|CP016102\|PILER-CR,CRT	1769688-1769724	37	LN681542	Clostridium phage phiMMP03, complete genome	16005-16041	1	0.973
CP016102_8	8.1\|1769688\|37\|CP016102\|PILER-CR,CRT	1769688-1769724	37	NC_009231	Clostridium phage phiC2, complete genome	16036-16072	1	0.973
CP016102_8	8.1\|1769688\|37\|CP016102\|PILER-CR,CRT	1769688-1769724	37	LN681541	Clostridium phage phiMMP01, complete genome	16005-16041	1	0.973
CP016102_9	9.5\|1772648\|38\|CP016102\|CRISPRCasFinder	1772648-1772685	38	HG531805	Clostridium phage CDMH1 complete genome	13828-13865	1	0.974
CP016102_9	9.6\|1772714\|37\|CP016102\|CRISPRCasFinder	1772714-1772750	37	LN681542	Clostridium phage phiMMP03, complete genome	14215-14251	1	0.973
CP016102_9	9.6\|1772714\|37\|CP016102\|CRISPRCasFinder	1772714-1772750	37	NC_009231	Clostridium phage phiC2, complete genome	14246-14282	1	0.973
CP016102_9	9.6\|1772714\|37\|CP016102\|CRISPRCasFinder	1772714-1772750	37	LN681541	Clostridium phage phiMMP01, complete genome	14215-14251	1	0.973
CP016102_10	10.3\|1904262\|35\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904262-1904296	35	MK473382	Clostridium phage JD032, complete genome	7166-7200	1	0.971
CP016102_10	10.5\|1904391\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904391-1904426	36	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	76310-76345	1	0.972
CP016102_10	10.5\|1904391\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904391-1904426	36	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	97862-97897	1	0.972
CP016102_10	10.5\|1904391\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904391-1904426	36	MF547662	Clostridioides phage LIBA6276, complete genome	51715-51750	1	0.972
CP016102_10	10.5\|1904391\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904391-1904426	36	MF547663	Clostridioides phage LIBA2945, complete genome	51565-51600	1	0.972
CP016102_10	10.5\|1904391\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904391-1904426	36	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	45655-45690	1	0.972
CP016102_10	10.5\|1904391\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904391-1904426	36	LN681537	Clostridium phage phiCD211, complete genome	54517-54552	1	0.972
CP016102_12	12.13\|2822357\|36\|CP016102\|CRISPRCasFinder	2822357-2822392	36	LN681539	Clostridium phage phiCD505, complete genome	18063-18098	1	0.972
CP016102_12	12.13\|2822357\|36\|CP016102\|CRISPRCasFinder	2822357-2822392	36	JX145341	Clostridium phage phiMMP02, complete genome	17969-18004	1	0.972
CP016102_19	19.7\|3714241\|21\|CP016102\|CRT	3714241-3714261	21	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	176923-176943	1	0.952
CP016102_19	19.8\|3714286\|21\|CP016102\|CRT	3714286-3714306	21	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	176923-176943	1	0.952
CP016102_7	7.2\|1678285\|37\|CP016102\|CRISPRCasFinder,CRT	1678285-1678321	37	KU057941	Clostridium phage CDSH1, complete genome	1888-1924	2	0.946
CP016102_7	7.2\|1678285\|37\|CP016102\|CRISPRCasFinder,CRT	1678285-1678321	37	NC_028905	Clostridium phage phiCD111, complete genome	1916-1952	2	0.946
CP016102_7	7.2\|1678285\|37\|CP016102\|CRISPRCasFinder,CRT	1678285-1678321	37	LN881738	Escherichia phage slur17, complete genome	18513-18549	2	0.946
CP016102_7	7.3\|1678351\|38\|CP016102\|CRISPRCasFinder,CRT	1678351-1678388	38	NC_048665	Clostridium phage phiCDHM14, complete genome	23559-23596	2	0.947
CP016102_7	7.3\|1678351\|38\|CP016102\|CRISPRCasFinder,CRT	1678351-1678388	38	HG796225	Clostridium phage phiCDHM13 complete genome	23060-23097	2	0.947
CP016102_7	7.3\|1678351\|38\|CP016102\|CRISPRCasFinder,CRT	1678351-1678388	38	LN681538	Clostridium phage phiCD481-1, complete genome	22799-22836	2	0.947
CP016102_7	7.3\|1678351\|38\|CP016102\|CRISPRCasFinder,CRT	1678351-1678388	38	HG798901	Clostridium phage phiCDHM11 complete genome	23059-23096	2	0.947
CP016102_7	7.6\|1678549\|37\|CP016102\|CRISPRCasFinder,CRT	1678549-1678585	37	GU949551	Clostridium phage phiCD6356, complete genome	27126-27162	2	0.946
CP016102_7	7.9\|1678745\|36\|CP016102\|CRISPRCasFinder,CRT	1678745-1678780	36	NC_048665	Clostridium phage phiCDHM14, complete genome	13309-13344	2	0.944
CP016102_7	7.9\|1678745\|36\|CP016102\|CRISPRCasFinder,CRT	1678745-1678780	36	MK473382	Clostridium phage JD032, complete genome	21368-21403	2	0.944
CP016102_7	7.9\|1678745\|36\|CP016102\|CRISPRCasFinder,CRT	1678745-1678780	36	HG796225	Clostridium phage phiCDHM13 complete genome	13277-13312	2	0.944
CP016102_7	7.9\|1678745\|36\|CP016102\|CRISPRCasFinder,CRT	1678745-1678780	36	HG798901	Clostridium phage phiCDHM11 complete genome	13276-13311	2	0.944
CP016102_7	7.10\|1678810\|38\|CP016102\|CRISPRCasFinder,CRT	1678810-1678847	38	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	94861-94898	2	0.947
CP016102_8	8.1\|1769688\|37\|CP016102\|PILER-CR,CRT	1769688-1769724	37	HG531805	Clostridium phage CDMH1 complete genome	17198-17234	2	0.946
CP016102_8	8.4\|1769687\|38\|CP016102\|CRISPRCasFinder	1769687-1769724	38	LN681542	Clostridium phage phiMMP03, complete genome	16005-16042	2	0.947
CP016102_8	8.4\|1769687\|38\|CP016102\|CRISPRCasFinder	1769687-1769724	38	NC_009231	Clostridium phage phiC2, complete genome	16036-16073	2	0.947
CP016102_8	8.4\|1769687\|38\|CP016102\|CRISPRCasFinder	1769687-1769724	38	LN681541	Clostridium phage phiMMP01, complete genome	16005-16042	2	0.947
CP016102_10	10.1\|1904132\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904132-1904167	36	MF547663	Clostridioides phage LIBA2945, complete genome	118698-118733	2	0.944
CP016102_10	10.1\|1904132\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904132-1904167	36	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	117743-117778	2	0.944
CP016102_10	10.1\|1904132\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904132-1904167	36	LN681537	Clostridium phage phiCD211, complete genome	126605-126640	2	0.944
CP016102_10	10.1\|1904132\|36\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904132-1904167	36	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	4222-4257	2	0.944
CP016102_10	10.6\|1904456\|38\|CP016102\|PILER-CR,CRISPRCasFinder,CRT	1904456-1904493	38	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	26432-26469	2	0.947
CP016102_12	12.13\|2822357\|36\|CP016102\|CRISPRCasFinder	2822357-2822392	36	KX228400	Clostridium phage CDKM15, complete genome	21206-21241	2	0.944
CP016102_7	7.2\|1678285\|37\|CP016102\|CRISPRCasFinder,CRT	1678285-1678321	37	NC_028958	Clostridium phage phiCD146, complete genome	1921-1957	3	0.919
CP016102_8	8.2\|1769754\|36\|CP016102\|PILER-CR,CRT	1769754-1769789	36	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	17906-17941	3	0.917
CP016102_8	8.4\|1769687\|38\|CP016102\|CRISPRCasFinder	1769687-1769724	38	HG531805	Clostridium phage CDMH1 complete genome	17198-17235	3	0.921
CP016102_12	12.6\|2822357\|42\|CP016102\|CRT	2822357-2822398	42	NC_048642	Clostridium phage CDKM9, complete genome	18001-18042	3	0.929
CP016102_4	4.1\|798448\|33\|CP016102\|CRISPRCasFinder	798448-798480	33	NZ_MG205641	Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence	15023-15055	4	0.879
CP016102_4	4.1\|798448\|33\|CP016102\|CRISPRCasFinder	798448-798480	33	NZ_MG205642	Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence	15023-15055	4	0.879
CP016102_6	6.1\|1568811\|25\|CP016102\|PILER-CR	1568811-1568835	25	MN856115	Bacteriophage sp. isolate 460, complete genome	4078-4102	4	0.84
CP016102_8	8.5\|1769753\|37\|CP016102\|CRISPRCasFinder	1769753-1769789	37	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	17905-17941	4	0.892
CP016102_6	6.1\|1568811\|25\|CP016102\|PILER-CR	1568811-1568835	25	NZ_CP051164	Geobacillus subterraneus strain CPW16 plasmid pBsrF30, complete sequence	10038-10062	5	0.8
CP016102_6	6.1\|1568811\|25\|CP016102\|PILER-CR	1568811-1568835	25	MN693026	Marine virus AFVG_117M72, complete genome	82935-82959	5	0.8
CP016102_12	12.6\|2822357\|42\|CP016102\|CRT	2822357-2822398	42	LN681539	Clostridium phage phiCD505, complete genome	18063-18104	5	0.881
CP016102_12	12.6\|2822357\|42\|CP016102\|CRT	2822357-2822398	42	JX145341	Clostridium phage phiMMP02, complete genome	17969-18010	5	0.881
CP016102_4	4.1\|798448\|33\|CP016102\|CRISPRCasFinder	798448-798480	33	NZ_MG205641	Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence	13139-13171	6	0.818
CP016102_4	4.1\|798448\|33\|CP016102\|CRISPRCasFinder	798448-798480	33	NZ_MG205642	Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence	13139-13171	6	0.818
CP016102_12	12.6\|2822357\|42\|CP016102\|CRT	2822357-2822398	42	KX228400	Clostridium phage CDKM15, complete genome	21206-21247	6	0.857
CP016102_19	19.2\|3713917\|30\|CP016102\|CRT	3713917-3713946	30	NC_007103	Bacillus cereus E33L plasmid pE33L466, complete sequence	140-169	6	0.8
CP016102_19	19.2\|3713917\|30\|CP016102\|CRT	3713917-3713946	30	NC_007103	Bacillus cereus E33L plasmid pE33L466, complete sequence	239-268	6	0.8
CP016102_19	19.2\|3713917\|30\|CP016102\|CRT	3713917-3713946	30	NZ_CP009967	Bacillus cereus E33L plasmid pBCO_1, complete sequence	321878-321907	6	0.8
CP016102_19	19.2\|3713917\|30\|CP016102\|CRT	3713917-3713946	30	MG209611	Aphanizomenon phage vB_AphaS-CL131, complete genome	32379-32408	6	0.8
CP016102_1	1.1\|32118\|31\|CP016102\|CRISPRCasFinder	32118-32148	31	MT533174	Escherichia phage CJ20, complete genome	109957-109987	7	0.774
CP016102_19	19.2\|3713917\|30\|CP016102\|CRT	3713917-3713946	30	NC_007103	Bacillus cereus E33L plasmid pE33L466, complete sequence	410-439	7	0.767
CP016102_19	19.2\|3713917\|30\|CP016102\|CRT	3713917-3713946	30	NZ_CP009967	Bacillus cereus E33L plasmid pBCO_1, complete sequence	321734-321763	7	0.767
CP016102_19	19.2\|3713917\|30\|CP016102\|CRT	3713917-3713946	30	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	72613-72642	7	0.767
CP016102_12	12.9\|2822094\|37\|CP016102\|CRISPRCasFinder	2822094-2822130	37	NZ_CP014325	Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence	55630-55666	8	0.784
CP016102_19	19.2\|3713917\|30\|CP016102\|CRT	3713917-3713946	30	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	73553-73582	8	0.733
CP016102_12	12.9\|2822094\|37\|CP016102\|CRISPRCasFinder	2822094-2822130	37	NZ_CP037437	Lactobacillus plantarum strain EM plasmid pEM8, complete sequence	21201-21237	9	0.757
CP016102_17	17.1\|3215655\|31\|CP016102\|CRISPRCasFinder	3215655-3215685	31	LR606148	Rhizobium sp. Q54 genome assembly, plasmid: 5	444883-444913	9	0.71
CP016102_12	12.13\|2822357\|36\|CP016102\|CRISPRCasFinder	2822357-2822392	36	NZ_CP015807	Borrelia mayonii strain MN14-1539 plasmid lp28-4	2136-2171	10	0.722
CP016102_12	12.13\|2822357\|36\|CP016102\|CRISPRCasFinder	2822357-2822392	36	NZ_CP015792	Borrelia mayonii strain MN14-1420 plasmid lp28-4, complete sequence	2136-2171	10	0.722
CP016102_11	11.3\|2732285\|37\|CP016102\|PILER-CR	2732285-2732321	37	NC_025449	Escherichia phage ECML-134, complete genome	64499-64535	11	0.703
CP016102_11	11.3\|2732285\|37\|CP016102\|PILER-CR	2732285-2732321	37	KM607002	Enterobacteria phage RB55, complete genome	68097-68133	11	0.703
CP016102_11	11.3\|2732285\|37\|CP016102\|PILER-CR	2732285-2732321	37	KJ477684	Enterobacteria phage T4 strain wild, complete genome	68134-68170	11	0.703
CP016102_11	11.3\|2732285\|37\|CP016102\|PILER-CR	2732285-2732321	37	HM137666	Enterobacteria phage T4T, complete genome	68133-68169	11	0.703
CP016102_11	11.3\|2732285\|37\|CP016102\|PILER-CR	2732285-2732321	37	NC_000866	Enterobacteria phage T4, complete genome	68154-68190	11	0.703
CP016102_11	11.3\|2732285\|37\|CP016102\|PILER-CR	2732285-2732321	37	L13089	Bacteriophage T4 msp1-msp8 genes, complete cds's	2697-2733	11	0.703
CP016102_11	11.3\|2732285\|37\|CP016102\|PILER-CR	2732285-2732321	37	KJ477686	Enterobacteria phage T4 strain GT7, complete genome	68132-68168	11	0.703
CP016102_11	11.3\|2732285\|37\|CP016102\|PILER-CR	2732285-2732321	37	X57093	Bacteriophage T4 orfs between tRNA and e genes	238-274	11	0.703
CP016102_11	11.3\|2732285\|37\|CP016102\|PILER-CR	2732285-2732321	37	KJ477685	Enterobacteria phage T4 strain 147, complete genome	66027-66063	11	0.703
CP016102_11	11.3\|2732285\|37\|CP016102\|PILER-CR	2732285-2732321	37	KM607003	Enterobacteria phage RB59, complete genome	68110-68146	11	0.703
CP016102_19	19.3\|3713971\|48\|CP016102\|CRT	3713971-3714018	48	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	90205-90252	15	0.688
CP016102_20	20.1\|4062318\|73\|CP016102\|CRISPRCasFinder	4062318-4062390	73	NZ_CP033215	Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence	3052-3124	23	0.685

1. spacer 6.1|1568811|25|CP016102|PILER-CR matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 0, identity: 1.0

tattacatctaattctgtctcttca	CRISPR spacer
tattacatctaattctgtctcttca	Protospacer
*************************

2. spacer 6.3|1568800|36|CP016102|CRISPRCasFinder matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 0, identity: 1.0

aagttaaatttattacatctaattctgtctcttcat	CRISPR spacer
aagttaaatttattacatctaattctgtctcttcat	Protospacer
************************************

3. spacer 7.4|1678418|36|CP016102|CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 0, identity: 1.0

ttggaaataagtataaagacagtgatatggaaatgg	CRISPR spacer
ttggaaataagtataaagacagtgatatggaaatgg	Protospacer
************************************

4. spacer 7.5|1678483|37|CP016102|CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 0, identity: 1.0

tatccatttcatatttagataaaatctctttaaatgc	CRISPR spacer
tatccatttcatatttagataaaatctctttaaatgc	Protospacer
*************************************

5. spacer 9.2|1772648|37|CP016102|CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 0, identity: 1.0

actaaattagaggtcgagaaggctattgaatcaaaag	CRISPR spacer
actaaattagaggtcgagaaggctattgaatcaaaag	Protospacer
*************************************

6. spacer 9.3|1772714|36|CP016102|CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 0, identity: 1.0

tacacattttctcaaatttggacttcaattaaaaat	CRISPR spacer
tacacattttctcaaatttggacttcaattaaaaat	Protospacer
************************************

7. spacer 9.3|1772714|36|CP016102|CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 0, identity: 1.0

tacacattttctcaaatttggacttcaattaaaaat	CRISPR spacer
tacacattttctcaaatttggacttcaattaaaaat	Protospacer
************************************

8. spacer 9.3|1772714|36|CP016102|CRT matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 0, identity: 1.0

tacacattttctcaaatttggacttcaattaaaaat	CRISPR spacer
tacacattttctcaaatttggacttcaattaaaaat	Protospacer
************************************

9. spacer 10.2|1904197|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tctatatctgtttcaaaatctgttatgaaatactcc	CRISPR spacer
tctatatctgtttcaaaatctgttatgaaatactcc	Protospacer
************************************

10. spacer 10.2|1904197|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 0, identity: 1.0

tctatatctgtttcaaaatctgttatgaaatactcc	CRISPR spacer
tctatatctgtttcaaaatctgttatgaaatactcc	Protospacer
************************************

11. spacer 10.2|1904197|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 0, identity: 1.0

tctatatctgtttcaaaatctgttatgaaatactcc	CRISPR spacer
tctatatctgtttcaaaatctgttatgaaatactcc	Protospacer
************************************

12. spacer 12.13|2822357|36|CP016102|CRISPRCasFinder matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 0, identity: 1.0

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
tacattatataagatagctaaaaatcttttaggcaa	Protospacer
************************************

13. spacer 1.1|32118|31|CP016102|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.968

agaataaactgaacgcatgtgaagtttgttt	CRISPR spacer
agaataaactgaacacatgtgaagtttgttt	Protospacer
**************.****************

14. spacer 7.2|1678285|37|CP016102|CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.973

tacatcctcattaatttctttgctatcccaaacagca	CRISPR spacer
tacatcctcattagtttctttgctatcccaaacagca	Protospacer
*************.***********************

15. spacer 7.9|1678745|36|CP016102|CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 1, identity: 0.972

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatgtcaatatcaaggatacaaaattt	Protospacer
******************.*****************

16. spacer 7.9|1678745|36|CP016102|CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 1, identity: 0.972

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatgtcaatatcaaggatacaaaattt	Protospacer
******************.*****************

17. spacer 7.9|1678745|36|CP016102|CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 1, identity: 0.972

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatgtcaatatcaaggatacaaaattt	Protospacer
******************.*****************

18. spacer 7.9|1678745|36|CP016102|CRISPRCasFinder,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 1, identity: 0.972

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatgtcaatatcaaggatacaaaattt	Protospacer
******************.*****************

19. spacer 7.9|1678745|36|CP016102|CRISPRCasFinder,CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 1, identity: 0.972

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatgtcaatatcaaggatacaaaattt	Protospacer
******************.*****************

20. spacer 8.1|1769688|37|CP016102|PILER-CR,CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 1, identity: 0.973

ttatctgcgtcttctgaaatagcatactcttcaagag	CRISPR spacer
ttatctgcatcttctgaaatagcatactcttcaagag	Protospacer
********.****************************

21. spacer 8.1|1769688|37|CP016102|PILER-CR,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 1, identity: 0.973

ttatctgcgtcttctgaaatagcatactcttcaagag	CRISPR spacer
ttatctgcatcttctgaaatagcatactcttcaagag	Protospacer
********.****************************

22. spacer 8.1|1769688|37|CP016102|PILER-CR,CRT matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 1, identity: 0.973

ttatctgcgtcttctgaaatagcatactcttcaagag	CRISPR spacer
ttatctgcatcttctgaaatagcatactcttcaagag	Protospacer
********.****************************

23. spacer 9.5|1772648|38|CP016102|CRISPRCasFinder matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 1, identity: 0.974

actaaattagaggtcgagaaggctattgaatcaaaagg	CRISPR spacer
actaaattagaggtcgagaaggctattgaatcaaaaga	Protospacer
*************************************.

24. spacer 9.6|1772714|37|CP016102|CRISPRCasFinder matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 1, identity: 0.973

tacacattttctcaaatttggacttcaattaaaaatg	CRISPR spacer
tacacattttctcaaatttggacttcaattaaaaata	Protospacer
************************************.

25. spacer 9.6|1772714|37|CP016102|CRISPRCasFinder matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 1, identity: 0.973

tacacattttctcaaatttggacttcaattaaaaatg	CRISPR spacer
tacacattttctcaaatttggacttcaattaaaaata	Protospacer
************************************.

26. spacer 9.6|1772714|37|CP016102|CRISPRCasFinder matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 1, identity: 0.973

tacacattttctcaaatttggacttcaattaaaaatg	CRISPR spacer
tacacattttctcaaatttggacttcaattaaaaata	Protospacer
************************************.

27. spacer 10.3|1904262|35|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 1, identity: 0.971

aataacttatctatgaaattaaatactgtaacttg	CRISPR spacer
aatagcttatctatgaaattaaatactgtaacttg	Protospacer
****.******************************

28. spacer 10.5|1904391|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.972

tttcaacagtggtggtggtcgaggagtagaagttct	CRISPR spacer
tttcaacagtggtggtggtcgaggagtagaagtttt	Protospacer
**********************************.*

29. spacer 10.5|1904391|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.972

tttcaacagtggtggtggtcgaggagtagaagttct	CRISPR spacer
tttcaacagtggtggtggtcgaggagtagaagtttt	Protospacer
**********************************.*

30. spacer 10.5|1904391|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 1, identity: 0.972

tttcaacagtggtggtggtcgaggagtagaagttct	CRISPR spacer
tttcaacagtggtggtggtcgaggagtagaagtttt	Protospacer
**********************************.*

31. spacer 10.5|1904391|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 1, identity: 0.972

tttcaacagtggtggtggtcgaggagtagaagttct	CRISPR spacer
tttcaacagtggtggtggtcgaggagtagaagtttt	Protospacer
**********************************.*

32. spacer 10.5|1904391|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 1, identity: 0.972

tttcaacagtggtggtggtcgaggagtagaagttct	CRISPR spacer
tttcaacagtggtggtggtcgaggagtagaagtttt	Protospacer
**********************************.*

33. spacer 10.5|1904391|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 1, identity: 0.972

tttcaacagtggtggtggtcgaggagtagaagttct	CRISPR spacer
tttcaacagtggtggtggtcgaggagtagaagtttt	Protospacer
**********************************.*

34. spacer 12.13|2822357|36|CP016102|CRISPRCasFinder matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 1, identity: 0.972

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
tacattatataagatagctaaaaatcttttaggtaa	Protospacer
*********************************.**

35. spacer 12.13|2822357|36|CP016102|CRISPRCasFinder matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 1, identity: 0.972

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
tacattatataagatagctaaaaatcttttaggtaa	Protospacer
*********************************.**

36. spacer 19.7|3714241|21|CP016102|CRT matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 1, identity: 0.952

taccaaaccatttgctcccgt	CRISPR spacer
taccaaaccagttgctcccgt	Protospacer
********** **********

37. spacer 19.8|3714286|21|CP016102|CRT matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 1, identity: 0.952

taccaaaccatttgctcccgt	CRISPR spacer
taccaaaccagttgctcccgt	Protospacer
********** **********

38. spacer 7.2|1678285|37|CP016102|CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.946

tacatcctcattaatttctttgctatcccaaacagca	CRISPR spacer
tacatcctcattagtttctttactatcccaaacagca	Protospacer
*************.*******.***************

39. spacer 7.2|1678285|37|CP016102|CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.946

tacatcctcattaatttctttgctatcccaaacagca	CRISPR spacer
tacatcctcattagtttctttactatcccaaacagca	Protospacer
*************.*******.***************

40. spacer 7.2|1678285|37|CP016102|CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.946

tacatcctcattaatttctttgctatcccaaacagca	CRISPR spacer
tacatcctcattagtttctttactatcccaaacagca	Protospacer
*************.*******.***************

41. spacer 7.3|1678351|38|CP016102|CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 2, identity: 0.947

ctcttacgcttttcaatcactttttccttgctaaaatt	CRISPR spacer
cccttacgcttttcaatcattttttccttgctaaaatt	Protospacer
*.*****************.******************

42. spacer 7.3|1678351|38|CP016102|CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 2, identity: 0.947

ctcttacgcttttcaatcactttttccttgctaaaatt	CRISPR spacer
cccttacgcttttcaatcattttttccttgctaaaatt	Protospacer
*.*****************.******************

43. spacer 7.3|1678351|38|CP016102|CRISPRCasFinder,CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 2, identity: 0.947

ctcttacgcttttcaatcactttttccttgctaaaatt	CRISPR spacer
cccttacgcttttcaatcattttttccttgctaaaatt	Protospacer
*.*****************.******************

44. spacer 7.3|1678351|38|CP016102|CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 2, identity: 0.947

ctcttacgcttttcaatcactttttccttgctaaaatt	CRISPR spacer
cccttacgcttttcaatcattttttccttgctaaaatt	Protospacer
*.*****************.******************

45. spacer 7.6|1678549|37|CP016102|CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 2, identity: 0.946

atgttattacataaaaattcttcatctataactttaa	CRISPR spacer
atattattacataaaaattcttcgtctataactttaa	Protospacer
**.********************.*************

46. spacer 7.9|1678745|36|CP016102|CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 2, identity: 0.944

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatatcaatgtcaagaatacaaaattt	Protospacer
************.***********.***********

47. spacer 7.9|1678745|36|CP016102|CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 2, identity: 0.944

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatatcaatgtcaagaatacaaaattt	Protospacer
************.***********.***********

48. spacer 7.9|1678745|36|CP016102|CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 2, identity: 0.944

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatatcaatgtcaagaatacaaaattt	Protospacer
************.***********.***********

49. spacer 7.9|1678745|36|CP016102|CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 2, identity: 0.944

tatatattagatgtcaatgtcaaggatacaaaattt	CRISPR spacer
tatatattagatatcaatgtcaagaatacaaaattt	Protospacer
************.***********.***********

50. spacer 7.10|1678810|38|CP016102|CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.947

ccatcttttgttgctttacataaatttatattacttac	CRISPR spacer
ccatcttttgttgctttgcatagatttatattacttac	Protospacer
*****************.****.***************

51. spacer 8.1|1769688|37|CP016102|PILER-CR,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 2, identity: 0.946

ttatctgcgtcttctgaaatagcatactcttcaagag	CRISPR spacer
ttttctgcatcttctgaaatagcatactcttcaagag	Protospacer
** *****.****************************

52. spacer 8.4|1769687|38|CP016102|CRISPRCasFinder matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 2, identity: 0.947

tttatctgcgtcttctgaaatagcatactcttcaagag	CRISPR spacer
attatctgcatcttctgaaatagcatactcttcaagag	Protospacer
 ********.****************************

53. spacer 8.4|1769687|38|CP016102|CRISPRCasFinder matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 2, identity: 0.947

tttatctgcgtcttctgaaatagcatactcttcaagag	CRISPR spacer
attatctgcatcttctgaaatagcatactcttcaagag	Protospacer
 ********.****************************

54. spacer 8.4|1769687|38|CP016102|CRISPRCasFinder matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 2, identity: 0.947

tttatctgcgtcttctgaaatagcatactcttcaagag	CRISPR spacer
attatctgcatcttctgaaatagcatactcttcaagag	Protospacer
 ********.****************************

55. spacer 10.1|1904132|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 2, identity: 0.944

attgttttaccttctaaaaggtcacatatatttatt	CRISPR spacer
attatttcaccttctaaaaggtcacatatatttatt	Protospacer
***.***.****************************

56. spacer 10.1|1904132|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 2, identity: 0.944

attgttttaccttctaaaaggtcacatatatttatt	CRISPR spacer
attgtttcaccttctaaaatgtcacatatatttatt	Protospacer
*******.*********** ****************

57. spacer 10.1|1904132|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 2, identity: 0.944

attgttttaccttctaaaaggtcacatatatttatt	CRISPR spacer
attgtttcaccttctaaaatgtcacatatatttatt	Protospacer
*******.*********** ****************

58. spacer 10.1|1904132|36|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.944

attgttttaccttctaaaaggtcacatatatttatt	CRISPR spacer
attgtttcaccttctaaaatgtcacatatatttatt	Protospacer
*******.*********** ****************

59. spacer 10.6|1904456|38|CP016102|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 2, identity: 0.947

tttataacctttaattacacctcccatatcaccaccac	CRISPR spacer
cttgtaacctttaattacacctcccatatcaccaccac	Protospacer
.**.**********************************

60. spacer 12.13|2822357|36|CP016102|CRISPRCasFinder matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 2, identity: 0.944

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
tacattatataagatagctaaaaatctcttaggtaa	Protospacer
***************************.*****.**

61. spacer 7.2|1678285|37|CP016102|CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 3, identity: 0.919

tacatcctcattaatttctttgctatcccaaacagca	CRISPR spacer
tatatcctcattagtttctttgctatcccaaacagcg	Protospacer
**.**********.**********************.

62. spacer 8.2|1769754|36|CP016102|PILER-CR,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.917

gttgtaagaagtatcattctattttttaatctttct	CRISPR spacer
attggaggaagtatcattctattttttaatctttct	Protospacer
.*** *.*****************************

63. spacer 8.4|1769687|38|CP016102|CRISPRCasFinder matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 3, identity: 0.921

tttatctgcgtcttctgaaatagcatactcttcaagag	CRISPR spacer
attttctgcatcttctgaaatagcatactcttcaagag	Protospacer
 ** *****.****************************

64. spacer 12.6|2822357|42|CP016102|CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 3, identity: 0.929

tacattatataagatagctaaaaatcttttaggcaaatttac	CRISPR spacer
tacattatataagatagctaaaaatcttttaggcaaaggttc	Protospacer
*************************************  * *

65. spacer 4.1|798448|33|CP016102|CRISPRCasFinder matches to NZ_MG205641 (Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence) position: , mismatch: 4, identity: 0.879

aatgactcaaaagcagttactggatggcaaacc	CRISPR spacer
aataactcaaaagcagttacgggatggcaaatt	Protospacer
***.**************** **********..

66. spacer 4.1|798448|33|CP016102|CRISPRCasFinder matches to NZ_MG205642 (Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence) position: , mismatch: 4, identity: 0.879

aatgactcaaaagcagttactggatggcaaacc	CRISPR spacer
aataactcaaaagcagttacgggatggcaaatt	Protospacer
***.**************** **********..

67. spacer 6.1|1568811|25|CP016102|PILER-CR matches to MN856115 (Bacteriophage sp. isolate 460, complete genome) position: , mismatch: 4, identity: 0.84

tattacatctaattctgtctcttca	CRISPR spacer
cattacatctaattctttctcatct	Protospacer
.*************** **** **

68. spacer 8.5|1769753|37|CP016102|CRISPRCasFinder matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.892

tgttgtaagaagtatcattctattttttaatctttct	CRISPR spacer
aattggaggaagtatcattctattttttaatctttct	Protospacer
 .*** *.*****************************

69. spacer 6.1|1568811|25|CP016102|PILER-CR matches to NZ_CP051164 (Geobacillus subterraneus strain CPW16 plasmid pBsrF30, complete sequence) position: , mismatch: 5, identity: 0.8

tattacatctaattctgtctcttca	CRISPR spacer
aattgcatctaattctgtctctaat	Protospacer
 ***.*****************

70. spacer 6.1|1568811|25|CP016102|PILER-CR matches to MN693026 (Marine virus AFVG_117M72, complete genome) position: , mismatch: 5, identity: 0.8

tattacatctaattctgtctcttca	CRISPR spacer
cattacatctaattctttctctaat	Protospacer
.*************** *****

71. spacer 12.6|2822357|42|CP016102|CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 5, identity: 0.881

tacattatataagatagctaaaaatcttttaggcaaatttac	CRISPR spacer
tacattatataagatagctaaaaatcttttaggtaagggttc	Protospacer
*********************************.**.  * *

72. spacer 12.6|2822357|42|CP016102|CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 5, identity: 0.881

tacattatataagatagctaaaaatcttttaggcaaatttac	CRISPR spacer
tacattatataagatagctaaaaatcttttaggtaagggttc	Protospacer
*********************************.**.  * *

73. spacer 4.1|798448|33|CP016102|CRISPRCasFinder matches to NZ_MG205641 (Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence) position: , mismatch: 6, identity: 0.818

aatgactcaaaagcagttactggatggcaaacc	CRISPR spacer
tctagctcaaaagcagttacgggatggcaaact	Protospacer
  *..*************** ***********.

74. spacer 4.1|798448|33|CP016102|CRISPRCasFinder matches to NZ_MG205642 (Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence) position: , mismatch: 6, identity: 0.818

aatgactcaaaagcagttactggatggcaaacc	CRISPR spacer
tctagctcaaaagcagttacgggatggcaaact	Protospacer
  *..*************** ***********.

75. spacer 12.6|2822357|42|CP016102|CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 6, identity: 0.857

tacattatataagatagctaaaaatcttttaggcaaatttac	CRISPR spacer
tacattatataagatagctaaaaatctcttaggtaagggttc	Protospacer
***************************.*****.**.  * *

76. spacer 19.2|3713917|30|CP016102|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 6, identity: 0.8

tgctactccatttgctcccgttgctcctac	CRISPR spacer
cgttactcctgttgctcccgttgctcctgt	Protospacer
.*.******  *****************..

77. spacer 19.2|3713917|30|CP016102|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 6, identity: 0.8

tgctactccatttgctcccgttgctcctac	CRISPR spacer
cgttactcctgttgctcccgttgctcctgt	Protospacer
.*.******  *****************..

78. spacer 19.2|3713917|30|CP016102|CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 6, identity: 0.8

tgctactccatttgctcccgttgctcctac	CRISPR spacer
cgttactcctgttgctcccgttgctcctgt	Protospacer
.*.******  *****************..

79. spacer 19.2|3713917|30|CP016102|CRT matches to MG209611 (Aphanizomenon phage vB_AphaS-CL131, complete genome) position: , mismatch: 6, identity: 0.8

tgctactccatttgctcccgttgctcctac	CRISPR spacer
cgttgctcccgttgctcccgttgctcctat	Protospacer
.*.*.****  ******************.

80. spacer 1.1|32118|31|CP016102|CRISPRCasFinder matches to MT533174 (Escherichia phage CJ20, complete genome) position: , mismatch: 7, identity: 0.774

agaataaactgaacgcatgtgaagtttgttt	CRISPR spacer
caattaacccgaacgcatgtgaagtttatat	Protospacer
 .* *** *.*****************.* *

81. spacer 19.2|3713917|30|CP016102|CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 7, identity: 0.767

tgctactccatttgctcccgttgctcctac	CRISPR spacer
cgtcactcctgttgctcccgttgctcctgt	Protospacer
.*..*****  *****************..

82. spacer 19.2|3713917|30|CP016102|CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 7, identity: 0.767

tgctactccatttgctcccgttgctcctac	CRISPR spacer
cgtcactcctgttgctcccgttgctcctgt	Protospacer
.*..*****  *****************..

83. spacer 19.2|3713917|30|CP016102|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

tgctactccatttgctcccgttgctcctac	CRISPR spacer
aattgctccgattgctcccgttgctcctgc	Protospacer
 ..*.****. *****************.*

84. spacer 12.9|2822094|37|CP016102|CRISPRCasFinder matches to NZ_CP014325 (Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence) position: , mismatch: 8, identity: 0.784

cttaaagctac---ataataaaaaattaagaaaaagaaaa	CRISPR spacer
---aaacttatgagataataaaaacttaacaaaaagaaaa	Protospacer
   *** .**.   ********** **** **********

85. spacer 19.2|3713917|30|CP016102|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

tgctactccatttgctcccgttgctcctac	CRISPR spacer
ggtcgctcccgttgctcccgttgctccttt	Protospacer
 *...****  ***************** .

86. spacer 12.9|2822094|37|CP016102|CRISPRCasFinder matches to NZ_CP037437 (Lactobacillus plantarum strain EM plasmid pEM8, complete sequence) position: , mismatch: 9, identity: 0.757

cttaaagct------acataataaaaaattaagaaaaagaaaa	CRISPR spacer
------gcttgttagatataataaaaaatcaataaaaagaaaa	Protospacer
      ***      *.************.** **********

87. spacer 17.1|3215655|31|CP016102|CRISPRCasFinder matches to LR606148 (Rhizobium sp. Q54 genome assembly, plasmid: 5) position: , mismatch: 9, identity: 0.71

cactatctctggtattggcggatttatcata	CRISPR spacer
cgagcaacttggtattggcggatttatgata	Protospacer
*.     ..****************** ***

88. spacer 12.13|2822357|36|CP016102|CRISPRCasFinder matches to NZ_CP015807 (Borrelia mayonii strain MN14-1539 plasmid lp28-4) position: , mismatch: 10, identity: 0.722

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
ataaatatataaaatagctaaaaatcatttatcaat	Protospacer
   * *******.************* ****   *

89. spacer 12.13|2822357|36|CP016102|CRISPRCasFinder matches to NZ_CP015792 (Borrelia mayonii strain MN14-1420 plasmid lp28-4, complete sequence) position: , mismatch: 10, identity: 0.722

tacattatataagatagctaaaaatcttttaggcaa	CRISPR spacer
ataaatatataaaatagctaaaaatcatttatcaat	Protospacer
   * *******.************* ****   *

90. spacer 11.3|2732285|37|CP016102|PILER-CR matches to NC_025449 (Escherichia phage ECML-134, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cactccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

91. spacer 11.3|2732285|37|CP016102|PILER-CR matches to KM607002 (Enterobacteria phage RB55, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

92. spacer 11.3|2732285|37|CP016102|PILER-CR matches to KJ477684 (Enterobacteria phage T4 strain wild, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

93. spacer 11.3|2732285|37|CP016102|PILER-CR matches to HM137666 (Enterobacteria phage T4T, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

94. spacer 11.3|2732285|37|CP016102|PILER-CR matches to NC_000866 (Enterobacteria phage T4, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

95. spacer 11.3|2732285|37|CP016102|PILER-CR matches to L13089 (Bacteriophage T4 msp1-msp8 genes, complete cds's) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

96. spacer 11.3|2732285|37|CP016102|PILER-CR matches to KJ477686 (Enterobacteria phage T4 strain GT7, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

97. spacer 11.3|2732285|37|CP016102|PILER-CR matches to X57093 (Bacteriophage T4 orfs between tRNA and e genes) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

98. spacer 11.3|2732285|37|CP016102|PILER-CR matches to KJ477685 (Enterobacteria phage T4 strain 147, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

99. spacer 11.3|2732285|37|CP016102|PILER-CR matches to KM607003 (Enterobacteria phage RB59, complete genome) position: , mismatch: 11, identity: 0.703

ataataaaacttctattatatctactatatcaatatt	CRISPR spacer
cgctccaaacttctattatatctactgtaccactgat	Protospacer
    . ********************.**.** *. *

100. spacer 19.3|3713971|48|CP016102|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 15, identity: 0.688

atttgcccctgttgctcctgttgctcctgtagctcctgctactccatt---------	CRISPR spacer
---------tgttgctcctgttgctcctgttgctcctgttgctcctccagcaggtcc	Protospacer
         ********************* *******.*.**** ..

101. spacer 20.1|4062318|73|CP016102|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 23, identity: 0.685

-ggataaatcccgttgcttaaagtgctaacgcacagcgccaacaaacaaacttcacatgc	CRISPR spacer
tatatatatgcagtt-ttcaaagtgctaacgcacagcgccaacaaacaaacttcacatgt	Protospacer
 . *** ** * *** .*.****************************************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

204523 : 280428

Synechococcus_phage(16.67%)

protease,coat

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU44785.1\|204523_205240_+\|protease	glycoprotease	NA	NA	NA	NA
AXU44786.1\|205229_205706_+	ribosomal-protein-alanine acetyltransferase	NA	NA	NA	NA
AXU44787.1\|205711_206728_+	DNA-binding/iron metalloprotein/AP endonuclease	A0A0R6PI74	Moraxella_phage	4.0e-71	43.8
AXU44788.1\|207024_209733_+	4-hydroxyphenylacetate decarboxylase, catalytic subunit	NA	NA	NA	NA
AXU44789.1\|209736_209994_+	4-hydroxyphenylacetate decarboxylase, regulatory subunit	NA	NA	NA	NA
AXU44790.1\|209986_210937_+	4-hydroxyphenylacetate decarboxylase activating subunit	NA	NA	NA	NA
AXU44791.1\|211244_212183_+\|protease	membrane-associated CAAX amino terminal protease	NA	NA	NA	NA
AXU44792.1\|212304_213153_-\|protease	membrane-associated caaX amino terminal protease	NA	NA	NA	NA
AXU44793.1\|214412_214880_+	glyoxalase	NA	NA	NA	NA
AXU44794.1\|214962_216312_-	amino acid transporter	NA	NA	NA	NA
AXU44795.1\|216348_217569_-	amidohydrolase/peptidase	NA	NA	NA	NA
AXU44796.1\|217937_219950_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA
AXU44797.1\|220420_221071_+	cyclic nucleotide-binding protein	NA	NA	NA	NA
AXU44798.1\|221210_222587_-	drug/sodium antiporter	NA	NA	NA	NA
AXU44799.1\|222602_224516_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.6e-63	32.4
AXU44800.1\|224651_225284_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
AXU44801.1\|225431_225962_+	formylmethanofuran dehydrogenase subunit E	NA	NA	NA	NA
AXU44802.1\|226138_226309_-	ferredoxin	NA	NA	NA	NA
AXU44803.1\|226593_227661_+	lipoprotein	NA	NA	NA	NA
AXU44804.1\|227830_229732_+	oxidoreductase, acetyl-CoA synthase subunit	NA	NA	NA	NA
AXU44805.1\|229712_230198_+	oxidoreductase, electron transfer subunit	NA	NA	NA	NA
AXU44806.1\|230172_231399_+	oxidoreductase, NAD/FAD binding subunit	NA	NA	NA	NA
AXU44807.1\|231537_232725_-	cyclopropane-fatty-acyl-phospholipid synthase	A0A2I2L5L3	Orpheovirus	9.4e-48	33.8
AXU44808.1\|232997_233822_+	ATP-binding protein	NA	NA	NA	NA
AXU44809.1\|233950_235216_+	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA
AXU44810.1\|235408_236110_+\|protease	membrane-associated metalloprotease	NA	NA	NA	NA
AXU44811.1\|236394_237528_+\|protease	membrane-associated metalloprotease	NA	NA	NA	NA
AXU44812.1\|238444_239443_+	cell wall hydrolase	A0A0A8WF62	Clostridium_phage	3.2e-33	55.8
AXU44813.1\|239739_240660_+	aspartate carbamoyltransferase catalytic chain	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.4e-59	42.9
AXU44814.1\|240698_241391_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA
AXU44815.1\|241383_242286_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA
AXU44816.1\|242370_242955_+	orotate phosphoribosyltransferase	Q58MW1	Prochlorococcus_phage	2.2e-05	28.1
AXU44817.1\|243170_244097_+	ketopantoate reductase	NA	NA	NA	NA
AXU44818.1\|244148_245039_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXU44819.1\|245226_246258_+	membrane protein	NA	NA	NA	NA
AXU44820.1\|246551_247427_+	DNA glycosylase	NA	NA	NA	NA
AXU44821.1\|247444_248935_+	cardiolipin synthetase	NA	NA	NA	NA
AXU44822.1\|249127_249412_+	10 kDa chaperonin	A0A221S4A8	uncultured_virus	1.4e-13	42.6
AXU44823.1\|249444_251073_+	60 kDa chaperonin	A0A240F779	uncultured_virus	5.8e-157	55.7
AXU44824.1\|251334_252075_+	NCAIR mutase-like protein	A0A288TYA6	Enterococcus_phage	5.2e-20	44.8
AXU44825.1\|252158_252893_+	hypothetical protein	NA	NA	NA	NA
AXU44826.1\|252922_253342_+	hypothetical protein	NA	NA	NA	NA
AXU44827.1\|253723_255259_+	GMP synthase	A0A1V0SH76	Hokovirus	1.2e-23	33.7
AXU44828.1\|255774_257205_+	membrane-associated nucleotidase	NA	NA	NA	NA
AXU44829.1\|257352_258228_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXU44830.1\|258347_258911_+	chromate transport protein ChrA	NA	NA	NA	NA
AXU44831.1\|258907_259474_+	chromate transporter	NA	NA	NA	NA
AXU44832.1\|260148_263577_-	DNA repair protein	A0A1B1IVR3	uncultured_Mediterranean_phage	2.4e-176	37.4
AXU44833.1\|263895_266130_+	signaling protein	NA	NA	NA	NA
AXU44834.1\|266387_268418_+	transcription antiterminator	NA	NA	NA	NA
AXU44835.1\|268414_268867_+	PTS system transporter subunit IIA	NA	NA	NA	NA
AXU44836.1\|268868_269924_+	fructose-like permease EIIC subunit 2	NA	NA	NA	NA
AXU44837.1\|269990_270299_+	PTS system fructose-like transporter subunit EIIB	NA	NA	NA	NA
AXU44838.1\|270402_271668_+	sugar-phosphate kinase	NA	NA	NA	NA
AXU44839.1\|271755_272472_+	hydrolase	NA	NA	NA	NA
AXU44840.1\|272666_272960_-\|coat	spore coat protein	NA	NA	NA	NA
AXU44841.1\|272965_273181_-	hypothetical protein	NA	NA	NA	NA
AXU44842.1\|273724_274237_-	nitroreductase	A0A1V0E011	Clostridioides_phage	7.8e-84	87.6
AXU44843.1\|274686_275163_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	6.9e-26	45.8
AXU44844.1\|275168_275867_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	1.5e-45	43.9
AXU44845.1\|275878_277246_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-49	31.0
AXU44846.1\|277239_278316_+	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	1.7e-64	42.2
AXU44847.1\|278309_278903_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.6e-25	40.4
AXU44848.1\|278895_280428_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	2.3e-38	49.7

DBSCAN-SWA_2

656797 : 700560

Streptococcus_phage(33.33%)

transposase,coat,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU45179.1\|656797_658717_+\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	1.3e-144	39.9
AXU45180.1\|659482_660598_+\|transposase	PD-(D/E)XK nuclease family transposase	NA	NA	NA	NA
AXU45181.1\|660819_661857_-	hypothetical protein	NA	NA	NA	NA
AXU45182.1\|661849_662536_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
AXU45183.1\|662547_662868_-	transcriptional regulator	NA	NA	NA	NA
AXU45184.1\|663228_664569_+	two-component sensor histidine kinase	X5JAC0	Clostridium_phage	1.5e-73	37.4
AXU45185.1\|665019_665589_-	putative HD superfamily hydrolase	NA	NA	NA	NA
AXU45186.1\|665749_667000_-	efflux protein	NA	NA	NA	NA
AXU45187.1\|667008_667242_-	hypothetical protein	NA	NA	NA	NA
AXU45188.1\|667292_667871_-	TetR family transcriptional regulator	NA	NA	NA	NA
AXU45189.1\|668171_669632_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AXU45190.1\|670016_670622_+	TetR family transcriptional regulator	NA	NA	NA	NA
AXU45191.1\|670624_673192_+	PEP-utilizing kinase	A0A1V0SGR7	Hokovirus	2.7e-47	39.2
AXU45192.1\|673451_675536_-	signaling protein	NA	NA	NA	NA
AXU45193.1\|675583_676813_-	signaling protein	NA	NA	NA	NA
AXU45194.1\|676814_677993_-	signaling protein	G3MA91	Bacillus_virus	8.6e-09	26.9
AXU45195.1\|678892_680332_+	GntR family transcriptional regulator	NA	NA	NA	NA
AXU45196.1\|680644_680824_+	hypothetical protein	NA	NA	NA	NA
AXU45197.1\|681442_681718_+	hypothetical protein	NA	NA	NA	NA
AXU45198.1\|681737_682025_+	hypothetical protein	NA	NA	NA	NA
AXU45199.1\|682541_685037_+	hypothetical protein	NA	NA	NA	NA
AXU45200.1\|685051_690232_+	hypothetical protein	NA	NA	NA	NA
AXU45201.1\|690436_691303_-	cation transporting ATPase	E4ZFI9	Streptococcus_phage	1.4e-29	29.5
AXU45202.1\|691495_692251_-\|transposase	transposase-like protein b	A0A0H3UZC2	Geobacillus_virus	5.6e-78	57.4
AXU45203.1\|692229_692604_-\|transposase	transposase-like protein B	S6AND0	Bacillus_phage	5.3e-21	51.5
AXU45204.1\|693350_694511_-	cation transporting ATPase	NA	NA	NA	NA
AXU45205.1\|694553_694949_-	hypothetical protein	NA	NA	NA	NA
AXU45206.1\|695889_696078_+	hypothetical protein	NA	NA	NA	NA
AXU45207.1\|696259_696700_-	hypothetical protein	NA	NA	NA	NA
AXU45208.1\|697054_698368_+	putative phosphoadenosine phosphosulfate sulfotransferase	A0A220GKF8	Streptococcus_phage	5.7e-94	41.0
AXU45209.1\|698385_698922_+	ParB-like nuclease domain protein	A0A220GKT8	Streptococcus_phage	1.2e-63	69.7
AXU45210.1\|699441_699663_+\|coat	Spore coat associated protein JA (CotJA)	NA	NA	NA	NA
AXU45211.1\|699662_699926_+\|coat	spore-coat protein	NA	NA	NA	NA
AXU45212.1\|699987_700560_+\|coat	spore-coat protein	NA	NA	NA	NA

DBSCAN-SWA_3

1493317 : 1517710

Clostridium_phage(54.55%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU45898.1\|1493317_1493518_+	cold shock protein	A0A1W6JNX5	Morganella_phage	2.7e-16	66.2
AXU45899.1\|1493938_1494367_+	regulatory protein	NA	NA	NA	NA
AXU45900.1\|1494509_1495265_-	peptidyl-prolyl isomerase	NA	NA	NA	NA
AXU45901.1\|1495385_1495802_-	hypothetical protein	NA	NA	NA	NA
AXU45902.1\|1495965_1496472_-	phage protein	A0A0A8WEK1	Clostridium_phage	4.0e-56	67.1
AXU45903.1\|1496553_1496874_-	phage repressor	A0A0A8WE28	Clostridium_phage	3.7e-23	54.5
AXU45904.1\|1497042_1497240_+	phage regulatory protein	NA	NA	NA	NA
AXU45905.1\|1497344_1497785_+	DNA-binding protein	A0A090EUN5	Clostridium_phage	6.0e-32	51.4
AXU45906.1\|1498033_1498477_+	hypothetical protein	A0A1V0DZX9	Clostridioides_phage	2.0e-19	36.7
AXU45907.1\|1498481_1499546_+	phage-like element pbsx protein XkdK	A0A1V0DZX4	Clostridioides_phage	1.2e-97	53.1
AXU45908.1\|1499559_1499988_+	phage-like element pbsx protein XkdM	A0A1V0DZX1	Clostridioides_phage	2.8e-34	51.8
AXU45909.1\|1500101_1500548_+	Phage XkdN-like protein	A0A0A7RTP2	Clostridium_phage	1.8e-12	36.4
AXU45910.1\|1500574_1500742_+	hypothetical protein	NA	NA	NA	NA
AXU45911.1\|1500741_1503141_+	phage protein	A0A1V0DZX3	Clostridioides_phage	6.4e-19	45.6
AXU45912.1\|1503140_1503563_+	phage-like element pbsx protein xkdP	A0A090DBR9	Clostridium_phage	1.7e-52	71.1
AXU45913.1\|1503844_1505377_+	phage cell wall hydrolase	A0A1V0DZX6	Clostridioides_phage	1.8e-237	79.7
AXU45914.1\|1505392_1505719_+	hypothetical protein	J9QE86	Clostridium_phage	2.3e-52	94.4
AXU45915.1\|1505718_1506147_+	phage protein	A0A0A8WJ32	Clostridium_phage	5.8e-64	82.4
AXU45916.1\|1506139_1507192_+	phage protein	A0A0A8WFP3	Clostridium_phage	5.7e-137	69.8
AXU45917.1\|1507188_1507887_+	phage protein	A0A090D815	Clostridium_phage	5.5e-48	56.9
AXU45918.1\|1507887_1508874_+\|tail	phage tail fiber protein	A0A2H4J039	uncultured_Caudovirales_phage	7.6e-59	46.8
AXU45919.1\|1508895_1514127_+	RCC1 domain-containing protein, alpha-tubulin suppressor	A0A0A8WEY5	Clostridium_phage	3.4e-81	31.3
AXU45920.1\|1514143_1514497_+	hypothetical protein	A0A0A8WJF2	Clostridium_phage	5.5e-12	42.1
AXU45921.1\|1514759_1515020_+	hypothetical protein	E2ELK7	Clostridium_phage	9.9e-35	90.6
AXU45922.1\|1515243_1515699_-	hypothetical protein	NA	NA	NA	NA
AXU45923.1\|1515926_1516346_-	phage regulatory protein	S5MUV6	Brevibacillus_phage	5.4e-06	37.2
AXU45924.1\|1516644_1516854_+	phage regulatory protein	Q5YAA3	Bacillus_phage	5.9e-06	47.2
AXU45925.1\|1516885_1517095_+	hypothetical protein	NA	NA	NA	NA
AXU45926.1\|1517311_1517710_-	phage regulatory protein	A0A1L2JY18	Aeribacillus_phage	2.7e-07	29.7

DBSCAN-SWA_4

1599121 : 1608850

Pandoravirus(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU45996.1\|1599121_1599706_+	para-aminobenzoate synthase glutamine amidotransferase component II	A0A0P0IKJ1	Acinetobacter_phage	1.7e-58	53.7
AXU45997.1\|1599707_1601057_+	para-aminobenzoate synthase component I	S4VNU7	Pandoravirus	2.9e-37	41.2
AXU45998.1\|1601046_1601790_+	aminodeoxychorismate lyase	NA	NA	NA	NA
AXU45999.1\|1601823_1602525_+	hypothetical protein	NA	NA	NA	NA
AXU46000.1\|1602550_1603123_+	GTP cyclohydrolase I	E7DN69	Pneumococcus_phage	3.0e-44	51.6
AXU46001.1\|1603188_1603980_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	9.8e-25	30.0
AXU46002.1\|1603990_1604356_+	dihydroneopterin aldolase	NA	NA	NA	NA
AXU46003.1\|1604348_1604855_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	S4VNV0	Pandoravirus	2.5e-13	36.6
AXU46004.1\|1604835_1605621_+	chorismate biosynthesis-like protein	E3T537	Cafeteria_roenbergensis_virus	1.0e-13	28.3
AXU46005.1\|1605875_1607666_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.2e-51	32.6
AXU46006.1\|1607683_1608850_+	RNA polymerase sigma factor (sigma-43)	M4SMP8	Cyanophage	9.6e-37	36.8

DBSCAN-SWA_5

1734491 : 1790446

Clostridium_phage(81.03%)

portal,holin,terminase,head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU46117.1\|1734491_1736186_+	acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	6.5e-50	29.2
AXU46118.1\|1736543_1737674_-	prophage lambdaba04, site-specific recombinase	A0A0A8WIE1	Clostridium_phage	5.0e-216	99.5
AXU46119.1\|1737913_1738420_-	putative Zn peptidase	A0A0A8WEK1	Clostridium_phage	1.5e-87	100.0
AXU46120.1\|1738682_1740272_-	hypothetical protein	A0A1S5SA14	Streptococcus_phage	4.0e-33	27.9
AXU46121.1\|1740295_1740841_-	phage repressor	A0A0A8WJ60	Clostridium_phage	2.6e-45	53.3
AXU46122.1\|1741021_1741237_+	phage repressor	A0A0A8WIG0	Clostridium_phage	3.8e-24	77.5
AXU46123.1\|1741267_1742041_+	phage regulatory protein	A0A0A8WIJ5	Clostridium_phage	4.6e-35	39.6
AXU46124.1\|1742160_1742991_+	anti-repressor	A0A0A8WIE3	Clostridium_phage	4.4e-84	62.8
AXU46125.1\|1743037_1743247_+	hypothetical protein	NA	NA	NA	NA
AXU46126.1\|1743256_1743631_-	hypothetical protein	A0A1L5C299	Pseudoalteromonas_phage	2.2e-11	37.1
AXU46127.1\|1743706_1743904_+	phage regulatory protein	A0A0A8WE47	Clostridium_phage	4.9e-26	92.3
AXU46128.1\|1743934_1744327_+	Helix-turn-helix domain protein	A0A0A8WHS2	Clostridium_phage	6.7e-59	94.6
AXU46129.1\|1744307_1744457_+	hypothetical protein	A0A0A8WIF8	Clostridium_phage	5.5e-14	87.2
AXU46130.1\|1744527_1744965_+	hypothetical protein	NA	NA	NA	NA
AXU46131.1\|1744976_1746143_+	phage-like protein	S5MUB5	Brevibacillus_phage	1.1e-117	55.9
AXU46132.1\|1746157_1746493_+	hypothetical protein	NA	NA	NA	NA
AXU46133.1\|1746545_1747118_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AXU46134.1\|1747140_1747713_+	phage-like protein	S5MC21	Brevibacillus_phage	8.5e-63	66.7
AXU46135.1\|1747712_1749671_+	dna-directed dna polymerase i	A0A0A7RTL3	Clostridium_phage	5.4e-266	69.4
AXU46136.1\|1749682_1752100_+	virulence-associated protein e	A0A0A7RTG3	Clostridium_phage	0.0e+00	67.7
AXU46137.1\|1752065_1752209_+	hypothetical protein	NA	NA	NA	NA
AXU46138.1\|1752381_1752708_+	phage-like protein	A0A2K5B272	Erysipelothrix_phage	8.7e-20	55.4
AXU46139.1\|1752656_1754027_+	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	A0A1S7FYY5	Listeria_phage	8.4e-157	60.3
AXU46140.1\|1754180_1754660_+	sigma-70 region 4 type 2	I2E8Y5	Clostridium_phage	3.3e-36	51.6
AXU46141.1\|1755144_1755381_+	anti-repressor	A0A0A8WJQ8	Clostridium_phage	3.3e-37	96.2
AXU46142.1\|1755683_1756658_+	hypothetical protein	NA	NA	NA	NA
AXU46143.1\|1756678_1757188_+	hypothetical protein	NA	NA	NA	NA
AXU46144.1\|1757258_1757951_+	phage DNA-binding protein	A0A0A8WFS6	Clostridium_phage	1.7e-121	98.3
AXU46145.1\|1757928_1759182_+\|terminase	phage terminase large subunit	X5JAB3	Clostridium_phage	3.0e-246	99.0
AXU46146.1\|1759187_1760627_+\|portal	phage portal protein	A0A0A8WFC0	Clostridium_phage	5.3e-279	99.8
AXU46147.1\|1760616_1762110_+\|head	phage minor head protein	X5JAI9	Clostridium_phage	1.1e-284	96.8
AXU46148.1\|1762075_1762318_+	hypothetical protein	X5JAV8	Clostridium_phage	3.4e-37	100.0
AXU46149.1\|1762627_1763191_+	phage scaffold protein	X5JAB4	Clostridium_phage	3.0e-84	89.3
AXU46150.1\|1763202_1764102_+\|capsid	phage major capsid protein	A0A0A8WFI8	Clostridium_phage	2.8e-169	100.0
AXU46151.1\|1764101_1764335_+	hypothetical protein	A0A0A8WFD0	Clostridium_phage	3.2e-32	96.1
AXU46152.1\|1764344_1764746_+	hypothetical protein	X5JAJ0	Clostridium_phage	8.1e-68	97.0
AXU46153.1\|1764739_1765087_+	phage protein	X5JAV9	Clostridium_phage	1.1e-57	99.1
AXU46154.1\|1765086_1765512_+	phage protein	A0A0A8WFV8	Clostridium_phage	3.2e-75	97.9
AXU46155.1\|1765504_1765942_+	phage protein	X5JAB5	Clostridium_phage	2.8e-74	92.4
AXU46156.1\|1765925_1766111_+	hypothetical protein	X5J9Z6	Clostridium_phage	1.3e-20	89.7
AXU46157.1\|1766111_1767422_+	phage protein	X5JAJ1	Clostridium_phage	7.3e-235	94.0
AXU46158.1\|1767438_1767909_+	phage protein	A0A0A8WJ62	Clostridium_phage	7.0e-71	82.1
AXU46159.1\|1767980_1768421_+	phage protein	X5JAB6	Clostridium_phage	8.6e-47	63.7
AXU46160.1\|1769263_1769368_+	hypothetical protein	A0A090D809	Clostridium_phage	9.4e-05	73.5
AXU46161.1\|1770070_1770823_+	hypothetical protein	A0A090DCP8	Clostridium_phage	6.2e-61	51.6
AXU46162.1\|1771126_1771300_+	hypothetical protein	NA	NA	NA	NA
AXU46163.1\|1771423_1772251_+	prophage antirepressor-related protein	X5JAW1	Clostridium_phage	5.2e-85	66.3
AXU46164.1\|1772299_1772476_+	hypothetical protein	NA	NA	NA	NA
AXU46165.1\|1772906_1773467_+	phage protein	A0A0A8WFW4	Clostridium_phage	2.7e-93	94.6
AXU46166.1\|1773542_1775909_+\|tail	phage tail tape measure protein	A0A0A8WJT6	Clostridium_phage	1.3e-282	71.3
AXU46167.1\|1775924_1776626_+	phage cell wall hydrolase	A0A0A8WFE5	Clostridium_phage	8.4e-121	93.5
AXU46168.1\|1776618_1778583_+	phage cell wall hydrolase	A0A0A8WIF2	Clostridium_phage	6.1e-310	86.1
AXU46169.1\|1778596_1778857_+	phage protein	A0A0A8WJ65	Clostridium_phage	2.5e-38	96.5
AXU46170.1\|1778861_1779281_+	phage protein	A0A0A8WJV8	Clostridium_phage	3.9e-73	98.6
AXU46171.1\|1779281_1780328_+	phage protein	X5JAB8	Clostridium_phage	2.6e-182	94.2
AXU46172.1\|1780320_1780938_+	phage protein	A0A0A8WII4	Clostridium_phage	8.8e-114	98.0
AXU46173.1\|1780949_1781942_+\|tail	phage tail fiber protein	A3QSB7	Clostridium_virus	1.5e-160	94.1
AXU46174.1\|1781958_1783671_+	Glycine rich protein	B6SBV0	Clostridium_virus	4.8e-218	84.7
AXU46175.1\|1783691_1784039_+	hypothetical protein	A3QSB8	Clostridium_virus	5.5e-57	100.0
AXU46176.1\|1784050_1784221_+	hypothetical protein	A0A0A8WHY8	Clostridium_phage	8.2e-14	69.1
AXU46177.1\|1784251_1784818_+	hypothetical protein	A0A0A8WFF2	Clostridium_phage	1.2e-37	78.7
AXU46178.1\|1784848_1785139_+	hypothetical protein	A0A0A8WIF5	Clostridium_phage	6.3e-46	100.0
AXU46179.1\|1785142_1785400_+\|holin	holin	A0A0A8WF70	Clostridium_phage	6.6e-39	95.3
AXU46180.1\|1786025_1786523_+	AbiF-like protein	A3QSC6	Clostridium_virus	4.9e-91	99.4
AXU46181.1\|1786601_1787414_+	N-acetylmuramoyl-l-alanine amidase	A0A0K2SUC5	Clostridium_phage	1.3e-149	94.4
AXU46182.1\|1787570_1789862_+	penicillin-binding protein	NA	NA	NA	NA
AXU46183.1\|1789903_1790080_-	putative PemI	A0A0A8WHQ4	Clostridium_phage	4.2e-13	63.8
AXU46184.1\|1790317_1790446_-	hypothetical protein	A0A0A8WEJ5	Clostridium_phage	5.8e-12	95.2

DBSCAN-SWA_6

2121249 : 2128492

Clostridium_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU46492.1\|2121249_2122038_-	phage-related cell wall hydrolase	A0A0A8WE15	Clostridium_phage	1.1e-89	62.3
AXU46493.1\|2122176_2122614_-	phage-related deoxycytidylate deaminase	A7KUY9	Bacillus_phage	5.9e-32	54.3
AXU46494.1\|2122848_2122983_-	hypothetical protein	B6SBZ7	Clostridium_virus	6.2e-09	78.0
AXU46495.1\|2123451_2123751_+\|transposase	transposase	A0A0A8WJI7	Clostridium_phage	2.7e-20	94.2
AXU46496.1\|2124027_2124537_+	phage repressor	A0A2H4J6F9	uncultured_Caudovirales_phage	1.0e-06	43.8
AXU46497.1\|2124925_2125462_+	lipoprotein signal peptidase	NA	NA	NA	NA
AXU46498.1\|2125898_2126699_-	ABC transporter permease	NA	NA	NA	NA
AXU46499.1\|2126893_2128492_-	site-specific recombinase	A0A1L2BY67	Clostridium_phage	2.3e-113	44.2

DBSCAN-SWA_7

2564216 : 2575973

Clostridium_phage(83.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU46883.1\|2564216_2564963_-	phage-related cell wall hydrolase	A0A0A8WHU0	Clostridium_phage	3.9e-84	67.5
AXU46884.1\|2564962_2565220_-	phage membrane protein	A0A0A8WF70	Clostridium_phage	7.5e-35	83.5
AXU46885.1\|2565239_2565470_-	Hemolysin XhlA	A0A0A8WEZ7	Clostridium_phage	4.8e-33	97.4
AXU46886.1\|2565527_2567075_-	Glycine rich protein	B6SBV0	Clostridium_virus	7.2e-181	75.7
AXU46887.1\|2567209_2567392_-	hypothetical protein	J9QDY8	Clostridium_phage	1.2e-23	90.0
AXU46888.1\|2567471_2567684_-	hypothetical protein	J9QEB9	Clostridium_phage	4.9e-24	78.6
AXU46889.1\|2567697_2569191_-	hypothetical protein	J9QE87	Clostridium_phage	6.0e-108	55.2
AXU46890.1\|2569206_2569554_-\|tail	phage tail fiber protein	J9QED3	Clostridium_phage	1.9e-20	68.5
AXU46891.1\|2569541_2570966_-	phage protein	A0A0A8WFK0	Clostridium_phage	1.0e-157	83.9
AXU46892.1\|2571200_2571635_+	hypothetical protein	NA	NA	NA	NA
AXU46893.1\|2571722_2573282_-	cell surface protein	A0A2R2ZGK6	Clostridioides_phage	1.9e-72	52.0
AXU46894.1\|2575264_2575441_-	regulatory protein	A0A0A8WFF9	Clostridium_phage	3.3e-10	77.5
AXU46895.1\|2575595_2575973_-	regulatory protein	A0A0A8WJU1	Clostridium_phage	3.6e-54	91.2

DBSCAN-SWA_8

2816693 : 2825414

Clostridium_phage(66.67%)

holin,integrase

attL 2817318:2817334|attR 2832390:2832406

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU47113.1\|2816693_2817077_-	regulatory protein	A0A090DCS9	Clostridium_phage	4.1e-61	89.8
2817318:2817334	attL	NA	NA	NA	NA
AXU47114.1\|2817456_2817633_+	hypothetical protein	NA	NA	NA	NA
AXU47115.1\|2817858_2818059_+	cold shock protein	A0A1X9IGI9	Lactococcus_phage	5.0e-18	68.3
AXU47116.1\|2818504_2819827_+	two-component sensor histidine kinase	X5JAC0	Clostridium_phage	4.6e-136	59.4
AXU47117.1\|2819869_2820451_+	accessory genes regulator	X5JB40	Clostridium_phage	1.0e-42	49.2
AXU47118.1\|2820468_2820630_+	autoinducer prepeptide	NA	NA	NA	NA
AXU47119.1\|2820651_2821449_-	phage-related cell wall hydrolase	A0A0A8WE15	Clostridium_phage	1.1e-140	90.7
AXU47120.1\|2821445_2821706_-\|holin	holin	A3QSC5	Clostridium_virus	7.9e-32	77.6
AXU47121.1\|2822706_2822865_-	hypothetical protein	J9QED5	Clostridium_phage	1.6e-08	63.5
AXU47122.1\|2823222_2824593_-	cell surface protein	A0A2R2ZGK6	Clostridioides_phage	1.6e-70	43.9
AXU47123.1\|2824991_2825414_+\|integrase	integrase	X5JB41	Clostridium_phage	4.4e-48	69.8
2832390:2832406	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3129913 : 3138866

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU47376.1\|3129913_3131827_-	capsular polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.1e-26	29.8
AXU47377.1\|3131910_3133002_-	capsular polysaccharide biosynthesis glycosyl transferase	A0A1V0SL50	Klosneuvirus	2.3e-16	26.2
AXU47378.1\|3133007_3134303_-	UDP-glucose 6-dehydrogenase	A0A127AXI2	Bacillus_phage	4.9e-90	43.4
AXU47379.1\|3134328_3135081_-	teichuronic acid biosynthesis glycosyl transferase	A0A1V0SAH6	Catovirus	4.6e-16	40.5
AXU47380.1\|3135128_3136037_-	beta-glycosyltransferase	NA	NA	NA	NA
AXU47381.1\|3136058_3136808_-	teichuronic acid biosynthesis glycosyl transferase	A0A1V0SAH6	Catovirus	1.2e-16	38.8
AXU47382.1\|3136836_3138012_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA
AXU47383.1\|3138026_3138866_-	glycosyl transferase	A0A2P1ELT8	Moumouvirus	7.0e-05	26.3

DBSCAN-SWA_10

3314088 : 3361985

Bacillus_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU47518.1\|3314088_3314889_-\|transposase	transposase	A0A1B1P773	Bacillus_phage	1.3e-40	38.5
AXU47519.1\|3314942_3315260_-\|transposase	transposase	NA	NA	NA	NA
AXU47520.1\|3315403_3315994_-	dipicolinate synthase subunit B	NA	NA	NA	NA
AXU47521.1\|3315996_3316872_-	dipicolinate synthase subunit A	NA	NA	NA	NA
AXU47522.1\|3316947_3318339_-	AMP-binding protein	NA	NA	NA	NA
AXU47523.1\|3318342_3319479_-	thiolase	NA	NA	NA	NA
AXU47524.1\|3319510_3319909_-	biotin synthase	NA	NA	NA	NA
AXU47525.1\|3320030_3321140_-\|transposase	transposase-like protein B	A0A0H3UZC2	Geobacillus_virus	8.1e-110	53.0
AXU47526.1\|3321787_3321940_-	biotin synthase	NA	NA	NA	NA
AXU47527.1\|3322263_3323043_+	hypothetical protein	NA	NA	NA	NA
AXU47528.1\|3323507_3323936_-	acetyltransferase	NA	NA	NA	NA
AXU47529.1\|3324131_3324335_-	putative transcriptional regulator	NA	NA	NA	NA
AXU47530.1\|3324643_3326560_-	ABC transporter permease	NA	NA	NA	NA
AXU47531.1\|3326559_3327306_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.9e-14	35.7
AXU47532.1\|3327407_3328259_-	undecaprenyl pyrophosphate phosphatase	NA	NA	NA	NA
AXU47533.1\|3328513_3329518_-	two-component system histidine kinase	NA	NA	NA	NA
AXU47534.1\|3329527_3330220_-	two-component system esponse regulator	NA	NA	NA	NA
AXU47535.1\|3330533_3331493_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXU47536.1\|3331525_3332404_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.0e-19	29.6
AXU47537.1\|3332396_3333179_-	ABC transporter permease	NA	NA	NA	NA
AXU47538.1\|3333179_3333809_-	hypothetical protein	NA	NA	NA	NA
AXU47539.1\|3334203_3334830_-	hypothetical protein	NA	NA	NA	NA
AXU47540.1\|3334905_3335877_-	ribonucleoside-diphosphate reductase subunit beta	A0A218KC18	Bacillus_phage	1.1e-105	59.4
AXU47541.1\|3335889_3337989_-	ribonucleoside-diphosphate reductase subunit alpha	A0A0K2FMK0	Brevibacillus_phage	4.5e-218	54.2
AXU47542.1\|3338466_3339192_+	pentapeptide repeat family protein	NA	NA	NA	NA
AXU47543.1\|3339319_3340516_-	iron ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.3e-17	28.8
AXU47544.1\|3340518_3341544_-	iron ABC transporter permease	NA	NA	NA	NA
AXU47545.1\|3341615_3342746_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA
AXU47546.1\|3343206_3344100_-	dihydrodipicolinate synthase	NA	NA	NA	NA
AXU47547.1\|3344179_3345082_-	isomerase/hydrolase	NA	NA	NA	NA
AXU47548.1\|3345131_3346292_-	carbohydrate hydrolase	NA	NA	NA	NA
AXU47549.1\|3346446_3346752_-	hypothetical protein	NA	NA	NA	NA
AXU47550.1\|3346849_3347824_-	2-keto-3-deoxygluconate permease	NA	NA	NA	NA
AXU47551.1\|3348411_3349188_+	IclR family transcriptional regulator	NA	NA	NA	NA
AXU47552.1\|3349520_3350666_+	alcohol dehydrogenase	NA	NA	NA	NA
AXU47553.1\|3350820_3351672_-	SH3 type 3 domain-containing protein	NA	NA	NA	NA
AXU47554.1\|3351805_3352228_-	hypothetical protein	NA	NA	NA	NA
AXU47555.1\|3352910_3353228_+\|transposase	transposase	NA	NA	NA	NA
AXU47556.1\|3353281_3354082_+\|transposase	transposase	A0A1B1P773	Bacillus_phage	1.3e-40	38.5
AXU47557.1\|3354194_3355583_-	pyridine-nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	2.4e-95	42.2
AXU47558.1\|3355703_3356981_-	cytochrome C biogenesis protein	NA	NA	NA	NA
AXU47559.1\|3357117_3357453_-	transcriptional regulator	NA	NA	NA	NA
AXU47560.1\|3359774_3359864_-	hypothetical protein	NA	NA	NA	NA
AXU47561.1\|3360200_3360644_+	glyoxalase/bleomycin resistance protein/dioxygenase	NA	NA	NA	NA
AXU47562.1\|3361109_3361985_-\|transposase	transposase mutator type	A0A0K2CZ57	Paenibacillus_phage	9.5e-29	30.5

DBSCAN-SWA_11

3580245 : 3616767

Clostridium_phage(79.49%)

protease,portal,integrase,terminase,head,tail,capsid

attL 3605121:3605138|attR 3625959:3625976

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU47742.1\|3580245_3582273_-	N-6 DNA methylase	A0A220A2U5	Liberibacter_phage	2.6e-21	24.0
AXU47743.1\|3582734_3583214_+	hypothetical protein	NA	NA	NA	NA
AXU47744.1\|3583242_3584055_-	N-acetylmuramoyl-l-alanine amidase	X5JAJ5	Clostridium_phage	4.2e-148	93.3
AXU47745.1\|3584054_3584312_-	phage membrane protein	A0A0K2SUI8	Clostridium_phage	2.0e-40	91.8
AXU47746.1\|3584331_3584562_-	Hemolysin XhlA	A0A0A8WJR7	Clostridium_phage	2.8e-33	97.4
AXU47747.1\|3584632_3585166_-	hypothetical protein	A0A0A8WFF2	Clostridium_phage	1.7e-28	83.8
AXU47748.1\|3585199_3585382_-	hypothetical protein	J9QE73	Clostridium_phage	7.2e-24	95.0
AXU47749.1\|3585381_3585675_-	hypothetical protein	J9QE35	Clostridium_phage	2.7e-44	91.8
AXU47750.1\|3585688_3587386_-	Glycine rich protein	A0A090EUF1	Clostridium_phage	1.7e-135	59.9
AXU47751.1\|3587402_3588404_-\|tail	phage tail fiber protein	A0A1V0DZY8	Clostridioides_phage	6.4e-114	80.5
AXU47752.1\|3588405_3589023_-	phage protein	J9QD29	Clostridium_phage	6.5e-101	87.8
AXU47753.1\|3589019_3590075_-	phage protein	A0A0A8WFP3	Clostridium_phage	1.9e-185	94.3
AXU47754.1\|3590067_3590496_-	phage protein	J9QE34	Clostridium_phage	2.0e-72	93.7
AXU47755.1\|3590495_3590822_-	hypothetical protein	J9QE86	Clostridium_phage	1.2e-48	90.7
AXU47756.1\|3590837_3592355_-	phage cell wall hydrolase	A0A0K2SUC1	Clostridium_phage	1.3e-254	88.6
AXU47757.1\|3592594_3593230_-	peptidoglycan-binding LysM	J9QDY6	Clostridium_phage	1.6e-118	97.6
AXU47758.1\|3593229_3594984_-	phage protein	A0A0K2SUF9	Clostridium_phage	2.4e-225	92.3
AXU47759.1\|3595167_3595551_-	Phage XkdN-like protein	J9QED1	Clostridium_phage	6.8e-56	100.0
AXU47760.1\|3595599_3596049_-	phage-like element pbsx protein XkdM	A0A0A8WF55	Clostridium_phage	1.4e-76	93.3
AXU47761.1\|3596061_3597129_-	phage-like element pbsx protein XkdK	J9QDY5	Clostridium_phage	4.6e-187	95.8
AXU47762.1\|3597143_3597560_-	hypothetical protein	A0A0K2SUF6	Clostridium_phage	1.1e-64	94.9
AXU47763.1\|3597571_3597985_-	hypothetical protein	A0A0K2SUA7	Clostridium_phage	2.2e-68	94.2
AXU47764.1\|3597977_3598316_-\|head,tail	bacteriophage head-tail adaptor	A0A0A8WI51	Clostridium_phage	9.8e-59	98.2
AXU47765.1\|3598317_3598605_-	phi-105 family phage protein	A0A0A8WF50	Clostridium_phage	3.2e-42	95.8
AXU47766.1\|3598614_3599883_-\|capsid	phage major capsid protein, HK97 family	A0A0K2SUH4	Clostridium_phage	2.8e-231	97.9
AXU47767.1\|3599875_3600613_-\|protease	Clp protease	A0A0A8WFM9	Clostridium_phage	1.5e-123	88.6
AXU47768.1\|3600618_3601773_-\|portal	portal protein	J9QE83	Clostridium_phage	2.4e-205	93.5
AXU47769.1\|3601788_3603438_-\|terminase	terminase	A0A0A8WI49	Clostridium_phage	0.0e+00	94.9
AXU47770.1\|3603434_3603824_-	hypothetical protein	A0A090C9N7	Clostridium_phage	3.2e-61	100.0
AXU47771.1\|3603921_3604215_-	putative HNH endonuclease	J9QDZ3	Clostridium_phage	5.2e-48	91.8
AXU47772.1\|3604207_3604501_-	hypothetical protein	J9QE40	Clostridium_phage	8.3e-14	48.9
AXU47773.1\|3604697_3605297_-\|integrase	phage integrase family protein	A0A0A8WF93	Clostridium_phage	6.8e-79	89.8
3605121:3605138	attL	NA	NA	NA	NA
AXU47774.1\|3605583_3606411_-	hypothetical protein	NA	NA	NA	NA
AXU47775.1\|3606782_3607226_-	sigma factor	A0A1V0E028	Clostridioides_phage	6.9e-28	45.2
AXU47776.1\|3607246_3607369_-	hypothetical protein	NA	NA	NA	NA
AXU47777.1\|3607480_3607774_-	hypothetical protein	NA	NA	NA	NA
AXU47778.1\|3607787_3608045_-	hypothetical protein	NA	NA	NA	NA
AXU47779.1\|3608034_3608664_-	LuxR family transcriptional regulator	NA	NA	NA	NA
AXU47780.1\|3608678_3610013_-	phage-related replicative helicase	A0A222ZRG2	Mycobacterium_phage	7.2e-28	28.2
AXU47781.1\|3610027_3610792_-	phage protein	B4XYS6	Lactobacillus_phage	8.0e-24	29.4
AXU47782.1\|3610815_3611046_-	DNA binding domain-containing protein	NA	NA	NA	NA
AXU47783.1\|3611057_3611495_-	putative prophage LambdaCh01, transcriptional regulator	A0A1L2BY71	Clostridium_phage	1.3e-15	38.2
AXU47784.1\|3611522_3611741_-	DNA-binding protein	NA	NA	NA	NA
AXU47785.1\|3611905_3612253_+	DNA-binding protein	A0A090D830	Clostridium_phage	1.0e-10	34.8
AXU47786.1\|3612299_3613460_-	hypothetical protein	A0A1S5SAB0	Streptococcus_phage	3.2e-64	54.1
AXU47787.1\|3613927_3614047_-	hypothetical protein	NA	NA	NA	NA
AXU47788.1\|3614213_3614435_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXU47789.1\|3614482_3615661_+\|integrase	phage integrase	A0A1B0T6A8	Bacillus_phage	2.6e-37	31.0
AXU47790.1\|3616311_3616767_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	2.6e-38	54.5
3625959:3625976	attR	NA	NA	NA	NA

DBSCAN-SWA_12

3811672 : 3865322

Agrobacterium_phage(22.22%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU47954.1\|3811672_3812752_-\|protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	1.1e-15	26.0
AXU47955.1\|3812907_3814257_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AXU47956.1\|3814521_3816150_-	sodium-dependent phosphate transporter	NA	NA	NA	NA
AXU47957.1\|3816273_3817878_-	FAD-dependent dehydrogenase	NA	NA	NA	NA
AXU47958.1\|3817925_3818243_-	hypothetical protein	NA	NA	NA	NA
AXU47959.1\|3818247_3818613_-	hypothetical protein	NA	NA	NA	NA
AXU47960.1\|3818693_3819731_-	protein translocase	NA	NA	NA	NA
AXU47961.1\|3819983_3820568_-	hypothetical protein	NA	NA	NA	NA
AXU47962.1\|3820582_3821026_-	hypothetical protein	NA	NA	NA	NA
AXU47963.1\|3821026_3821899_-	fimbrial assembly protein	NA	NA	NA	NA
AXU47964.1\|3821952_3822303_-	type IV pilin	NA	NA	NA	NA
AXU47965.1\|3822356_3823442_-	type IV pilus-assembly protein	NA	NA	NA	NA
AXU47966.1\|3823612_3824956_-	type IV pilus-assembly protein	NA	NA	NA	NA
AXU47967.1\|3824984_3825665_-	membrane protein	NA	NA	NA	NA
AXU47968.1\|3826056_3827136_-	ATP/GTP-binding protein	NA	NA	NA	NA
AXU47969.1\|3827721_3829092_+	transporter	NA	NA	NA	NA
AXU47970.1\|3829356_3829968_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
AXU47971.1\|3829957_3832321_-\|protease	ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	3.1e-175	44.4
AXU47972.1\|3832500_3833013_+	chromate transport protein	NA	NA	NA	NA
AXU47973.1\|3833000_3833528_+	chromate transport protein	NA	NA	NA	NA
AXU47974.1\|3833598_3834849_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	6.1e-146	63.1
AXU47975.1\|3834867_3835452_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.3e-57	58.8
AXU47976.1\|3835601_3836888_-	trigger factor	NA	NA	NA	NA
AXU47977.1\|3837081_3837552_-	phosphoesterase	NA	NA	NA	NA
AXU47978.1\|3837551_3838901_-	ribonuclease PH	NA	NA	NA	NA
AXU47979.1\|3839060_3841085_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	4.9e-113	37.6
AXU47980.1\|3841270_3842209_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA
AXU47981.1\|3842310_3842733_-	hypothetical protein	NA	NA	NA	NA
AXU47982.1\|3842920_3844204_+	transporter	NA	NA	NA	NA
AXU47983.1\|3844281_3844797_-	electron transport protein	NA	NA	NA	NA
AXU47984.1\|3844796_3846173_-	hydrogenase	NA	NA	NA	NA
AXU47985.1\|3846197_3846749_-	electron transport protein	NA	NA	NA	NA
AXU47986.1\|3846785_3847001_-	hypothetical protein	NA	NA	NA	NA
AXU47987.1\|3846969_3847803_-	formate dehydrogenase accessory protein	NA	NA	NA	NA
AXU47988.1\|3847851_3849531_-	formate dehydrogenase H	NA	NA	NA	NA
AXU47989.1\|3849579_3849996_-	formate dehydrogenase H	NA	NA	NA	NA
AXU47990.1\|3850246_3851305_-	ABC transporter permease	NA	NA	NA	NA
AXU47991.1\|3851515_3852175_-	two-component response regulator	W8CYM9	Bacillus_phage	1.4e-29	34.1
AXU47992.1\|3852485_3853109_+	hypothetical protein	NA	NA	NA	NA
AXU47993.1\|3853182_3854016_+	hypothetical protein	NA	NA	NA	NA
AXU47994.1\|3854122_3854698_-	hypothetical protein	NA	NA	NA	NA
AXU47995.1\|3854990_3855269_-	Mor transcription activator domain-containing protein	NA	NA	NA	NA
AXU47996.1\|3855577_3856339_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
AXU47997.1\|3856510_3858637_-	exosporium glycoprotein	A0A285PXU9	Cedratvirus	7.3e-51	67.3
AXU47998.1\|3858715_3859792_-	glycosyl transferase	A0A1V0SAJ8	Catovirus	4.6e-17	25.8
AXU47999.1\|3860103_3860688_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.1e-48	51.8
AXU48000.1\|3860684_3861167_-	AraC family transcription regulator	NA	NA	NA	NA
AXU48001.1\|3861365_3862781_-	GntR family transcriptional regulator	NA	NA	NA	NA
AXU48002.1\|3862895_3863564_+	B3/4 domain protein	NA	NA	NA	NA
AXU48003.1\|3863739_3864258_-	nitroreductase	NA	NA	NA	NA
AXU48004.1\|3864409_3864733_+	transcriptional regulator	NA	NA	NA	NA
AXU48005.1\|3864737_3865322_-\|protease	protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP016102

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection