CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP012309	Clostridioides difficile strain DSM 28668 chromosome, complete genome	17 crisprs	csa3,WYL,cas3,DEDDh,cas14j,DinG,cas14k,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	4	50	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP012309_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_1

17863-17952

Orphan

Consensus_repeat	Method
TGTGCGTTAGCACTTTAAGCAACAGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP012309_1

>merge|CP012309|1|17863-17952|CRISPRCasFinder
TGTGCGTTAGCACTTTAAGCAACAGAATAAACTGAACGCATGTGAAGTTTGTTTGTTGGCGCTGTGCGTTAGCACTTTAAGCAACGGAAT

>CP012309|1|1|17863-17952|CRISPRCasFinder
TGTGCGTTAGCACTTTAAGCAACAGAAT	AAACTGAACGCATGTGAAGTTTGTTTGTTGGCGC
TGTGCGTTAGCACTTTAAGCAACGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU70078.1\|1561_2668_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
CP012309.1\|AXU70089.1\|21885_22767_+\|mechanosensitive-ion-channel-protein	unknown	unknown	gnl\|CDD\|182386
CP012309.1\|AXU70080.1\|3028_4144_+\|DNA-replication-and-repair-protein	unknown	unknown	gnl\|CDD\|234608
CP012309.1\|AXU70086.1\|9449_9857_+\|serine-protein-kinase	unknown	unknown	gnl\|CDD\|235217
CP012309.1\|AXU70083.1\|8560_8857_+\|Gas-vesicle-protein	unknown	unknown	gnl\|CDD\|378938
CP012309.1\|AXU70090.1\|23225_24497_+\|seryl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235461
CP012309.1\|AXU70096.1\|28834_30040_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|340861
CP012309.1\|AXU70093.1\|27439_27790_+\|DNA-binding-protein,-YbaB/EbfC-family	unknown	unknown	gnl\|CDD\|234669
CP012309.1\|AXU70085.1\|9128_9446_+\|anti-sigma-B-factor-antagonist	unknown	unknown	gnl\|CDD\|132914
CP012309.1\|AXU70095.1\|28542_28764_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU70087.1\|9856_10630_+\|RNA-polymerase-sigma-B-factor	unknown	unknown	gnl\|CDD\|274373
CP012309.1\|AXU70084.1\|8856_9117_+\|membrane-protein	unknown	unknown	unknown
CP012309.1\|AXU70082.1\|6065_8492_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
CP012309.1\|AXU70091.1\|24817_25273_+\|cytosine/adenosine-deaminase	unknown	unknown	gnl\|CDD\|223663
CP012309.1\|AXU70094.1\|27802_28402_+\|recombination-protein	unknown	unknown	gnl\|CDD\|234616
CP012309.1\|AXU70097.1\|39397_39811_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU70079.1\|2804_3011_+\|RNA-binding-mediating-protein	unknown	unknown	gnl\|CDD\|379097
CP012309.1\|AXU70088.1\|21364_21874_+\|small-molecule-binding-protein	unknown	unknown	gnl\|CDD\|224740
CP012309.1\|AXU70092.1\|25743_27381_+\|DNA-polymerase-III-subunits-gamma/tau	unknown	unknown	gnl\|CDD\|235505
CP012309.1\|AXU70081.1\|4144_6046_+\|DNA-gyrase-subunit-B	unknown	unknown	gnl\|CDD\|235542

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU70078.1\|1561_2668_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	1.36085e-135
CP012309.1\|AXU70089.1\|21885_22767_+\|mechanosensitive-ion-channel-protein	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	1.72542e-62
CP012309.1\|AXU70080.1\|3028_4144_+\|DNA-replication-and-repair-protein	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	4.03358e-130
CP012309.1\|AXU70086.1\|9449_9857_+\|serine-protein-kinase	gnl\|CDD\|235217	PRK04069, PRK04069, serine-protein kinase RsbW; Provisional.	1.87755e-44
CP012309.1\|AXU70083.1\|8560_8857_+\|Gas-vesicle-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	3.51616e-13
CP012309.1\|AXU70090.1\|23225_24497_+\|seryl-tRNA-synthetase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP012309.1\|AXU70096.1\|28834_30040_-\|glycosyl-transferase	gnl\|CDD\|340861	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins. beta-diglucosyldiacylglycerol synthase (processive diacylglycerol beta-glucosyltransferase EC 2.4.1.315) is involved in the biosynthesis of both the bilayer- and non-bilayer-forming membrane glucolipids. This family of glycosyltransferases also contains plant major galactolipid synthase (chloroplastic monogalactosyldiacylglycerol synthase 1 EC 2.4.1.46). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.60211e-148
CP012309.1\|AXU70093.1\|27439_27790_+\|DNA-binding-protein,-YbaB/EbfC-family	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	1.04649e-45
CP012309.1\|AXU70085.1\|9128_9446_+\|anti-sigma-B-factor-antagonist	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.08798e-25
CP012309.1\|AXU70087.1\|9856_10630_+\|RNA-polymerase-sigma-B-factor	gnl\|CDD\|274373	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily. This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:TIGR02885 and SigG:TIGR02850 as well as SigB:TIGR02941), and the high GC gram positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.	6.4918e-87
CP012309.1\|AXU70082.1\|6065_8492_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
CP012309.1\|AXU70091.1\|24817_25273_+\|cytosine/adenosine-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	7.52683e-52
CP012309.1\|AXU70094.1\|27802_28402_+\|recombination-protein	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	6.04881e-129
CP012309.1\|AXU70079.1\|2804_3011_+\|RNA-binding-mediating-protein	gnl\|CDD\|379097	pfam13275, S4_2, S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4.	5.13778e-28
CP012309.1\|AXU70088.1\|21364_21874_+\|small-molecule-binding-protein	gnl\|CDD\|224740	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only].	9.01143e-44
CP012309.1\|AXU70092.1\|25743_27381_+\|DNA-polymerase-III-subunits-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
CP012309.1\|AXU70081.1\|4144_6046_+\|DNA-gyrase-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0

>CP012309.1|AXU70087.1|9856_10630_+|RNA-polymerase-sigma-B-factor
MKNVANATHYLNMDTKELFNLYNKNKNVDIRNILIERHLYLARLLAKKYINKGVDFEDIYQVASLALIYAIDRYDVEKGFEFSSFATPTIVGEIKKYFRDKVWTLRVPRRIQELSKKISDAKIKLEQENKKHPKVKDIADYIGVSEEDVLEAMEASYGYQPMSLDSSSNDDSEDKDITLIDKIGKEEGNFGSIEYEDFINKFIETLNELEVKIFKDRFFFDKTQSSIAKELGISQMTVSRLEKKVVEKLKKEYEKNL
>CP012309.1|AXU70086.1|9449_9857_+|serine-protein-kinase
MACETIKMEITTNPDYVSIIRLTASGIANKMGFPIDDIEDIKVAVSEACTNAIKHSKDDVFNIVFNILDNAINIEIQDNGKGYDVSSISTPDLENPKESGLGLFIIKTLMDDVDIESEHNQGTKIKMTKYLGVDI
>CP012309.1|AXU70085.1|9128_9446_+|anti-sigma-B-factor-antagonist
MSMNIDSNLDSQNKFWNVCLDGELDVSTADKLKEHLHALIEKNMLDVKINLKDLDYIDSTGLGAMIGVLKKLKINEKEIYIVNPKSNVRKIFTITGLDKIFKVEG
>CP012309.1|AXU70084.1|8856_9117_+|membrane-protein
MNAWGWQIGAVLVGSSALIVAIYLAKTLNSINKVVEKAYKIVDYNERHIQDIVENASSISKGIDDIVYVINKILSIGNIFKIIKRK
>CP012309.1|AXU70083.1|8560_8857_+|Gas-vesicle-protein
MCNKRSCKKGGFLLLGAILGFIFGMFFAPKKGSELRKETKEKFNDVKENPKEVLHETFNDVKERIINLVDDDNNEEDIKISEEDIVISKSFDDEGDVN
>CP012309.1|AXU70082.1|6065_8492_+|DNA-gyrase-subunit-A
MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIVIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEEE
>CP012309.1|AXU70081.1|4144_6046_+|DNA-gyrase-subunit-B
MKQEYGASQIQVLEGLEAVRKRPGMYIGSTSPRGLHHLVYEVVDNSIDEALQGYCSDIYVSINEDGSVLVKDNGRGIPVEIHPKTGKSTLETVLTNLHAGGKFGGGGYKVSGGLHGVGVSVVNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGESQDKGTMIQFMPDETIFDEIEFKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKEFHYTGGLVEYIKYLNKSRTGIHDDIVYIDKKVDDCFVELAMQYTDGYTENIYSFANNINTHEGGSHLSGFKAALTKTVNDYAKRNKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDSVTVDELGSFLEENPSTARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDPSKSEIFLVEGDSAGGSAKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQPPLYKVTKQKKEHYVYSDKELNILLDEIGRNGVELQRYKGLGEMNAEQLWETTMNPETRTLLQVTVEDAAIADEVFSMLMGDKVAPRKEFIEENARFVRNLDI
>CP012309.1|AXU70080.1|3028_4144_+|DNA-replication-and-repair-protein
MKLKSLQLVNFRNYKKLHLEFNEKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEMVRFNSENLYIGGSFSKYNKYSLIELIIGKDKKGIRINKVPLQKIQELLGNLNVVIFSPEDLRLVKEGPKERRAFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKNIHVDEALLDVYDDTLAKYGSYIYILRRDFIKKIANISENMHMNLTNGVERLSIRYKNQINITDEDTIDTVYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNIFINDLDARLFGSQGQQRTASISLKLSEIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLSNVQMFITSAEVSHKKIFDEKNVTIFNIENGDVISIENGGN
>CP012309.1|AXU70079.1|2804_3011_+|RNA-binding-mediating-protein
MTEITIESEYIKLDQFLKLAEIASTGGHAKFLIQEGLVTVNDEIELRRGKKIKSGDIVEIEGTKIKVL
>CP012309.1|AXU70078.1|1561_2668_+|DNA-polymerase-III-subunit-beta
MKIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQAEIIEKGDVVVDARLFGDIIRKLPDSFVEIETDSENNIYINCVNSRFKIKGYAAKEFPKLPELNEEDLYSIPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNLVAIDGYRLAVKSCSVDSLTENIKVIIPGKTLIDVNSLLSGEDNVKVGFNEKNAIFIINDTKIITRLLEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSIRDKVMAITSNTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNIDNEEIFIEFTTNVNPCIIKPTDDVNYIYLLLPVRISSNI
>CP012309.1|AXU70088.1|21364_21874_+|small-molecule-binding-protein
MNSNERRSKLIDILKESKHPVKGGTLAELLNVSRQVIVQDIALIRARGFEIIATPQGYIIYNQPYFTKQIKCKNHKDSKEIYDELKIIVDLGGIIKDVIVNHPTYGQITAELNIYSKMDIDNFMKKVETNEFKQLSVLTECSHIHTIEAIKEETIEAIVKELKDNGILS
>CP012309.1|AXU70089.1|21885_22767_+|mechanosensitive-ion-channel-protein
MNFLSLAKTASTNSNITKRTLENMLDNFSDNIPNIIYAIIVFVIGIYISKIVRRMVSKFLIKYGMSKGVNNFIVYGIYISMLSIISLISLGIIGIQTTSVVAVLGAAGFSIGLAFKEILSNLGSGMIILFFKPFNIGDYIQGSGVEGTVSDIQIFSTVLKTPDNKTIIIPNFQLTSNNIINYTHQNKRRIDFSYNISYDSDIDVVKSILNEIFTNEKRILNDPKPIIGLNSIGNNTMQIVARPWVKTDDYWDVYFDVMEKVKNKFDENDIKVPFVPSSLLFNNTGNLNTMDKR
>CP012309.1|AXU70090.1|23225_24497_+|seryl-tRNA-synthetase
MLDIKRIRENLDDIKKAMERRGEREFDLDAVVELDNKRREILQEVEVMKNELNVNSKKIPQLIKEGKDVTEEKARLKELSDKIKGIDEKVKEVEAKMEYTLMRIPNVPHPEVPQGETDEDNVQIRTWGEPTKFDFEHKAHWDIGTGLGILDFERAGKITGSRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQLPKFEEDMFKIEGLEYFLIPTAEVPVTNIHANEILDVAELPIKYCAYTPCFRSEAGSAGRDTRGLVRQHQFNKVELVKFVKPEDSYNELESLTHDAETMLQMLGLPYRVVKICTGDLGFTAAFKYDLEVWMPSYNRYVEISSCSNFEDFQARRAGIRFKRDKKSKAEYVHTLNGSGLAIGRCLAAILENYQQADGSVVVPEELRPYMGVDVIK
>CP012309.1|AXU70091.1|24817_25273_+|cytosine/adenosine-deaminase
MESSFYMKEALKEAYKAYNKKETPIGAIIVKDNQIIARAHNLTETLKDSTAHAEILAIKQASEKLGGWRLTDCDLYVTMEPCIMCSGAIVNSRIKKLIIGTRHVKNSYIEKQHEFKLDYFNNNNVKVAFDVLQEECSIILQEFFKALRKRD
>CP012309.1|AXU70092.1|25743_27381_+|DNA-polymerase-III-subunits-gamma/tau
MHKALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNCLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELMGSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDLIDHFRNLMVCKVSSELDEIISLPEETIEQLKIQSKNIDINDLIRILNILSTTQDDIKSSSNPRVLVEITIMKIAQPMFDESKEALIKRVENLEKMIELGNFKSEKIGNNKEKEYEVDREIDVKQENVVYEDVKNEDVILIESSWKNILKQIKKDKKMPIYALLSEVKSFNVYSNMLYVIFDDKFDFAKTRLSSQDTINYLEKTIRDVLNRSFNVKIVLTSEVKDINLEVKEKKDIGEEILKNIVSEEILEIKDSIDENESK
>CP012309.1|AXU70093.1|27439_27790_+|DNA-binding-protein,-YbaB/EbfC-family
MAKKGFGGGMMPGGGNMNNLLKQAQKMQENMQKAQQELESKEVEASVGGGAVTVKVNGKKEVIDITIKPEVVDPDDIEMLQDLVLSAVNQALRNIDDIQASQMSKVTGGMNIPGLF
>CP012309.1|AXU70094.1|27802_28402_+|recombination-protein
MQVYTGPITRLIEEFSKLPGVGRKTAQRLAFHIINMNTNDVEALSKAIIDAKREIRYCSICCNITDTDPCSMCSNKSRDSSVICVVEDPRDVAAMERTREFKGQYHVLNGVISPMDGIGPDMLKIKELIQRLGNQEVKEIIMATNPTIEGEATAMYIARLVKPMGIKVTRIAHGLPVGGDLEYADEVTISKALEGRREI
>CP012309.1|AXU70095.1|28542_28764_+|hypothetical-protein
MKPIMNLEEHNAMKEKRVKKMKSKDKPKYDDFEDISFSNKKKTKKNVRNKNAEFRNNYKNYQYDYEEDFYEPI
>CP012309.1|AXU70096.1|28834_30040_-|glycosyl-transferase
MSKKVLIMSASTGGGHNRAALAIKEELTSKTLDGEPIECEIIDSLKLVNNTMDKIISRGYEKSAIYTPKAYGSVYRLSETNLLSKNEFKDNLLITFMAKKFKKLIRSEKPDLIIGTHPFPMIALSTLKKNFNLHNNESNAYTEHFYKHYTNTINVPPLISVLTDYTTHSTWIQNEIDYYIVGHEYVKELLVFDGVEPSKIRTFGIPVEKSFLSHRDKDIVLSELNLSPDKLTVLLMGGSFGAGNIKETLDELLDTDRDFQILVITGKNESLKEKIEKKLMSRYHDKNVCVLGYTDKMNDILASIDVLVSKPGGLTTTEALLKDVPMIVPYYIPGQEEENLDFLSNCGAALRTTKKYNLSILLKVLIDDPSRLEMLKRNIKSIRKSNSAQNIANLILNIISG
>CP012309.1|AXU70097.1|39397_39811_+|hypothetical-protein
MYIVIGNEIVDSEELKIIIDKNSEFKVEKDLSKSTKREDVIAYQLSIDLNYLDSLINEQCNLASLSDEEKFDEYMTLSDELALDLEELMPKYTIINARAYKLDEVDGIVKIILAVAYADLGHLKLSDVVKRLSRQVD

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Crispr_ID: CP012309_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_2

138113-138199

Orphan

Consensus_repeat	Method
GTTAGCACTTTAAGCAACAGAATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP012309_2

>merge|CP012309|2|138113-138199|CRISPRCasFinder
GTTAGCACTTTAAGCAACAGAATAAACTGAACGCATGTGAAGTTTGTTTGTTGGCGCTGTGCGTTAGCACTTTAAGCAACGGAATAA

>CP012309|2|2|138113-138199|CRISPRCasFinder
GTTAGCACTTTAAGCAACAGAATAA	ACTGAACGCATGTGAAGTTTGTTTGTTGGCGCTGTGC
GTTAGCACTTTAAGCAACGGAATAA

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU70199.1\|164394_164610_+\|ferredoxin	unknown	unknown	gnl\|CDD\|225131
CP012309.1\|AXU70188.1\|127100_127532_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP012309.1\|AXU70191.1\|141759_142944_-\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|235596
CP012309.1\|AXU70181.1\|121603_122227_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
CP012309.1\|AXU70184.1\|123733_124567_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|275313
CP012309.1\|AXU70196.1\|161681_162584_+\|phosphate-butyryltransferase	unknown	unknown	gnl\|CDD\|180267
CP012309.1\|AXU70189.1\|127560_127953_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP012309.1\|AXU70183.1\|123272_123614_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
CP012309.1\|AXU70193.1\|145689_146229_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274161
CP012309.1\|AXU70187.1\|126249_126981_+\|tRNA-pseudouridine-synthase-1	unknown	unknown	gnl\|CDD\|234577
CP012309.1\|AXU70194.1\|159360_160200_+\|DNA-integrity-scanning-protein-DisA	unknown	unknown	gnl\|CDD\|224539
CP012309.1\|AXU70186.1\|125414_126218_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223692
CP012309.1\|AXU70200.1\|164638_165718_+\|2-ketoisovalerate-ferredoxin-reductase	unknown	unknown	gnl\|CDD\|235942
CP012309.1\|AXU70198.1\|163674_164352_+\|ATP/GTP-binding-protein	unknown	unknown	unknown
CP012309.1\|AXU70197.1\|162605_163685_+\|butyrate-kinase	unknown	unknown	gnl\|CDD\|235099
CP012309.1\|AXU70185.1\|124554_125421_+\|cobalt-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|237455
CP012309.1\|AXU70195.1\|160196_161378_+\|membrane-associated-protein	unknown	unknown	gnl\|CDD\|227193
CP012309.1\|AXU70190.1\|128411_129164_+\|germination-specific-N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|274337
CP012309.1\|AXU70192.1\|143316_145668_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|235937
CP012309.1\|AXU70182.1\|122304_123252_+\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU70199.1\|164394_164610_+\|ferredoxin	gnl\|CDD\|225131	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion].	6.6539e-10
CP012309.1\|AXU70188.1\|127100_127532_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.05591e-98
CP012309.1\|AXU70191.1\|141759_142944_-\|aspartate-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	6.23418e-180
CP012309.1\|AXU70181.1\|121603_122227_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	1.14224e-119
CP012309.1\|AXU70184.1\|123733_124567_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|275313	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	2.34653e-173
CP012309.1\|AXU70196.1\|161681_162584_+\|phosphate-butyryltransferase	gnl\|CDD\|180267	PRK05805, PRK05805, phosphate butyryltransferase; Validated.	1.26101e-179
CP012309.1\|AXU70189.1\|127560_127953_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	3.31674e-84
CP012309.1\|AXU70183.1\|123272_123614_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	6.12837e-66
CP012309.1\|AXU70193.1\|145689_146229_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274161	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism, Protein fate, Protein modification and repair].	3.78376e-50
CP012309.1\|AXU70187.1\|126249_126981_+\|tRNA-pseudouridine-synthase-1	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	6.63504e-129
CP012309.1\|AXU70194.1\|159360_160200_+\|DNA-integrity-scanning-protein-DisA	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	1.4029e-80
CP012309.1\|AXU70186.1\|125414_126218_+\|ABC-transporter-permease	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.3503e-50
CP012309.1\|AXU70200.1\|164638_165718_+\|2-ketoisovalerate-ferredoxin-reductase	gnl\|CDD\|235942	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated.	0
CP012309.1\|AXU70197.1\|162605_163685_+\|butyrate-kinase	gnl\|CDD\|235099	PRK03011, PRK03011, butyrate kinase; Provisional.	0
CP012309.1\|AXU70185.1\|124554_125421_+\|cobalt-transporter-ATP-binding-subunit	gnl\|CDD\|237455	PRK13637, cbiO, energy-coupling factor transporter ATPase.	0
CP012309.1\|AXU70195.1\|160196_161378_+\|membrane-associated-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	1.22215e-23
CP012309.1\|AXU70190.1\|128411_129164_+\|germination-specific-N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|274337	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Sporulation and germination].	2.38976e-78
CP012309.1\|AXU70192.1\|143316_145668_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|235937	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
CP012309.1\|AXU70182.1\|122304_123252_+\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	0

>CP012309.1|AXU70190.1|128411_129164_+|germination-specific-N-acetylmuramoyl-L-alanine-amidase
MEYYSVFISIHIQGDVVRKYIKHIIFSFAMICLVVVSIFEIKNISEDVIKYMPVTNKTIILDAGHGGIDPGALNKDKSTSEKDINLAITLKLRELIESSGGLVILTREDDSSLYKEENNKTTRQKYNENLKNRKEIISNSNANMFVSIHLNAFEQSKYYGAQTFYPKDKQDSKELSKCIQEELKRVVDKTNNREVKPRDDIYLLKENNIPSVLIECGFLSNEKECKLLTDETYQEKIAWAIYIGIQKYLS
>CP012309.1|AXU70189.1|127560_127953_+|30S-ribosomal-protein-S9
MANVQYYGTGRRKSSVARVRLVAGEGNILVNGRALENYFNYETLIRDVKQPLVLTGNENKYDVIVKVEGGGFTGQAGAIRHGISRALLKADLDLRPALKKEGFLTRDARMKERKKYGLKAARRAPQFSKR
>CP012309.1|AXU70188.1|127100_127532_+|50S-ribosomal-protein-L13
MKSYIAKPADVQRKWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKYYRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEHTHAAQNPEVLNFK
>CP012309.1|AXU70187.1|126249_126981_+|tRNA-pseudouridine-synthase-1
MRNIKIKIQYNGKNYCGWQKQPDSLGIQGTIERAIYDITKEETSLIGSGRTDSGVHAIGQIANFKINSGISIESIPMALNAKLPKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSKFRNPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMSSGSSVKDTVRTIYDIDISKKDDLITFEISGNGFLYNMVRIIVGTLVDMGRGRINEPFLDIIQSKTRSRCGHTAPAQGLFLKKVHY
>CP012309.1|AXU70186.1|125414_126218_+|ABC-transporter-permease
MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWPYIVVLLCLLAMIKLANIPVKYIVKGVKPLKWIILFTFLINIFFLPGDEIWSFGFLAITKQGLRQAIFMAIRLIFLVVGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMMTIALRFIPTLLDETDKIMKAQMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADELAMAMEARCYRGGHNRTKMRESVISRRDYMACVFQVVYLGAIIATRFIAI
>CP012309.1|AXU70185.1|124554_125421_+|cobalt-transporter-ATP-binding-subunit
MSIIVKNLTHIYNEGMPFASKALDDVSFEIKDRDFVGLIGHTGSGKSTLIQHLNGLLKPSSGEIFINDFNITDKNLNLTEIRKRVGVVFQYPEYQLFEETIDKDIAFGPSNLGLEESEIHNRVKASMEAVGLDYEGFKDKSPFELSGGQKRRVAIAGVIAMNPEVLILDEPTAGLDPGGRDEIFNLIKDLHEKKNMTIILSSHSMDDMAKLAKTLIVMNHGSVEFMGTPREVFKSNASKLKDIGLDIPQVLELALKLREKGFDISEDILTLEEAKQEILKVVRGRGLC
>CP012309.1|AXU70184.1|123733_124567_+|ABC-transporter-ATP-binding-protein
MDNIVKVNNISFEYITDEAKLKAIDNLSLDVKKGEFVAIIGHNGSGKSTLSKNLNAILMPTEGNILIDDMDTKEEERLWDIRQTAGMVFQNPDNQIVATIVEEDVAFGPENLGIEPKEIRRIVEESLKSVGMYDLRDRQPHLLSGGQKQRVAIAGIIAMRPKCIIFDEATAMLDPSGRKEVMKTIKRLNKEENITVIHITHFMEEAVEADRVVVMEKGKKILEGTPREVFSKIKMLKEIGLDVPCMTELSSLLIEEGINISSDILTVDEMVMELCQL
>CP012309.1|AXU70183.1|123272_123614_+|50S-ribosomal-protein-L17
MAKYRKLGRETAHRNLMLRNLVTCLLRSGRIETTVTRAKETRRMAEKMITLAKRGDLHARRQVLAYVMDETVVNNLFTDLAPKYAERNGGYTRIIKIGPRKGDAAEMAFIELV
>CP012309.1|AXU70182.1|122304_123252_+|DNA-directed-RNA-polymerase-subunit-alpha
MIEIEKPKVDIVELSEDYRYGKFVIEPLERGYGITIGNALRRILLSSLPGVAVNAIKIDGVLHEFSTIPGVKEDVTEIILTLKELSATIDGEGSRTLKIEAQGPCSITGADIICPPDVEILSKDLAIATLDDNAKLNMEIFVDKGRGYVSAEENKTENVPIGVLPVDSIYTPVEKVSYHVENTRVGQKTDYDKLVLEVWTNGSINPQEGISLAAKVLVEHLNLFIDLTEHVSSVEIMVEKEEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVEELANKSEDDMMKVRNLGKKSLEEVIQKLEELGLGLKPSEE
>CP012309.1|AXU70181.1|121603_122227_+|30S-ribosomal-protein-S4
MARYTGASCRQCRREGMKLFLKGDRCYTDKCAIVKRNYAPGQHGQGRKKVSNYGLQLREKQKVKRIYGVLETQFRNLYERAENMPGKAGENLLSLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFKNLVEVNSRIAPKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYSK
>CP012309.1|AXU70191.1|141759_142944_-|aspartate-aminotransferase
MLSKRLNFITPSYTIGISSKVKEMESNGVKVINLSIGEPDFNVPNNAKSYGIDSLNKDYTKYDLVPGLKILREEICKKLIEENNCNYSIDEIVVSSGAKNSITNTLLALTDEGDEVLLPKPYWVSYPEMIKLVNAVPVFIDTKKENGFKLTKEELEKSITDKTKILVINNPSNPTGSVYTKDELIEIVDICIQNKIYILADEIYEKICYTGEFTSIASLSEEAKDITITINGFSKSAAMTGLRLGYTASNKTIAKAMSSIQGHLISHPSLTAQYIAYGALKDCSIDIDNMVKTYKSRRDLIKSKLDSIDNVGYVNPNGAFYIFIDLSKVSEKFEYKDSFSIEFCNQFLEEYNVAVVPGIAFGMDKYIRISYACSENTFLSGLDKLKEFVYKIMA
>CP012309.1|AXU70192.1|143316_145668_+|anaerobic-ribonucleoside-triphosphate-reductase
MVEFVKKRDGRVIPFNEDRITRAIFLAATNVAEREGIVPDYKLSEQLTQEVIKFLNHKYSESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAEDADIKRENANINGNTAMGTMLQYGSTVSKEFCKTHILKPEHSFAHDNGDIHIHDMDFLNMGTLTCCQIDVKKLFNGGFSTGHGFLREPQDIISYGALAAIAIQSNQNDQHGGQSIPFFDYGLAEGVYKTFKKFYIGNLAKALKLFKGIENNDVIKNIVYNTEKETNQKVGLKRDELYLNLEKEKLIQTFDIDDELVNKMQNFAFEESYRETDKKTYQSMEAFIHNLNTMHSRAGAQVPFSSVNFGTDTSEEGRMVTKNLLLSQERGLGNGETPIFPILIFKVKEGINLNPKDPNYDLFKLSCRVSAKRLFPNFSFLDAPFNAKYYKKGEPDTEATYMGCRTRVLSNVCGSETVSGRGNISFTTVNLPRLGIKHGIINNEKANLDGFFEELDEKINLIIEQLLERLEVQGNKKMKNFPFLMGQGVWKGSDDLGPEDTLKEVIKQGTLTIGFIGLAECLIALIGKHHGESKEAQELGLKIVSHMRHKMDEATDKYKLNFSLMGTPAEGLSGRFTKIDKKVYGEIKGITDKEYYTNSFHVPVYYNISAYDKIEIEAPYHELTNAGHITYVELDGDPSDNLEAFETVIKAMKDLGIGYGSINHPVDRDPICGFSGVITSNICPVCGRNEDESDIKFERIRRITGYLVGTVDRFNNAKKAEVRDRVKHR
>CP012309.1|AXU70193.1|145689_146229_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MKIRMSSTISYDSIVDGPGLRMVIWTQGCIHNCKECHNPQTHDLCGGFYMDTEEIINKVKSLKLQKGITLSGGEPFLQPEPLEEIAREAKINGLDVWSYTGFTFEQLLDKKNRAYFKNLNLLKQIDILVDGKFIAEKKDISLKFRGSSNQRIIDVQKSLKYKKVFLVEQYMKDDLSIAE
>CP012309.1|AXU70194.1|159360_160200_+|DNA-integrity-scanning-protein-DisA
MLDINSFLNGFFNIILRMSIYDLIDISIVAYIFYKIFMFIKDTRAEQVFKGIIFLLLATQLSNTFKLHTVYWISLKALDYGVIAALIIFQPEFRAGLEHIGRAKFNLFGKNVNTSEETLNRNIEEIVEALYSLSRQKIGALIIMERETRISDIINTGTIIDAEISRQLLINIFIPNTPLHDGAVVIRDSKVKAAACFLPLTESKDLSKDLGTRHRAGIGVSEVSDCITLIVSEETGGVSIAKAGKLYRDISRERMMNILRSNLKTNTETRSFFKGGIFK
>CP012309.1|AXU70195.1|160196_161378_+|membrane-associated-protein
MINRLKNNTKIKIISFLSAIALWMYVMAVVDPEETKGFEDIPVSISNMSDLKDKNLVIYPDEKLTADVYIKGSLSKVQSVKKEDIHVYGTIEDPIQGQKEVYLKANIPQGVTLEFKHDVLVVNLEKNIKEKRDIKVEVSGNSKRNINKIELSKEFVDVSGPRTLVKEVKSVRANLDVGNETDDFSKKLQLIPLNSDGTKVEGVTLSSSFVTAKIELLKEKIVPIRVSLNDNKDNDVLKNYKLSKEQVTIKGKKEDIDKISYIKTKPIDLADLANGEEKEVSLEIPEGITLEDSSITIKLNDTKQLSAEFLYNAGDIELRNIPTNMDNPNVISDVDIKVVVESTEDLSKLNKKDISLYIDLSQGPEEDSKYKIKYETTYQFKKINIEPNIVEVE
>CP012309.1|AXU70196.1|161681_162584_+|phosphate-butyryltransferase
MRSFEEVIKFAKERGPKTISVACCQDKEVLMAVEMARKEKIANAILVGDIEKTKEIAKSIDMDIENYELIDIKDLAEASLKSVELVSQGKADMVMKGLVDTSIILKAVLNKEVGLRTGNVLSHVAVFDVEGYDRLFFVTDAAMNLAPDTNTKKQIIENACTVAHSLDISEPKVAAICAKEKVNPKMKDTVEAKELEEMYERGEIKGCMVGGPFAIDNAVSLEAAKHKGINHPVAGRADILLAPDIEGGNILYKALVFFSKSKNAGVIVGAKAPIILTSRADSEETKLNSIALGVLMAAKA
>CP012309.1|AXU70197.1|162605_163685_+|butyrate-kinase
MSKIFKILTINPGSTSTKIAVFDNEDLVFEKTLRHSSEEIGKYEKVSDQFEFRKQVIEEALKEGGVKTSELDAVVGRGGLLKPIKGGTYSVSAAMIEDLKVGVLGEHASNLGGIIAKQIGEEVNVPSYIVDPVVVDELEDVARISGMPEISRASVVHALNQKAIARRYAREINKKYEDINLIVAHMGGGVSVGAHKNGKIVDVANALDGEGPFSPERSGGLPVGALVKMCFSGKYTQDEIKKKIKGNGGLVAYLNTNDAREVEERIEAGDEKAKLVYEAMAYQISKEIGASAAVLKGDVKAILLTGGIAYSKMFTEMIADRVKFIADVKVYPGEDEMIALAQGGLRVLTGEEEAQVYDN
>CP012309.1|AXU70198.1|163674_164352_+|ATP/GTP-binding-protein
MITNDKRIRIITGHYGSGKSEFAMNYVVKLRDMVSGKVAIADLDVVNVYFRTREKKELMKSLGIQPIDSSINAPTLDLPAVSAEVMSPMVDHSYNSVIDLGGDNVGARVIGRFSHLLKEGDYDMLFVINANREKTQTSEEVIQYIKEIEKSSKLKVTGLINNTHLIRFTTIDDVLRGQKVAKEVSEKCNIPIRYVACLENLVEQLPKDLEGEIFPIKLYMREDWM
>CP012309.1|AXU70199.1|164394_164610_+|ferredoxin
MAKGKVSFNQERCKGCGLCVEACPVKIIQLDSNVINKKGYNPATVFEMEKCIGCASCATMCPDVVITVERD
>CP012309.1|AXU70200.1|164638_165718_+|2-ketoisovalerate-ferredoxin-reductase
MAKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELPKIGGAFVQAESEVSAINMVYGGAGAGARVMTSSSSPGVALKQEGITYAVGAEVPCVVLNVMRGGPGLGSIQPSQADYFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYYRSPVMVVADGMIGQMMEPVEFRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEVLEDHCWHLQEKFDAMEKNEVQYEMYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKAGLIRPKVLWPFPFEAFNQIPNARNILTVEMSMGQMVEDVKMAVEGKLPVYFHGRPGGMTPTPAEIVEKAKKIIAGELVAGGAR

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Crispr_ID: CP012309_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_3

146710-146788

Orphan

Consensus_repeat	Method
TGTTTATAATGTGGATAATATTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP012309_3

>merge|CP012309|3|146710-146788|CRISPRCasFinder
TGTTTATAATGTGGATAATATTTAATGTAATAAGTTAAAGCAATATGAATCAACTGTTTATAATGTGGATAATATTATA

>CP012309|3|3|146710-146788|CRISPRCasFinder
TGTTTATAATGTGGATAATATTTAA	TGTAATAAGTTAAAGCAATATGAATCAAC
TGTTTATAATGTGGATAATATTATA

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU70199.1\|164394_164610_+\|ferredoxin	unknown	unknown	gnl\|CDD\|225131
CP012309.1\|AXU70188.1\|127100_127532_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP012309.1\|AXU70191.1\|141759_142944_-\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|235596
CP012309.1\|AXU70196.1\|161681_162584_+\|phosphate-butyryltransferase	unknown	unknown	gnl\|CDD\|180267
CP012309.1\|AXU70184.1\|123733_124567_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|275313
CP012309.1\|AXU70189.1\|127560_127953_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP012309.1\|AXU70202.1\|166470_167028_+\|subunit-of-oxidoreductase	unknown	unknown	gnl\|CDD\|376567
CP012309.1\|AXU70195.1\|160196_161378_+\|membrane-associated-protein	unknown	unknown	gnl\|CDD\|227193
CP012309.1\|AXU70193.1\|145689_146229_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274161
CP012309.1\|AXU70187.1\|126249_126981_+\|tRNA-pseudouridine-synthase-1	unknown	unknown	gnl\|CDD\|234577
CP012309.1\|AXU70194.1\|159360_160200_+\|DNA-integrity-scanning-protein-DisA	unknown	unknown	gnl\|CDD\|224539
CP012309.1\|AXU70186.1\|125414_126218_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223692
CP012309.1\|AXU70200.1\|164638_165718_+\|2-ketoisovalerate-ferredoxin-reductase	unknown	unknown	gnl\|CDD\|235942
CP012309.1\|AXU70198.1\|163674_164352_+\|ATP/GTP-binding-protein	unknown	unknown	unknown
CP012309.1\|AXU70197.1\|162605_163685_+\|butyrate-kinase	unknown	unknown	gnl\|CDD\|235099
CP012309.1\|AXU70185.1\|124554_125421_+\|cobalt-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|237455
CP012309.1\|AXU70201.1\|165717_166470_+\|subunit-of-oxidoreductase	unknown	unknown	gnl\|CDD\|239470
CP012309.1\|AXU70203.1\|167197_168544_+\|phosphoglucomutase/phosphomannomutase-mutase	unknown	unknown	gnl\|CDD\|237670
CP012309.1\|AXU70190.1\|128411_129164_+\|germination-specific-N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|274337
CP012309.1\|AXU70192.1\|143316_145668_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|235937

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU70199.1\|164394_164610_+\|ferredoxin	gnl\|CDD\|225131	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion].	6.6539e-10
CP012309.1\|AXU70188.1\|127100_127532_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.05591e-98
CP012309.1\|AXU70191.1\|141759_142944_-\|aspartate-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	6.23418e-180
CP012309.1\|AXU70196.1\|161681_162584_+\|phosphate-butyryltransferase	gnl\|CDD\|180267	PRK05805, PRK05805, phosphate butyryltransferase; Validated.	1.26101e-179
CP012309.1\|AXU70184.1\|123733_124567_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|275313	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	2.34653e-173
CP012309.1\|AXU70189.1\|127560_127953_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	3.31674e-84
CP012309.1\|AXU70202.1\|166470_167028_+\|subunit-of-oxidoreductase	gnl\|CDD\|376567	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase. This family includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyzes the final step in the fermentation of carbohydrates in anaerobic microorganisms. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.	1.49735e-43
CP012309.1\|AXU70195.1\|160196_161378_+\|membrane-associated-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	1.22215e-23
CP012309.1\|AXU70193.1\|145689_146229_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274161	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism, Protein fate, Protein modification and repair].	3.78376e-50
CP012309.1\|AXU70187.1\|126249_126981_+\|tRNA-pseudouridine-synthase-1	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	6.63504e-129
CP012309.1\|AXU70194.1\|159360_160200_+\|DNA-integrity-scanning-protein-DisA	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	1.4029e-80
CP012309.1\|AXU70186.1\|125414_126218_+\|ABC-transporter-permease	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.3503e-50
CP012309.1\|AXU70200.1\|164638_165718_+\|2-ketoisovalerate-ferredoxin-reductase	gnl\|CDD\|235942	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated.	0
CP012309.1\|AXU70197.1\|162605_163685_+\|butyrate-kinase	gnl\|CDD\|235099	PRK03011, PRK03011, butyrate kinase; Provisional.	0
CP012309.1\|AXU70185.1\|124554_125421_+\|cobalt-transporter-ATP-binding-subunit	gnl\|CDD\|237455	PRK13637, cbiO, energy-coupling factor transporter ATPase.	0
CP012309.1\|AXU70201.1\|165717_166470_+\|subunit-of-oxidoreductase	gnl\|CDD\|239470	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.	1.15077e-77
CP012309.1\|AXU70203.1\|167197_168544_+\|phosphoglucomutase/phosphomannomutase-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
CP012309.1\|AXU70190.1\|128411_129164_+\|germination-specific-N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|274337	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Sporulation and germination].	2.38976e-78
CP012309.1\|AXU70192.1\|143316_145668_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|235937	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional.	0

>CP012309.1|AXU70193.1|145689_146229_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MKIRMSSTISYDSIVDGPGLRMVIWTQGCIHNCKECHNPQTHDLCGGFYMDTEEIINKVKSLKLQKGITLSGGEPFLQPEPLEEIAREAKINGLDVWSYTGFTFEQLLDKKNRAYFKNLNLLKQIDILVDGKFIAEKKDISLKFRGSSNQRIIDVQKSLKYKKVFLVEQYMKDDLSIAE
>CP012309.1|AXU70192.1|143316_145668_+|anaerobic-ribonucleoside-triphosphate-reductase
MVEFVKKRDGRVIPFNEDRITRAIFLAATNVAEREGIVPDYKLSEQLTQEVIKFLNHKYSESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAEDADIKRENANINGNTAMGTMLQYGSTVSKEFCKTHILKPEHSFAHDNGDIHIHDMDFLNMGTLTCCQIDVKKLFNGGFSTGHGFLREPQDIISYGALAAIAIQSNQNDQHGGQSIPFFDYGLAEGVYKTFKKFYIGNLAKALKLFKGIENNDVIKNIVYNTEKETNQKVGLKRDELYLNLEKEKLIQTFDIDDELVNKMQNFAFEESYRETDKKTYQSMEAFIHNLNTMHSRAGAQVPFSSVNFGTDTSEEGRMVTKNLLLSQERGLGNGETPIFPILIFKVKEGINLNPKDPNYDLFKLSCRVSAKRLFPNFSFLDAPFNAKYYKKGEPDTEATYMGCRTRVLSNVCGSETVSGRGNISFTTVNLPRLGIKHGIINNEKANLDGFFEELDEKINLIIEQLLERLEVQGNKKMKNFPFLMGQGVWKGSDDLGPEDTLKEVIKQGTLTIGFIGLAECLIALIGKHHGESKEAQELGLKIVSHMRHKMDEATDKYKLNFSLMGTPAEGLSGRFTKIDKKVYGEIKGITDKEYYTNSFHVPVYYNISAYDKIEIEAPYHELTNAGHITYVELDGDPSDNLEAFETVIKAMKDLGIGYGSINHPVDRDPICGFSGVITSNICPVCGRNEDESDIKFERIRRITGYLVGTVDRFNNAKKAEVRDRVKHR
>CP012309.1|AXU70191.1|141759_142944_-|aspartate-aminotransferase
MLSKRLNFITPSYTIGISSKVKEMESNGVKVINLSIGEPDFNVPNNAKSYGIDSLNKDYTKYDLVPGLKILREEICKKLIEENNCNYSIDEIVVSSGAKNSITNTLLALTDEGDEVLLPKPYWVSYPEMIKLVNAVPVFIDTKKENGFKLTKEELEKSITDKTKILVINNPSNPTGSVYTKDELIEIVDICIQNKIYILADEIYEKICYTGEFTSIASLSEEAKDITITINGFSKSAAMTGLRLGYTASNKTIAKAMSSIQGHLISHPSLTAQYIAYGALKDCSIDIDNMVKTYKSRRDLIKSKLDSIDNVGYVNPNGAFYIFIDLSKVSEKFEYKDSFSIEFCNQFLEEYNVAVVPGIAFGMDKYIRISYACSENTFLSGLDKLKEFVYKIMA
>CP012309.1|AXU70190.1|128411_129164_+|germination-specific-N-acetylmuramoyl-L-alanine-amidase
MEYYSVFISIHIQGDVVRKYIKHIIFSFAMICLVVVSIFEIKNISEDVIKYMPVTNKTIILDAGHGGIDPGALNKDKSTSEKDINLAITLKLRELIESSGGLVILTREDDSSLYKEENNKTTRQKYNENLKNRKEIISNSNANMFVSIHLNAFEQSKYYGAQTFYPKDKQDSKELSKCIQEELKRVVDKTNNREVKPRDDIYLLKENNIPSVLIECGFLSNEKECKLLTDETYQEKIAWAIYIGIQKYLS
>CP012309.1|AXU70189.1|127560_127953_+|30S-ribosomal-protein-S9
MANVQYYGTGRRKSSVARVRLVAGEGNILVNGRALENYFNYETLIRDVKQPLVLTGNENKYDVIVKVEGGGFTGQAGAIRHGISRALLKADLDLRPALKKEGFLTRDARMKERKKYGLKAARRAPQFSKR
>CP012309.1|AXU70188.1|127100_127532_+|50S-ribosomal-protein-L13
MKSYIAKPADVQRKWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKYYRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEHTHAAQNPEVLNFK
>CP012309.1|AXU70187.1|126249_126981_+|tRNA-pseudouridine-synthase-1
MRNIKIKIQYNGKNYCGWQKQPDSLGIQGTIERAIYDITKEETSLIGSGRTDSGVHAIGQIANFKINSGISIESIPMALNAKLPKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSKFRNPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMSSGSSVKDTVRTIYDIDISKKDDLITFEISGNGFLYNMVRIIVGTLVDMGRGRINEPFLDIIQSKTRSRCGHTAPAQGLFLKKVHY
>CP012309.1|AXU70186.1|125414_126218_+|ABC-transporter-permease
MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWPYIVVLLCLLAMIKLANIPVKYIVKGVKPLKWIILFTFLINIFFLPGDEIWSFGFLAITKQGLRQAIFMAIRLIFLVVGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMMTIALRFIPTLLDETDKIMKAQMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADELAMAMEARCYRGGHNRTKMRESVISRRDYMACVFQVVYLGAIIATRFIAI
>CP012309.1|AXU70185.1|124554_125421_+|cobalt-transporter-ATP-binding-subunit
MSIIVKNLTHIYNEGMPFASKALDDVSFEIKDRDFVGLIGHTGSGKSTLIQHLNGLLKPSSGEIFINDFNITDKNLNLTEIRKRVGVVFQYPEYQLFEETIDKDIAFGPSNLGLEESEIHNRVKASMEAVGLDYEGFKDKSPFELSGGQKRRVAIAGVIAMNPEVLILDEPTAGLDPGGRDEIFNLIKDLHEKKNMTIILSSHSMDDMAKLAKTLIVMNHGSVEFMGTPREVFKSNASKLKDIGLDIPQVLELALKLREKGFDISEDILTLEEAKQEILKVVRGRGLC
>CP012309.1|AXU70184.1|123733_124567_+|ABC-transporter-ATP-binding-protein
MDNIVKVNNISFEYITDEAKLKAIDNLSLDVKKGEFVAIIGHNGSGKSTLSKNLNAILMPTEGNILIDDMDTKEEERLWDIRQTAGMVFQNPDNQIVATIVEEDVAFGPENLGIEPKEIRRIVEESLKSVGMYDLRDRQPHLLSGGQKQRVAIAGIIAMRPKCIIFDEATAMLDPSGRKEVMKTIKRLNKEENITVIHITHFMEEAVEADRVVVMEKGKKILEGTPREVFSKIKMLKEIGLDVPCMTELSSLLIEEGINISSDILTVDEMVMELCQL
>CP012309.1|AXU70194.1|159360_160200_+|DNA-integrity-scanning-protein-DisA
MLDINSFLNGFFNIILRMSIYDLIDISIVAYIFYKIFMFIKDTRAEQVFKGIIFLLLATQLSNTFKLHTVYWISLKALDYGVIAALIIFQPEFRAGLEHIGRAKFNLFGKNVNTSEETLNRNIEEIVEALYSLSRQKIGALIIMERETRISDIINTGTIIDAEISRQLLINIFIPNTPLHDGAVVIRDSKVKAAACFLPLTESKDLSKDLGTRHRAGIGVSEVSDCITLIVSEETGGVSIAKAGKLYRDISRERMMNILRSNLKTNTETRSFFKGGIFK
>CP012309.1|AXU70195.1|160196_161378_+|membrane-associated-protein
MINRLKNNTKIKIISFLSAIALWMYVMAVVDPEETKGFEDIPVSISNMSDLKDKNLVIYPDEKLTADVYIKGSLSKVQSVKKEDIHVYGTIEDPIQGQKEVYLKANIPQGVTLEFKHDVLVVNLEKNIKEKRDIKVEVSGNSKRNINKIELSKEFVDVSGPRTLVKEVKSVRANLDVGNETDDFSKKLQLIPLNSDGTKVEGVTLSSSFVTAKIELLKEKIVPIRVSLNDNKDNDVLKNYKLSKEQVTIKGKKEDIDKISYIKTKPIDLADLANGEEKEVSLEIPEGITLEDSSITIKLNDTKQLSAEFLYNAGDIELRNIPTNMDNPNVISDVDIKVVVESTEDLSKLNKKDISLYIDLSQGPEEDSKYKIKYETTYQFKKINIEPNIVEVE
>CP012309.1|AXU70196.1|161681_162584_+|phosphate-butyryltransferase
MRSFEEVIKFAKERGPKTISVACCQDKEVLMAVEMARKEKIANAILVGDIEKTKEIAKSIDMDIENYELIDIKDLAEASLKSVELVSQGKADMVMKGLVDTSIILKAVLNKEVGLRTGNVLSHVAVFDVEGYDRLFFVTDAAMNLAPDTNTKKQIIENACTVAHSLDISEPKVAAICAKEKVNPKMKDTVEAKELEEMYERGEIKGCMVGGPFAIDNAVSLEAAKHKGINHPVAGRADILLAPDIEGGNILYKALVFFSKSKNAGVIVGAKAPIILTSRADSEETKLNSIALGVLMAAKA
>CP012309.1|AXU70197.1|162605_163685_+|butyrate-kinase
MSKIFKILTINPGSTSTKIAVFDNEDLVFEKTLRHSSEEIGKYEKVSDQFEFRKQVIEEALKEGGVKTSELDAVVGRGGLLKPIKGGTYSVSAAMIEDLKVGVLGEHASNLGGIIAKQIGEEVNVPSYIVDPVVVDELEDVARISGMPEISRASVVHALNQKAIARRYAREINKKYEDINLIVAHMGGGVSVGAHKNGKIVDVANALDGEGPFSPERSGGLPVGALVKMCFSGKYTQDEIKKKIKGNGGLVAYLNTNDAREVEERIEAGDEKAKLVYEAMAYQISKEIGASAAVLKGDVKAILLTGGIAYSKMFTEMIADRVKFIADVKVYPGEDEMIALAQGGLRVLTGEEEAQVYDN
>CP012309.1|AXU70198.1|163674_164352_+|ATP/GTP-binding-protein
MITNDKRIRIITGHYGSGKSEFAMNYVVKLRDMVSGKVAIADLDVVNVYFRTREKKELMKSLGIQPIDSSINAPTLDLPAVSAEVMSPMVDHSYNSVIDLGGDNVGARVIGRFSHLLKEGDYDMLFVINANREKTQTSEEVIQYIKEIEKSSKLKVTGLINNTHLIRFTTIDDVLRGQKVAKEVSEKCNIPIRYVACLENLVEQLPKDLEGEIFPIKLYMREDWM
>CP012309.1|AXU70199.1|164394_164610_+|ferredoxin
MAKGKVSFNQERCKGCGLCVEACPVKIIQLDSNVINKKGYNPATVFEMEKCIGCASCATMCPDVVITVERD
>CP012309.1|AXU70200.1|164638_165718_+|2-ketoisovalerate-ferredoxin-reductase
MAKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELPKIGGAFVQAESEVSAINMVYGGAGAGARVMTSSSSPGVALKQEGITYAVGAEVPCVVLNVMRGGPGLGSIQPSQADYFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYYRSPVMVVADGMIGQMMEPVEFRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEVLEDHCWHLQEKFDAMEKNEVQYEMYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKAGLIRPKVLWPFPFEAFNQIPNARNILTVEMSMGQMVEDVKMAVEGKLPVYFHGRPGGMTPTPAEIVEKAKKIIAGELVAGGAR
>CP012309.1|AXU70201.1|165717_166470_+|subunit-of-oxidoreductase
MAVVFKKTEGLQDTQTHYCPGCTHGIIHRLVGEVLEELGVLGDAVGVVPVGCSVLGYKYFNCDTQEAAHGRAPAAATGIKRVHPENTVFTYQGDGDLASIGTAEIVHAAARGEKITTIFVNNTTYGMTGGQMAPTTLVGQRATTAQSGRNAETQGYPIRVSEMLATLTGAVFVERVAVDTPAHVRQAKKAIKKAFQVQQAGLGFGIVEVLSTCPTNWGLAPNDALQWLRDNMIPYYPLGNFKNVEVEEVK
>CP012309.1|AXU70202.1|166470_167028_+|subunit-of-oxidoreductase
MSTARVICAGFGGQGVMSMGQLLTYAGMLEGKEVSWLPSYGPEMRGGTANCAVTVSNEPVGSPLITDDATAAILLNIPAFEKFKDDVIPGGKIIVNSSLIKEKVDRTDVDVYYIPANELAAELGNDKVANMIMLGAYLKVSDTVDIESVLEAFKKVFGPRKEKFVPLNREALQKGMDATCSKATN
>CP012309.1|AXU70203.1|167197_168544_+|phosphoglucomutase/phosphomannomutase-mutase
MRKYFGTDGVRGVANTELTCDLAYKLGRAGGFVLAQGDHRVKVVVGKDTRISGDMLEASLIAGLMSVGCDVITVGIIPTPAVAYLTRKYGADCGVVISASHNPVEYNGIKFFNKNGYKLDDEIELKIEEYIDDIDKIDCLPIGENVGRKLHEHCAQRDYVDYLKSIISTDFKGLKVVLDCANGASYKVAPIVFDELGASVISINSSPDGNNINYKCGSTHPEQLQRAVLEHNADLGLAYDGDADRLIAVNEKGQIVDGDHIMILSALNLKKNNKLAQDTLVVTVMSNIGLTIAAKENGINLSTTAVGDRYVLEDMVKNGYNLGGEQSGHMIFLDYNTTGDGVLSSLILANIILQEKKPLSEIASIMSQYPQVLVNATIKNENKNKYMEYPEIKTEIERIESILDGNGRVLIRPSGTEPLVRVMLEGKEEGQIKELATNLANLIQEKLS

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Crispr_ID: CP012309_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_4

154239-154323

Orphan

Consensus_repeat	Method
TGTGTGTTAGCACTTTAAGCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP012309_4

>merge|CP012309|4|154239-154323|CRISPRCasFinder
TGTGTGTTAGCACTTTAAGCAACAGAATAAACTGAACGCATGTGAAGTTTGTTTGTTGGCGCTGTGCGTTAGCACTTTAAGCAAC

>CP012309|4|4|154239-154323|CRISPRCasFinder
TGTGTGTTAGCACTTTAAGCAAC	AGAATAAACTGAACGCATGTGAAGTTTGTTTGTTGGCGC
TGTGCGTTAGCACTTTAAGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU70199.1\|164394_164610_+\|ferredoxin	unknown	unknown	gnl\|CDD\|225131
CP012309.1\|AXU70188.1\|127100_127532_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP012309.1\|AXU70191.1\|141759_142944_-\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|235596
CP012309.1\|AXU70196.1\|161681_162584_+\|phosphate-butyryltransferase	unknown	unknown	gnl\|CDD\|180267
CP012309.1\|AXU70184.1\|123733_124567_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|275313
CP012309.1\|AXU70189.1\|127560_127953_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP012309.1\|AXU70202.1\|166470_167028_+\|subunit-of-oxidoreductase	unknown	unknown	gnl\|CDD\|376567
CP012309.1\|AXU70195.1\|160196_161378_+\|membrane-associated-protein	unknown	unknown	gnl\|CDD\|227193
CP012309.1\|AXU70193.1\|145689_146229_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274161
CP012309.1\|AXU70187.1\|126249_126981_+\|tRNA-pseudouridine-synthase-1	unknown	unknown	gnl\|CDD\|234577
CP012309.1\|AXU70194.1\|159360_160200_+\|DNA-integrity-scanning-protein-DisA	unknown	unknown	gnl\|CDD\|224539
CP012309.1\|AXU70186.1\|125414_126218_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223692
CP012309.1\|AXU70200.1\|164638_165718_+\|2-ketoisovalerate-ferredoxin-reductase	unknown	unknown	gnl\|CDD\|235942
CP012309.1\|AXU70198.1\|163674_164352_+\|ATP/GTP-binding-protein	unknown	unknown	unknown
CP012309.1\|AXU70197.1\|162605_163685_+\|butyrate-kinase	unknown	unknown	gnl\|CDD\|235099
CP012309.1\|AXU70185.1\|124554_125421_+\|cobalt-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|237455
CP012309.1\|AXU70201.1\|165717_166470_+\|subunit-of-oxidoreductase	unknown	unknown	gnl\|CDD\|239470
CP012309.1\|AXU70203.1\|167197_168544_+\|phosphoglucomutase/phosphomannomutase-mutase	unknown	unknown	gnl\|CDD\|237670
CP012309.1\|AXU70190.1\|128411_129164_+\|germination-specific-N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|274337
CP012309.1\|AXU70192.1\|143316_145668_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|235937

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU70199.1\|164394_164610_+\|ferredoxin	gnl\|CDD\|225131	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion].	6.6539e-10
CP012309.1\|AXU70188.1\|127100_127532_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.05591e-98
CP012309.1\|AXU70191.1\|141759_142944_-\|aspartate-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	6.23418e-180
CP012309.1\|AXU70196.1\|161681_162584_+\|phosphate-butyryltransferase	gnl\|CDD\|180267	PRK05805, PRK05805, phosphate butyryltransferase; Validated.	1.26101e-179
CP012309.1\|AXU70184.1\|123733_124567_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|275313	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	2.34653e-173
CP012309.1\|AXU70189.1\|127560_127953_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	3.31674e-84
CP012309.1\|AXU70202.1\|166470_167028_+\|subunit-of-oxidoreductase	gnl\|CDD\|376567	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase. This family includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyzes the final step in the fermentation of carbohydrates in anaerobic microorganisms. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.	1.49735e-43
CP012309.1\|AXU70195.1\|160196_161378_+\|membrane-associated-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	1.22215e-23
CP012309.1\|AXU70193.1\|145689_146229_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274161	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism, Protein fate, Protein modification and repair].	3.78376e-50
CP012309.1\|AXU70187.1\|126249_126981_+\|tRNA-pseudouridine-synthase-1	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	6.63504e-129
CP012309.1\|AXU70194.1\|159360_160200_+\|DNA-integrity-scanning-protein-DisA	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	1.4029e-80
CP012309.1\|AXU70186.1\|125414_126218_+\|ABC-transporter-permease	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.3503e-50
CP012309.1\|AXU70200.1\|164638_165718_+\|2-ketoisovalerate-ferredoxin-reductase	gnl\|CDD\|235942	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated.	0
CP012309.1\|AXU70197.1\|162605_163685_+\|butyrate-kinase	gnl\|CDD\|235099	PRK03011, PRK03011, butyrate kinase; Provisional.	0
CP012309.1\|AXU70185.1\|124554_125421_+\|cobalt-transporter-ATP-binding-subunit	gnl\|CDD\|237455	PRK13637, cbiO, energy-coupling factor transporter ATPase.	0
CP012309.1\|AXU70201.1\|165717_166470_+\|subunit-of-oxidoreductase	gnl\|CDD\|239470	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.	1.15077e-77
CP012309.1\|AXU70203.1\|167197_168544_+\|phosphoglucomutase/phosphomannomutase-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
CP012309.1\|AXU70190.1\|128411_129164_+\|germination-specific-N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|274337	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Sporulation and germination].	2.38976e-78
CP012309.1\|AXU70192.1\|143316_145668_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|235937	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional.	0

>CP012309.1|AXU70193.1|145689_146229_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MKIRMSSTISYDSIVDGPGLRMVIWTQGCIHNCKECHNPQTHDLCGGFYMDTEEIINKVKSLKLQKGITLSGGEPFLQPEPLEEIAREAKINGLDVWSYTGFTFEQLLDKKNRAYFKNLNLLKQIDILVDGKFIAEKKDISLKFRGSSNQRIIDVQKSLKYKKVFLVEQYMKDDLSIAE
>CP012309.1|AXU70192.1|143316_145668_+|anaerobic-ribonucleoside-triphosphate-reductase
MVEFVKKRDGRVIPFNEDRITRAIFLAATNVAEREGIVPDYKLSEQLTQEVIKFLNHKYSESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAEDADIKRENANINGNTAMGTMLQYGSTVSKEFCKTHILKPEHSFAHDNGDIHIHDMDFLNMGTLTCCQIDVKKLFNGGFSTGHGFLREPQDIISYGALAAIAIQSNQNDQHGGQSIPFFDYGLAEGVYKTFKKFYIGNLAKALKLFKGIENNDVIKNIVYNTEKETNQKVGLKRDELYLNLEKEKLIQTFDIDDELVNKMQNFAFEESYRETDKKTYQSMEAFIHNLNTMHSRAGAQVPFSSVNFGTDTSEEGRMVTKNLLLSQERGLGNGETPIFPILIFKVKEGINLNPKDPNYDLFKLSCRVSAKRLFPNFSFLDAPFNAKYYKKGEPDTEATYMGCRTRVLSNVCGSETVSGRGNISFTTVNLPRLGIKHGIINNEKANLDGFFEELDEKINLIIEQLLERLEVQGNKKMKNFPFLMGQGVWKGSDDLGPEDTLKEVIKQGTLTIGFIGLAECLIALIGKHHGESKEAQELGLKIVSHMRHKMDEATDKYKLNFSLMGTPAEGLSGRFTKIDKKVYGEIKGITDKEYYTNSFHVPVYYNISAYDKIEIEAPYHELTNAGHITYVELDGDPSDNLEAFETVIKAMKDLGIGYGSINHPVDRDPICGFSGVITSNICPVCGRNEDESDIKFERIRRITGYLVGTVDRFNNAKKAEVRDRVKHR
>CP012309.1|AXU70191.1|141759_142944_-|aspartate-aminotransferase
MLSKRLNFITPSYTIGISSKVKEMESNGVKVINLSIGEPDFNVPNNAKSYGIDSLNKDYTKYDLVPGLKILREEICKKLIEENNCNYSIDEIVVSSGAKNSITNTLLALTDEGDEVLLPKPYWVSYPEMIKLVNAVPVFIDTKKENGFKLTKEELEKSITDKTKILVINNPSNPTGSVYTKDELIEIVDICIQNKIYILADEIYEKICYTGEFTSIASLSEEAKDITITINGFSKSAAMTGLRLGYTASNKTIAKAMSSIQGHLISHPSLTAQYIAYGALKDCSIDIDNMVKTYKSRRDLIKSKLDSIDNVGYVNPNGAFYIFIDLSKVSEKFEYKDSFSIEFCNQFLEEYNVAVVPGIAFGMDKYIRISYACSENTFLSGLDKLKEFVYKIMA
>CP012309.1|AXU70190.1|128411_129164_+|germination-specific-N-acetylmuramoyl-L-alanine-amidase
MEYYSVFISIHIQGDVVRKYIKHIIFSFAMICLVVVSIFEIKNISEDVIKYMPVTNKTIILDAGHGGIDPGALNKDKSTSEKDINLAITLKLRELIESSGGLVILTREDDSSLYKEENNKTTRQKYNENLKNRKEIISNSNANMFVSIHLNAFEQSKYYGAQTFYPKDKQDSKELSKCIQEELKRVVDKTNNREVKPRDDIYLLKENNIPSVLIECGFLSNEKECKLLTDETYQEKIAWAIYIGIQKYLS
>CP012309.1|AXU70189.1|127560_127953_+|30S-ribosomal-protein-S9
MANVQYYGTGRRKSSVARVRLVAGEGNILVNGRALENYFNYETLIRDVKQPLVLTGNENKYDVIVKVEGGGFTGQAGAIRHGISRALLKADLDLRPALKKEGFLTRDARMKERKKYGLKAARRAPQFSKR
>CP012309.1|AXU70188.1|127100_127532_+|50S-ribosomal-protein-L13
MKSYIAKPADVQRKWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKYYRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEHTHAAQNPEVLNFK
>CP012309.1|AXU70187.1|126249_126981_+|tRNA-pseudouridine-synthase-1
MRNIKIKIQYNGKNYCGWQKQPDSLGIQGTIERAIYDITKEETSLIGSGRTDSGVHAIGQIANFKINSGISIESIPMALNAKLPKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSKFRNPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMSSGSSVKDTVRTIYDIDISKKDDLITFEISGNGFLYNMVRIIVGTLVDMGRGRINEPFLDIIQSKTRSRCGHTAPAQGLFLKKVHY
>CP012309.1|AXU70186.1|125414_126218_+|ABC-transporter-permease
MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWPYIVVLLCLLAMIKLANIPVKYIVKGVKPLKWIILFTFLINIFFLPGDEIWSFGFLAITKQGLRQAIFMAIRLIFLVVGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMMTIALRFIPTLLDETDKIMKAQMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADELAMAMEARCYRGGHNRTKMRESVISRRDYMACVFQVVYLGAIIATRFIAI
>CP012309.1|AXU70185.1|124554_125421_+|cobalt-transporter-ATP-binding-subunit
MSIIVKNLTHIYNEGMPFASKALDDVSFEIKDRDFVGLIGHTGSGKSTLIQHLNGLLKPSSGEIFINDFNITDKNLNLTEIRKRVGVVFQYPEYQLFEETIDKDIAFGPSNLGLEESEIHNRVKASMEAVGLDYEGFKDKSPFELSGGQKRRVAIAGVIAMNPEVLILDEPTAGLDPGGRDEIFNLIKDLHEKKNMTIILSSHSMDDMAKLAKTLIVMNHGSVEFMGTPREVFKSNASKLKDIGLDIPQVLELALKLREKGFDISEDILTLEEAKQEILKVVRGRGLC
>CP012309.1|AXU70184.1|123733_124567_+|ABC-transporter-ATP-binding-protein
MDNIVKVNNISFEYITDEAKLKAIDNLSLDVKKGEFVAIIGHNGSGKSTLSKNLNAILMPTEGNILIDDMDTKEEERLWDIRQTAGMVFQNPDNQIVATIVEEDVAFGPENLGIEPKEIRRIVEESLKSVGMYDLRDRQPHLLSGGQKQRVAIAGIIAMRPKCIIFDEATAMLDPSGRKEVMKTIKRLNKEENITVIHITHFMEEAVEADRVVVMEKGKKILEGTPREVFSKIKMLKEIGLDVPCMTELSSLLIEEGINISSDILTVDEMVMELCQL
>CP012309.1|AXU70194.1|159360_160200_+|DNA-integrity-scanning-protein-DisA
MLDINSFLNGFFNIILRMSIYDLIDISIVAYIFYKIFMFIKDTRAEQVFKGIIFLLLATQLSNTFKLHTVYWISLKALDYGVIAALIIFQPEFRAGLEHIGRAKFNLFGKNVNTSEETLNRNIEEIVEALYSLSRQKIGALIIMERETRISDIINTGTIIDAEISRQLLINIFIPNTPLHDGAVVIRDSKVKAAACFLPLTESKDLSKDLGTRHRAGIGVSEVSDCITLIVSEETGGVSIAKAGKLYRDISRERMMNILRSNLKTNTETRSFFKGGIFK
>CP012309.1|AXU70195.1|160196_161378_+|membrane-associated-protein
MINRLKNNTKIKIISFLSAIALWMYVMAVVDPEETKGFEDIPVSISNMSDLKDKNLVIYPDEKLTADVYIKGSLSKVQSVKKEDIHVYGTIEDPIQGQKEVYLKANIPQGVTLEFKHDVLVVNLEKNIKEKRDIKVEVSGNSKRNINKIELSKEFVDVSGPRTLVKEVKSVRANLDVGNETDDFSKKLQLIPLNSDGTKVEGVTLSSSFVTAKIELLKEKIVPIRVSLNDNKDNDVLKNYKLSKEQVTIKGKKEDIDKISYIKTKPIDLADLANGEEKEVSLEIPEGITLEDSSITIKLNDTKQLSAEFLYNAGDIELRNIPTNMDNPNVISDVDIKVVVESTEDLSKLNKKDISLYIDLSQGPEEDSKYKIKYETTYQFKKINIEPNIVEVE
>CP012309.1|AXU70196.1|161681_162584_+|phosphate-butyryltransferase
MRSFEEVIKFAKERGPKTISVACCQDKEVLMAVEMARKEKIANAILVGDIEKTKEIAKSIDMDIENYELIDIKDLAEASLKSVELVSQGKADMVMKGLVDTSIILKAVLNKEVGLRTGNVLSHVAVFDVEGYDRLFFVTDAAMNLAPDTNTKKQIIENACTVAHSLDISEPKVAAICAKEKVNPKMKDTVEAKELEEMYERGEIKGCMVGGPFAIDNAVSLEAAKHKGINHPVAGRADILLAPDIEGGNILYKALVFFSKSKNAGVIVGAKAPIILTSRADSEETKLNSIALGVLMAAKA
>CP012309.1|AXU70197.1|162605_163685_+|butyrate-kinase
MSKIFKILTINPGSTSTKIAVFDNEDLVFEKTLRHSSEEIGKYEKVSDQFEFRKQVIEEALKEGGVKTSELDAVVGRGGLLKPIKGGTYSVSAAMIEDLKVGVLGEHASNLGGIIAKQIGEEVNVPSYIVDPVVVDELEDVARISGMPEISRASVVHALNQKAIARRYAREINKKYEDINLIVAHMGGGVSVGAHKNGKIVDVANALDGEGPFSPERSGGLPVGALVKMCFSGKYTQDEIKKKIKGNGGLVAYLNTNDAREVEERIEAGDEKAKLVYEAMAYQISKEIGASAAVLKGDVKAILLTGGIAYSKMFTEMIADRVKFIADVKVYPGEDEMIALAQGGLRVLTGEEEAQVYDN
>CP012309.1|AXU70198.1|163674_164352_+|ATP/GTP-binding-protein
MITNDKRIRIITGHYGSGKSEFAMNYVVKLRDMVSGKVAIADLDVVNVYFRTREKKELMKSLGIQPIDSSINAPTLDLPAVSAEVMSPMVDHSYNSVIDLGGDNVGARVIGRFSHLLKEGDYDMLFVINANREKTQTSEEVIQYIKEIEKSSKLKVTGLINNTHLIRFTTIDDVLRGQKVAKEVSEKCNIPIRYVACLENLVEQLPKDLEGEIFPIKLYMREDWM
>CP012309.1|AXU70199.1|164394_164610_+|ferredoxin
MAKGKVSFNQERCKGCGLCVEACPVKIIQLDSNVINKKGYNPATVFEMEKCIGCASCATMCPDVVITVERD
>CP012309.1|AXU70200.1|164638_165718_+|2-ketoisovalerate-ferredoxin-reductase
MAKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELPKIGGAFVQAESEVSAINMVYGGAGAGARVMTSSSSPGVALKQEGITYAVGAEVPCVVLNVMRGGPGLGSIQPSQADYFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYYRSPVMVVADGMIGQMMEPVEFRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEVLEDHCWHLQEKFDAMEKNEVQYEMYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKAGLIRPKVLWPFPFEAFNQIPNARNILTVEMSMGQMVEDVKMAVEGKLPVYFHGRPGGMTPTPAEIVEKAKKIIAGELVAGGAR
>CP012309.1|AXU70201.1|165717_166470_+|subunit-of-oxidoreductase
MAVVFKKTEGLQDTQTHYCPGCTHGIIHRLVGEVLEELGVLGDAVGVVPVGCSVLGYKYFNCDTQEAAHGRAPAAATGIKRVHPENTVFTYQGDGDLASIGTAEIVHAAARGEKITTIFVNNTTYGMTGGQMAPTTLVGQRATTAQSGRNAETQGYPIRVSEMLATLTGAVFVERVAVDTPAHVRQAKKAIKKAFQVQQAGLGFGIVEVLSTCPTNWGLAPNDALQWLRDNMIPYYPLGNFKNVEVEEVK
>CP012309.1|AXU70202.1|166470_167028_+|subunit-of-oxidoreductase
MSTARVICAGFGGQGVMSMGQLLTYAGMLEGKEVSWLPSYGPEMRGGTANCAVTVSNEPVGSPLITDDATAAILLNIPAFEKFKDDVIPGGKIIVNSSLIKEKVDRTDVDVYYIPANELAAELGNDKVANMIMLGAYLKVSDTVDIESVLEAFKKVFGPRKEKFVPLNREALQKGMDATCSKATN
>CP012309.1|AXU70203.1|167197_168544_+|phosphoglucomutase/phosphomannomutase-mutase
MRKYFGTDGVRGVANTELTCDLAYKLGRAGGFVLAQGDHRVKVVVGKDTRISGDMLEASLIAGLMSVGCDVITVGIIPTPAVAYLTRKYGADCGVVISASHNPVEYNGIKFFNKNGYKLDDEIELKIEEYIDDIDKIDCLPIGENVGRKLHEHCAQRDYVDYLKSIISTDFKGLKVVLDCANGASYKVAPIVFDELGASVISINSSPDGNNINYKCGSTHPEQLQRAVLEHNADLGLAYDGDADRLIAVNEKGQIVDGDHIMILSALNLKKNNKLAQDTLVVTVMSNIGLTIAAKENGINLSTTAVGDRYVLEDMVKNGYNLGGEQSGHMIFLDYNTTGDGVLSSLILANIILQEKKPLSEIASIMSQYPQVLVNATIKNENKNKYMEYPEIKTEIERIESILDGNGRVLIRPSGTEPLVRVMLEGKEEGQIKELATNLANLIQEKLS

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Crispr_ID: CP012309_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_5

572206-572530

Orphan

Consensus_repeat	Method
GATAATAAGTGNAATTGATATAG	CRT

6 spacers

WYL

The CRISPR arrays of CP012309_5

>merge|CP012309|5|572206-572530|CRT
GATAATAAGTGAATTGATATAGAAATAAGTAAATTAAGTAAGATGATAACAAATGAGATGATAATAAGTGAATTGACATAGCAATAAGTAAATTGAGTAAGACGATAATAAGTGAATTGATATAGAAATAAGTAAGTTAAGTAAGATGATAACAAATGAGATAATAAGTGAATTGATATAGCAATAAGTAAGTTAAATAAGATGATAATAAGTGGAATTGATATAGCAATAAGTAAATTAAGTAAGACGATAACAAATGAGATGATAATAAGTAAATTGATATAGTAATAAATAAATTAAGATGATAATATCCAAAGTGAGAAAG

>CP012309|5|1|572206-572530|CRT
GATAATAAGTGAATTGATATAG	AAATAAGTAAATTAAGTAAGATGATAACAAATGAGAT
GATAATAAGTGAATTGACATAG	CAATAAGTAAATTGAGTAAGAC
GATAATAAGTGAATTGATATAG	AAATAAGTAAGTTAAGTAAGATGATAACAAATGA
GATAATAAGTGAATTGATATAG	CAATAAGTAAGTTAAATAAGAT
GATAATAAGTGGAATTGATATA	GCAATAAGTAAATTAAGTAAGACGATAACAAATGAGAT
GATAATAAGTAAATTGATATAG	TAATAAATAAATTAAGAT
GATAATATCCAAAGTGAGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU70545.1\|568098_568845_-\|metallo-beta-lactamase-superfamily-hydrolase	unknown	unknown	gnl\|CDD\|293807
CP012309.1\|AXU70558.1\|582268_582709_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|238374
CP012309.1\|AXU70549.1\|572655_573567_+\|DeoR-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP012309.1\|AXU70541.1\|560336_563435_+\|signaling-protein	unknown	unknown	gnl\|CDD\|238923
CP012309.1\|AXU70553.1\|576022_576508_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|319352
CP012309.1\|AXU70542.1\|563557_564844_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|285436
CP012309.1\|AXU70539.1\|558462_559167_+\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP012309.1\|AXU70557.1\|580123_582256_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|223716
CP012309.1\|AXU70552.1\|575504_576026_+\|chemotaxis-protein-CheC	unknown	unknown	gnl\|CDD\|381737
CP012309.1\|AXU70554.1\|576550_577069_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|223905
CP012309.1\|AXU70550.1\|573741_574239_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379638
CP012309.1\|AXU70551.1\|574981_575344_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|381097
CP012309.1\|AXU70544.1\|566195_567737_-\|aminobenzoyl-glutamate-transport-protein	unknown	unknown	gnl\|CDD\|225525
CP012309.1\|AXU70556.1\|578189_579893_+\|methyl-accpeting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
CP012309.1\|AXU70540.1\|559453_559612_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU70547.1\|570379_570850_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU70555.1\|577204_578164_+\|chemosensory-protein	unknown	unknown	gnl\|CDD\|226229
CP012309.1\|AXU70543.1\|565054_566161_-\|peptidase	unknown	unknown	gnl\|CDD\|349932
CP012309.1\|AXU70548.1\|570853_571705_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378631
CP012309.1\|AXU70546.1\|569056_570367_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349947

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU70545.1\|568098_568845_-\|metallo-beta-lactamase-superfamily-hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.19452e-35
CP012309.1\|AXU70558.1\|582268_582709_+\|chemotaxis-protein	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	1.13916e-29
CP012309.1\|AXU70549.1\|572655_573567_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.56864e-73
CP012309.1\|AXU70541.1\|560336_563435_+\|signaling-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.58055e-83
CP012309.1\|AXU70553.1\|576022_576508_+\|chemotaxis-protein	gnl\|CDD\|319352	cd16352, CheD, chemotaxis protein CheD stimulates methylation of methyl-accepting chemotaxis proteins. This family contains bacterial chemotaxis protein CheD that stimulates methylation of methyl-accepting chemotaxis proteins (MCPs). The CheD chemotaxis gene is not found in the Escherichia coli genome, but is present in many other organisms, including B. subtilis, where CheD appears to have two separate roles; it binds to chemoreceptors to activate them as part of the CheC/CheD/CheYp adaptation system, and it deamidates selected residues to activate chemoreceptors, enabling them to mediate amino acid chemotaxis. CheD has been shown to catalyze amide hydrolysis of specific glutaminyl side chains of the B. subtilis chemoreceptors McpA, McpB and McpC; deamination by CheD is required for the chemoreceptors to effectively transduce signals to the CheA kinase. CheD's ability to bind the receptors is controlled by CheC via a competitive binding mechanism; substituting Gln into the receptor motif of the signal-terminating phosphatase, CheC, turns the inhibitor into a receptor-modifying deamidase CheD substrate. Also, CheYp increases the affinity of CheD for CheC, controlling CheD binding to the receptors through its interactions with CheC. Thus, high levels of CheYp means CheC is a better binding target for CheD than the receptors, resulting in decreased CheA activity. The CheD structure reveals a distant homology with a class of bacterial toxins represented by the cytotoxic necrotizing factor 1 (CNF1) as well as a class of proteins of unknown function represented by B. subtilis YfiH. An invariant Cys-His pair forming a catalytic dyad is observed, and is required by the toxins for deamidation activity.	3.04555e-62
CP012309.1\|AXU70542.1\|563557_564844_+\|transcriptional-regulator	gnl\|CDD\|285436	pfam08220, HTH_DeoR, DeoR-like helix-turn-helix domain.	0.00341629
CP012309.1\|AXU70539.1\|558462_559167_+\|two-component-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.67798e-77
CP012309.1\|AXU70557.1\|580123_582256_+\|chemotaxis-protein	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	6.35333e-174
CP012309.1\|AXU70552.1\|575504_576026_+\|chemotaxis-protein-CheC	gnl\|CDD\|381737	cd17909, CheC_ClassI, chemotaxis protein CheC, Class I. This subfamily contains Class I CheC proteins with phosphatase activity. The Class I cheC genes are generally found in firmicute and archaeal chemotaxis operons with cheD, usually translationally coupled. Class I CheCs interact with the CheD protein which is responsible for deamidation of certain glutamine residues to glutamates on the chemotaxis receptor proteins. This family contains two active sites with the consensus sequence ([DS]xxxExxNx(22)P), with four conserved residues thought to form the phosphatase active site. The C-terminal helix of CheC acts as a mimic of the natural enzymatic target of CheD, the alpha-helical receptors, and serves as the binding site for CheD. The CheC/CheD heterodimerization increases CheY-P phosphatase activity five-fold. Class I CheCs are involved in adaptation of the chemotaxis system.	2.46986e-55
CP012309.1\|AXU70554.1\|576550_577069_+\|chemotaxis-protein	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	7.94338e-35
CP012309.1\|AXU70550.1\|573741_574239_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|379638	pfam14526, Cass2, Integron-associated effector binding protein. This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.	1.47682e-24
CP012309.1\|AXU70551.1\|574981_575344_+\|chemotaxis-protein	gnl\|CDD\|381097	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY. The chemotaxis response regulator CheY contains a stand-alone REC domain. Chemotaxis is a behavior known for motile bacteria that directs their movement in response to chemical gradients. CheY is involved in transmitting sensory signals from chemoreceptors to the flagellar motors. Phosphorylated CheY interacts with the flagella switch components FliM and FliY, which causes counterclockwise rotation of the flagella, resulting in smooth swimming. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.64917e-53
CP012309.1\|AXU70544.1\|566195_567737_-\|aminobenzoyl-glutamate-transport-protein	gnl\|CDD\|225525	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism].	0
CP012309.1\|AXU70556.1\|578189_579893_+\|methyl-accpeting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	9.35479e-52
CP012309.1\|AXU70543.1\|565054_566161_-\|peptidase	gnl\|CDD\|349932	cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically cleave tripeptides. Peptidase M20 family, PeptT (tripeptide aminopeptidase; tripeptidase)-like subfamily. This group includes bacterial tripeptidases as well as predicted tripeptidases. Peptidase T acts only on tripeptide substrates, and is thus called a tripeptidase. It catalyzes the release of N-terminal amino acids with hydrophobic side chains from tripeptides with high specificity; dipeptides, tetrapeptides or tripeptides with the N-terminus blocked are not cleaved. Tripeptidases are known to function at the final stage of proteolysis in lactococcal bacteria and release amino acids from tripeptides produced during the digestion of milk proteins such as casein.	1.25794e-130
CP012309.1\|AXU70555.1\|577204_578164_+\|chemosensory-protein	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.29248e-83
CP012309.1\|AXU70548.1\|570853_571705_-\|hypothetical-protein	gnl\|CDD\|378631	pfam11299, DUF3100, Protein of unknown function (DUF3100). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	5.5293e-112
CP012309.1\|AXU70546.1\|569056_570367_-\|amidohydrolase	gnl\|CDD\|349947	cd09849, M20_Acy1L2-like, M20 Peptidase aminoacylase 1-like protein 2, amidohydrolase family. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli , to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0

>CP012309.1|AXU70548.1|570853_571705_-|hypothetical-protein
MEINKKHFIQVFLTCLILVVICEFIGQRTIAIGKASIVLFPMLYAVIIGLIITPDLLGKKIKALKKVVGEKEINIAGEVVGIALVMLGIKYGTTVGPNIDKIIQAGPAFIAQEFGHILAPIVALPLALMFGMKREAVGATASISREPSLGVISEKYGINSPEGSGVLGTYLMGTVLGTIYFSVLGSISIYSGLHPYALGMACGVGSGSMMTAAAGSLSTMVPPEMADTILAYAATSNMMSSITGIIFLVFVSLPFTNFMYKILEPKFSRNKKTKEIKSTEGEC
>CP012309.1|AXU70547.1|570379_570850_-|hypothetical-protein
MFANLNLKKSSYQLLVMSVIGVIILIGQRISVGTSIVTALPGMVMLILAAMAAMIIKDLFPKSIFPAFGFATIIGLLLSMPYSPTSEVFLTNTNNINFMAITTPLLAFAGISVGNKIEALKEMSWKIVIISLIVFTTIFFACASIAHIVLSIQGKI
>CP012309.1|AXU70546.1|569056_570367_-|amidohydrolase
MNKEQLKSLVIKTIDENREKILKIGQGIYKNPEYGYKEFKTTEAVSNFFEQELNLSVEKNIAVTGCKADANSSKKGPHISILGELDGISCKEHKDANEIGASHTCGHNIQIAGMLGAAVGLVKSGVLEHLDGKVSFMATPAEEFIELEYREQLKKEGKITYFGGKQELIKRGYFDDIDISMMFHASDLGEDKALVGPESNGFVGKKVKFIGKESHAGSAPHDGINALNAAMLAINNVNALRETFKESERVRFHPIITKGGDIVNVVPADVHMESYVRARTINGMIDANERINKALMAGGMAVGADVEITEIPGYLPILRYKSLDNLFKNNLEDLGLKGKVIDGGDFTGSFDFGDVSHIMPTLHPMIGGVKGALHTRDFEIVDEDLAYIIPAKAMALTVVDLLFDNAKDAKDILDTFTPVMTKEEYLTFLEKHDKTL
>CP012309.1|AXU70545.1|568098_568845_-|metallo-beta-lactamase-superfamily-hydrolase
MFNAGNRIINTWLYPIQDGFVLIDTGYENGFKHFKKRISKFNIKIKDIRYIFLTHAHDDHVGFLNQILDESPNTKIVMHDKALEILYKGQNSFIGGCTSRTAFLFCQIMKLFGKGEHSFSPLKQEFEKRCILVSDKNRKEIEKELNGKIIDTPGHTADSISLLIYDGVLFCGDSAMNGFPSTHKITIFAESKLEFIQSWKTIINTKPKMIYPGHGKPFEYSKLEQNLIYVNKINLYPLHNSKDIHRFL
>CP012309.1|AXU70544.1|566195_567737_-|aminobenzoyl-glutamate-transport-protein
MNDNVVKKKNFFDRTLNRIETVGNKLPDPVTIFLGLCVLLLILSSLVGSMGISVVHPGTGETITAVNLLTVEQLQILLGNIVSNFQGFAPLGLVLVTMIGAGVCDKTGLMTATIKASVSKIPETRVTLVVMTIGMLANIASDAGTILFPPLAALVYLGVGRHPLIGLFSGYAAVCLGFAANIMISVNDILAASFTVPAAQMIDSGFQANATMNLFFMIASTFVLILLATWVTEKIVAPRFGKYEGNAELDVDGSLSDVEKKGLKKAGISILIYVAIIVALSVIGKKPFLADPETGDLLSNNAPLMKGMVPIIALAFFIPGVVYGKTIGKIKKDKDVVSIMASAMSDMGGYIILAFAASQFLQLFTNSNLGLILAVKGGEFLKSAGINGPLLLIGFIILSCFINLFIGSASAKWAILAPIFVPMFMMVGYNPALTQMAYRIGDCITNPLSPLFPYFPIILAFTRKYDKDAGMGTVIANMIPYSISFLIVWTILLILFMVFNIPLGPGILPSYSM
>CP012309.1|AXU70543.1|565054_566161_-|peptidase
MLDKNRLINNFMDMVRIDSPSNQELEMSKWLVNYLKERNIDAIIDDAGEKYGGNTGNVIAYIKGEEGSRPLCLCAHMDQVQPCLGVKPILDGNVVRSDGTTTLGADDKAGIAAILEALEHVITEKIPHRDIYLCFTICEEAGMHGVKNFNPDNLPCKDMVILDSGGAIGSIAYKAPAQQSIKISFHGKKAHAGIEPEKGLNAILVASHAISNMHIGRIDSLTTSNIGKIEGGGATNIVTDKVTLTAEIRSHIPETLEYELNHMEKCCKDAASKFNTTYTFEHNMSYPSFELSRDSHVFKLSEEAIRQVGIVPNPMVIGGGSDANILANLGYNCAILSLGMYDVHTVNEYVNIDELYDTAKIVYHMIKL
>CP012309.1|AXU70542.1|563557_564844_+|transcriptional-regulator
MIVGIIGPSDSGFKIKDDLKQIDSDLKTKIYVREKVVDTIEVISKCEDECDAIIFTGCAVYEFIKSKYEISKPHSFVPRSGTSIMKAFWAIKSANIKLDKFSIDVVDRYVVEDALKEFDIKATSVFCNPFSLEVGESELVEWHIKLFEENKTDIMLTGFGAVYNELKERGYPVFRLQATIQLIKESYDKVKSEYALSKARFSQIAVEILSLIDYKEKIDNYYSDMIKKSDMDKLVVNYVRSIQGSLFLLGRNDYVVFVHKGVADNEYNYDKLFNLKREIKDMGFSLSIGIGTGVTAYQAENNAHKALRHSIDSKEIGIYLVDEDENIRGPLASENELNYSLMLSDEKVIEISKKTGMSCESVAKIIAINENRKSKIYDSKELAEYLNVSERSARRILNKIVNAGLGRICAKETSIGGGRPKNITEILF
>CP012309.1|AXU70541.1|560336_563435_+|signaling-protein
MDVINLIDELDEIVYVSSLDTYELLYINEIGKKAMGLNDISHLKCYKALQGKDSPCEFCTNSILKEDEYYIWENTNTRTNRHFILKDKLIKWEGKHARLEIALDITEKEDISKSIAEKLEIKELLVGCIKHLITESNFSDAVNLVLTNIGKFHKADRAYVFEVSEDRTKVTNTYEWCNEGVDEQKQALTNLDINELKNWFLLFEQKGFVIIDDIENIKEEQPIEYEILKPQKIESLMTSSLKQDDKVVGFIGVDNPHKAVGDTSLLTSLSYFLLTEMKKRKVENKLNYMSYYDFLTGAYNRNKYIKYIDNFQKGKVKSIGVVFVDINGLKDINDNFGHANGDSAIVSACVIIKKYFHSYNVYRIGGDEFVVLCEDISKQLFEELVSWLSEEFKDEMIYSVAVGSIWSDDNIDIHKLIKVADERMYQDKKRYYNKNKLRNNEMKVISDLADSTNNILFKHKELVDKVYFDDLMIKGYSKAYEKLAYNTYDIILSICIDTNLITPIYQSESNIFSFPIKENLEKTFSYIKKHLIHPDDIILFNDNHLLKSLDSLNNSKQDDLELNFEYRRLGIDKKYYWALIYMLKISSKNKLGEKQTHILVAIKNIDYLMQLHKNQKDTLTGLYNYESFCEQISLMLKRYPDKRYAIIMMDIDKFKVINDIYGVRGGDKALIYVAELIQKNIGSNGICCRMYADVFCIFYESYSDRDIHKVIYKIKNSLNRKKFEYMLVPCFGVYRILDNHIPITNACEMAGYAHKKVKKQSINNYIFYDDTIRNDALEEKQMEREMEYALENGQFHVYLQPKYNLNANKIVGAEALVRWVHPEKGIIPPIKFISLFEKNGFIIRLDMYVWEQVCSLIRKWIDLGEEPVPISVNVSRLHLHNPHFKEIVLSLINKYSIPKSFLELELTESLFIKNIKLFTKIIADLRMDGIVLNMDDFGSAYSSLNMLKNINIDTLKIDCGFFNEEGITDREKIVLKHTIAMAKDLDMDVVAEGVETKEQAEFLVSLDCVVIQGYYYCKPIPSADFEKLLYQK
>CP012309.1|AXU70540.1|559453_559612_-|hypothetical-protein
MKIFSFLLFVIGICLCIAGFIGHYPVFVGTTLSFLAIAMIAVRQVKTKKKMK
>CP012309.1|AXU70539.1|558462_559167_+|two-component-response-regulator
MEIKPLVLIVEDDKPICKFIKVSLETQNYRCVETDNGGTAISLIHSLDPDLIILDLGLPDIDGIEVIGRVRACAKTNKIIVVSAREHERDKVEALDGGADDYLTKPFSVTELLARVRVALRNKAQQDNINNDAPKSFEVKNLKIDYENHIVSINGEEIHLTPIEYKIIELMSKYSGRVLTHKFIIDKVWGNYYESENQSLRVFMASIRRKIEKNPAQPEYILTEVGVGYRMADE
>CP012309.1|AXU70549.1|572655_573567_+|DeoR-family-transcriptional-regulator
MKINRLTEIIVILLNKKLVTAKELADRFEVSTRTIYRDIETLSMSGVPVYMTKGKGGGISLIEEYSIDKAILSKKDKESLIVALKTLQATKYPEINSVVNKIGSIFGEQNFSNWIEIDFTEWGSNFNEDDKFTKIKEAILRRNTINFNYVNSLSSQTNRTVEPLKLMYKSKTWYLYGFCKLKDDFRIFRISRIRNLSIKDEVFSRKIIEEVCLNDSKVIKENTITLKLRFKEKMLFRVFDDFNKDLITKNEDDTYDVITEFPIGEWIYGYILSFGDNVEVLEPKDVRDNVITRLRELSKIYSL
>CP012309.1|AXU70550.1|573741_574239_+|AraC-family-transcriptional-regulator
MNYEIVEINEKIVIGISKETTNKDGQAVNDIGELWKKFMGKGIYNAIKGKKNDKTIGLYTDYQGDFTSPYSFVACCEVNSNSDKEKNLEELNTNNTVGESIISKVIPAGKYAKFVIVGGQKEVGDFWFEFWQMDFDRTYISDFEEYQCNTFDTKKQEVHIYIGIK
>CP012309.1|AXU70551.1|574981_575344_+|chemotaxis-protein
MENKILIVDDAIFMRMIIKEALSKSGYNNLIEANDGEEACNIFKYEKPDLMLLDITMPKKDGLEVLREIKKLDSSAKVVMCSAIGQENMIVEAIKLGALDFIVKPFKTETLVKVVNNVLK
>CP012309.1|AXU70552.1|575504_576026_+|chemotaxis-protein-CheC
MINSNVEVLIPMVKILEYNEATNLLGGPENKVVCILLDMKGDINGMFMFLLDESITQLMLSSLFNKEEAFLDEIEAIEISAIKEIGNIMASSYVNAIASMLNMTISVSIPDICIDMVGAVLNVPMIRFSDVGDKVLFIENKFKMSDNYFTSHILMIPEMSSLREILVRLGLEV
>CP012309.1|AXU70553.1|576022_576508_+|chemotaxis-protein
MNREIVVNIADMKIAYRPNVLVTYALGSCVGVCLIDKVAGIGGMLHVMLPYSKDAINIENKCKFADTGINELIKSMENIGANRIYIKAKIAGGAQMFLGSSNSVIASIGHRNVEAVKKTLLGLNIPILAEDTGMNYGRTIRFYTETGELLVDSINKGKKKL
>CP012309.1|AXU70554.1|576550_577069_+|chemotaxis-protein
MRFPDDPYLDYGLIDEGIKYLKFKVDEQDFGVELEKVIEITGNQEIIFIPELPTYSKGIINLRGKIIPIIDMRLRLKKDELMTTNCMYIVVTEIKDLVVGFVVDRVDDIVSLEKSKISPPPRVTIEYSDYFVSGVGELEGKIITLLDLEKLLTDKDEVLIDELINGFDCTIM
>CP012309.1|AXU70555.1|577204_578164_+|chemosensory-protein
MKNKQQGTILVVDDSVLMCDLIDKTLTKDNFKVKKAFNAIEAKEFIEEFIPDIILLDIILPDNSGFEFCKEVKSNARTADIPIIFITSKNTDTDIVKGFGVGAIDYMVKPFSMTELKARVIAHLEVKKSQDKLKKINNELESSLEKLNRLVVRDYLTGLYNRRHIINQLMEQRRINKYSETSISLILGDIDDFKVINDTYGHEAGDFVLTVISSIIKKNCRQIDTVSRWGGEEFLIMLTNTPIEGAKILSERIRKEIKEFDFNYKEHKIKCTITLGVVEVNSNISLEENISLADKAMYEGKNLGKDCSVVSTMKGLKKI
>CP012309.1|AXU70556.1|578189_579893_+|methyl-accpeting-chemotaxis-protein
MKREVKLSKLAIVLLIIIVLAVLAGIFSSISSYKAFEKVEKSINDMNNLRTQSQYIKDTTREISDVLRRYVFTGEKKNKDIYEKELYGKTRESALNKLEKIGLTKSESNKILEAKEISDSLVPTEQSAIKAVESNDKSKAQSIIFGSDYINSQEKMDSLINEFQEDIVTRSNSKIVEVKKELQSLILRTIFILSLLIILTIIEYTVIKLKIVIPINKVEKHFSRIASGDLRTSIDVEESKSEIGLLVSSVKKMQSMLLNYIDLIDSTLTSIAKGDLRVEIDQEFIGDFKSIKISLESIINSFNGDFSEINLSAEQVASASEQVAAGAQALSQGATEQASSVEELASTINEISDGIKKCADSASLACEVSDQSASQVGFGSRCMDDMMTSMGEISEKSSEISKIIKTIDEIAFQTNILALNAAVEAARAGQYGRGFAVVADEVRSLAGKSAKAAQNTAILIEEAIKTVENGVRIAKETANALDLVVNGVEKTTNYINGISSAVHSQEVAITQILSGIEQISIVVQMNSATAEESAAASEEMSAQAQILKELVEKFHLKESEVRESSWV
>CP012309.1|AXU70557.1|580123_582256_+|chemotaxis-protein
MINVNYIEPSMRQMLDMFIFETSLLLEQLDEIMIQIEKEKVFTHNNINETFRIMHTIKGSASMMGLDNISALAHSVEDLFYAIREGKIEVLDNDLLFDLVFQSLDFIRRDIDELQSRGCISSDYSNFIEGIEEYVSTLELSSSMKSKDNANLESKDEKEVIDSNFEYKEDSDVVKIIFEQGCMMENVRAFMLVFELRDYCEFIDFYPKDVETNAESTEYIKSYGFYIQFVAKEDKAIVYKTIEDNLYVKEYINISKKEIEMKNTSNNDAVENKLKDNNKVSKSYQNNYTEDEIQEDVLNEKTDMEKDSLSEENEHLPISKQSIMSVNLEKLDLLQNIVGEIVIMESMVVNSVNSTGVDIDNFNKATRQLHKLTDELQDIVMSMRMIQIAGVFQKMHRIVRDMNKKLDKNVELITIGAETEVDKSVIDNLAEPFMHLIRNAMDHAIEPIEERIAKGKEEVGKIVLSAENLGGEAVISISDDGRGIMRDKILAKAKEQGLLKHQSNEYTDDEVNSLIMTPGFSTKESITEFSGRGVGMDIVRKSIEKVGGSIEVKSKQDEGTTFTIKIPLTLSIVEGMKFKVGDSLFTLPISSIRRTFKLTDLNQIITEGNKTELITIYGACIPIIRLHKIYNIQTKVTNLMNGNMIIIENEHKAVCIFVDEIIGNQQVVVKPFPVYFNRFNIKNKGLSGCTILGDGSISLIIDADSIIEIY
>CP012309.1|AXU70558.1|582268_582709_+|chemotaxis-protein
MAKDEIIKQVLTFYVNDVIYGIELENVIETIRFQSITYVPCLPTYISGVINLRGRIIPVINMHIKYNLPKADYNERTCIIITKVDEYQVGIIVDKVVDVIHIENLNLLETTNSNNTNINKDIKEIAKVEDNSILILDIRKFLINSI

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Crispr_ID: CP012309_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_6

1112547-1112635

Orphan

Consensus_repeat	Method
GTGCGTTAGCACTTTAAGTAACGGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP012309_6

>merge|CP012309|6|1112547-1112635|CRISPRCasFinder
GTGCGTTAGCACTTTAAGTAACGGAATAATCTGAGTGAATACGAAGGTTGTTCGTTGACGTGGTGCGTTAGCACTTTAAGCAACGGAAT

>CP012309|6|5|1112547-1112635|CRISPRCasFinder
GTGCGTTAGCACTTTAAGTAACGGAAT	AATCTGAGTGAATACGAAGGTTGTTCGTTGACGTG
GTGCGTTAGCACTTTAAGCAACGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU71003.1\|1129539_1133367_+\|ATP-dependent-nuclease-subunit-A	unknown	unknown	gnl\|CDD\|274299
CP012309.1\|AXU71004.1\|1133412_1134624_+\|nuclease-subunit-D	unknown	unknown	gnl\|CDD\|273178
CP012309.1\|AXU71005.1\|1134610_1138138_+\|exonuclease-subunit-C	unknown	unknown	gnl\|CDD\|129705
CP012309.1\|AXU71006.1\|1138268_1139522_+\|modulator-of-ions-transport	unknown	unknown	gnl\|CDD\|224173
CP012309.1\|AXU70991.1\|1102220_1103885_+\|cell-wall-anchored-protein	unknown	unknown	gnl\|CDD\|200549
CP012309.1\|AXU71001.1\|1125252_1126083_+\|Inactivated-superfamily-I-helicase	unknown	unknown	gnl\|CDD\|378929
CP012309.1\|AXU70998.1\|1118764_1120777_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|376559
CP012309.1\|AXU71000.1\|1122924_1125144_+\|helicase	unknown	unknown	gnl\|CDD\|223288
CP012309.1\|AXU70987.1\|1098485_1099322_+\|spermidine/putrescine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
CP012309.1\|AXU70992.1\|1103933_1105190_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|133045
CP012309.1\|AXU71002.1\|1126072_1129540_+\|ATP-dependent-nuclease-subunit-B	unknown	unknown	gnl\|CDD\|213736
CP012309.1\|AXU70994.1\|1107342_1108416_+\|TIM-barrel-fold-family-protein	unknown	unknown	gnl\|CDD\|381626
CP012309.1\|AXU70990.1\|1101382_1102231_+\|signaling-protein	unknown	unknown	gnl\|CDD\|225109
CP012309.1\|AXU70988.1\|1099372_1100101_+\|spermidine/putrescine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
CP012309.1\|AXU70993.1\|1105212_1107294_+\|cell-wall-anchored-protein	unknown	unknown	gnl\|CDD\|377001
CP012309.1\|AXU70996.1\|1109671_1110646_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|224619
CP012309.1\|AXU70995.1\|1108469_1109594_+\|UDP-N-acetylglucosamine-2-epimerase	unknown	unknown	gnl\|CDD\|223458
CP012309.1\|AXU70989.1\|1100100_1101153_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270308
CP012309.1\|AXU70997.1\|1116241_1118260_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
CP012309.1\|AXU70999.1\|1121018_1122932_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU71003.1\|1129539_1133367_+\|ATP-dependent-nuclease-subunit-A	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
CP012309.1\|AXU71004.1\|1133412_1134624_+\|nuclease-subunit-D	gnl\|CDD\|273178	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD. All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely homologous to the MRE11 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.04894e-62
CP012309.1\|AXU71005.1\|1134610_1138138_+\|exonuclease-subunit-C	gnl\|CDD\|129705	TIGR00618, Nuclease_SbcCD_subunit_C, exonuclease SbcC. All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	3.77549e-40
CP012309.1\|AXU71006.1\|1138268_1139522_+\|modulator-of-ions-transport	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	4.11548e-126
CP012309.1\|AXU70991.1\|1102220_1103885_+\|cell-wall-anchored-protein	gnl\|CDD\|200549	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria. This family corresponds to a group of uncharacterized bacterial proteins with high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily. Some family members contain an additional copper amine oxidase N-terminal domain.	1.18265e-104
CP012309.1\|AXU71001.1\|1125252_1126083_+\|Inactivated-superfamily-I-helicase	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	1.14881e-13
CP012309.1\|AXU70998.1\|1118764_1120777_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|376559	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls.	3.51979e-60
CP012309.1\|AXU71000.1\|1122924_1125144_+\|helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	1.34108e-56
CP012309.1\|AXU70987.1\|1098485_1099322_+\|spermidine/putrescine-ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	5.93557e-87
CP012309.1\|AXU70992.1\|1103933_1105190_+\|glycosyl-transferase	gnl\|CDD\|133045	cd06423, CESA_like, CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.	1.58452e-61
CP012309.1\|AXU71002.1\|1126072_1129540_+\|ATP-dependent-nuclease-subunit-B	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
CP012309.1\|AXU70994.1\|1107342_1108416_+\|TIM-barrel-fold-family-protein	gnl\|CDD\|381626	cd19608, GH113_mannanase-like, Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins. Mannan endo-1,4-beta mannosidase (E.C 3.2.1.78) randomly cleaves (1->4)-beta-D-mannosidic linkages in mannans, galactomannans and glucomannans and is also called beta-1,4-mannanase, endo-1,4-beta-mannanase, endo-beta-1,4-mannase, beta-mannanase B, beta-1, 4-mannan 4-mannanohydrolase, endo-beta-mannanase, beta-D-mannanase, 1,4-beta-D-mannan mannanohydrolase, and 4-beta-D-mannan mannanohydrolase. (1->4)-beta-linked mannans are polysaccharides with a linear polymer backbone of (1->4)-beta-linked mannose units (in plants and fungi) or alternating mannose and glucose/galactose units (glucomannan in plants and fungi, and galactomannan and galactoglucomannan in plants), such as in the hemicellulose fraction of hard- and softwoods. Complete degradation of mannan requires a series of enzymes, including beta-1,4-mannanase. According to the CAZy database beta-1,4-mannanases are grouped into various glycoside hydrolase (GH) families; GH family 113 beta-1,4-mannanases include mostly bacterial and archaeal sequences.	1.04835e-54
CP012309.1\|AXU70990.1\|1101382_1102231_+\|signaling-protein	gnl\|CDD\|225109	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms].	5.35599e-13
CP012309.1\|AXU70988.1\|1099372_1100101_+\|spermidine/putrescine-ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	2.61745e-82
CP012309.1\|AXU70993.1\|1105212_1107294_+\|cell-wall-anchored-protein	gnl\|CDD\|377001	pfam03170, BcsB, Bacterial cellulose synthase subunit. This family includes bacterial proteins involved in cellulose synthesis. Cellulose synthesis has been identified in several bacteria. In Agrobacterium tumefaciens, for instance, cellulose has a pathogenic role: it allows the bacteria to bind tightly to their host plant cells. While several enzymatic steps are involved in cellulose synthesis, potentially the only step unique to this pathway is that catalyzed by cellulose synthase. This enzyme is a multi subunit complex. This family encodes a subunit that is thought to bind the positive effector cyclic di-GMP. This subunit is found in several different bacterial cellulose synthase enzymes. The first recognized sequence for this subunit is BcsB. In the AcsII cellulose synthase, this subunit and the subunit corresponding to BcsA are found in the same protein. Indeed, this alignment only includes the C-terminal half of the AcsAII synthase, which corresponds to BcsB.	2.13232e-57
CP012309.1\|AXU70996.1\|1109671_1110646_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	4.71614e-46
CP012309.1\|AXU70995.1\|1108469_1109594_+\|UDP-N-acetylglucosamine-2-epimerase	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	9.22721e-171
CP012309.1\|AXU70989.1\|1100100_1101153_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270308	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain that functions as the primary high-affinity receptors of ABC-type polyamine transport systems. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.31138e-143
CP012309.1\|AXU70997.1\|1116241_1118260_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.10943e-59

>CP012309.1|AXU70996.1|1109671_1110646_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MARKLIKNLGKSKSVKRVKLLFKKIFITVFIVASIVAIFNITKYFEELYKVRDLKSTKIEYYMDVADEAGDGKVQLSWKALLAIDMVIHDEDLSNIKKKDTLDIGEKFIVEDKNDKGEKVYKVKKFNKVLSELKFDSSQKSRARKYMKDLEYTYLGNKQLDSSDEKIKFIKKLEDSAIREYIDYGILPSITIGQAILESGWGNSKLTKQSNNLFGIKADKAWKGKSVEISTSEHYNEKIVASFRSYNSLQDSVKDHSLFLINNKRYRKHGLFEAKDYISQAQSLENAGYSTAEDKKGNRIYAELLIDVIRSYNLQLIDNKVETK
>CP012309.1|AXU70995.1|1108469_1109594_+|UDP-N-acetylglucosamine-2-epimerase
MNDIKVMTVFGTRPEAIKVAPLIKELEKRENINSIVCVTAQHREMLDQVIETFNINVDYDLDIMEKGQSLNDITCKILNKLPLILNKENPNIILVHGDTTTTLATSLTAFYNKTLVGHIEAGLRTYDKYSPFPEELNRQLTGIIADMHFAPTNLARKNLISEGKPNNNIFVTGNTAIDALKMTIKENYNHPIIDEIGNDRMILLTSHRRENLGKPMKNIFRAIKRIVDDFEDVQIVYPIHLNPKIRTIADEIFGKFPEKIHIIEPLDVADFHNFLNKSYMIMTDSGGIQEEAPSLGKPVLVLRDKTERTEGIEAKTLKLVGTNEDRIYNSVSDLLINKDNYVQMSKASNPYGDGNASKYIVDIIIKKFNCKYLN
>CP012309.1|AXU70994.1|1107342_1108416_+|TIM-barrel-fold-family-protein
MNEFKLKRSILISLIILIFIFIVYFVSIELKDRSLVNNQYKGKIKSANLSVDYEINQVMKDIDKLGLNTVNVPIIINVESINSDIMSIDNNSKEKAIKLIKKLNKKGISTILEAYPWIENGKLYETDWNPINKKRFFYTWQNAILNELIIDVANPLDVNVLNIGSNFVHLEEYQQNWGEIIDFVQSKFDGLVTYRTNWWYTKKDDLSSKLFYEQKLNNNFFDKLDFISIAAYFELSNKPVNTVDELISALHSSTVNNRGQNIKQEIYNLYKAHRKPIFFGELGFSNRESASSQPWNHTPSKAVNGEEQARCFEAYKKVFENEDWINGFSVFCVGKIDDEKNFYPSKESIKVIKSWYE
>CP012309.1|AXU70993.1|1105212_1107294_+|cell-wall-anchored-protein
MKKFIISIISLVLFFSNISLIYKVNADETKVKNYKFERDITIDGVIGSNSTFFEVNKNWDIEEVLLHLNFSKSQILNGDVSSLTVLINNVPIKSIKLNAKTNYKNTLEVLVPKDYIIQGYNEIKIKTYKTISDKICQDDSNTGNWMVIHKESYISIRYKQKKVENSINEYPYPYAEIENNHKLDTTIVVPDNMTRGETTAVFNLASAFGKITKNDDLKLDVKLYSEMKNWSDDNIIYIGKPENTAEEILDILSIKEQTLLSSNCIIKQVDSPYNKNKKMMVVIGSNEDDLIKASNLLIENRLSNQVLSSSVLVNKETNIKINREQKLNLGHLTLKDLGYSDFLLEGAFNQQALFDVKIPTGKVLDDGSKIILNLRYSDNLDFEKSLVTVSINDVIVGSKKLDRSHSNNDKLELKIPKDIDNKNYYQVKLTFNLSIKNSNCVTRESNNPWAYVSNNSYLALSTKENETLSFENYPYPFVRDDEFNDLTVIMPDYSGSQAMTWMFRLGVTLGANINSHNGNINVIRGKEFSDKYKDTNIVVFGVPHNNSVIKMLNNNLNIKFDKNYSNFISNDKISFIDDYGKNISTIQLIKSPYNNQKNIMVISSMNEKNLYLGMDYLLNKSKVNDLKGDTLIIDEYGEVEDLAYNLKSKKEVKDSSWNMSINKTTKVFLMISFITIIVVMILSMLYIKKYKRR
>CP012309.1|AXU70992.1|1103933_1105190_+|glycosyl-transferase
MRDLNVSEYLFVFSLFSIWSLLLINIILAMGGYIFYFKNFDKEIKEIDEYPMISILVPAHNEAKVIGRTVESLLLLNYPKSKMELIVINDNSSDNSKEILENIKDRYNNYNFTIINTDSLTGGKGKSNALNIGYTISKGDFIAVYDADNTPDKNALRYLVQTIVMNDELGAVIGKFRTRNKNKNLLTKFINIETLSFQWMSQAGRWQLFNLCTIPGTNFILRRSIIEEIGGWDSKAIAEDTEISFRIYKLGYKIKLVPQSITWEQEPETVKVWIKQRTRWAKGNIYVLMKYIKNIFKQGRNKIVFDIAYFFSVYFLFLTSVIISDILFVLSISKLVEISIPINFFLIWILSYLLFIIEVSISLTIEKGEATIENIFIVAIMYFTYSQLWLFVAIKGMIEYLKDIIFKREVKWYKTERF
>CP012309.1|AXU70991.1|1102220_1103885_+|cell-wall-anchored-protein
MMFKIFNKSLLKLVVVLSIVLTISNFSLSSYASEITSSTDKVLIIYDSKKETAYNRDILNIMRTLLGRFSSDIELLKLSNYDGEINKNYYSHIFILGINENSYNNDKNTKNLISSLNSYKGTICWLGYGIENLLEHKKYNLDYVGKTNNIVSVNYRGKSYNLDEHYVFNIVESKDTSNKVIGSINDTLNKYPYIINDKNLFYVSKLDLDGVLFYIFCDSLNDIFNIKTFDKGRIFVRIEDVHAFREPKNLVEIADYLSSKNIPFTIALIPAYVNPKNHKVITLSESPEIVKAIKYMQDKGGTVILHGYTHQYKKEEVSGEGYEFWDGKKDEPLKENMKIFVKDRVLNGLRVCIENGIYPLAFEAPHYAMESEGYKELKKYFSTYMGQHQNNDKKFSTNTYPYIIRDTEEFNIFIPENLGYIDPEDKFTFQNIKENLNKLSIVRGFSGGFFFHSYLNIEYLKNTIEYLEKQNIEFMNLRDFNNWVKVDEIQIRNNGDEIIVNYDKDLDELTKSDTRFKSISNISKILIFIVSTSVLIFVIIFIYFKRIDKKKFLK
>CP012309.1|AXU70990.1|1101382_1102231_+|signaling-protein
MNRINKKIDLLILALLVFIFLIVGIVILSIRTENKLNVFIMLAIIFFIIMLTYLSNSVVGLITSSIIIFMYTSYILYNNITHNMDVEFISYMWIIATPVSSIIMGNLNKSINELQNTNKKLSEQYKELVTIDSETGLRNLKIFYNDVNMEISKSIRHNTDFSLMIVKLPYYGNLQTIFGENKTNKIVKYIGSNIIECTRNEDIIYSLQKDMIGILMPNTSLEGSKVVKDRIKKRIKELNLDLNNRGKYVNIDVKIAFLQYKSSFGDSINFKNIVEEELQYDV
>CP012309.1|AXU70989.1|1100100_1101153_+|spermidine/putrescine-ABC-transporter-substrate-binding-protein
MIKFKKAISLIAVGMMTVTLFTGCNKATDSTKVLNVYNVGDYIDESLIDKFEKETGIDVQYSTYDTNEMMYQKVKSGSTHYDLVFPSDYMVEKMKNEGLLEKLDFKNIPNMKYLDKSFLNPVYDKTNEYSVAYMWGTLGILYNKKEVKDPMDSWNILWNPKYKGNIMMFDSVRDTIGITLKKLGYSMNSVNPKEINEAKNLLMKQKDLVLAYVNDEGKDRLLGGEVAMGMLYSGDAVTLMEQNPDLDYAIPKEGTNKWVDAMCVPTTAQNKKEAELFINFLLDPENAKVNAEYIGYSTPNTGALKLLDPEITQNPVAYPSKEVLDKCETFEDIGENIKLYDKAWIELKSK
>CP012309.1|AXU70988.1|1099372_1100101_+|spermidine/putrescine-ABC-transporter-permease
MYAPIFALVLFSFNDSKSMARWNGFTWKWYGQLLQNESIMSALYYTIVIAILASVISTIVGTISAIGIHKMRGKSKKLILNVNYLPILNTEIVTAVALMSLFVFVKMEFGFTTMLLAHIMFCLPYVILSVLPKMKQLPDNIEDAAMDLGATPIYALRKVILPQIKPGIVSGFLIAFTMSIDDFIISFFNAGNGVSNLSIEIYGMARRGIKPEINALSTIMFAVVLGLLLLANKKESIVRGIK
>CP012309.1|AXU70987.1|1098485_1099322_+|spermidine/putrescine-ABC-transporter-permease
MKRKSFLAYPYVVWSAIFVIIPLILVVFFSFTKESGGGYAFTLENYKEVIDPIYMKVFGRSILLAGGATLICLIVGYPVAYIISKARVSRRGSLILLFILPMWMNFLLRTYAWVAILGKNGLLNTFLGWFGIQPLAILYTNFAILLGMVYNFLPFMVLPIYTALSKMDNDLINAAHDLGANNMTVFRKIIFPLSLPGVMSGITMVFMPAVTTFAISRLLGGGKIMLVGDLIEQQFTVVGDWNFGSAISIFMMIVILISMSIMSKFGDESDKEGGGLLF
>CP012309.1|AXU70997.1|1116241_1118260_+|N-acetylmuramoyl-L-alanine-amidase
MRRNTKLLTTGILSMAIVTPTMAFATESNAMENNADLNINLEKKSIVLGSTSKVSVKFKEKPDADSITLKYKCYDMPLDTTLNYNQSTESYEGTINYNKDPEYLNVWELQGITINSKNNPKTLNKQELEKMGLNLKDYNVTQECIIEDITSRKDVNKYLRKTSAPITELTGSDRYETAVKISKEGWKNGSDKVVIINGDVSIDGIISTPLATTYNAPILLVEKNNVPNSVKSELKRLNPRDVIIIGDENAISKTTANQIKSTVNASQTRLKGSNRYETSLLIAKEIDKNHDVEKVYITNANGGEVDALTIAAKAGQDKQPIILTDKNSITDNTYKWLKSEDLQNAYFIGGPQMISTNVINKVNDITKDNVTNNRVYGADRHETNANVIKKFYTDDELEAVLVAKSDVLVDALAAGPLAANLKSPILITPKTYVSAYHKENLEAKSANKVYKIGGGLTSKVMNSIASSLSKHNTTPTEPGNSGGKTVMIDPGHGGSDTGTTGKPLGGIKEKDYTLNTSLATTEYLRSKGFNVIMTRDTDKTLSLGNRTALSNSLRPDLFTSIHYNASDTTGNGVEVFYKLKDKDGGTTKTVATNILNRILEKFNLKNRGAKTRTLSTDPTKDYLYVLRNNDMPAVLVECAFLDNEKDMSLLNTSNKVKEMGTQIGKGIEDSLK
>CP012309.1|AXU70998.1|1118764_1120777_+|N-acetylmuramoyl-L-alanine-amidase
MRRNTKLLTTGILSMAIVAPTMAFATESNAMENNADLNINLEKKSIVLGSKSKVSVKFKEKPDADSITLKYKCYDMPLDTTLNYNQSTGAYEGTINYNQDPEYLNVWELQGITINSKNNPKTLNRQDLEKLGLNLKDYNVTQECIIEDITSRKDVNKYLRKTSSPITELTGSDRYETAVKISKEGWKNGSDKVVIINGDVSIDGIISTPLATTYNAPILLVEKNNVPNSVKSELKRLNPKDIIIIGDENAISKTTANQIKSTVNASQTRLNGSNRYETSLLIAKEIDKNHDVEKVYITNANGGEVDALTIAAKAGQDKQPIILTDKDSITDNTYKWLKSEDLQNAYFIGGPQMISTNVINKVNGITKDSVTNNRVYGADRHETNANVIKKFYTDDELEAVLVAKSDVLVDALAAGPLAANLKSPILITPKTYVSAYHKDNLEAKSANKVYKIGGGLTSKVMSSIASSLSKHNTTPTEPGNSGGKTVMIDPGHGGSAPGNSSGGMIEKDYNLNTSLATTEYLRSKGFNVIMTRDTDKTLSLGNRTALSNSLKPDLFTSIHYNGSTNKQGHGVEVFYKLKDKNGGTTKTVATNILNRILEKFKLTNRGIKTRVLPSDSTKDYLYVLRSNDMPAVLVECAFLDNENDMSLINSSAKVKEMGTQIGKGIEDSLK
>CP012309.1|AXU70999.1|1121018_1122932_+|hypothetical-protein
MEYLFEKSSLKEYGNEALDKYRELLDKTGNNSRCILLLVPNNNTKIRYERALRLNYSEELKITTYISFVKKELVKYWPLIIEKCDGISTKAVSPTFISNSLSEYLIVQKVKEKRIQEGYFEDITGTNKSIANSIMTNINKSAFNLIDFDFIGEKIYSSKKNKDSIYRFSYTQMDEIISYYINSLLSNSILDNALSIYLYNQYLLNDDFYLKNLFTEVRYIIVDSLESSSNAEVDFITEALDNTLQSYIYFDYSRDYSVFNNVDIDYINEKIISKIKPKEENIKKKEIRIEDLYLLPANIELNQSSQLYNEMLDLISEKVISLIEEDVSPRDIAIISPINNSILEHQIRDSLIEKNIDVFSTKKDKKAVDYPYGNALVVATCIFYGYLDFIKDDEYLSFLETLLEINRIKAFKIFNETRHLSIDNIDEHSQYRDILQYIEEKKKSDIKIHEFLTQFYIDKMLNLKEGKKNVGLCKKIIAESESFSESLSLLGMKKEKIFVEALKSTINDYYSVVDIEELKSKDKIVITTPYSYISSNIDRSIQIWVDIGSNAWNMKIEKDISNLIVLRKSFKEKKIYTNEMEEYYKKYYLYNTVYNLLLNAKKIYAFKSEYAINGYIQESILYSILLKISHKGDKNYD
>CP012309.1|AXU71000.1|1122924_1125144_+|helicase
MININYREDQIPIINYDNGTMAVPAVPGAGKTFIITNLVAKLLLEQKHKGGKILILTYMNSAVNNFKGRIRKILEENKIDDTNSYEVMTIHSLAVKIIKEKPEVVMLSEDFNIADDLQKSIILNECISRFRFEGGERAFRWFLKEQKDERWKEITLEAWERGFFEFAGNAISELKYKGISPDKLEEILSRGHKGMLKIILPIYKLYDRKLKQNGLLDYDDILILAEKTLSLDEGLRKKFQTRYKYIFEDECQDSNEIQGNIIKIISSENKNLVRVGDINQSITGTFSSSDPKFFKEFINSADFCYRMDMSNRSSKDILDLANTLVKYVTKEFRQKECRHALEDMQIKTVPNGMGYKENPNPEHYNINVKWYESWKIEIEQTARYVKGIKNKYPDKSIGILVPFNEQVTQVAKELRENNLTFEELGPNSLNKRKVINNIAYIIDFMLHCDDVEKLIVVLNKVFIDTDNEEEIKYFLEELKNYSTEEIIYNFEFSKLDNDLIEFKEESDIYLSFKRGIDIIKQILEYPIIRLDLLVLFIGKKLNLEKEDKAVLDYISFYIKYLVSENINMDLEDVYNLLFDVKNRVFNHIIDVVYEINGYEPEPGSITLCNYHKSKGMEWDCVFLLGLVEYNFPDNINQKFQSDKWYLKEKYKNPMAIIKSEVEAILKGSISTDYAHKTKIDSINEKIRLLYVGITRAKEMLVLSGSAYRDESDIGNKRKEQKPCIYLSRLNQHIIEKRSN
>CP012309.1|AXU71001.1|1125252_1126083_+|Inactivated-superfamily-I-helicase
MNDKLKYFSYSQNSINTYKSCPLKFKYKYIDRINWKNDDVGSREYYETLKTGRDFHLICERYFSNIPLGIYFNEDDKNSKKFLKWMENIKKVVPIEKGKTYLPEYEVRMTLNGDIIQAKYDLVVIGNNNIEIWDWKTESKKIDYKHVENRIQTIVYMFLAKEVIPKVLKMDINVKDINMRYYQPEFDDLPITISYDEEKHEANRNKIQNYISMIKNTNYEEHTYEDNLYNDIEKVYNKEERMCYRNKKHCKYCEFNKLCNGKEIDYSILEAEIYGT
>CP012309.1|AXU71002.1|1126072_1129540_+|ATP-dependent-nuclease-subunit-B
MGLRFVLGRSGSGKSTYILDEIKKEAQKNETTSIILLVPEQYTFEAENRVSKLFLGKEKDKYLRVRVLSFKTLSNIVFSQVGGLTDVNINSSGKAMMVYRAIEDVSEELNVFSKSKSQSGFVSSITDMISEMKQYNISPEMLENISGELDNETLSLKLKDISKIYNSFEGKLHENYVDAQDMLTSLASKIELSSYLDGACVYIDEFTGFTPNQYNVIKSILNKSKSVNISLTVDDINYIGYSKSDMFSRTKFTYSKLTQLCNEEGIKILPQVNLNTGVIKRFEKVKELQHLERFYNAYPYKIYSNQTENIKIKEFNNLYSEVEEIAREIVHLVRDKNVRYRDITIATRDLNRYDFLVHSIFNEYNIPNFIDKKREAKSNPIVILIISALEMKNRRYGYETMFRYLKSGLIGIDNDDINLLENYVLANGIKGKKWFDEKWDYRITQSLSGQESEFELELKEKINEIKNRVLEPIVILQEKLRGKNRVKEICRYIYEFLLDINMPETIESLIVNFKDKGELDVANQYSQVWDIVVDILDQMVELMGDEIISLEKFIKLITLGFDEYELGLVPPSIDQVLVSSVDRMKNPDTKYLYLVGTTDGVFPLITKDSGILSDNDRESLGNKGIEVDIDSKTRSFEEQFLVYKALTSTSKNLTITYPISDHEGKTLRPSIIISRLKKIFPNIENKSYLVEENKSTDKDILKKITVKSPTFNELINVIKNYDSDGYNTEEINSIWLDIYRYYLKDEIYSSITKKVIKGLSYTNQVHKIEEKKIRSLYKSNSLSISRLEKYAECPFAYFIQYGLKAKKRKEYSFTPPDLGTFIHNILDRFSKELLQDNLTWRDIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIKQGSFEPIDYEVKFGDNGKYPPIKMVLENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSGNKSISLTEIYYGLQLQLLVYLDAILESAKDEDININPAAILYCRINNPIAKFNEDKDDEEIQEAILKELRMKGLVVKDSHIVKEMDKSLIDGERKNSLVIPVGLTKDGNVGKSTSAISYEDFKLLRKYVRHAIKDLCEEMLSGEIRIAPYKHKDGTSCDFCDYSAICQFDSTIKDNKYKNLNNKSNEEIIKMMKGDVN
>CP012309.1|AXU71003.1|1129539_1133367_+|ATP-dependent-nuclease-subunit-A
MSSPKWTKEQLEVIESRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAIGKALDENPENKHLQNQLVLLNKSSITTIHSFCLDVIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDIILGIYSFAMASPEPKKWLIDSAERFNIDENFDFSQSIWARAILDTVKIEINGLCLNMERALKEVESIEELETFAEKLSVEYKKIADISQACNKSWDEAYKKMASMSFENYVKGVKRISKDAPSYIKESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPISSVVLRFEEEYSNKKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNKFYEIFIDEYQDSNLVQEVLLKAVANTETPNRFMVGDVKQSIYRFRQAKPELFLQKYNNYNDKKGSSHRKIMLYKNFRSREEVVGAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSIIGGATEIHLIQKDNKLDDDIINDKDDRINNKEDEIEEEEKLDNIQLEARMVGKIIKDLMKVNEDGKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPVFADELMNMDIPTYADVGVGYFDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKSTAEYDGFTDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYYAYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGENANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFPSIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGIESLDTISQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWNKNDILVEKKSDEEKESIEEILEKIDVDNPDSDYYSEIEEKLNYIYPYEFSTRKPATISVTEIKKIQNNYEEELINTIFEQKVILKKPIFIQNEEEREKISGTERGTIVHLVMEVLDLKNVSSVNDIKSQIRGFVSKGIITEKQASIVNPYKIYKFFASNIGKRMLNAEIINREKSIYAQVNMKDIYIYEKLINNDDKKLYDNESVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLDLYADIIETLTGKSVKEKCIYLFGVDEAVCY
>CP012309.1|AXU71004.1|1133412_1134624_+|nuclease-subunit-D
MRFIHTSDWHLGKSLEGHSRIEEQAKFCEEFIKIVESNEIDMVIIAGDVYDTSNPPAQAEKLFYQTVSRLANNGQRCVLIISGNHDNPERLSAITPLAHEQGILIYGYPLSATIKAKYKGFEITYATQGCTKLNINGENIVVATLPYPSEKRLNEVFSSEDEFEKQKNYSEKVGDIFRSLEENFRSDTINIAVSHIFVIGGESTESERPIQLGGSFLVERKDLPEKAQYTALGHLHKQQKASERLNAYYSGSPLQYSKDERAYTKGAYIVDIKAGEKPIIEDVYFNNYKPIEVFKCNGIEEALDICEQNQDREIWSYFEINTDEIISQNEIKKMKELLKDIIEIKPIITSCYEQESVDIKEKSMAELFREFYSFSKGVEPKGELMDLFLDIISEEGESADETN
>CP012309.1|AXU71005.1|1134610_1138138_+|exonuclease-subunit-C
MRPIRLELTGLNSYIDKQVIDFEKLIERGLFGIFGTTGSGKSTILDAITIAMYGNISRNTKEYINSVCDKAIISYEFEIGSKNTRRRYIVDRTIARSKTGTKTSNARLIEVLNDNTQNVLADKVVEVNEKVAQVVGLTANDFTRSVVLPQDKFNEFLRLSRADRRDMLERIFNLEKYGRSLGEKVKKRKNIQLQNLKDLKSKLSQYDGITEEVYNNINQELIELKNLEKDKNNALDLAQKSYEESKTVYEEQLKLEKNELRKNELDLKNSEIKEKIALVENDSNAKKVDPYISSVQNLEKKIDEDSFAVSNLEKKLAILNQELEVTKNRYEKINKIKNEEVPKLSEEKIRLQQAIKLEEELVLLDRELKELKESGINLNKTKVELEKVKQVSESRKDAVTKSIKEVEGKIDKVNISAELKQKIFLAYEYEKDYNNVLEEKNQKLNKLEEILKETENINLKVRYIDKDKNDVNRNLENLSLHLDVLLKKCPGKSADLLLKSEYVTELRNKANNTKENEIKKSSIQDELKIILESKFNTEREVNLLNEKLENNRKNRDDLEKELEELKYLNLASELRRELKENMPCPVCGSKHHENNDITKYDENISFVKEKLEKLEKEKISIRNNIEELNAKVSGYLSIEKMKTKELEDVKGKLGGIPSSQLLKKLDEEQRKLALLKSNIQEWEKEKESTENKVTLAKEEKNKIEKEELKIRESLNNYKKLTRDLNIEIEGLENKCKKIKQEYLGLKTITKVSNLLSKVKEIRENEKELELLSTGHSNLLKNRDSLDIKIRENESKLHEIEIELIKARELYVEKKLSRDNKYKEVISITKGDLAKNLLHNVEENICKILEQEESSKKKLEEQRLEYEKNIAEKHNIDGRLKTAKEQYKDQKSTLNKLLAENKFESIYAVKRALLDTDAVKKLIEEILEHEEEQKLLSFKIKSSKEKLNGRSIKKEYFEQLKDEIYNLKVEIGNISKDIGANQNQLITLKDSLDKINDFNKQLKVVEHNVDLLEELDKCVQGNKFVEYVSTNQLKYIALEASKRLDGITKGRYALEIDSTLNFVMRDNFNGGERRSIDTLSGGETFLTSLSLALALSSQIQLKGSAPLEFFFLDEGFGSLDSELLEIVIESLERLHSNNLSVGIISHVEELKNRVPVKLLVSSSEAGIGSKVKIEYS
>CP012309.1|AXU71006.1|1138268_1139522_+|modulator-of-ions-transport
MLESPNNLIQIIFLIVLLIGSAFFSASETALMSLSKIRIRYMQDEGVKGAKLVSSLIENPNKLLSSILVGNNVVNIAATSISTSLFIGLMGEKGVALATAVMTVLVLIFGEITPKTIAANNSEKVSLLVSKPIKAIIFILRPIVWIFNIITNIIFKLFGITNKGAKSFITEEELKTMVNVSHEEGVLEMEEREIINNVFEFGDMQAKNAMVQRIDMVAIDMEDSYDEIIQVFKTEKLSRMPVYEETIDDIVGILNIKDIIFLSDEEIESFDIKNYMREPFFTYEFKKITQLLEEMKLEKSQMAIVVDEYGGTSGLLTIEDLVEVIVGDIEDEYDEEEDEIQVIKEDEYIVDGSTKIGDVNELIGVNLESEEFDSIGGFIIGHLSRLPEENEVIEVDNIRFCIESIEKNRIKKIRIYT

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Crispr_ID: CP012309_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_7

1311260-1312010

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTAAGTGGTATGTAAAG	PILER-CR
GTTTTATATTAACTAAGTGGTATGTAAAG	CRISPRCasFinder
GTTTTATATTAACTAAGTGGTATGTAAAG	CRT

11 spacers

The CRISPR arrays of CP012309_7

>merge|CP012309|7|1311260-1312010|PILER-CR,CRISPRCasFinder,CRT
GTTTTATATTAACTAAGTGGTATGTAAAGCCAAGTATTACCAAATTATAACATAGAAATCATAGAGTTTTATATTAACTAAGTGGTATGTAAAGAGCTGAAAAGGTCGCAAACATAGCAGAAAGAGGAAAGTTTTATATTAACTAAGTGGTATGTAAAGCGTTTATGATTTTTAATTGCATATTCAATAAAAAATTGTTTTATATTAACTAAGTGGTATGTAAAGAATACTGTTGTCAATAATCCTATTACTGTTAATGTTAGTTTTATATTAACTAAGTGGTATGTAAAGAAAGGAACTTTACCGCTTATCACTTCTTTTTTCTGTAGTTTTATATTAACTAAGTGGTATGTAAAGAAAGGCATCAGGAGAGATGAATTGAATCAAGGAGAAGTTTTATATTAACTAAGTGGTATGTAAAGAATTATTTTTCATAGTGGCAGCAACTTCAATTAATGGTTTTATATTAACTAAGTGGTATGTAAAGTCGCACGAATCCGTGCGACGTAATTAAAATTATATAGTTTTATATTAACTAAGTGATATGTAAAGCCATCAACCTTATCAGAAACTTGACCATCCCAATCATAGTTTTATATTAACTAAGTGGTATGTAAAGACATTTGCAATTTAATGTTAACTATCAATACCCCCAATGTTTTATATTAACTAAGTGGTATGTAAAGAACAAAAAAGATACATCTGTAACTAATTTTTATACTGTTTTATATTAATTAAGTGGTATGTAAAG

>CP012309|7|1|1311260-1312010|PILER-CR
GTTTTATATTAACTAAGTGGTATGTAAAG	CCAAGTATTACCAAATTATAACATAGAAATCATAGA
GTTTTATATTAACTAAGTGGTATGTAAAG	AGCTGAAAAGGTCGCAAACATAGCAGAAAGAGGAAA
GTTTTATATTAACTAAGTGGTATGTAAAG	CGTTTATGATTTTTAATTGCATATTCAATAAAAAATT
GTTTTATATTAACTAAGTGGTATGTAAAG	AATACTGTTGTCAATAATCCTATTACTGTTAATGTTA
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAGGAACTTTACCGCTTATCACTTCTTTTTTCTGTA
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAGGCATCAGGAGAGATGAATTGAATCAAGGAGAA
GTTTTATATTAACTAAGTGGTATGTAAAG	AATTATTTTTCATAGTGGCAGCAACTTCAATTAATG
GTTTTATATTAACTAAGTGGTATGTAAAG	TCGCACGAATCCGTGCGACGTAATTAAAATTATATA
GTTTTATATTAACTAAGTGATATGTAAAG	CCATCAACCTTATCAGAAACTTGACCATCCCAATCATA
GTTTTATATTAACTAAGTGGTATGTAAAG	ACATTTGCAATTTAATGTTAACTATCAATACCCCCAAT
GTTTTATATTAACTAAGTGGTATGTAAAG	AACAAAAAAGATACATCTGTAACTAATTTTTATACT
GTTTTATATTAATTAAGTGGTATGTAAAG

>CP012309|7|6|1311260-1312010|CRISPRCasFinder
GTTTTATATTAACTAAGTGGTATGTAAAG	CCAAGTATTACCAAATTATAACATAGAAATCATAGA
GTTTTATATTAACTAAGTGGTATGTAAAG	AGCTGAAAAGGTCGCAAACATAGCAGAAAGAGGAAA
GTTTTATATTAACTAAGTGGTATGTAAAG	CGTTTATGATTTTTAATTGCATATTCAATAAAAAATT
GTTTTATATTAACTAAGTGGTATGTAAAG	AATACTGTTGTCAATAATCCTATTACTGTTAATGTTA
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAGGAACTTTACCGCTTATCACTTCTTTTTTCTGTA
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAGGCATCAGGAGAGATGAATTGAATCAAGGAGAA
GTTTTATATTAACTAAGTGGTATGTAAAG	AATTATTTTTCATAGTGGCAGCAACTTCAATTAATG
GTTTTATATTAACTAAGTGGTATGTAAAG	TCGCACGAATCCGTGCGACGTAATTAAAATTATATA
GTTTTATATTAACTAAGTGATATGTAAAG	CCATCAACCTTATCAGAAACTTGACCATCCCAATCATA
GTTTTATATTAACTAAGTGGTATGTAAAG	ACATTTGCAATTTAATGTTAACTATCAATACCCCCAAT
GTTTTATATTAACTAAGTGGTATGTAAAG	AACAAAAAAGATACATCTGTAACTAATTTTTATACT
GTTTTATATTAATTAAGTGGTATGTAAAG

>CP012309|7|2|1311260-1312010|CRT
GTTTTATATTAACTAAGTGGTATGTAAAG	CCAAGTATTACCAAATTATAACATAGAAATCATAGA
GTTTTATATTAACTAAGTGGTATGTAAAG	AGCTGAAAAGGTCGCAAACATAGCAGAAAGAGGAAA
GTTTTATATTAACTAAGTGGTATGTAAAG	CGTTTATGATTTTTAATTGCATATTCAATAAAAAATT
GTTTTATATTAACTAAGTGGTATGTAAAG	AATACTGTTGTCAATAATCCTATTACTGTTAATGTTA
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAGGAACTTTACCGCTTATCACTTCTTTTTTCTGTA
GTTTTATATTAACTAAGTGGTATGTAAAG	AAAGGCATCAGGAGAGATGAATTGAATCAAGGAGAA
GTTTTATATTAACTAAGTGGTATGTAAAG	AATTATTTTTCATAGTGGCAGCAACTTCAATTAATG
GTTTTATATTAACTAAGTGGTATGTAAAG	TCGCACGAATCCGTGCGACGTAATTAAAATTATATA
GTTTTATATTAACTAAGTGATATGTAAAG	CCATCAACCTTATCAGAAACTTGACCATCCCAATCATA
GTTTTATATTAACTAAGTGGTATGTAAAG	ACATTTGCAATTTAATGTTAACTATCAATACCCCCAAT
GTTTTATATTAACTAAGTGGTATGTAAAG	AACAAAAAAGATACATCTGTAACTAATTTTTATACT
GTTTTATATTAATTAAGTGGTATGTAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU71176.1\|1307864_1308686_-\|lipoprotein	unknown	unknown	gnl\|CDD\|276809
CP012309.1\|AXU71169.1\|1299385_1300711_+\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|274244
CP012309.1\|AXU71168.1\|1298369_1299182_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350160
CP012309.1\|AXU71178.1\|1312296_1312521_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP012309.1\|AXU71185.1\|1317940_1318510_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71175.1\|1306222_1307740_-\|site-specific-recombinase	unknown	unknown	gnl\|CDD\|238206
CP012309.1\|AXU71179.1\|1313199_1313355_+\|phage-anti-repressor	unknown	unknown	unknown
CP012309.1\|AXU71174.1\|1305915_1306200_-\|RNA-polymerase-sigma-27/28-subunit-RpsK/SigK	unknown	unknown	gnl\|CDD\|180266
CP012309.1\|AXU71181.1\|1314172_1314286_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71183.1\|1315581_1315926_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71186.1\|1318952_1319096_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP012309.1\|AXU71182.1\|1315071_1315455_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71180.1\|1313600_1313852_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71173.1\|1304154_1305819_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223839
CP012309.1\|AXU71184.1\|1317309_1317627_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71170.1\|1300923_1302003_+\|exported-aminodeoxychorismate-lyase	unknown	unknown	gnl\|CDD\|376862
CP012309.1\|AXU71177.1\|1308876_1310304_+\|cell-surface-protein	unknown	unknown	gnl\|CDD\|380277
CP012309.1\|AXU71171.1\|1302174_1302849_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
CP012309.1\|AXU71187.1\|1319661_1320171_+\|teicoplanin-resistance-protein	unknown	unknown	gnl\|CDD\|377417
CP012309.1\|AXU71172.1\|1302835_1304083_+\|protease	unknown	unknown	gnl\|CDD\|223896

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU71176.1\|1307864_1308686_-\|lipoprotein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.11852e-08
CP012309.1\|AXU71169.1\|1299385_1300711_+\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
CP012309.1\|AXU71168.1\|1298369_1299182_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|350160	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA). Human PNP catalyzes the reversible phosphorolysis of the purine nucleosides and deoxynucleosides inosine, guanosine, deoxyinosine, and deoxyguanosine. Patients with PNP deficiency typically present with severe immunodeficiency, neurological dysfunction, and autoimmunity. Escherichia coli PNPII, product of the xapA/pndA gene, catalyzes the phosphorolysis of xanthosine, inosine and guanosine with equal efficiency and has been referred to as xanthosine phosphorylase and inosine-guanosine phosphorylase. E. coli PNPII is also capable of converting nicotinamide to nicotinamide riboside, and may be involved in the NAD+ salvage pathway. It is one of two purine nucleoside phosphorylases found in E. coli, which also contains PNPI, which displays a different substrate specificity and belongs to a different subgroup of the nucleoside phosphorylase-I (NP-I) family than PNPII. NP-I family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	9.46657e-176
CP012309.1\|AXU71178.1\|1312296_1312521_-\|putative-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.71814e-08
CP012309.1\|AXU71186.1\|1318952_1319096_+\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	0.00149763
CP012309.1\|AXU71175.1\|1306222_1307740_-\|site-specific-recombinase	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	1.86731e-29
CP012309.1\|AXU71174.1\|1305915_1306200_-\|RNA-polymerase-sigma-27/28-subunit-RpsK/SigK	gnl\|CDD\|180266	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK.	1.70744e-41
CP012309.1\|AXU71173.1\|1304154_1305819_+\|penicillin-binding-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	1.4105e-97
CP012309.1\|AXU71187.1\|1319661_1320171_+\|teicoplanin-resistance-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	2.65878e-17
CP012309.1\|AXU71170.1\|1300923_1302003_+\|exported-aminodeoxychorismate-lyase	gnl\|CDD\|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	8.28326e-117
CP012309.1\|AXU71177.1\|1308876_1310304_+\|cell-surface-protein	gnl\|CDD\|380277	NF033435, S-layer_Clost, S-layer protein SlpA. In Clostridiodes difficile, the S-layer protein precursor, SlpA, is one member of a large paralogous family of protein that share several cell wall-binding repeats. SlpA is cleaved into a larger and smaller protein. The S-layer protein itself is important to adhesion, and portions of it are highly variable, and then N-terminal and C-terminal are well-conserved.	3.3506e-18
CP012309.1\|AXU71171.1\|1302174_1302849_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	2.98869e-60
CP012309.1\|AXU71172.1\|1302835_1304083_+\|protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.69627e-145

>CP012309.1|AXU71177.1|1308876_1310304_+|cell-surface-protein
MKIKKLLTIGLSLSIFIASCPISVNALDKIESIKGADKYETAGIIADKQNYTTAILINADSTMADGLSASGLAGAINAPILLTKKNNIPNATLKRLEKAKKVYIIGGENSIDKYTETVLKGKGIEIKRLQGSDRIKTSYNVAKEINSINKVNKVILTNAFKGEPDAMSAAPVAVRDKAAIVLTDGKSVPFNTTGVESYVIGGTSSMNDKIVKDTNSTRLGGTDRYDTNKKIINKFYSGVKEFYIASGTDLVYALVGSTVAKNTAIVLVDNDSNKSVLKSTIKLTAIGNLSDSILQQCLNVTKNIGDSNTGREYTVEDAANAVKKLLGVKKFYYEPNYSEDEDLIFLLDKNFDFSGKEYYVFAYIKQGAEGDVRYCVAKNDMSKVYTYDVNGNMKVCNPDDYKNKGSITEEQAKQIALKECAKRHKVSINNLVVDMIDFRDDIYSGNVYAVKINSKNSNGTFGWFFIDIETGKVYN
>CP012309.1|AXU71176.1|1307864_1308686_-|lipoprotein
MIISKKITAILVSFLIMISMVGCAPKESATEVAKKYLDSIEIKDYEVAYNLLSKDSKESVSLEKFEEYQDTLFKLQTLKDYKLGEENKVEKYKYSNKEYTNLVKIKETDTIKYITENKEDTANFDRYFIIEDNEYKLLWHKDFKRALSSNYVKIARSETEKDEDKDYNKAAIDIKKAIEIDDKNPLAYYTQSYIYIELQRYDEALKSIDKYLEYLDKNNEAYKIDASDAYNLRGVIFMSKSEFNKARESYNKALELNPDNEYAKTNLNDIKGL
>CP012309.1|AXU71175.1|1306222_1307740_-|site-specific-recombinase
MSVAIYLRKSRADEEAEKQGEFETLSRHKSTLLKLAKEQNLDVIEIKEELVSGESIIHRPKMLELLKEVEENKYDAVLVMDLDRLGRGDMKDQGIILETFKESKTKIITPRKTYDLTDEFDEEYSEFEAFMARKELKLISRRMQRGRIKSVEEGNFIGTSAPFGYDAVTTGRKERILVPNKDADVVRTIFDLYINEDMGCSKISKYLNNLGIKTATGANWYNSAITNIIKNKVYCGYIQWQKKDYKKSKNPNKIKTVKLRPKDEWIEAKGKHEPLISEITWKKAQNILKKNGHVSYGNQIKNPLAGIVICKNCGRPLVYRPYADHDYIICYHPGCNKSSRFEFIEAAILKSLEDTVKKYQLKASDIDLDKNNKDSNIEFQKRVLKGLETELKELGKQKNKLYDLLERGIYDEDTFIERSNNISSRTEEIKDSIKTVKNRLNTVKKDNSKIIEDIKTVLSLYHDSDSLGKNKLLKSVIDKAVYYKSKEQKLDSFELMVHLKLHEDQ
>CP012309.1|AXU71174.1|1305915_1306200_-|RNA-polymerase-sigma-27/28-subunit-RpsK/SigK
MCNEISLLDILGTEANYVLDEVELKVQVGKLYEQLNKILTPREREIVQLRYGLTPYGYKTQREIAQKLDISRSYVSRIEKKALKKLEKELVQES
>CP012309.1|AXU71173.1|1304154_1305819_+|penicillin-binding-protein
MSKKKTPFLKKVGKRSWCIFTIILIIYSVLIYRLVDIQVLKGDKYKQSVESQSVEKVELNSGRGIIYDRNNKKLTDTSKSQVLIVEKEKLNNNYKILELIKKATKMNDLDIYKAVQEQLTRPIIQIQTKNIDKSMKKELEKNGIMVEEKTMRYAKDGLLSHTIGYIKEDDKSGQSGIEKSMDSVLRNSNEKYISAFKAGDAGNEKSLNILKGSVKTVDNKDKDRHLKTTIDYNIQKKLEQILNKEENPTAAIISEASTGEILAMCSRPNFDQNDISKSLKGKNGEFENRVIKATYPPGSVFKMVVLFSALENGVIDENYTYNCTGKTKVGNTNEILRCNKRDGHGFQNLRQAFSNSCNPAFLDIAMKLGKEKILKSAEKLHLFEKVDIGLDEEKIREAPKNISIRNLAIGQENIEFTPLQINQMTQIIANNGTFKPLYLYKSLVDNNMNTIKTYKSSKKEELISPYVCTQVKEYMKSVSRTGTAKDLKDIEGGCGVKTGTAQSSLNKKAIDHGWITGFYPEERPKYVITVLVEGTQKGNKSATPIFKEICESIK
>CP012309.1|AXU71172.1|1302835_1304083_+|protease
MELNKVELLAPAGDLERLKIAITYGADAVYIGGEIFGMRSAAKNFSKEDMAEGVAFAHERGKKVFVTVNIIPHNEDFLQLEDYLLELEEIGIDAVIIADPGVLSVIKKVIPNMEIHLSTQANTTNYLSANFWYEHGIKRVVVARELSFDEISEIRAKTPLDMDIEAFMHGAMCISYSGRCLISNYMTGRDANKGSCAQSCRWQYHLVEEKRPGEYFPIYEDERGTFFFNSKDLCMIEYIPELIKSGITSLKIEGRMKTAYYVATVVRAYRMAIDEFYRDPENWKFNPMWMEELKKGSHRHFTSGFYLNKPTTEDQNYQSASYVRNYDFIGIVRETEDEDGLIVVEQRNKMCVGDEIEVMGPYKETMFTKIEEMYNEEGEAIESAPHPRQIVKLKLSVKVGKDYMLRKVIEEKVEE
>CP012309.1|AXU71171.1|1302174_1302849_+|O-methyltransferase
MSNIVNDLVEDYIRVTLKEKEGFLKDLEIYAEENSVPIIHKEVSDLLKVLLKVQKPKRILEVGCAIGYSSIFFATIIGKDADIITVERNEKMIEKAKENIKLAGFDNNITILEGDAEEKLSQVQGEFDLIFIDAAKGQYKLFFDLVIDKLKDGGLLVSDNILYKGMVAHDDFVVRRKKTIVKRMRNYLDYICNCDYLSTSLVPIGDGVALSYKESKRGDVDGIK
>CP012309.1|AXU71170.1|1300923_1302003_+|exported-aminodeoxychorismate-lyase
MNFKENRLKIAVLIIVILIILAGIFVFIQIGPYDKNNKKDVIIDVPNGASVGKISDILYENKLIKNELLFKLLVKVSNKAPSIKSGTYLLNQSYSNNDIISLLVSGKIYQDGIKVTIPEGATSKEIIAMLVSKNLGDKATFENLIKKPQEFYDKFSYLKEDGITSLEGFLYPETYYFNSKKQSEEDILSEMLKVFDSKYTDKFKKKQKELNMTLQEVMEMASIIEKEAVLDKDRPIIASVFYNRLKVGMPLQSDATIQYIFEERKKIVTYDDLKIDSPYNSYKNKGLPPTPISNPGIKSIEAALYPEKTDYLYFVAKIDGGNNYSTNYQDHLKYVKEYKEARDKQSKDTKATNKENTKK
>CP012309.1|AXU71169.1|1299385_1300711_+|pyrimidine-nucleoside-phosphorylase
MRMYDIIKKKRDNLELSKKEINYFIENYSKGDIPDYQASALLMSIYLNKMNKQETVHLTEAMMNSGDMINLSEIDGIKVDKHSTGGVGDKTTIALIPLVASCGAPVAKMSGRGLGHTGGTIDKLESIPGFSTEMEISKFIDSVNKSKIAVCGQSAKVAIADKKIYALRDVTATVDNISLISSSVMSKKLASGADAIVLDVKTGDGAFMKTLEESFELAKSMVDIGTGMNRDTIGIVTDMDEPLGFAVGNSLEVIEAIETLKGNGPKDLVELCEVLGAYMLVLSKVAHDFEDGVEKIRESIKSGTAIQKLKEFIENQGGNKDVVDDYSLFKKSKYKYPVKSTKSGYISKIKAEDVGVSAMILGAGRETKDDILDLSAGIILEKKVGDYVNEGEVLAYMYYNDEQKLSLAKGRFIDSYSIVDSKIEKNKLIYGIVTKEEIKKF
>CP012309.1|AXU71168.1|1298369_1299182_+|purine-nucleoside-phosphorylase
MFEKIAQSSKFINSKSNIKPKIGLILGSGLGDLANDIEDPVTIKYSEIPNFPVSTVAGHAGQLVIGKLEGKEVIAMQGRFHYYEGYSQKEATFPVRVMKELGVEILIVTNAAGGVNKEFKAGDLMLIRDHINFSGSNPLVGKNDDRFGARFPDMSDAYSSKYVDVVKNCAKECNIDVKEGVYMFFSGPNYETPAEVRMAQILGADAVGMSTVPEVIVASHSNIGVIGISCITNMAAGILNQPLSHEEVIETTQKVKSEFMNLVKTTVKNL
>CP012309.1|AXU71178.1|1312296_1312521_-|putative-transcriptional-regulator
MDVNQRIKYIRENMNSSQKELLEKTNINTSVMNRIESGERPTRDDGLIIFAKIFGLYTDYILGLSDTEKLNIGN
>CP012309.1|AXU71179.1|1313199_1313355_+|phage-anti-repressor
MALEVKIEVKIIKDVVILNITHWKKETSLLTVKIARGQGDLSYVKYFTNES
>CP012309.1|AXU71180.1|1313600_1313852_+|hypothetical-protein
MSSYFITRGDVMKILQQFKPYKYDKEKNIEYDEKIIANQNTEVYIVYPRISDEENRRRWEEFNEVAKEVAINIAMKKVETVES
>CP012309.1|AXU71181.1|1314172_1314286_+|hypothetical-protein
MVEVNIKIKGEVSEIIDSIRGIFNSFDEELILDIKSE
>CP012309.1|AXU71182.1|1315071_1315455_-|hypothetical-protein
MRKKFFIGILIVLIISVIAILNIKNDKNVFIGESENWKAKFVTTEGHSKLEIKYKNSKDVVEQKFNYSYQFIDGEDAVVVVKNEILEAGQEKAIKIQRPGLYSNRESSYKLIISWNGNEETIKLKKK
>CP012309.1|AXU71183.1|1315581_1315926_+|hypothetical-protein
MNYRLKKSVTTILSLLIMTILLPTNASASKVEDSSMKVMYSEKQVTDMDKLYDMAKNGITDVKSSNEKGIIKNARTGESIYVDSISTTQLLEVKQSKNLTSKIYSKTVFLILIQ
>CP012309.1|AXU71184.1|1317309_1317627_-|hypothetical-protein
MNFRNIYLILMGLGIIILTTIISLIEIKIGFCNEKYFNKLESKYGNIDRKRTIKLEVLYRYVTGFEYIAIGLFTKRLDITIIAIILVATITVILYYLVRKRYITI
>CP012309.1|AXU71185.1|1317940_1318510_-|hypothetical-protein
MKLRNPKIKKLLSVALLAALIGIPIGQTANAMEISNNVPSYIENNPTTIEDLEINDSQLPKPGTVTYIDINKLIKNLKENGIDTTLIENELYYRKAGTNKIVWTKTGFDLYLSKGVALTLAGAGTGVAGLLAGAIPGIGQYLAAAIVGAITMHLGSNITSGKIFKFKKMRYNKGGAYVTKYYLQSVRNQ
>CP012309.1|AXU71186.1|1318952_1319096_+|regulatory-protein
MKINKLPHAELKLMKYIWGVDDVLASRDIIEDMKLKYDWKKSTTLTF
>CP012309.1|AXU71187.1|1319661_1320171_+|teicoplanin-resistance-protein
MKSRKHNITKGLFIVYIIILTWIILFKLQFDISSLETMNLRSINLVPFAGSLIINNRVDISEIILNVAIFVPFGIYVCMLKEEWSFIKKVIPIFITSLAFETLQYIFALGASDITDLIGNTLGGIIGIAVFMLLSKIFKNNTIKIINVLALIVTIIVVLFLGLVIFANL

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Crispr_ID: CP012309_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_8

1523898-1526179

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTAAGTGGTATGTAAAT	PILER-CR
GTTTTATATTAACTAAGTGGTATGTAAAT	CRISPRCasFinder
GTTTTATATTAACTAAGTGGTATGTAAAT	CRT

34 spacers

The CRISPR arrays of CP012309_8

>merge|CP012309|8|1523898-1526179|PILER-CR,CRISPRCasFinder,CRT
GTTTTATATTAACTAAGTGGTATGTAAATCAACCAAAAACTTCGAATTTGAACTAAAATGCGTGGGGTTTTATATTAACTAAGTGGTATGTAAATTCGCACTTATTGGGATTAAATTCAACAACAATATCAAGTTTTATATTAACTAAGTGGTATGTAAATGTTGGATTGATGCAAAAGTTTCTTATACAGCTCTTAAGTTTTATATTAACTAAGTGGTATGTAAATAAAATTGGAAAATCAAAAGAAGGACAAACTGGTTCAACGTTTTATATTAACTAAGTGGTATGTAAATAAAATCAAAGGCAACATCATAGTCACGTATATTATCGTTTTATATTAACTAAGTGGTATGTAAATAAAAAACAAGAAACTAAGGAATCAATAGCAGAGAAAGTTTTATATTAACTAAGTGGTATGTAAATTTAAATTCAGAAGAACAGGAGGTATTTAATAGTATTAGTTTTATATTAACTAAGTGGTATGTAAATATAGTTGTTTTTACTCCTGTTATATCTGTTTCTATAGTTTTATATTAACTAAGTGGTATGTAAATTGATTGGGTTTATAAACAAATACCAAGATGGTTTAACTAGTTTTATATTAACTAAGTGGTATGTAAATGTTCCTGCTCCTGTTCCTGTACCGGGTTGATTACCTGGTTTTATATTAACTAAGTGGTATGTAAATTATTTTCCATAAACATTTCTAATTGACTTTTATTATTTGTTTTATATTAACTAAGTGGTATGTAAATAAGGAAACTTTTTTATGAATGTTGAACCGGACGACGAGTTTTATATTAACTAAGTGGTATGTAAATTAGTCAAATATTAAGTTTTGAGAGGGAAATCTTTATTTGTTTTATATTAACTAAGTGGTATGTAAATTTATTATATATCTGTTTTGACTTAGCACTATTCTTATAGTTTTATATTAACTAAGTGGTATGTAAATCAAAAGAATTATTATTATTGAAAGAAATAGTGTTTTGTTTTATATTAACTAAGTGGTATGTAAATATGACTAAAATCATAGAAAAAGCACTAGAACCAGCTAAGGGGTTTATATTAACTAAGTGGTATATAAATTCAATAATAAGCTTTCCTATTCTTTTTTCTTCACAAGTTTTATATTAACTAAGTGGTATGTAAATCAACCAAAAACTTCGAATTTGAACTAAAATGCGTGGGGTTTTATATTAACTAAGTGGTATGTAAATTCGCACTTATTGGGATTAAATTCAACAACAATATCAAGTTTTATATTAACTAAGTGGTATGTAAATGTTGGATTGATGCAAAAGTTTCTTATACAGCTCTTAAGTTTTATATTAACTAAGTGGTATGTAAATAAAATTGGAAAATCAAAAGAAGGACAAACTGGTTCAACGTTTTATATTAACTAAGTGGTATGTAAATAAAATCAAAGGCAACATCATAGTCACGTATATTATCGTTTTATATTAACTAAGTGGTATGTAAATAAAAAACAAGAAACTAAGGAATCAATAGCAGAGAAAGTTTTATATTAACTAAGTGGTATGTAAATTTAAATTCAGAAGAACAGGAGGTATTTAATAGTATTAGTTTTATATTAACTAAGTGGTATGTAAATATAGTTGTTTTTACTCCTGTTATATCTGTTTCTATAGTTTTATATTAACTAAGTGGTATGTAAATTGATTGGGTTTATAAACAAATACCAAGATGGTTTAACTAGTTTTATATTAACTAAGTGGTATGTAAATGTTCCTGCTCCTGTTCCTGTACCGGGTTGATTACCTGGTTTTATATTAACTAAGTGGTATGTAAATTATTTTCCATAAACATTTCTAATTGACTTTTATTATTTGTTTTATATTAACTAAGTGGTATGTAAATAAGGAAACTTTTTTATGAATGTTGAACCGGACGACGAGTTTTATATTAACTAAGTGGTATGTAAATTAGTCAAATATTAAGTTTTGAGAGGGAAATCTTTATTTGTTTTATATTAACTAAGTGGTATGTAAATTTATTATATATCTGTTTTGACTTAGCACTATTCTTATAGTTTTATATTAACTAAGTGGTATGTAAATCAAAAGAATTATTATTATTGAAAGAAATAGTGTTTTGTTTTATATTAACTAAGTGGTATGTAAATATGACTAAAATCATAGAAAAAGCACTAGAACCAGCTAAGGGGTTTATATTAACTAAGTGGTATATAAATAGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAAATTTTACATTAACTAAAATGTATAGAATA

>CP012309|8|2|1523898-1526113|PILER-CR
GTTTTATATTAACTAAGTGGTATGTAAAT	CAACCAAAAACTTCGAATTTGAACTAAAATGCGTGGG
GTTTTATATTAACTAAGTGGTATGTAAAT	TCGCACTTATTGGGATTAAATTCAACAACAATATCAA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTGGATTGATGCAAAAGTTTCTTATACAGCTCTTAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATTGGAAAATCAAAAGAAGGACAAACTGGTTCAAC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATCAAAGGCAACATCATAGTCACGTATATTATC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAAAACAAGAAACTAAGGAATCAATAGCAGAGAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTAAATTCAGAAGAACAGGAGGTATTTAATAGTATTA
GTTTTATATTAACTAAGTGGTATGTAAAT	ATAGTTGTTTTTACTCCTGTTATATCTGTTTCTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	TGATTGGGTTTATAAACAAATACCAAGATGGTTTAACTA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTCCTGCTCCTGTTCCTGTACCGGGTTGATTACCTG
GTTTTATATTAACTAAGTGGTATGTAAAT	TATTTTCCATAAACATTTCTAATTGACTTTTATTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	AAGGAAACTTTTTTATGAATGTTGAACCGGACGACGA
GTTTTATATTAACTAAGTGGTATGTAAAT	TAGTCAAATATTAAGTTTTGAGAGGGAAATCTTTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	TTATTATATATCTGTTTTGACTTAGCACTATTCTTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	CAAAAGAATTATTATTATTGAAAGAAATAGTGTTTT
GTTTTATATTAACTAAGTGGTATGTAAAT	ATGACTAAAATCATAGAAAAAGCACTAGAACCAGCTAAGG
GGTTTATATTAACTAAGTGGTATATAAAT	TCAATAATAAGCTTTCCTATTCTTTTTTCTTCACAA
GTTTTATATTAACTAAGTGGTATGTAAAT	CAACCAAAAACTTCGAATTTGAACTAAAATGCGTGGG
GTTTTATATTAACTAAGTGGTATGTAAAT	TCGCACTTATTGGGATTAAATTCAACAACAATATCAA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTGGATTGATGCAAAAGTTTCTTATACAGCTCTTAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATTGGAAAATCAAAAGAAGGACAAACTGGTTCAAC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATCAAAGGCAACATCATAGTCACGTATATTATC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAAAACAAGAAACTAAGGAATCAATAGCAGAGAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTAAATTCAGAAGAACAGGAGGTATTTAATAGTATTA
GTTTTATATTAACTAAGTGGTATGTAAAT	ATAGTTGTTTTTACTCCTGTTATATCTGTTTCTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	TGATTGGGTTTATAAACAAATACCAAGATGGTTTAACTA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTCCTGCTCCTGTTCCTGTACCGGGTTGATTACCTG
GTTTTATATTAACTAAGTGGTATGTAAAT	TATTTTCCATAAACATTTCTAATTGACTTTTATTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	AAGGAAACTTTTTTATGAATGTTGAACCGGACGACGA
GTTTTATATTAACTAAGTGGTATGTAAAT	TAGTCAAATATTAAGTTTTGAGAGGGAAATCTTTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	TTATTATATATCTGTTTTGACTTAGCACTATTCTTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	CAAAAGAATTATTATTATTGAAAGAAATAGTGTTTT
GTTTTATATTAACTAAGTGGTATGTAAAT	ATGACTAAAATCATAGAAAAAGCACTAGAACCAGCTAAGG
GGTTTATATTAACTAAGTGGTATATAAAT

>CP012309|8|7|1523898-1526179|CRISPRCasFinder
GTTTTATATTAACTAAGTGGTATGTAAAT	CAACCAAAAACTTCGAATTTGAACTAAAATGCGTGGG
GTTTTATATTAACTAAGTGGTATGTAAAT	TCGCACTTATTGGGATTAAATTCAACAACAATATCAA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTGGATTGATGCAAAAGTTTCTTATACAGCTCTTAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATTGGAAAATCAAAAGAAGGACAAACTGGTTCAAC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATCAAAGGCAACATCATAGTCACGTATATTATC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAAAACAAGAAACTAAGGAATCAATAGCAGAGAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTAAATTCAGAAGAACAGGAGGTATTTAATAGTATTA
GTTTTATATTAACTAAGTGGTATGTAAAT	ATAGTTGTTTTTACTCCTGTTATATCTGTTTCTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	TGATTGGGTTTATAAACAAATACCAAGATGGTTTAACTA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTCCTGCTCCTGTTCCTGTACCGGGTTGATTACCTG
GTTTTATATTAACTAAGTGGTATGTAAAT	TATTTTCCATAAACATTTCTAATTGACTTTTATTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	AAGGAAACTTTTTTATGAATGTTGAACCGGACGACGA
GTTTTATATTAACTAAGTGGTATGTAAAT	TAGTCAAATATTAAGTTTTGAGAGGGAAATCTTTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	TTATTATATATCTGTTTTGACTTAGCACTATTCTTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	CAAAAGAATTATTATTATTGAAAGAAATAGTGTTTT
GTTTTATATTAACTAAGTGGTATGTAAAT	ATGACTAAAATCATAGAAAAAGCACTAGAACCAGCTAAGG
GGTTTATATTAACTAAGTGGTATATAAAT	TCAATAATAAGCTTTCCTATTCTTTTTTCTTCACAA
GTTTTATATTAACTAAGTGGTATGTAAAT	CAACCAAAAACTTCGAATTTGAACTAAAATGCGTGGG
GTTTTATATTAACTAAGTGGTATGTAAAT	TCGCACTTATTGGGATTAAATTCAACAACAATATCAA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTGGATTGATGCAAAAGTTTCTTATACAGCTCTTAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATTGGAAAATCAAAAGAAGGACAAACTGGTTCAAC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATCAAAGGCAACATCATAGTCACGTATATTATC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAAAACAAGAAACTAAGGAATCAATAGCAGAGAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTAAATTCAGAAGAACAGGAGGTATTTAATAGTATTA
GTTTTATATTAACTAAGTGGTATGTAAAT	ATAGTTGTTTTTACTCCTGTTATATCTGTTTCTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	TGATTGGGTTTATAAACAAATACCAAGATGGTTTAACTA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTCCTGCTCCTGTTCCTGTACCGGGTTGATTACCTG
GTTTTATATTAACTAAGTGGTATGTAAAT	TATTTTCCATAAACATTTCTAATTGACTTTTATTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	AAGGAAACTTTTTTATGAATGTTGAACCGGACGACGA
GTTTTATATTAACTAAGTGGTATGTAAAT	TAGTCAAATATTAAGTTTTGAGAGGGAAATCTTTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	TTATTATATATCTGTTTTGACTTAGCACTATTCTTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	CAAAAGAATTATTATTATTGAAAGAAATAGTGTTTT
GTTTTATATTAACTAAGTGGTATGTAAAT	ATGACTAAAATCATAGAAAAAGCACTAGAACCAGCTAAGG
GGTTTATATTAACTAAGTGGTATATAAAT	AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA
ATTTTACATTAACTAAAATGTATAGAATA

>CP012309|8|3|1523898-1526113|CRT
GTTTTATATTAACTAAGTGGTATGTAAAT	CAACCAAAAACTTCGAATTTGAACTAAAATGCGTGGG
GTTTTATATTAACTAAGTGGTATGTAAAT	TCGCACTTATTGGGATTAAATTCAACAACAATATCAA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTGGATTGATGCAAAAGTTTCTTATACAGCTCTTAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATTGGAAAATCAAAAGAAGGACAAACTGGTTCAAC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATCAAAGGCAACATCATAGTCACGTATATTATC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAAAACAAGAAACTAAGGAATCAATAGCAGAGAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTAAATTCAGAAGAACAGGAGGTATTTAATAGTATTA
GTTTTATATTAACTAAGTGGTATGTAAAT	ATAGTTGTTTTTACTCCTGTTATATCTGTTTCTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	TGATTGGGTTTATAAACAAATACCAAGATGGTTTAACTA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTCCTGCTCCTGTTCCTGTACCGGGTTGATTACCTG
GTTTTATATTAACTAAGTGGTATGTAAAT	TATTTTCCATAAACATTTCTAATTGACTTTTATTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	AAGGAAACTTTTTTATGAATGTTGAACCGGACGACGA
GTTTTATATTAACTAAGTGGTATGTAAAT	TAGTCAAATATTAAGTTTTGAGAGGGAAATCTTTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	TTATTATATATCTGTTTTGACTTAGCACTATTCTTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	CAAAAGAATTATTATTATTGAAAGAAATAGTGTTTT
GTTTTATATTAACTAAGTGGTATGTAAAT	ATGACTAAAATCATAGAAAAAGCACTAGAACCAGCTAAGG
GGTTTATATTAACTAAGTGGTATATAAAT	TCAATAATAAGCTTTCCTATTCTTTTTTCTTCACAA
GTTTTATATTAACTAAGTGGTATGTAAAT	CAACCAAAAACTTCGAATTTGAACTAAAATGCGTGGG
GTTTTATATTAACTAAGTGGTATGTAAAT	TCGCACTTATTGGGATTAAATTCAACAACAATATCAA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTGGATTGATGCAAAAGTTTCTTATACAGCTCTTAA
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATTGGAAAATCAAAAGAAGGACAAACTGGTTCAAC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAATCAAAGGCAACATCATAGTCACGTATATTATC
GTTTTATATTAACTAAGTGGTATGTAAAT	AAAAAACAAGAAACTAAGGAATCAATAGCAGAGAAA
GTTTTATATTAACTAAGTGGTATGTAAAT	TTAAATTCAGAAGAACAGGAGGTATTTAATAGTATTA
GTTTTATATTAACTAAGTGGTATGTAAAT	ATAGTTGTTTTTACTCCTGTTATATCTGTTTCTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	TGATTGGGTTTATAAACAAATACCAAGATGGTTTAACTA
GTTTTATATTAACTAAGTGGTATGTAAAT	GTTCCTGCTCCTGTTCCTGTACCGGGTTGATTACCTG
GTTTTATATTAACTAAGTGGTATGTAAAT	TATTTTCCATAAACATTTCTAATTGACTTTTATTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	AAGGAAACTTTTTTATGAATGTTGAACCGGACGACGA
GTTTTATATTAACTAAGTGGTATGTAAAT	TAGTCAAATATTAAGTTTTGAGAGGGAAATCTTTATTT
GTTTTATATTAACTAAGTGGTATGTAAAT	TTATTATATATCTGTTTTGACTTAGCACTATTCTTATA
GTTTTATATTAACTAAGTGGTATGTAAAT	CAAAAGAATTATTATTATTGAAAGAAATAGTGTTTT
GTTTTATATTAACTAAGTGGTATGTAAAT	ATGACTAAAATCATAGAAAAAGCACTAGAACCAGCTAAGG
GGTTTATATTAACTAAGTGGTATATAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU71379.1\|1529353_1531588_-\|signaling-protein	unknown	unknown	gnl\|CDD\|238923
CP012309.1\|AXU71370.1\|1515855_1516791_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
CP012309.1\|AXU71371.1\|1516910_1517459_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71381.1\|1533325_1533565_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71384.1\|1535310_1535865_-\|isochorismatase	unknown	unknown	gnl\|CDD\|238496
CP012309.1\|AXU71377.1\|1526504_1528238_-\|signaling-protein	unknown	unknown	gnl\|CDD\|143635
CP012309.1\|AXU71382.1\|1533735_1533912_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71372.1\|1517610_1518039_+\|EamA-like-transporter-family-protein	unknown	unknown	gnl\|CDD\|377396
CP012309.1\|AXU71385.1\|1535942_1536308_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP012309.1\|AXU71378.1\|1528477_1529323_-\|signaling-protein	unknown	unknown	gnl\|CDD\|143635
CP012309.1\|AXU71376.1\|1522393_1522639_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71373.1\|1518123_1518774_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|238952
CP012309.1\|AXU71369.1\|1514646_1515591_+\|membrane-protein	unknown	unknown	gnl\|CDD\|273359
CP012309.1\|AXU71368.1\|1512898_1514329_-\|sigma-54-dependent-regulatory-protein	unknown	unknown	gnl\|CDD\|226350
CP012309.1\|AXU71380.1\|1532371_1533181_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
CP012309.1\|AXU71374.1\|1518891_1520247_-\|drug/sodium-antiporter	unknown	unknown	gnl\|CDD\|240548
CP012309.1\|AXU71383.1\|1534416_1535091_-\|MgtC/SapB-transporter	unknown	unknown	gnl\|CDD\|224204
CP012309.1\|AXU71375.1\|1520949_1521345_-\|phage-integrase	unknown	unknown	gnl\|CDD\|271189
CP012309.1\|AXU71386.1\|1536538_1536673_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71367.1\|1512114_1512699_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376406

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU71379.1\|1529353_1531588_-\|signaling-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	5.26193e-92
CP012309.1\|AXU71370.1\|1515855_1516791_-\|radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	8.9682e-180
CP012309.1\|AXU71384.1\|1535310_1535865_-\|isochorismatase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	7.05889e-56
CP012309.1\|AXU71377.1\|1526504_1528238_-\|signaling-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.19363e-46
CP012309.1\|AXU71372.1\|1517610_1518039_+\|EamA-like-transporter-family-protein	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	2.2504e-17
CP012309.1\|AXU71385.1\|1535942_1536308_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	2.42498e-24
CP012309.1\|AXU71378.1\|1528477_1529323_-\|signaling-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.16166e-29
CP012309.1\|AXU71373.1\|1518123_1518774_+\|ATP-binding-protein	gnl\|CDD\|238952	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.	2.2293e-55
CP012309.1\|AXU71369.1\|1514646_1515591_+\|membrane-protein	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.76118e-26
CP012309.1\|AXU71368.1\|1512898_1514329_-\|sigma-54-dependent-regulatory-protein	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	8.17105e-137
CP012309.1\|AXU71380.1\|1532371_1533181_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	5.47567e-25
CP012309.1\|AXU71374.1\|1518891_1520247_-\|drug/sodium-antiporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	6.88958e-115
CP012309.1\|AXU71383.1\|1534416_1535091_-\|MgtC/SapB-transporter	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	3.83314e-54
CP012309.1\|AXU71375.1\|1520949_1521345_-\|phage-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.24346e-06
CP012309.1\|AXU71367.1\|1512114_1512699_-\|hypothetical-protein	gnl\|CDD\|376406	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C.	9.21275e-20

>CP012309.1|AXU71376.1|1522393_1522639_-|hypothetical-protein
MNQKKIKISIKMVIIGIFAVIIAFVLSRLFVEYIDELLRSNWQYQLFESESSYIVFANCIMFSNILLEIFLIYICRKFRKI
>CP012309.1|AXU71375.1|1520949_1521345_-|phage-integrase
MIKNQIEVFFKDMKLIDITPSILQSYINNIYNEHMLNSTKNQVDFIKSVLKESYRLKEISENICDFVTTPIKKNSSTSKLYTKQKAQLLLEKSKNIPIGIPIFLMLTLGLRFGEAVSLIWSDVDLDKKSHM
>CP012309.1|AXU71374.1|1518891_1520247_-|drug/sodium-antiporter
MDTKISINENMSLGKRFFKYLAPSVVAMWVFSLYTMVDGIFVSKGVGELALAAVNISMPFINFIFAVSLLFSTGASTIIAIYLGKKDIKSANEVFSFNLVSIIILSIIILAITFFNLDRLALFLGATESTIGMVKDYLGIIIFFNGFFIVSYSLEVIIKTDGFPILATVGVIISALTNIILDYLFVIEFGWGVKGAGIATGLSQVFSTIFFLIHFLRKNSTLNFSKFRIDFKTLRKIVFIGFPDSTTELSCGIVVLLFNLSLTKYIGENALIYYSVINYINTLVLMTMMGITQGMQPLTSFYYGAGNIDNVKKLLKMGIKATIIASVAVFAICMAFSGPIVSLFIHPEETMLFNEGVRVFKIFSISFLLVGINVIISGFFVSVEKPSISTVISLGRGLVIVVLSLISMILIFGGQGIWMTTIVSEFICLILSLVFLKKNFSTLDSNLNKVA
>CP012309.1|AXU71373.1|1518123_1518774_+|ATP-binding-protein
MADEKFVMSFSGGKDSILALNRMLKKGYKPVALLTTISEEHGKSWTHNLEYNMLKQVSSNIGLPLLVAECGVEGYEESFERALIKAKNMGATICAYGDIDIESHRKWDTDRCEAVGMKVDLPLWQESREDLVYEFIDSGFCSVVTKVNLKHLGEEFLGKKLTRELVEKIKNAGADPCGEHGEYHTFVVDGPIFKKPVEYEVKGTLIKDGYGYLEIK
>CP012309.1|AXU71372.1|1517610_1518039_+|EamA-like-transporter-family-protein
MTKLWAIIFALLAGGSTALEAFINGELGKSTTALVATFISLTVGAIFFLASIIVTGDLKCLVSINGFNYKLLLGGVFGGLIIYFTVKAIPNLGVSNTLILTLVSQVLVGFFIDSVILGQETMHLYKYIGVILLILGTFFIVN
>CP012309.1|AXU71371.1|1516910_1517459_-|hypothetical-protein
MYTNFNIDFNNFNKKENAIKFMLMGVLLIILGLLCLTFKTLGIKLISWTFGIALLFFAYLNLKNINELKRYATKEEIKPSINIQWVLIIACILLFVFPQKIQSIFSLFLGFYLIFNQLVALVNSKNNPYSKFTTWNIVKILFGICLILSPLFLSRFIVSIMSFFIILFGLVLFFSGNTARKY
>CP012309.1|AXU71370.1|1515855_1516791_-|radical-SAM-protein
MDKFKYAFDNKRYHTWNYYLRNTFGEKVFKVSINAGFTCPNIDGSLGYGGCTYCSKEGSGDFAGNPKDNLISQFYNIKEMMLKKWPHAKYIGYFQAYTNTYAPLEVLKEKYETILELEDVIGLSISTRPDCLPDDVVEYLSELNKRTNLWVELGLQTIHDSTSKIINRGHDYKTFVEGVEKLKSKNIKVVVHIINGLPGEDYNMMMETAKAVGKMGVDGIKIHLLHVIKDTPMEKMLQNGMLTLMEQDEYINLVCDQLEILPETMIIHRLTGDGKRDELVGPIWSLKKWEILNQIDDTLKARNSYQGCKFV
>CP012309.1|AXU71369.1|1514646_1515591_+|membrane-protein
MGEKSKGYVFIAIAGLLWATLGLFGKFLMGNGLTSEQVAFTRLFFGFIVLGVYSSIRTPQILKISKKGIMYSVIIGIICQAMFNLCYFKAIDIAGVSIAAVLLYTSPLFLAIFSKICYKENITRSKLFSLILCFIGAIMAVTGGRLDFQGLNAFGLLLGVLSAIAYALMPTISKNALKEFSSSTILVYSFLFGAIFMIPSSRPWEILNYAKDLDVLSCMLMLGIVPAALAYIFYAAGISKGVELSVAGVVASVELVGSVIIGCTILGESFSLGKLFGVMLMLISAVVALNLSYDEIRIFYKSNKLKQIEKTESI
>CP012309.1|AXU71368.1|1512898_1514329_-|sigma-54-dependent-regulatory-protein
MNLDLEFYQKILEASHDEICVSDDKGIIIYCNKAFEENYGLKKEDILGKNVSFLEDSGYSTKSPIPIVLKTKTKFSLEQDTQTGKKLIITATPIFDENGHLEFTVENCRDITELNNIKNKLEDTKKQVKKYKSEVETLYRTALRIEDTVIMDGIVMRPIINTVNHVSKTDVSVLLLGESGTGKSSLARYIHHNSNRSNGPFITINCATISPQLLESELFGYTSGAFTGASTKGKVGLVELANGGTLFLDEIGDIPQNLQAKFLQLIQDRTFTPVGSLKNKKVDIRIISATNVDLVSKVKEKKFREDLYYRLNVIEIKLPPLRERRDNLVEIIKYYFNRYSSDFNLNKTISKEAMDAIANYRFPGNIRELQNIIQKILLTCTDNHITIDDLPNILTKNIHITNNGNKTHISQINKVIISDSKSTNYKNKNFDTLIKEYEKNIILDAYEKFGSSYKVAKHLEISQSKANRLIRKYTNT
>CP012309.1|AXU71367.1|1512114_1512699_-|hypothetical-protein
MLMNTHFIMAKSILDNIDENKTFFISEKNFIYGNIKPDAFSKYKLKKHYLDESFNMIVSKINYLCSLNIDSLSKYFSVSRLSQELGVICHFLCDFFCVAHSERWEFKHSLNKHVTYERELGAFAKDVDLSKIKCGTINSSFEKFFTKLYSDYKKKTDYMNDLKFSAYTCNSVINYILDSILSNTIKSYHIANCG
>CP012309.1|AXU71377.1|1526504_1528238_-|signaling-protein
MSILLKKAPKLAKHIITSFYINRDINEVLKYLCENVTWIGPGEQEFLTSFNEIKNYFYAGQDEIPSCDINNDIFETVSEDENRCMVLGRYTVRTKENAQMILEVNQRCTFEIIEDRGKLLIKHMHISNPYGEMQLDEYFPTKIGTQSYDYLQRLLKEKTEVIEMITNNINGGLKGSNDDSTYSFFYVNEGLPKILGYTYNEFMEMSGGSAVGAVYPPDLPKALEDCERCFAKGPTYSSEYRIRKKDGTLMWVLDSGMKSLNSDGIVKINSIITDITQLKNIESELKLERERYRIALQNITDIMFEYDIENDTLIKYQRVEIDKKIELENFETKNYSKLLESGKIIHLDDIGKLLEVLHGNLRETIEIRQVNSLTKNEWRWIRVQCSVIYDSDHNPIKTIGVLKDITEDKSKLESLINQAQRDPLTQLYNQRVSQNLIEEYLCSSDSKNNDALLVIDIDDFKTVNDTFGHLEGNEVLVAVSKILLHNTHDKDIVARIGGDEFTIFIKSLTKDLIIKITNDILNDASKIKVKDNHKITLSIGIAFTDDSTKLYKDLFSKADKALYLSKADGKNCYSTYE
>CP012309.1|AXU71378.1|1528477_1529323_-|signaling-protein
MFKEIFLRTFPGFLIIRDSNYRIIFINDNLKNLIKSYMQDNPLGMTNIEIAKKLPDNIAKFFTDSHNIQLDWEKNYPYDKISNWILEFKKDTTSYWNVLEYKVDVDEKTYIITMANDITKLYEENKRNLHYSITDPLTGAYNRKYLNDRFDIFIGDYIVLIDLDNFKMINDYEGHNVGDKILCDFVSLLNKELINSTSIIRLGGDEFIVIFSSDVDKNYVYSQLEALRENFLKVFSKYKYLSFSYGVDTVKRNLKLTIVELDKKMYKNKEKNKKKFDKNDY
>CP012309.1|AXU71379.1|1529353_1531588_-|signaling-protein
MQNHNYIKMLNKKVEVLSKELDSRNFKLKTLNEIDFFSKIPNREFMYQHIDDCISKNIHIGIMLLNIDNFKLFNDIYGYLVGENLLITLTQNLLHFIPESKGIVAYLKGEGFLIVLPNVSNKELNNMGATIIESARELKIRLPNEKEIYSNVTFSIGSTIWNGEPNMTTLMLFNQVYSALKKAKSEGKNRYILFDFKDNSFYNKLENDKEFLSEISHVLQTKQIEVFYQPLYNIKNNTIVGCEALARWRHPIKGLLTPDKFIPLFEQFGLITELDLHLFEENCKNIRRWIDNNDVFVPICCNFSRLHFFNPNFPSMLKGITEKYSVSTSNFSIEITENILIENTNTIIQQLAELRSYGFSVSMDDFGSGYSSFGMLQNLPFDIIKIDRIFLSHNLNDFKNTTILYSIINIARALGMLTVCEGVETEQHVEFIKSINCDIAQGYYYAKPMECKEFEKLLSKENNSEKMFIKYSDIGKSLIEKIFDGFFIMQDMKKLRANVTEDIQWFDFYNKTEITSFPKVIDHFEKHIKGKKFSILYKSITPHNTESDSLLISGEAVLSDEASEHQKYSNFYFSANCIISENKLLLAKLHLDLIKTAGYINEFESYSIPKMTNTHLDESNILSQFYSMLPVGIIRYDLFGDMIITYMNEEMFDIIGYTKEQFFGEMGGNLRAIVHPDDLDFVYKKSLDMIDTNKIEPFLYRFIKRDGQIVTVMYTQCNLSAIDGRSIAQGMYVDVNKIKNLTKI
>CP012309.1|AXU71380.1|1532371_1533181_+|MerR-family-transcriptional-regulator
MKDYYKIGEISKIYGIGRDSLMYYEEIGILRPVRDINGYRMYNISDIWKLNLIKEFRSLNFPMKKIKEYLDDRSIESTKNILNEELDLIDKKIAEFISHKENIIKRLSSIESVIQNTKIDEIEVVYIEKRKALELNADIKRDEDFDFLIQKLQKEYEDRFNILGNNNIGSAFSTEAINKGIFNEFKSVFCFLESNEKVYNIVFDEGYYVTLNYTGSNSNNKIYMEKVFKFIEENNYKIIADPIEIYKIDIHETGIVEEFVTEIQVPITK
>CP012309.1|AXU71381.1|1533325_1533565_+|hypothetical-protein
MKCSNCGSVNIEKGILTTGGIYAETIGLKYRGDGKLDKVINKTFPVQSTIYSDLCLDCGEIVRTYIKDNTDRNWCKDKK
>CP012309.1|AXU71382.1|1533735_1533912_-|hypothetical-protein
MFRDEMDKCTHMLTAYISSLYDYCDFIDTQLDDFILEYGENVVESCLHQVMVLVSKYN
>CP012309.1|AXU71383.1|1534416_1535091_-|MgtC/SapB-transporter
MNHHILIQFEYIARIITAGFCGALIGYERKNRLKEAGIRTHFIVALASALIIIVSKYGFNDIVGTPGIGLDPARVAAQVVSGIGFLGAGLIFIRNQSVSGLTTAAGIWATAGTGLAIGSGLYLVGIVSSIIIVIVQITLHRDRKWMKLPTAEQVSLKISNSPDSIEYIEGKFKKSNIEIINMNIKRLDGDWLEVVIYTKLPKGYKKTNLLKLFSDNPLIETLEI
>CP012309.1|AXU71384.1|1535310_1535865_-|isochorismatase
MSIALILIDIQNDYFKNGKCELFQSEETAKNAKKILLFFRKNNLPVIHIQHISTDKTASFFLPNTHGSEINKIVFPLDNEEIIIKHTPDSFFETDLQSILEKKNITNLVICGMMSHMCIDTSVRTAKKLRYDITLISDACTTKNLSWNNIEINANTVHQVFMASLQNSFADVKNTDKFLSNYYK
>CP012309.1|AXU71385.1|1535942_1536308_-|transcriptional-regulator
MKIRAEYTCPLEIVHDIIKGKWKTILIFELRQSNKTFSELQHNIYGINQKMLIQQLKELRDFGIIDKISSTGYPLHVEYFLTNRGKKMLKAVEIMQEIGIEYMLEHGQQEILDNKGICYNK
>CP012309.1|AXU71386.1|1536538_1536673_+|hypothetical-protein
MNISRKAMKIIELAQKIANKRGISVEEAWSEAVTEYKNKYEHIA

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Crispr_ID: CP012309_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_9

1637482-1638629

TypeV

I-A

Consensus_repeat	Method
GTTTTATATTAACTATATGGAATGTAAAT	CRISPRCasFinder
GTTTTATATTAACTATATGGAATGTAAAT	CRT

17 spacers

The CRISPR arrays of CP012309_9

>merge|CP012309|9|1637482-1638629|CRISPRCasFinder,CRT
GTTTTATATTAACTATATGGAATGTAAATCAAATTGCTGACAACACTGAAAGCATTATGAACGCTAGTTTTATATTAACTATATGGAATGTAAATATTGCTCTAGCGATTATGGGTGTTTTTCTTGTTTGGAAGTTTTATATTAACTATATGGAATGTAAATTCAGAATATAATGAACTTGAAGTAAATAAGTTCATGTTTTATATTAACTATATGGAATGTAAATAATAAAAGATGGCTGGGTTTTAATAATTCCTTAAGCGTTTTATATTAACTATATGGAATGTAAATTTGACCTACTTCATCCACTGCACCAGATTCTAATTCTAGTTTTATATTAACTATATGGAATGTAAATATACTTGGTCAATACATTTCAAAAGTTGCAACAGAGTTTTATATTAACTATATGGAATGTAAATGGTGTTAGCCCTAAACCATTTCTAGCACCCGCATACGGTTTTATATTAACTATATGGAATGTAAATTTTAAAAGGTCAACTTAAAGGTAGTAATTTTTTAATAGTTTTATATTAACTATATGGAATGTAAATATATTATCATCATTTAGCAAAGAATTTGCGTATTTTTCGTTTTATATTAACTATATGGAATGTAAATTTTAAAATAAAATATATTTGCCTACCATCAACTGAAGGTTTTATATTAACTATATGGAATGTAAATGGTGGTAGTGGAGAAGCTTCATCAGAAATTACAGCAGGTTTTATATTAACTATATGGAATGTAAATTCAAATATCATTTTTTCAATAATTATTTTCATGTATTGTTTTATATTAACTATATGGAATGTAAATCTTGTCAAGTATCGCCCTGTCAGCTGATTCCATATTAGTTTTATATTAACTATATGGAATGTAAATGTACCAGTTCCACCAACACCGGAGCAGGAACAACCAGTTTTATATTAACTATATGGAATGTAAATTGGTTTGCAAGGTAGCTCTAAAGACACTTGTTTAAGGTTTTATATTAACTATATGGAATATAAATAGCAATTCTGATATTTTTATTCTAATCATTTGAAATCGTTTTATATTAACTATATGGAATGTAAATCCATCTTTTGTTGCTTTACATAAATTTATATTACTTACGTTTTATACTAACTATACAGAATATAATT

>CP012309|9|8|1637482-1638629|CRISPRCasFinder
GTTTTATATTAACTATATGGAATGTAAAT	CAAATTGCTGACAACACTGAAAGCATTATGAACGCTA
GTTTTATATTAACTATATGGAATGTAAAT	ATTGCTCTAGCGATTATGGGTGTTTTTCTTGTTTGGAA
GTTTTATATTAACTATATGGAATGTAAAT	TCAGAATATAATGAACTTGAAGTAAATAAGTTCAT
GTTTTATATTAACTATATGGAATGTAAAT	AATAAAAGATGGCTGGGTTTTAATAATTCCTTAAGC
GTTTTATATTAACTATATGGAATGTAAAT	TTGACCTACTTCATCCACTGCACCAGATTCTAATTCTA
GTTTTATATTAACTATATGGAATGTAAAT	ATACTTGGTCAATACATTTCAAAAGTTGCAACAGA
GTTTTATATTAACTATATGGAATGTAAAT	GGTGTTAGCCCTAAACCATTTCTAGCACCCGCATACG
GTTTTATATTAACTATATGGAATGTAAAT	TTTAAAAGGTCAACTTAAAGGTAGTAATTTTTTAATA
GTTTTATATTAACTATATGGAATGTAAAT	ATATTATCATCATTTAGCAAAGAATTTGCGTATTTTTC
GTTTTATATTAACTATATGGAATGTAAAT	TTTAAAATAAAATATATTTGCCTACCATCAACTGAAG
GTTTTATATTAACTATATGGAATGTAAAT	GGTGGTAGTGGAGAAGCTTCATCAGAAATTACAGCAG
GTTTTATATTAACTATATGGAATGTAAAT	TCAAATATCATTTTTTCAATAATTATTTTCATGTATT
GTTTTATATTAACTATATGGAATGTAAAT	CTTGTCAAGTATCGCCCTGTCAGCTGATTCCATATTA
GTTTTATATTAACTATATGGAATGTAAAT	GTACCAGTTCCACCAACACCGGAGCAGGAACAACCA
GTTTTATATTAACTATATGGAATGTAAAT	TGGTTTGCAAGGTAGCTCTAAAGACACTTGTTTAAG
GTTTTATATTAACTATATGGAATATAAAT	AGCAATTCTGATATTTTTATTCTAATCATTTGAAATC
GTTTTATATTAACTATATGGAATGTAAAT	CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC
GTTTTATACTAACTATACAGAATATAATT

>CP012309|9|4|1637482-1638629|CRT
GTTTTATATTAACTATATGGAATGTAAAT	CAAATTGCTGACAACACTGAAAGCATTATGAACGCTA
GTTTTATATTAACTATATGGAATGTAAAT	ATTGCTCTAGCGATTATGGGTGTTTTTCTTGTTTGGAA
GTTTTATATTAACTATATGGAATGTAAAT	TCAGAATATAATGAACTTGAAGTAAATAAGTTCAT
GTTTTATATTAACTATATGGAATGTAAAT	AATAAAAGATGGCTGGGTTTTAATAATTCCTTAAGC
GTTTTATATTAACTATATGGAATGTAAAT	TTGACCTACTTCATCCACTGCACCAGATTCTAATTCTA
GTTTTATATTAACTATATGGAATGTAAAT	ATACTTGGTCAATACATTTCAAAAGTTGCAACAGA
GTTTTATATTAACTATATGGAATGTAAAT	GGTGTTAGCCCTAAACCATTTCTAGCACCCGCATACG
GTTTTATATTAACTATATGGAATGTAAAT	TTTAAAAGGTCAACTTAAAGGTAGTAATTTTTTAATA
GTTTTATATTAACTATATGGAATGTAAAT	ATATTATCATCATTTAGCAAAGAATTTGCGTATTTTTC
GTTTTATATTAACTATATGGAATGTAAAT	TTTAAAATAAAATATATTTGCCTACCATCAACTGAAG
GTTTTATATTAACTATATGGAATGTAAAT	GGTGGTAGTGGAGAAGCTTCATCAGAAATTACAGCAG
GTTTTATATTAACTATATGGAATGTAAAT	TCAAATATCATTTTTTCAATAATTATTTTCATGTATT
GTTTTATATTAACTATATGGAATGTAAAT	CTTGTCAAGTATCGCCCTGTCAGCTGATTCCATATTA
GTTTTATATTAACTATATGGAATGTAAAT	GTACCAGTTCCACCAACACCGGAGCAGGAACAACCA
GTTTTATATTAACTATATGGAATGTAAAT	TGGTTTGCAAGGTAGCTCTAAAGACACTTGTTTAAG
GTTTTATATTAACTATATGGAATATAAAT	AGCAATTCTGATATTTTTATTCTAATCATTTGAAATC
GTTTTATATTAACTATATGGAATGTAAAT	CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC
GTTTTATACTAACTATACAGAATATAATT

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU71472.1\|1631484_1632333_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
CP012309.1\|AXU71483.1\|1644987_1646196_+\|tyrosyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|237360
CP012309.1\|AXU71485.1\|1647553_1648468_+\|transporter	unknown	unknown	gnl\|CDD\|223769
CP012309.1\|AXU71473.1\|1632351_1633179_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
CP012309.1\|AXU71479.1\|1640229_1642350_-\|ferrous-ion-transport-protein	unknown	unknown	gnl\|CDD\|223447
CP012309.1\|AXU71484.1\|1646256_1647138_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200569
CP012309.1\|AXU71467.1\|1626468_1627368_+\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|274004
CP012309.1\|AXU71475.1\|1634729_1636823_+\|signaling-protein	unknown	unknown	gnl\|CDD\|238923
CP012309.1\|AXU71468.1\|1627372_1627942_+\|lipoprotein	unknown	unknown	unknown
CP012309.1\|AXU71477.1\|1638786_1639185_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71486.1\|1648690_1649236_+\|ruberythrin	unknown	unknown	gnl\|CDD\|153105
CP012309.1\|AXU71481.1\|1642929_1643370_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|225064
CP012309.1\|AXU71482.1\|1643542_1644511_+\|putative-membrane-protein	unknown	unknown	unknown
CP012309.1\|AXU71466.1\|1625731_1626316_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239264
CP012309.1\|AXU71471.1\|1630891_1631074_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71469.1\|1628108_1628756_-\|lactate-utilization-protein-B/C	unknown	unknown	gnl\|CDD\|376839
CP012309.1\|AXU71478.1\|1639278_1640097_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133409
CP012309.1\|AXU71480.1\|1642375_1642603_-\|ferrous-ion-transport-protein	unknown	unknown	gnl\|CDD\|377199
CP012309.1\|AXU71474.1\|1633153_1634050_-\|NADP-oxidoreductase,-coenzyme-F420-dependent	unknown	unknown	gnl\|CDD\|378484
CP012309.1\|AXU71470.1\|1629145_1630060_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378573

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU71472.1\|1631484_1632333_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	3.37615e-164
CP012309.1\|AXU71483.1\|1644987_1646196_+\|tyrosyl-tRNA-synthetase	gnl\|CDD\|237360	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.	0
CP012309.1\|AXU71473.1\|1632351_1633179_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	5.04123e-171
CP012309.1\|AXU71479.1\|1640229_1642350_-\|ferrous-ion-transport-protein	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	4.87851e-151
CP012309.1\|AXU71470.1\|1629145_1630060_-\|hypothetical-protein	gnl\|CDD\|378573	pfam11155, DUF2935, Domain of unknown function (DUF2935). This family of proteins with unknown function appears to be restricted to Firmicutes. The structure of this protein has been solved and each domain is composed of four alpha helices. A metal cluster composed of iron and magnesium lies between the two domains.	9.98828e-34
CP012309.1\|AXU71467.1\|1626468_1627368_+\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|274004	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.	3.69407e-25
CP012309.1\|AXU71475.1\|1634729_1636823_+\|signaling-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	8.22965e-89
CP012309.1\|AXU71484.1\|1646256_1647138_-\|polysaccharide-deacetylase	gnl\|CDD\|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	3.30794e-75
CP012309.1\|AXU71486.1\|1648690_1649236_+\|ruberythrin	gnl\|CDD\|153105	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.	1.43332e-53
CP012309.1\|AXU71481.1\|1642929_1643370_-\|acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	2.14803e-35
CP012309.1\|AXU71466.1\|1625731_1626316_+\|thioredoxin	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.30578e-17
CP012309.1\|AXU71469.1\|1628108_1628756_-\|lactate-utilization-protein-B/C	gnl\|CDD\|376839	pfam02589, LUD_dom, LUD domain. This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate.	3.25008e-55
CP012309.1\|AXU71485.1\|1647553_1648468_+\|transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	5.32316e-11
CP012309.1\|AXU71480.1\|1642375_1642603_-\|ferrous-ion-transport-protein	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	1.57039e-13
CP012309.1\|AXU71474.1\|1633153_1634050_-\|NADP-oxidoreductase,-coenzyme-F420-dependent	gnl\|CDD\|378484	pfam10728, DUF2520, Domain of unknown function (DUF2520). This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases.	1.13018e-41
CP012309.1\|AXU71478.1\|1639278_1640097_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133409	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	3.2764e-41

>CP012309.1|AXU71475.1|1634729_1636823_+|signaling-protein
MNKHNFEVILNQLQINIYVTNIHTNEIIFMNKKMKEEYNILDPEGKVCWQVLYPEKNSTCSFCKVLELLKNDKKGVLIKWYEKCNKLNRVFENYDSLITWQDGTVVHMHQSIDIANSTSLNKPIKINEFHEISNNKEEKGVFNFSRDNFDYNSTLLYDALIRGTDEYIYICNMKTGVFRYSPSQVELFDLPGEIVENPLVYWKKIVHPEDWNRFYKSNTEIGKNQMDYHTVEFRAKNRSGEYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKIDSLTQLLNYHEFMSVFEDKISNPMIEKLCIVLLNIDDFKNVNEMYDRDFGDNIIKTLAQSIQSILPDNAELYKLDGDEMGILVDNVEENEILTLYNQIQNMIIHLQLWRKYGLNITISAGCVIYPKHGDTVKELYKCASYSLQYAKEHGKNKLVFFSQEILKNKMYSLEMMRDLKASINDDFRGFSLRFQPQVDTESHKIIGVEVLLRWTNDKCKAISPLEFIPILEENDMINIVGAWVLRMALRTFRKWIDYYPFFKVSVNVSAVQILEDTFIEDIVKIIDDENFPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDDFGTGYSSLEVLKFSPIDIVKIDRVFVKDILKSKFDATFIHFIVAICHDVGIKVCLEGVETQEEYDLVKQIKPDYIQGYLFGKPQTATEIFDLLKLDN
>CP012309.1|AXU71474.1|1633153_1634050_-|NADP-oxidoreductase,-coenzyme-F420-dependent
MANYFLSKGYCVSGFYGRNQLSLLESTNLTKTKIYSNLKDIIYENDILFITTSDDSIEIIDKKLSKFNLKHKYICHTSGSLKSSILFCSKKAGALIYSIHPIFAFSNKNTNIKKMKDICFSIEGDNEQDDLVIQNFIDDLGNQFFIRDKDTSSTYHLANVLVSNLVLSLLDIGVSYFIKLGLSEEESLKAISPLVKKNIENILDNGFTKALTGPVSRGDITPIRKHLSVLDKKDEDIYKILSLNLLKIIALGNDNSLKGIKNITIENAIENLISKSEKYKEIYKLLGGKNDEKYHTDF
>CP012309.1|AXU71473.1|1632351_1633179_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKNTIQTFKNAKYEGKKLSMLTAYDYSIAKIMDECDINGILIGDSLGMVIKGEENTLSVTIDEIIYHTKAVKNGVKNALIVSDMPFLSYHVSIEDAVKNAGRLIKEGGAHAVKLEGGSNVIKQIESIVNAQIPVMGHLGLTPQSVNSFGGFKVQGNTSETARQLIEDAKLIEKAGAFSIVLEGVPTKIAEMVTNSISIPTIGIGAGINCDGQILVYQDMLGMFGDFVPKFVKQYANIGDIMKDSIKNYILEVNTGAFPQEKHSFSINKSELEKLY
>CP012309.1|AXU71472.1|1631484_1632333_-|pantoate--beta-alanine-ligase
MLVKEIKLLRNIIKDWRKHGYSIGLVTTMGFLHEGHQSLIKKAVKENDKVVVSVFVNPTQFGPNEDFNSYPRDIDKDFKYCMDSGATVVFNPSPEEMYLKGNCTTINVSGLTDFLCGAKRPVHFGGVCLVVSKFLNIVTPDKAYFGEKDAQQLAVIKRMVKDLNIDTEIIGCPIIRENDGLAKSSRNTYLSEEERKSALILNKSLSLAKEKLVKGNLNPENIKELITAKINSEHLAKIDYVEIVDSETLQPVKQIEHSILVAIAVFIGKTRLIDNFTFKLNI
>CP012309.1|AXU71471.1|1630891_1631074_-|hypothetical-protein
MFKDKIDECVHIMTAYIASLKEYYSFIETQIGDFIKKYGEDVVELCLHRVMILLCECGLA
>CP012309.1|AXU71470.1|1629145_1630060_-|hypothetical-protein
MIDNQKYVILSLELHLFFSRIMKEHALFLEAGFTNKNYNLAMEADHYKKQFEDLLSYTVSASNGIIRPDILYSEELVTTLTSVAEQKTEEFTGIEINKNITTRELNLQSGVNPQVGQDLVNYVAQLNSDAIRLLDGLINFKERVLDGVLSCTIFTSNYPLLLEHIIHEANLYRSYVVDLENKIDIESKNAKEIELFWDHIMMEHALFMRGLLDPSEDELINTSNDFAIKFNELIEKTNEMTDSNIKNITEETLNETVEFKDFKEAGASGIEQCKIKSIILPLLADHVLREANHYIRILESYKNM
>CP012309.1|AXU71469.1|1628108_1628756_-|lactate-utilization-protein-B/C
MIRQTPLEKRYDKLGPHIVTALKKRYFDAYYCKTRNEALQQILDLIPQNHVVSWGGSETLKEMGVQTAVREKGFKVIDRDLAKTPEERTEIMRQALLCDTFLMSSNAISEDGQLFNIDGNGNRVAAMIFGPKNVIVVAGMNKIVKNIDDAIQRTRTIASPAVVQRFQDVNTPCYINGSCIDCTSPESICAYMVTTRISRPAKKIKVILVGENLGL
>CP012309.1|AXU71468.1|1627372_1627942_+|lipoprotein
MKKFIICIIIFAISVLVLAGCTNDNKIKNEVDSMFNSIKTQDADTVDKYFPKSGLGNLIYEDKEGFKMYSKNMTWEISDIKNNKDKVTVDLKINNTDMVSILKKNPPKLGEMMPNPTMKDIDSAKKKEFNITLELVKSGDNYVCKVNQESAMKLLNVITGGGIDYLADYNKDYYKQLDEEQKNYENKNS
>CP012309.1|AXU71467.1|1626468_1627368_+|iron-sulfur-cluster-binding-protein
MKLLSKVNNNIRLITQVAFTALTNGYVNGFLEGTIYGGESKKLCVPGLNCYSCPGALGACPIGSLQAVLSSREYKFSFYVVGFLMAFGAFFGRFVCGWLCPFGLVQDLLHKVPFPVKIKKVYGDKYLKYLKYIVLIMFVIILPVAIVNVAGGGNPWFCKWICPSGTLLGGIPLILGNENLRESIGFLFSWKLSILLLILLMSIITYRPFCKYICPLGAIYGFFNPISIYRFKIDKDKCTNCTACQTKCKLDIPIYKDVNSPDCIRCGECIKVCPQNAITTTFSKDKKENNICAKKYRGI
>CP012309.1|AXU71466.1|1625731_1626316_+|thioredoxin
MKKFFMVVLGCIFVLGVISGCSKKESKPVEKNKNNSEWFSNLDTEDVDGNKVTKEIFSNKELTLINVWTTWCGPCVGEMPELEALSKEYESNNSNVAIKGLVVEVDKTDMRTGLSNEEKNLVKDIMKKSDATYQQLTVSEELKKTDFKRVMEFPTTYFVDKKGNFVGEKVVGANSKEDWKKIIDERLKMVKANE
>CP012309.1|AXU71477.1|1638786_1639185_-|hypothetical-protein
MVLILKLKCQLDVSYKYFIHSHHKKRYTLLTFGWNIIFILVRVKIVIGATIRYLIKHKVNYCNKKSLDKLELKYGNIDREKAVKLEIFYQYLIELEYIEMSLLIRRLDTAITSLALVSIITIASYYLIRKNV
>CP012309.1|AXU71478.1|1639278_1640097_+|MerR-family-transcriptional-regulator
MEKQYFTTGEFAKLCGISKQTLIFYDKIGIFSPEYKDKNNYRYYSVYQYDTLDILQSLREIGMSLEEIKEYIQNRTPQLCVKMLKEEEKKIREKIKKLRKISSKMQNRINITVEGISKMNSEEIYISKKFEEYLVLSSDLSNMSNSDFMMELIDFTNYCKSKNLYQGYELGVIVSNESIKNGDYLSISSFYLKIDKKIKDKKLYVKPEGMYACIKHIGKYEDSYKSYEKLKKYIYENEYKIIGNSYEESILDFFCESNEDNYMTEISIQVSR
>CP012309.1|AXU71479.1|1640229_1642350_-|ferrous-ion-transport-protein
MGLTHNSTKMSSLKDMFDIDNKEDQFVIALAGNPNTGKSTVFNHLTGLRQHTGNWPGKTVATARGNFKYKNTEYALIDLPGTYSLFALSQEEIVARDFICFGNPDAVIVVCDATCLERNLNLVFQVMELTDKVILCINLIDEARKKGITIDKKLLEDSLGIPVILTAARNGSGMDELLDTLNDVSFDKYKLNNKPVRYNENIENVVKSIQPELDNIIPGINSRWLGLRLIDGDESIFESMSNYIDKDSIDAINEVKKKIPDNINKQKIRDEFTKINYDYAKKLSDECCSNVAKKSTDREEKVDKILTSKIFGLPIMLLLLGTILWITIEGANYPSTLLSNLLLGFEPSISGILNSINCPSWLNDMLVLGLYRTLAWVISVMLPPMAIFFPLFTLLEDFGYLPRVAFNLDHLFKKACAHGKQCLTMCMGFGCNAAGVIGCRIIDSPRERLIAILTNNFVPCNGRFPTLIAISTIFFSSVITNSFVSSVVTALCITLLIILGVIITLLVSYTLSKTLLKGVPSTFTLELPPYRVPQIGRTLYTSIIDRTIFVLGRAVMVAIPAGVITWIFANIYIGDLSILSHVANFLDPLAKLIGLDGFILLAFILGFPANEIVVPILLMAYLATGSMIELDSFSALGQVLREHGWTYLTALNVMLFSLLHWPCATTLLTIKKETGSLKWTALGFLMPTILAFVVCFLTTTVYNLFI
>CP012309.1|AXU71480.1|1642375_1642603_-|ferrous-ion-transport-protein
MKNLNDIQVKKTVKVEDILSSGNLRERMLALGLTRGAVIDVVRKGPKNNLTVYKIRGSKIALRQEESSLILVSDI
>CP012309.1|AXU71481.1|1642929_1643370_-|acetyltransferase
MFKIKHFNDLSLDEFYEIAKSRYEVFACEQKIFSLNDYDDIDKSSYHIFLKENGLICAYARIIPKEYSSYNDVSIGRVLVLSSHRRKGLAKQMMDCAIDFIKVNLHENNITLSAQTYIKNLYLSCGFKEISEVYDEAGIEHIKMRL
>CP012309.1|AXU71482.1|1643542_1644511_+|putative-membrane-protein
MNTTKKLTEAALLSSLFIVVTIIAVSTGFGYAIYLDFIVPVFFCIICLKCDLKYTILSGITSLLIISLVLGNLGTAIWASQSVLLGIMCGYLINKPTMVMDDLVYGSVFGVIVMVFIDIYASTLIGYSFMKEFQGYSKWIYFNGYTNFIYYLMIALFPFGMVFCIYLLSLILGNKLHILDSNSLKKFLIFKNFRNLNQFLCCSKKAFYICVSYLAIFEVLKLLNVKVDSVYLKTIFISITYISVYFIIRDSCMSLQNFIIAKFRKLLYARILFLIIILLLFFIFDVTVISLIIINAFLNKKINIRLSQSNIVNKQINLLIEK
>CP012309.1|AXU71483.1|1644987_1646196_+|tyrosyl-tRNA-synthetase
MKSIDEQMRIIMKGVDDLIDEKELREKLIKSEKEGKPMIVKLGLDPSAPDIHLGHTVVLRKMKQLQDLGHQIVIIIGDFTGKIGDPTGKSKARKALTTEQVLANAKTYEEQIFKVLDKEKTIVRFNSEWLAKLNFEDVIKLAATITVARMLEREDFKKRYEGQMPISVHEFFYPLMQAYDSIALEADIELGGTDQRFNLLMGRSLQREFGMESQIVIMMPLIEGLDGKEKMSKSLGNYIGIDEEAGIMYQKSMEIPDELIIKYYNLVTDVHPDEVNKIESQLKEGSVNPRDIKMNLAREIVTLYHGEESAKEAEERFKSVFQKGQIPEDIQTIQVKEDGFDLIEVLVSNEIVKSKSEVRRLASQGGVKVNGEKVEDLSTIVKESELVVQIGKKKFVKIELVK
>CP012309.1|AXU71484.1|1646256_1647138_-|polysaccharide-deacetylase
MVKKRKKKTVTLTILVVIVIGIFSMAWADMSRKKEMKETQERLKAERLEKERIEKEKNEPIIGAKKEAVKEYGYDAKIVWDKLNKYDYSNNGEKIVFLTFDDGPSTTNTPQVLDILKRHGVRGTFFIKGDSLERKGANEILKRTFDEGNAIAHHSYTHDYKKLYPNRSLNLDTFVNELNKTDEAMKKVLGKNFSSNVVRCPGGYMSWKNMEPLGNYLKEKNMASIDWNALNADAEGKKKNAQELFEHAKKSSEGKEMVVLLMHDTYGKQETVNALDQIITYFKDNGYQFKILI
>CP012309.1|AXU71485.1|1647553_1648468_+|transporter
MKKYFGEIGLIFIAIIWGSGFVATQFALDGGLTPLQIITLRFFLAAIIMNLLFFKQIRANMGKKLLKAGGILGIFLFLAFTVQTIGLMYTTPSKNAFITAANVVIVPFIGFILYRRKLDKIGIISSLVALIGIGILSLEADFSINFGDFLTLICSFGFAFHIFFTSEFAKDNNPMALTAIQFTVAFLMSVVVQTFAGQLKMEAELSGYMGTMYLAVFSTTIGFLFQTICQKRVDGTRTAIILSTEAVFGTIFSIIILKELITAKLVIGSILIFVAIITAETKLSFLKSKKMKLKDSEESSLESI
>CP012309.1|AXU71486.1|1648690_1649236_+|ruberythrin
MKKFVCTVCGYIHEGDAAPAQCPVCKVGADKFEEMKGEMVWADEHRIGVAQGVDAEIIEGLRANFTGECTEVGMYLAMSRQADREGYPEVAEAYKRIAFEEAEHAAKFAELLGEVVVADTKENLRVRVDAEYGATDGKLKLAKRAKELGLDAIHDTVHEMCKDEARHGKAFLGLLNRHFGK

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Crispr_ID: CP012309_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_10

1726531-1726691

Orphan

I-A

Consensus_repeat	Method
GTTTTAGATTAACTATATGGAATGTAAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP012309_10

>merge|CP012309|10|1726531-1726691|CRISPRCasFinder
GTTTTAGATTAACTATATGGAATGTAAATCCACCTTATAGAACTTCAATGTTTTTATTAGTTCCATGTTTTAGATTAACTATATGGAATGTAAATATAACTAATACATGGGAATATACAAATGAAATAACTAGTTTTAGATTAACTATGTGGACTTAAAAT

>CP012309|10|9|1726531-1726691|CRISPRCasFinder
GTTTTAGATTAACTATATGGAATGTAAAT	CCACCTTATAGAACTTCAATGTTTTTATTAGTTCCAT
GTTTTAGATTAACTATATGGAATGTAAAT	ATAACTAATACATGGGAATATACAAATGAAATAACTA
GTTTTAGATTAACTATGTGGACTTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU71560.1\|1721608_1721956_+\|phage-protein	unknown	unknown	unknown
CP012309.1\|AXU71572.1\|1732784_1733045_+\|phage-protein	unknown	unknown	gnl\|CDD\|378501
CP012309.1\|AXU71569.1\|1727722_1730113_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|131723
CP012309.1\|AXU71566.1\|1724850_1725291_+\|phage-protein	unknown	unknown	gnl\|CDD\|378084
CP012309.1\|AXU71570.1\|1730124_1730814_+\|phage-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|236880
CP012309.1\|AXU71576.1\|1735140_1736166_+\|phage-tail-fiber-protein	unknown	unknown	gnl\|CDD\|372197
CP012309.1\|AXU71564.1\|1722981_1724292_+\|phage-protein	unknown	unknown	gnl\|CDD\|377435
CP012309.1\|AXU71562.1\|1722373_1722811_+\|phage-protein	unknown	unknown	unknown
CP012309.1\|AXU71559.1\|1721213_1721615_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71567.1\|1726133_1726238_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71558.1\|1720970_1721204_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274765
CP012309.1\|AXU71563.1\|1722794_1722980_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71573.1\|1733049_1733469_+\|phage-protein	unknown	unknown	gnl\|CDD\|378510
CP012309.1\|AXU71574.1\|1733469_1734519_+\|phage-protein	unknown	unknown	gnl\|CDD\|377414
CP012309.1\|AXU71565.1\|1724308_1724779_+\|phage-protein	unknown	unknown	gnl\|CDD\|378178
CP012309.1\|AXU71561.1\|1721955_1722381_+\|phage-protein	unknown	unknown	gnl\|CDD\|377415
CP012309.1\|AXU71575.1\|1734511_1735129_+\|phage-protein	unknown	unknown	gnl\|CDD\|378379
CP012309.1\|AXU71577.1\|1736180_1737764_+\|Glycine-rich-protein	unknown	unknown	gnl\|CDD\|372323
CP012309.1\|AXU71571.1\|1730806_1732771_+\|phage-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|366353
CP012309.1\|AXU71568.1\|1726817_1727699_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU71569.1\|1727722_1730113_+\|phage-tail-tape-measure-protein	gnl\|CDD\|131723	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.	1.93639e-16
CP012309.1\|AXU71564.1\|1722981_1724292_+\|phage-protein	gnl\|CDD\|377435	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain. This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	2.2158e-37
CP012309.1\|AXU71570.1\|1730124_1730814_+\|phage-cell-wall-hydrolase	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	3.91547e-11
CP012309.1\|AXU71576.1\|1735140_1736166_+\|phage-tail-fiber-protein	gnl\|CDD\|372197	pfam12571, DUF3751, Phage tail-collar fibre protein. This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.	1.66967e-58
CP012309.1\|AXU71566.1\|1724850_1725291_+\|phage-protein	gnl\|CDD\|378084	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC. This is a family of phage tail assembly chaperone proteins, TACs, from Gram-positive bacteriophages, in particular PBSX from Firmicutes.	8.20802e-57
CP012309.1\|AXU71577.1\|1736180_1737764_+\|Glycine-rich-protein	gnl\|CDD\|372323	pfam12810, Gly_rich, Glycine rich protein. This family of proteins is greatly expanded in Trichomonas vaginalis. The proteins are composed of several glycine rich motifs interspersed through the sequence. Although many proteins have been annotated by similarity in the family these annotations given the biased composition of the sequences these are unlikely to be functionally relevant.	8.63343e-50
CP012309.1\|AXU71575.1\|1734511_1735129_+\|phage-protein	gnl\|CDD\|378379	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313). Members of this family of proteins comprise various hypothetical and putative bacteriophage tail proteins.	4.29928e-40
CP012309.1\|AXU71558.1\|1720970_1721204_+\|hypothetical-protein	gnl\|CDD\|274765	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	0.000139844
CP012309.1\|AXU71572.1\|1732784_1733045_+\|phage-protein	gnl\|CDD\|378501	pfam10844, DUF2577, Protein of unknown function (DUF2577). This family of proteins has no known function.	9.36661e-18
CP012309.1\|AXU71573.1\|1733049_1733469_+\|phage-protein	gnl\|CDD\|378510	pfam10934, DUF2634, Protein of unknown function (DUF2634). Some members in this family of proteins are annotated as phage related, xkdS however currently there is no known function.	4.4685e-35
CP012309.1\|AXU71574.1\|1733469_1734519_+\|phage-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	1.41808e-50
CP012309.1\|AXU71565.1\|1724308_1724779_+\|phage-protein	gnl\|CDD\|378178	pfam09393, DUF2001, Phage tail tube protein. This is a family of phage tail tube proteins including protein XkdM from phage-like element PBSX protein whose structure adopts a beta barrel flanked with alpha helical regions.	2.40208e-57
CP012309.1\|AXU71561.1\|1721955_1722381_+\|phage-protein	gnl\|CDD\|377415	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component. This family of proteins is found in the caudovirales. It may be a tail component.	1.08501e-17
CP012309.1\|AXU71571.1\|1730806_1732771_+\|phage-cell-wall-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	3.48707e-33

>CP012309.1|AXU71567.1|1726133_1726238_+|hypothetical-protein
MIGFLLSILAGVISAYIYDKIKNHPDANKGDLKK
>CP012309.1|AXU71566.1|1724850_1725291_+|phage-protein
MSNLSAFLSQNAIKVDNVKYVASNRFLDKEGKPVEWELKVLSSEEDEALRRKCTKRVKVIGNNGKHTGQYTSEIDYNSYVAELCVASTVFPDLKDAELQNSYGVMGEAQLLKTMLTAGEYVNYTVKVNEVNGFDTSFEDKVEEAKN
>CP012309.1|AXU71565.1|1724308_1724779_+|phage-protein
MAQTINAKDTVSAKKAECFITIEGKRYNFMQAIDLEAKMEKNKSEVPILGRTTKGNKTTGSTNTGSATFHYNTSIFRELLYRYKETGEDIYFDIQVTNEDPTSAVGRQTVVLKDCNMDSGIITKFDADGEYLDEDMDFTFEDWELVEKFNLLAGME
>CP012309.1|AXU71564.1|1722981_1724292_+|phage-protein
MALGGGTFVTQNKILPGSYINFISAKRATSSLSDRGIVAIPLELDWGIDEDVFQVTNDDFEKYSTKFFGYDYTHEKLKGLRDLFKNIRLGYFYKLNKGVKASCTIATAKYSGIRGNDLKVTVTTNIDDNAKFDVVTLLDNKKVDTQIAKVITDLQDNDYITWKKDATLEASAGLVFTGGTNGEAVTGAEYQAFLDKIESYSFNALGCLATTTEIKSLFVEFTKRMRDKVGAKFQTVLYKKSDADYEGVVSVENKIKDIGLVESSLIYWAAGAIAGCDINKSNTNKKYDGEFDVDVNYTQIQLEEALKTGKFIFHKVGDEVHVLEDINTFVSFTDDKNDDFSSNQSVRVLDQIANDIATLFNEKYLGKVPNDKAGRISFWNDVVKHHKELENVRAIEDFKTDDVSVELGNDKKTVIVSDAVKVINAMSKLYMTVSVS
>CP012309.1|AXU71563.1|1722794_1722980_+|hypothetical-protein
MIILSKTLSKGTDYKFTKEQIVNSKKYINRKDLLNAILKENELYSFSEVEEIINSFMKGVS
>CP012309.1|AXU71562.1|1722373_1722811_+|phage-protein
MLNNIIDGISIKLDKTFGESYTIYSEDVEQGINEPCFFIVPLNPSKVSYPSGRTLKKNSFDVHYFPRSKDKSFEINEIAEMLLEELEYIEIDGDLVRGTNMNFEIIDNVLHFFVDYNYFTIKNNDINKMDTVELFGGLKRGDNFE
>CP012309.1|AXU71561.1|1721955_1722381_+|phage-protein
MARWGSVDFREFKRVCKKMEKLTKIDLDKFCKDAARELAARLLGKVIRRTPVDTGFLRQGWSGVAYARSLPVYKQGNNYIIEVVNPTEYASYVEYGHRTKGGKGWVKGQHFLTISEMELQSQVDKIIEKKLLILLKGVFDA
>CP012309.1|AXU71560.1|1721608_1721956_+|phage-protein
MVSKTRKAIEMLYRDKCTIVEYQPIKDPVTKRTNNKEVIVLENQPCKLSYKNIVSATEGKVAKLEQTIKLFISPDIEIKAGSKLIINDKEYVRSGESAIYPNHQEIILELFKDKA
>CP012309.1|AXU71559.1|1721213_1721615_+|hypothetical-protein
MENNIIDEIEKRLESFGYILKDGDKWLIGFVREKIENIIKLDCNIKTMPIELKEIEVDMIVGEFLFTKKNMGQLDIESINFEAVEKSISEGDTKVDFAIGSGSQTPEQRFDSLIAYLTTYGKNKILTFRCLRW
>CP012309.1|AXU71558.1|1720970_1721204_+|hypothetical-protein
MAQVRKLNRILTIEECKIDDFLEMGYDLIDETGKAVKYGKSLNVKDLIAENNILRSKVESLEEENKQLKEKNKLTKK
>CP012309.1|AXU71568.1|1726817_1727699_+|hypothetical-protein
MWNKFKSLNTLNKIFFGIIAFVIFPITITAFLGELSIKLLSNGFKNKKKLKIISGFIAAYFFIACATSTFLIYKDSFKNSSETAKMSTGESEVQADKNIDSKDKKDVKLSEDEQKISKVTNLAPEQVQNTAKILKECGIEEFESIKHDEGLDNAHFDGEKGYRIEFGGSKNIILYMNKDNSVYNVRWADNDFYKDGKVVSKVSDYTLTMDEKTALQLQCQNGVSAVLKSPSTAKFPNITKWMFSKNKEEIVVQSYVDSQNSFGATMRSEFQIIFTSDGKDVKSFIFDGKEMIK
>CP012309.1|AXU71569.1|1727722_1730113_+|phage-tail-tape-measure-protein
MVTLFLYLGLRKESEEMATIQTSIRIFDGMTPAFRSMTASINTTINSLERLQGRLNNPLNTGGIQTSQQSLNNIESVLTRIEQKIGSADNEQRKFNEDISKGASNTDRLLGSVKKVVGTYMDLKTIGGLANLSDQMTSTNARLNMINDGQLSDGGLNKMIFQSAERSRASYLDTAQIVSRIGMNAGSAFSSTREIVSFAEQLNKKFIIAGASTQEMSSALLQLTQGLGSGVLRGEELNAVFESAPNIIKSIADYLDVDIGKIRGMASEGMLTADIVKNSLLSAAEQTNAEFEKMPYTLGQIFTSVKNNAVMIFGAIQKKIEDTVSSGGFRTFIANVTDAIYVLGSVGYSVFNGFIDLLSSPVFQNFFNVMIVGSSLVVQGLGWIITQVLNVANVFAQNWSIISPIIYGVVAATIIYSLALVGVWVWEKLVAASKFAVMFAQMLLNTQTLAGYRYLILYATGQWIANEAMLACPIFWVIAGIIALTVALFIAVAVYNHFAGTSISAISLVVGAWYWLCAVVYNIISGIVNAINICVVGIANAFRTGLYAVQCFFIDMANAGLRSAENLAKGFDKFATNLANGIIKGVNIAVKALNWLVEQINKIPGIELPQMQEFQKINTVIGTNTKFKQIQKPPEPKAWKPELVELKNLKSEFIKGYDVGHQLQNKLKDTFDISKIAEDAKKKLGLDDLWDKKYGLGDGIGSAGLNSPLGDAAKGAKDTAGNTAKMAKTMDKSQEDLKYLRDIAEQETINRFTGVNIKIDMNNTNNINSEADVDGIVNVLTEKLNDAMVVSAEGIV
>CP012309.1|AXU71570.1|1730124_1730814_+|phage-cell-wall-hydrolase
MAYDFYLDGVQLPIPPPKLEIKVTNKNKTVDLINTGEVNILKKEGLSEISFEAEFTHNKLPFYRGTFRDVQFFLSKLELLKTDCKPFQFIVSRELGNKVLFNTNIKVSLEEYAISEDAENGSDTKVAIKLKQYRDYSTKKLVLAPPKNETGRPNVKIEPKQVDSVNATNTKTYTVKAGDSLWSICQKQLGNGSLYKKVYELNKSMMDKANKGKNLSKYTIYKGQVLKLG
>CP012309.1|AXU71571.1|1730806_1732771_+|phage-cell-wall-hydrolase
MVDELVLANDRDVRLVIAHWEDFYEPAVIDGITWEIERRGTPSKLEFTIVMDDILEFCEGNSVRLYYKGIGIFYGYIFQKKRDKENHIKIVAYDQLRYFKNKDTYVYSNKTASELVKMLAKDFNLKYNVIEDTKYKISRIEENKTLFDMILTALDDTLREKKEMYVLYDDFGRITLKNVASMKLDTVMNNDVIEDFDYNSSIDSDTYTKIKLVRDNEESGKRDVYIAQDSAHMRSWGILQMFDTVDKNMSEAEIKQKCDILLKLYNKKTKSLSLKNALGDIRVRAGCLVPIFLNLGDIELQNYMLVEKVKHTFENNSHFMDLTLVDGDEFASYSSSSYSSGNTNNKNEKQNGPAQSTTSKEDNDMINKLNKIFKNKLSNTGNIFVKYSNAYKVNAALMAAISIHETGNGSSSLCKNKNNFFGMKGMSFSSVDEGIKKGISNLSRNYIHTGRKTLERIRDKYAPLYDSPLNKDWVPGVGKFYKQITGSTYTSNNAGTGVGSNEEAEKNLKDTTYQVQNNNSNTSTNNNSKVSKVIQEAKNQLGKPYAWGGNGPKSFDCSGLMVWAFKRGAGINLPRVSADQSKDSRGKLLCNINDVKAGDLVFFKNEQGKVHHVGLYIGNDQYIHAPQTGDVVKISSLSGRQKKKHDFARARRFF
>CP012309.1|AXU71572.1|1732784_1733045_+|phage-protein
MSQELLQIIKKAAMDAVETSNPIQIAFGTIESISPLRVKIEQKLSIGEIFLIQTETFKRYTDKKIGDKLVLIRMQGGQQYLILDRM
>CP012309.1|AXU71573.1|1733049_1733469_+|phage-protein
MLPSDNLDYDIEDVSIVNFDVRQEPSKTFKLNIEKSKIDGICDDVEALKQTIFLILNTERYQHLIYSWNYGVELNYLIGEPISFVIPELERRIKEALIQDDRVENVDNFEFQNVKGKVHCKFTVYSKYGNIKAEKVVSV
>CP012309.1|AXU71574.1|1733469_1734519_+|phage-protein
MFELMTFENIIKRMLDSVPDTFDKREGSIIYNALAPVAIELTETYIAMDELLDQTFVDTASYYYLEKRCKERGITPLEATNTIAKGVFNIDIPLDSRFNLGEYNYIATERISEGIYKMKCETAGPIFELGQLIPIEYIDGLETAELTEILINGEDEESEDSLRQRYYDSLNSQSFGGNIQNYKDEVNKLPDVGGVKVYPVWDGGGTVKLVIINSNFKVPSSDLVNLVQEEIDPLQKQGEGLGLAPIGHRVTVEGVTSTTINISAEITYKNGYTWENIKSIAEEAIDDYLNELNMSWEDEENLIVRISQIETRLLSIDGVLDIANTMINEVKSNLTINSNSIVVRGEVVG
>CP012309.1|AXU71575.1|1734511_1735129_+|phage-protein
MDKEINLINYLPQILQDKEEYIKVFNVENKEIKTLYDKLKDLSNDQFLEDLTISGIKRWEKIMSITPKSNESLEDRRFRIFSKYISKLPYSERFLRNWLDNVVGEGNYELTINNATYNIHLESDARNQDWFEEVHSFVSNIKPCNMTLDYTRVLISKDNYMNFGITTLMGQEITIYPWSPPDIETYGEIDVLTGNGVGYQEITIF
>CP012309.1|AXU71576.1|1735140_1736166_+|phage-tail-fiber-protein
MAIDKSYYTIITDVGKAKIANASVTGNKVGFVKIQLGDGGGSEYTPTESQTALKNVVWEGNIGNTTTDETAPNCIILESLIPSSVGGFMIREIGYLDDENNLIAISKYKECYKPSIEQGAVVDMKVKTVLIVSNVNNIELKIDPTIIFATLKDIQDLETKIGTVNTKIDTTKTELTSNIETAKTELNTRIDTENEKQNIKIDQLIAGGSNVASTQTITIDDWVEDVENGFKTTVTHSLLTQRIVVNIIDATTKENVVTNFKIIDDNSIEIRSEVKVELNVYVINGNAETRFINATVDDNRVSEMTTYSSKKIEDRFLNLEEKVNGNLSNISTSVNELITYC
>CP012309.1|AXU71577.1|1736180_1737764_+|Glycine-rich-protein
MQTEWIFGYTGAEQSIILPNGRYRLECWGAGANSLTNSAESYSCFGGYSKGELTLKKETTLHIFVGQYTGNFNGGGKGMTGTGGGATDIRLIGGSWDNEQGLLSRIIVAGGAGAGSGYGYTGSHGGGIVGNNGEGSENRWTAGATQTEGGRGQVGGLGGSFGKGNRSSGDMTNAPKFGGGGGWFGGAGSGSNFASGGGGSGYVLTKDSYKPVGYTPTNEYWLENTSMTVGGNNINASHGKVKITLLQALPFLNISSYNSTTATFKADHTDPTLLTKIEYFIDDVLKETITTDLTTEKTINYTLEDNALHTLKIVVTDSNNATAEKVLSISKNIMPLPENVNLNDISTKLVEVNAGFKVGKTSIINTLALKNIEASLNNTLVELSEKIKTSFNSSDASVQDLMNQLTQANNTISQLNSKYKFAYSLDLTVNWFIDCGFKPDFVIYECINNHGKFLVFLTPFNYFVFDIGNSGWTITAREDISEKDSFSTNDINKFWGTKIRDTGFNNADMPKDSLNDRYVFWIAIKCL

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Crispr_ID: CP012309_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_11

1875709-1876591

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTATGTGGTATGTAAAT	PILER-CR
GTTTTATATTAACTATGTGGTATGTAAAT	CRISPRCasFinder
GTTTTATATTAACTATGTGGTATGTAAAT	CRT

13 spacers

The CRISPR arrays of CP012309_11

>merge|CP012309|11|1875709-1876591|PILER-CR,CRISPRCasFinder,CRT
GTTTTATATTAACTATGTGGTATGTAAATTTTTATAAAAGGTCTAGCAAATAATTGTTAGACTTTTGTTTTATATTAACTATGTGGTATGTAAATTCTATAACATTACTAGCAAAATCAAGGACTTGGTCTTGTTTTATATTAACTATGTGGTATGTAAATTGAACTTGAAAGCGAAGTAGTCGGGAATGACTTTTTGTTTTATATTAACTATGTGGTATGTAAATAATACAAAGAGAAACGAATTGATAAAATCGGGTGTATGTTTTATATTAACTATGTGGTATGTAAATTAATTTTTACTATTTCGGTATCCTCTTTCAAAGACTTGTTTTATATTAACTATGTGGTATGTAAATTTAATCAATGTTATAACCTTCCTAGTTCAACATGGGTTTTATATTAACTATGTGGTATGTAAATGAAAATCAGTTTTTCGGGATTTTAGCTTCTGAGGATTGTTTTATATTAACTATGTGGTATGTAAATGGGCAACAGAAACATTACCAAAAATAATAAATAGCATGTTTTATATTAACTATGTGGTATGTAAATTTATCTATTTCACTTATATTGTCGACATCCCACTCAGTTTTATATTAACTATGTGGTATGTAAATGATGGTAAAGTAGGTTCTGGAGCAGTAGGAAATATAAGTTTTATATTAACTATGTGGTATGTAAATGCGTTTTTTGGGGCTATGTTGTTGGGATTTTCTTTTTGTTTTATATTAACTATGTGGTATGTAAATTTTTTCAGTTGCGATGGATCTGGGACAGAAACACATAGTTTTATATTAACTATGTGGTATGTAAATTATGTTAAGTACTTCTTGTGGGGTCATAAAAAAACGAGTTTTATATTAACTATGTGGTATGTAAAT

>CP012309|11|3|1875709-1876591|PILER-CR
GTTTTATATTAACTATGTGGTATGTAAAT	TTTTATAAAAGGTCTAGCAAATAATTGTTAGACTTTT
GTTTTATATTAACTATGTGGTATGTAAAT	TCTATAACATTACTAGCAAAATCAAGGACTTGGTCTT
GTTTTATATTAACTATGTGGTATGTAAAT	TGAACTTGAAAGCGAAGTAGTCGGGAATGACTTTTT
GTTTTATATTAACTATGTGGTATGTAAAT	AATACAAAGAGAAACGAATTGATAAAATCGGGTGTAT
GTTTTATATTAACTATGTGGTATGTAAAT	TAATTTTTACTATTTCGGTATCCTCTTTCAAAGACTT
GTTTTATATTAACTATGTGGTATGTAAAT	TTAATCAATGTTATAACCTTCCTAGTTCAACATGG
GTTTTATATTAACTATGTGGTATGTAAAT	GAAAATCAGTTTTTCGGGATTTTAGCTTCTGAGGATT
GTTTTATATTAACTATGTGGTATGTAAAT	GGGCAACAGAAACATTACCAAAAATAATAAATAGCAT
GTTTTATATTAACTATGTGGTATGTAAAT	TTATCTATTTCACTTATATTGTCGACATCCCACTCA
GTTTTATATTAACTATGTGGTATGTAAAT	GATGGTAAAGTAGGTTCTGGAGCAGTAGGAAATATAA
GTTTTATATTAACTATGTGGTATGTAAAT	GCGTTTTTTGGGGCTATGTTGTTGGGATTTTCTTTTT
GTTTTATATTAACTATGTGGTATGTAAAT	TTTTTCAGTTGCGATGGATCTGGGACAGAAACACATA
GTTTTATATTAACTATGTGGTATGTAAAT	TATGTTAAGTACTTCTTGTGGGGTCATAAAAAAACGA
GTTTTATATTAACTATGTGGTATGTAAAT

>CP012309|11|10|1875709-1876591|CRISPRCasFinder
GTTTTATATTAACTATGTGGTATGTAAAT	TTTTATAAAAGGTCTAGCAAATAATTGTTAGACTTTT
GTTTTATATTAACTATGTGGTATGTAAAT	TCTATAACATTACTAGCAAAATCAAGGACTTGGTCTT
GTTTTATATTAACTATGTGGTATGTAAAT	TGAACTTGAAAGCGAAGTAGTCGGGAATGACTTTTT
GTTTTATATTAACTATGTGGTATGTAAAT	AATACAAAGAGAAACGAATTGATAAAATCGGGTGTAT
GTTTTATATTAACTATGTGGTATGTAAAT	TAATTTTTACTATTTCGGTATCCTCTTTCAAAGACTT
GTTTTATATTAACTATGTGGTATGTAAAT	TTAATCAATGTTATAACCTTCCTAGTTCAACATGG
GTTTTATATTAACTATGTGGTATGTAAAT	GAAAATCAGTTTTTCGGGATTTTAGCTTCTGAGGATT
GTTTTATATTAACTATGTGGTATGTAAAT	GGGCAACAGAAACATTACCAAAAATAATAAATAGCAT
GTTTTATATTAACTATGTGGTATGTAAAT	TTATCTATTTCACTTATATTGTCGACATCCCACTCA
GTTTTATATTAACTATGTGGTATGTAAAT	GATGGTAAAGTAGGTTCTGGAGCAGTAGGAAATATAA
GTTTTATATTAACTATGTGGTATGTAAAT	GCGTTTTTTGGGGCTATGTTGTTGGGATTTTCTTTTT
GTTTTATATTAACTATGTGGTATGTAAAT	TTTTTCAGTTGCGATGGATCTGGGACAGAAACACATA
GTTTTATATTAACTATGTGGTATGTAAAT	TATGTTAAGTACTTCTTGTGGGGTCATAAAAAAACGA
GTTTTATATTAACTATGTGGTATGTAAAT

>CP012309|11|5|1875709-1876591|CRT
GTTTTATATTAACTATGTGGTATGTAAAT	TTTTATAAAAGGTCTAGCAAATAATTGTTAGACTTTT
GTTTTATATTAACTATGTGGTATGTAAAT	TCTATAACATTACTAGCAAAATCAAGGACTTGGTCTT
GTTTTATATTAACTATGTGGTATGTAAAT	TGAACTTGAAAGCGAAGTAGTCGGGAATGACTTTTT
GTTTTATATTAACTATGTGGTATGTAAAT	AATACAAAGAGAAACGAATTGATAAAATCGGGTGTAT
GTTTTATATTAACTATGTGGTATGTAAAT	TAATTTTTACTATTTCGGTATCCTCTTTCAAAGACTT
GTTTTATATTAACTATGTGGTATGTAAAT	TTAATCAATGTTATAACCTTCCTAGTTCAACATGG
GTTTTATATTAACTATGTGGTATGTAAAT	GAAAATCAGTTTTTCGGGATTTTAGCTTCTGAGGATT
GTTTTATATTAACTATGTGGTATGTAAAT	GGGCAACAGAAACATTACCAAAAATAATAAATAGCAT
GTTTTATATTAACTATGTGGTATGTAAAT	TTATCTATTTCACTTATATTGTCGACATCCCACTCA
GTTTTATATTAACTATGTGGTATGTAAAT	GATGGTAAAGTAGGTTCTGGAGCAGTAGGAAATATAA
GTTTTATATTAACTATGTGGTATGTAAAT	GCGTTTTTTGGGGCTATGTTGTTGGGATTTTCTTTTT
GTTTTATATTAACTATGTGGTATGTAAAT	TTTTTCAGTTGCGATGGATCTGGGACAGAAACACATA
GTTTTATATTAACTATGTGGTATGTAAAT	TATGTTAAGTACTTCTTGTGGGGTCATAAAAAAACGA
GTTTTATATTAACTATGTGGTATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU71704.1\|1884428_1885451_+\|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component	unknown	unknown	unknown
CP012309.1\|AXU71692.1\|1866083_1868558_+\|bifunctional-glycine-dehydrogenase/aminomethyl-transferase-protein	unknown	unknown	gnl\|CDD\|234769
CP012309.1\|AXU71687.1\|1859228_1859828_-\|tellurium-resistance-protein	unknown	unknown	gnl\|CDD\|226595
CP012309.1\|AXU71701.1\|1879824_1881669_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176521
CP012309.1\|AXU71695.1\|1872880_1873198_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377724
CP012309.1\|AXU71696.1\|1873781_1875053_-\|guanine-deaminase	unknown	unknown	gnl\|CDD\|238628
CP012309.1\|AXU71703.1\|1883677_1883854_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71693.1\|1868557_1870015_+\|glycine-dehydrogenase-subunit-2	unknown	unknown	gnl\|CDD\|235292
CP012309.1\|AXU71689.1\|1861037_1862024_-\|lipoate-protein-ligase	unknown	unknown	gnl\|CDD\|161920
CP012309.1\|AXU71690.1\|1862507_1864238_+\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|224671
CP012309.1\|AXU71697.1\|1876999_1877287_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71706.1\|1886357_1887131_+\|ABC-transporter-permease	unknown	unknown	unknown
CP012309.1\|AXU71694.1\|1870437_1872795_+\|cation-transporting-ATPase	unknown	unknown	gnl\|CDD\|319795
CP012309.1\|AXU71698.1\|1877311_1877410_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71705.1\|1885464_1886352_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213231
CP012309.1\|AXU71691.1\|1864762_1865278_+\|CF-9-family-membrane-protein	unknown	unknown	gnl\|CDD\|379370
CP012309.1\|AXU71702.1\|1881990_1882575_+\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
CP012309.1\|AXU71688.1\|1859930_1860728_-\|lipoprotein	unknown	unknown	gnl\|CDD\|224381
CP012309.1\|AXU71700.1\|1878567_1879530_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|107204
CP012309.1\|AXU71699.1\|1877825_1878377_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU71692.1\|1866083_1868558_+\|bifunctional-glycine-dehydrogenase/aminomethyl-transferase-protein	gnl\|CDD\|234769	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA.	0
CP012309.1\|AXU71687.1\|1859228_1859828_-\|tellurium-resistance-protein	gnl\|CDD\|226595	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only].	2.42153e-79
CP012309.1\|AXU71701.1\|1879824_1881669_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176521	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.	7.29876e-94
CP012309.1\|AXU71695.1\|1872880_1873198_-\|hypothetical-protein	gnl\|CDD\|377724	pfam06865, DUF1255, Protein of unknown function (DUF1255). This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.	2.92347e-53
CP012309.1\|AXU71696.1\|1873781_1875053_-\|guanine-deaminase	gnl\|CDD\|238628	cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.	1.83825e-167
CP012309.1\|AXU71693.1\|1868557_1870015_+\|glycine-dehydrogenase-subunit-2	gnl\|CDD\|235292	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB.	0
CP012309.1\|AXU71689.1\|1861037_1862024_-\|lipoate-protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	4.63204e-94
CP012309.1\|AXU71690.1\|1862507_1864238_+\|Na+/H+-antiporter	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	2.00354e-58
CP012309.1\|AXU71694.1\|1870437_1872795_+\|cation-transporting-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
CP012309.1\|AXU71705.1\|1885464_1886352_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213231	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	8.39998e-106
CP012309.1\|AXU71691.1\|1864762_1865278_+\|CF-9-family-membrane-protein	gnl\|CDD\|379370	pfam13787, HXXEE, Protein of unknown function with HXXEE motif. This domain contains an HXXEE motif, another conserved histidine and a YXPG motif. Its function is unknown.	1.24055e-21
CP012309.1\|AXU71702.1\|1881990_1882575_+\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	6.50127e-94
CP012309.1\|AXU71688.1\|1859930_1860728_-\|lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	3.07907e-94
CP012309.1\|AXU71700.1\|1878567_1879530_+\|cysteine-synthase-A	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	3.00924e-108
CP012309.1\|AXU71699.1\|1877825_1878377_-\|transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	4.10679e-17

>CP012309.1|AXU71696.1|1873781_1875053_-|guanine-deaminase
MLKVLKGNIIFTKTSETFTVFENSYIILEKGKVKGIFKEIPKEYKNLEVVDYTDKLIIPGMNDLHAHASQFKNLGIAMDKELLPWLETYVFPEESNYKDIEYATKMYKKFVKEVWKSGTTRTAVFATVHKEASMKLMDIFKEVGLGAYIGKVNMNMNCPDTLLENTHDSIADTEEFINKYSDTDSIVKPIVTPRFIPSCTSELLKALGDLCLKYNIPMQSHLSENYDEIEWVKNLEPESKFYGDAYNRYNLFGQTPTLMAHCVHCSQDEIDLMRENNVMAVHCPASNFNVGSGAMPIRKLIDNNIRLALGSDISGGHTLSIFKAMVSAIQLSKLYWVNSGKKYNFLSLSEAFYIATKSGGSFFGKVGSFEEGYDFDALIIDDSNLNHDNYSILERLERFIYVGDDRNIIHRYVCGKLIEEPNI
>CP012309.1|AXU71695.1|1872880_1873198_-|hypothetical-protein
MSEFKNVTAVKKANVYFDGKVSSRVIILPNGERKTLGLMLPGEYTFSTREEEIMEMLAGSMDVKLPGSNEFVTYKEGQKFNVPSDSSFDLKVNEVVDYCCSYIAD
>CP012309.1|AXU71694.1|1870437_1872795_+|cation-transporting-ATPase
MDKVNLERYSCDINVGLNKNQLQSRIDDNLINAFDNGKTKTYKQIFKDNIFTLFNLINIVLVCLLVSVGSFKNTLFIFIAVINTIIGVIQEIRAKRLLDNLSVIVSNKVSVIREKEKKEIDVQELVLDDIMILKTGNQICADSKVLNGKLEVNESLVTGESDIIIKNKGDFLYSGSFVVSGEAFVRVENIGKDNYANKIANDAKISKKHNSQLRNSLNAILKIVGIIIIPLGIILFAKQHFGNGDSIATSVVGTVAAVNGMIPEGLTLLTSIALAVGTIKLASHKTLVQELYCVETLARVDTLCLDKTGTITEGKMQVDDIVMLEEVDINEIMGNICNSLKDDNATLNAIRDKYNVLDTYKAKNLIPFSSERKYSGVTFENKGTYLLGAFEFIFKEKNKKLRIEVERYSKKGNRVIVLAHSDSYMEDNNIPEDIKPLAFILILDKIRDEAKETLEFFYNEGVDIKIISGDNPITVSEVARKAGLKTASNFIDATTLKNDSDIYKAVDKYSVFGRVSPQQKKQMILALKKQNHTVAMTGDGVNDVLALKEADCSISMASGSDVTKNVSNLVLLDSNFASMPKVVMEGRKVINNIQRASSLFLVKTIFSFFLSLLTLFFFSRQYPFVPIQLSLIGAVTVGIPSFFLALEANKSRISGNFLLNILKNALPGALCVTVNVIIVYNIVEYLGYSSSVFSTMCAILTGVCGLLILRQQCLPFNKERLFLIVSMTIAFVIGILFLGGLFSFVALSRELILITMTLAILMPIMIKVMLFVLDEILETIVPDLN
>CP012309.1|AXU71693.1|1868557_1870015_+|glycine-dehydrogenase-subunit-2
MKEYNSLLIDISKKGRKAYSLPKLDIDDIKIEDMIDQDMARQSELNLPEVGELELVRHYTLLSNKNFGVDTGFYPLGSCTMKYNPKINEDMAALPNFTGIHPYQSSDTAQGSLSLMYDLSRRLAEITGMDEVTLQPSAGSHGEFTGLMIIKAYHENRDDHKRTKVIIPDSAHGTNPASAAMANFDVIQIASDKNGAVDINALKEVLNDEVAALMLTNPSTLGLFEKNIKEIATLVHEAGGLLYYDGANMNAIMGITRPGDMGFDVVHLNLHKTFSTPHGGGGPGAGPVGVKKELVPFLPIPVIERKEDKYVLNYDREKSIGKIKNFYGNFGVLVRAYTYILTMGRDGLKEASEMAVLNANYIKESIKDDYILPIDTLCKHEFVLGGLPRGEANIKTIDIAKRLLDYGYHPPTMYFPLIINEALMIEPTESESIETLDSFIEAMKSVAKEAKEEPELLKTAPHNTLVKRVDDARAVKKPILTWSQR
>CP012309.1|AXU71692.1|1866083_1868558_+|bifunctional-glycine-dehydrogenase/aminomethyl-transferase-protein
MNELKRVSLYNIHKELGAKLVEFAGWEMPLEYEGINKEHEKVRKSAGIFDVSHMGEVQIKGAESEKFIQNLVTNDISALKINDIIYTPMCYENGGVVDDLLIYKFGEEDYLLVINAGNIDKDVAWIIKQSEGYNVDIKNISSEVSQLAIQGPKAEEILQKITDIDLNSIKFYKSIPSTIVCGCPCLVSRTGYTGEDGFEIYCKNKYVEIIWNEVLKVGGEDICPAGLGCRDTLRFEAALPLYGHEINEHISPIEGGLSIFVKTNKESFIGKSILSKEKESGAKRKLVGFEMQGKGMPRNGYDIRIGDKTVGFVTTGCASPTTGKILGMGIIDSEYAKVGNEIGIAIRKKVVPAVIVKKPFYKKQYKKDNIILNKENKFSYIPATSEDKSKMLKVVGLNSVDELFSDIPEEVKLKRDLNLEIGKSELEVSKIVKRLSEENLSLEDLTCFLGAGAYDHYIPSIIKHITSRSEFYTAYTPYQAEISQGTLQVVFEFQSMIAEITGMEIANASMYDGATAAIEACIMAMNQTRKSKIVVSKTIHPETLSVLRTYLQYKDCEIVEIDFCNEYGTTDIEKLKASVDKDTACVLIQTPNFFGIIEEMEEIEKITHENKAMLIMSVDPISLGVLKTPGEIGADIVVGEAQSLGNPLNFGGPYVGFLASKSKYTRKMPGRIVGQSLDVEGKIAYVLTLQTREQHVRREKATSNICSNQALNALVASIYMATMGKEGFKEVGMQSMKKAHYTYNKLVQTGKYKPIFKGKFFKEFAVQGNLNIETINDKLLEENILGGYNLEYNYPELKNSTLLCVTEKRSKEEIDKLVGIMEGL
>CP012309.1|AXU71691.1|1864762_1865278_+|CF-9-family-membrane-protein
MEKYIWLFPLLFIFHDMEEIIGFGIWLKKNKSMLDKKYPFISKVYENYSTEGMAFAVFEEFILCIIFCILTVITENQYVYLLWLGSFIAYTLHLVIHIGQSIIIRKYIPSLITSIICLPISIWCISKSIYIVDCEMSTTILYSIIGIIIVALNLKFAQSLIGKFTKWMSNI
>CP012309.1|AXU71690.1|1862507_1864238_+|Na+/H+-antiporter
MRNKKINIIFLTTIMFIMSTVMVFAEEDIDTIALANAEKFGILTLIPPLVAIILAFITKNVIISLLIGILSGSFIIKASGINVFATFIQAFLDLVDRALVSLADPWNAGIILQVLAIGGVINLVAKMGGAKAIAEALAKRAKSAKGTQLITWFLGLLVFFDDYANSLIVGPMMRPVADKMKISREKLAFIIDATAAPVAGLAIISTWIGLEVGLIHDAFESISIDVDAFGIFLNTIPFRFYNILILAFIVISALLLKEFGPMRKAEIKSRSRKISIDLDEGVEELDDLAPKNGVKLSVWNAIIPIGTLIIVALASFYYSGYTSIMGGDDKALIQLFTNSPYSFEAIKEAFSASDASRALFQSALVASLVAIIMAVVKKIFTISEAIDVWIDGMKSLVITGVILILAWSLSSVIKELGTAKFLIHLLSGSLPPFLLPSLIFGLGAIISFATGTAYGTMGILMPLAIPLAYSLNPDMSYVIVSTSAVLTGAIFGDHCSPISDTTILSSMGAGCNHIDHVNTQMPYAIFTAVITIVFGYIPAGLGLPIYIVLPVAIAAIFVGIQIIGKKVDEAEIELVE
>CP012309.1|AXU71689.1|1861037_1862024_-|lipoate-protein-ligase
MLLIYNEKTNPYFNLAMEEYLLKNFDEDLFILWRNEPSIIVGKNQNTLSEINLEYIKEYSIPVVRRQSGGGAVFHDLGNINFTFIACNNNNFSDFRRFTQPIIDLLKTLDVNAEFSGRNDLLIDGKKFSGNAQYNYKNKVMHHGTLLFSSEINDLSKALKVKPIKFEGKGIKSVKSRVTNISEHLHSKMDILEFKDAIMDYLSKTNTDNTNYCLSEHDIKQIEKLTKSKYETWDWNFGNSPKYTLSNELKYSGGNVEFNLNVDKGIITSIKFFGDFFGKCDVAFVENKLIGIRHEENALRNTLDSIEINDYFLGADTDILVSGILGVK
>CP012309.1|AXU71688.1|1859930_1860728_-|lipoprotein
MKFKKLLCLLLCLVLTLAVVGCSKAKDDKKIVVGATLVPGGELLEELKPLIKEKGYTLEVKNFDDYILPNEALNNGEIDANLFQHEPYLKEAVKAKGYKIMAGKKLYVCPAILYSYKIKSVDEFKKGDTIAISNNPSSCSKNLRYLESIGLLTLPKGDGLVSPKDIIENPKGIQFKELDIAQIPSSLPDVTAAFIDTTYAVPAGLDAKKNGIYTAPINDEYANLLAFRTEDKDSEKIKVLQDVLTSDKARSLIEEKYKGIVIPTF
>CP012309.1|AXU71687.1|1859228_1859828_-|tellurium-resistance-protein
MAIELKKGQKINLTKKENSDLGEILVNLNWNQKVQKKGFFGSLRSSNIDLDLGCLFEMKNGVKGAVQALGNAFGSLDNPPFAQLDGDDRTGSNTQGENLRINGNKIKDIKRILIYAFIYEGVANWSEADGIVTIKQKQDSDLVVKLDEHKNGYNMCSIALIENVNDETFSVEKVVKYFKGHREMDTEFHWGLKWVAGRK
>CP012309.1|AXU71697.1|1876999_1877287_+|hypothetical-protein
MKKFLYALYSFIVIIANFRLKEKNYNFILLAIFFILLLIQNGVLKTGYQNRATFYQDNYFNGEDKNDKIKFMTIKIFIFLSLPLCFNILFNYLTS
>CP012309.1|AXU71698.1|1877311_1877410_+|hypothetical-protein
MIKVSLCVICSKYKVHIVIKQKFHINEEKNIK
>CP012309.1|AXU71699.1|1877825_1878377_-|transcriptional-regulator
MSINTVIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSNPTVNTIWKIASGLNVPYTAILEQPQNETFIVSKTDIDVQVSENKDYRLYCYYPNTPTRNFELFQMELEEGHSYTSVGHSEKSQEYIMIIEGQLKLEVNDSIYQLRENDSICFSAESIHTYHNQGEKTLKAVIINYYPV
>CP012309.1|AXU71700.1|1878567_1879530_+|cysteine-synthase-A
MRVLNNVTEAIGNTHMLHLSKIADEFGVQGNIYAKMEYLNPGFSKKDRVALQMITEAENAGLLVPGQAVVELTSGNTGTGLAIACACKGYKFIACMSKGNSMERARMMKALGAEVVLVDQMPNSVHGQVSGEDLALVEIEAQKIAKERNAFRADQFNLEACNHAHEKYTAEEMWEQLDGNIDVFVDFLGSGSTFAGCSKTLKKHNSSIKCYVVEPETAAIYSGKEITDQGHKIQGGGYSMDLPLVDKKLIDGYIQVTDEEATDVARKLAKLEGVFAGFSSGANVCAAIKLLKSSEKGKNIVLTLNDSGLKYLSTDLYEEL
>CP012309.1|AXU71701.1|1879824_1881669_+|glycerophosphoryl-diester-phosphodiesterase
MQKRILRNFIFTGKNILSKLVFIIKYNFSTLILFELFHKGLALFFIWPSIRYIFDILIKSLHIVYLNMDNFIKVLTNPMSIVLIILSVIILAFYAFFEFTSVIICFNKSIKYEKIGLFELFKISFKNSIKLLYPKNILLFIFVILIIPLVNTVLISGFIGKIQIPEYILDYIKSDIILNIIYMIFLLIIYISVIRWIFSIHEITLNTENFKRARKESVNLIKGKIIRTIIYSLILSLVVAIIGYAIYHSGIIFIGIWTKYCTDMEFLKNVFINRCIAFEEYFRLILSIFIFILDIGFISATYYQYKGVSISKNNIKKEKKSISKIVFNLVLILLISYIESVAFSSHINGMFNTSFSFYTTAIAHRAGAEMAPENTLAAIEEASHAKADYAEIDVQETKDGELIVLHDSNFKRTTGVDKNVWDVNYNEVKTYDAGSFYYYGKGYYDEKFVGEKIPTLKEMIKYSKGKVKLLIEIKLNGHEKGDVVKKVVQLIKENNFENQCIVASMDKTILQKVKKLDENLLTCYFMAIAYGDFSKLNYVDIYGIESTFVNKTVVEKIHKMNKKIFVWTVNSDSLIEKMLDLNVDSIITDNPYLIESAIYWKKNGFISQVSDYLF
>CP012309.1|AXU71702.1|1881990_1882575_+|sugar-O-acetyltransferase
MTEREKMLAGELYDCGDIELLTQWHKAKDLVRDYNQTDSSDLEKKEKILNELLGGKGKNLWITAPYYVDYGNNIYFGNNCEVNMNCTFLDDNKIIIGDNALIAPNVQIYTAFHPTNAGDRFGNAKEDGSFEFCKTQTAPVTIGDNVWIGGGAIIMPGVTIGDNVVIGAGSIVTKDIPSNMIAYGNPCRIIRENK
>CP012309.1|AXU71703.1|1883677_1883854_-|hypothetical-protein
MFIGEIDKCTHILTAYISSSYDYCNFLDTQLDDFISEYGETVVETCLHQVLLLVSRYN
>CP012309.1|AXU71704.1|1884428_1885451_+|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component
MVNWEIKKLAKSKSMFISLGILVLILMISIFIAPVLETESYYIDKEKGRIEDTRSGIDIGNEKFQNKINVLKQFSNQTDTGEFSKKIELMSKKKLDNLSVNEYKDISFWKVFNYRVTNSLINVGMLIIISIIISNIYVDEVVTSVKDIILSSKEKKKALKSKIFVALLVPLVIYSVYLMGIFIITCMQQGVPVNGDLESFRIVDNVVALKTNLSITKYVILNIGIELLMFEGWAMIAIFGSFISKSSISSISFFIFIISITKIMSVIHILPKKLLSVVSNVNYYDLMFGFNKIIGNYLGDIMIFKVNIDIVNIAIGFLMAILIGAMSLCFLVIKSDYISR
>CP012309.1|AXU71705.1|1885464_1886352_+|ABC-transporter-ATP-binding-protein
MNKLEIENLSKIYGKKVANDKITVTLENGVYGLLGPNGAGKSTLMKQITTLIKPDEGQILYNGEDIFKMDADYRNILGYLPQEFGVYKNFTAKEFLQYIGALKGLRGKYLNSKIGELLDLVGLYDVRNKSIGKFSGGMKRRVGIAQVLLNDPKIIVLDEPTAGLDPQERARFRNLIAKMSRDKIIILSTHIISDIESVAKETIMIKDGKLLMKGTHKDILSHMENKVYNVQVKNECEVDDIQSKYKVVSIQSDIDSVVLRIVSEDIPSGDNIQPVQAKFEDVYMFYFDLEDAREV
>CP012309.1|AXU71706.1|1886357_1887131_+|ABC-transporter-permease
MMYLVKAEMIKILKSKSVWIIWLFLIFFGFFLIRKFDVLDTYADIFYKIEGSIPLIGLIMFIITSGNYIKEYDSNMTGLINTTKKGKKSVVLSKLVANGLILSIINISFILLVGIRGFSFFDFKNLNEPIHNLWYFGNSNLNLTVIQMYIIVILTTIFASFIFAQIGLTLSSIFKSAVIPFILGGLIMAIPYFSVGFIPDKAIKFMSVTPNWIMMSQQMVKYNVPSILIVFSIVISIILMIVLTKITYENFTSSKRF

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Crispr_ID: CP012309_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_12

2189084-2189375

Orphan

I-A

Consensus_repeat	Method
CTTTACATACCACATAGTTGATATAAAAC	CRISPRCasFinder
CTTTACATACCACATAGTTGATATAAAAC	CRT
GTTTTATATCAACTATGTGGTATGTAAAG	PILER-CR

4 spacers

csa3

The CRISPR arrays of CP012309_12

>merge|CP012309|12|2189084-2189375|CRISPRCasFinder,CRT,PILER-CR
TTTTACATACCACATAGTTGATATAAAACTTAAGACTAGCAGACTCATAAGCAATTAGTTGCCTCTCTTTACATACCACATAGTTGATATAAAACTTTAATAATAAGGAGAGAAAAAATGAATATTTATGACTTTACATACCACATAGTTGATATAAAACTAATTGGAGTCCAATCTAATTTAATAGAAGGAATACTCTTTACATACCACATAGTTGATATAAAACGTTTTGGGGGTACTGGTACTTTTACCTCCTGCACTTCCTTTACATACCACATAGTTGATATAAAAC

>CP012309|12|11|2189084-2189375|CRISPRCasFinder
TTTTACATACCACATAGTTGATATAAAAC	TTAAGACTAGCAGACTCATAAGCAATTAGTTGCCTCT
CTTTACATACCACATAGTTGATATAAAAC	TTTAATAATAAGGAGAGAAAAAATGAATATTTATGA
CTTTACATACCACATAGTTGATATAAAAC	TAATTGGAGTCCAATCTAATTTAATAGAAGGAATACT
CTTTACATACCACATAGTTGATATAAAAC	GTTTTGGGGGTACTGGTACTTTTACCTCCTGCACTTC
CTTTACATACCACATAGTTGATATAAAAC

>CP012309|12|6|2189084-2189375|CRT
TTTTACATACCACATAGTTGATATAAAAC	TTAAGACTAGCAGACTCATAAGCAATTAGTTGCCTCT
CTTTACATACCACATAGTTGATATAAAAC	TTTAATAATAAGGAGAGAAAAAATGAATATTTATGA
CTTTACATACCACATAGTTGATATAAAAC	TAATTGGAGTCCAATCTAATTTAATAGAAGGAATACT
CTTTACATACCACATAGTTGATATAAAAC	GTTTTGGGGGTACTGGTACTTTTACCTCCTGCACTTC
CTTTACATACCACATAGTTGATATAAAAC

>CP012309|12|4|2189085-2189375|PILER-CR
TTTACATACCACATAGTTGATATAAAACT	TAAGACTAGCAGACTCATAAGCAATTAGTTGCCTCTC
TTTACATACCACATAGTTGATATAAAACT	TTAATAATAAGGAGAGAAAAAATGAATATTTATGAC
TTTACATACCACATAGTTGATATAAAACT	AATTGGAGTCCAATCTAATTTAATAGAAGGAATACTC
TTTACATACCACATAGTTGATATAAAACG	TTTTGGGGGTACTGGTACTTTTACCTCCTGCACTTCC
TTTACATACCACATAGTTGATATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU72004.1\|2191628_2191961_-\|decarboxylase	unknown	unknown	gnl\|CDD\|367130
CP012309.1\|AXU72003.1\|2190923_2191088_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72011.1\|2198989_2199646_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP012309.1\|AXU72010.1\|2197826_2198906_-\|proline-iminopeptidase	unknown	unknown	gnl\|CDD\|223669
CP012309.1\|AXU71997.1\|2186341_2186827_-\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|377965
CP012309.1\|AXU72002.1\|2189854_2190700_+\|lipoprotein	unknown	unknown	gnl\|CDD\|379023
CP012309.1\|AXU71999.1\|2188117_2188294_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72005.1\|2192204_2192846_-\|Immunity-protein-SdpI	unknown	unknown	gnl\|CDD\|227945
CP012309.1\|AXU72009.1\|2194898_2196554_-\|AraC-family-transcription-regulator	unknown	unknown	gnl\|CDD\|227095
CP012309.1\|AXU72008.1\|2194087_2194840_-\|transporter	unknown	unknown	gnl\|CDD\|182593
CP012309.1\|AXU72006.1\|2192826_2193123_-\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP012309.1\|AXU71995.1\|2184186_2184738_-\|tryptophan-transport-protein	unknown	unknown	gnl\|CDD\|293704
CP012309.1\|AXU71993.1\|2181922_2183359_-\|cell-surface-protein	unknown	unknown	gnl\|CDD\|380277
CP012309.1\|AXU72000.1\|2188519_2188720_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
CP012309.1\|AXU71998.1\|2187557_2187740_-\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP012309.1\|AXU71994.1\|2183891_2184056_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71991.1\|2179493_2179832_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378903
CP012309.1\|AXU71992.1\|2180238_2181675_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|237675
CP012309.1\|AXU72007.1\|2193742_2193877_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU71996.1\|2185587_2185986_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU72004.1\|2191628_2191961_-\|decarboxylase	gnl\|CDD\|367130	pfam02627, CMD, Carboxymuconolactone decarboxylase family. Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.	6.41975e-19
CP012309.1\|AXU72010.1\|2197826_2198906_-\|proline-iminopeptidase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.9571e-16
CP012309.1\|AXU71997.1\|2186341_2186827_-\|cell-wall-hydrolase	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	0.000235563
CP012309.1\|AXU72002.1\|2189854_2190700_+\|lipoprotein	gnl\|CDD\|379023	pfam13026, DUF3887, Protein of unknown function (DUF3887). This domain family is found in bacteria and archaea, and is approximately 90 amino acids in length.	0.00168457
CP012309.1\|AXU72008.1\|2194087_2194840_-\|transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	2.33356e-48
CP012309.1\|AXU72005.1\|2192204_2192846_-\|Immunity-protein-SdpI	gnl\|CDD\|227945	COG5658, COG5658, Predicted integral membrane protein [Function unknown].	1.04607e-18
CP012309.1\|AXU72009.1\|2194898_2196554_-\|AraC-family-transcription-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	2.06899e-24
CP012309.1\|AXU72011.1\|2198989_2199646_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.5562e-16
CP012309.1\|AXU72006.1\|2192826_2193123_-\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	8.20037e-22
CP012309.1\|AXU71995.1\|2184186_2184738_-\|tryptophan-transport-protein	gnl\|CDD\|293704	pfam17099, TrpP, Tryptophan transporter TrpP. TrpP is a bacterial transmembrane protein that is probably involved in tryptophan uptake. Its expression is regulated by tryptophan-activated RNA-binding regulatory protein (TRAP).	1.63015e-41
CP012309.1\|AXU71993.1\|2181922_2183359_-\|cell-surface-protein	gnl\|CDD\|380277	NF033435, S-layer_Clost, S-layer protein SlpA. In Clostridiodes difficile, the S-layer protein precursor, SlpA, is one member of a large paralogous family of protein that share several cell wall-binding repeats. SlpA is cleaved into a larger and smaller protein. The S-layer protein itself is important to adhesion, and portions of it are highly variable, and then N-terminal and C-terminal are well-conserved.	9.77534e-16
CP012309.1\|AXU72000.1\|2188519_2188720_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.41551e-31
CP012309.1\|AXU71998.1\|2187557_2187740_-\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.62551e-09
CP012309.1\|AXU71991.1\|2179493_2179832_+\|hypothetical-protein	gnl\|CDD\|378903	pfam12650, DUF3784, Domain of unknown function (DUF3784). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 96 and 110 amino acids in length.	2.13827e-16
CP012309.1\|AXU71992.1\|2180238_2181675_-\|radical-SAM-protein	gnl\|CDD\|237675	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0

>CP012309.1|AXU72000.1|2188519_2188720_+|cold-shock-protein
MNNGIVKWFNNEKGFGFISMEGRDDVFAHFSAIQTSGFKSLEEGQQVSFDIVKGARGPQAENITIL
>CP012309.1|AXU71999.1|2188117_2188294_+|hypothetical-protein
MFGNKMDKCTHVLTAYISSSYDYCNFLDTQLDDFILEYGENVVESCLHQVMVLVSKYN
>CP012309.1|AXU71998.1|2187557_2187740_-|regulatory-protein
MLNKKLPDTELKIMKCIWHTGYKTVISKDVADEIEKTYGWKHTTTIILLARLTKKGFLIS
>CP012309.1|AXU71997.1|2186341_2186827_-|cell-wall-hydrolase
MISELMLKNFRKSSINFKTKIKLNLREKPDINSLKLKSIPEGKIVKLKCVDGIWAEVESNYDKGWLLYKYLERLSNAKNNSNDTIKNRKKNYIGNIRTNGLSLELRNDRTLESKVITTIPDGFKVEVCYSVGKWARVNINKNEKRYSGYVYNQYIEEHLSL
>CP012309.1|AXU71996.1|2185587_2185986_-|hypothetical-protein
MNKKKKLIGIAISFLLIISIINPLQVEAEAIIESSVYISSIKENYTYDNTKFKTIKSKSRHKSRKYNKSKVKLKKRSIRTKKYGYQTINKYKRQNARRHNILTKLILSIIVIFLVIVLVVLIFIKRKKKKFY
>CP012309.1|AXU71995.1|2184186_2184738_-|tryptophan-transport-protein
MKTNTKKLTLNAILLAMGLLIHQITPAIGLPMKPDVPLAMLFVILVLNRDDYKTCLIAGIVTGIFTALTSSFPGGQIPNVIDKTLTANIVFLLMNISYNMPFIKKLAKKTQDTVVVAIIMPIGTLVSGTIFLLAAQAIVGLPGASFTALFLAVVLPAVLINLVAGIFLFKIVSLSIRRVSYQA
>CP012309.1|AXU71994.1|2183891_2184056_+|hypothetical-protein
MYSKNEKSEEINIKIYLEKSIKYILYLITTNEIHIRILYRYDNLSVKLSVIGTI
>CP012309.1|AXU71993.1|2181922_2183359_-|cell-surface-protein
MKFYKRILTLTLSISFVFANIQLVDAISSVEKIQGKNKYEIAGKIADKNAYKTAILINTSNSIADGLSASGLAGALNAPILLTEKNTIPTETSARLKNVSKVYIIGGTYSISTSVENSLKSKKMKVVRIKGNDRIKTSYNVAKEINSIKKVNTVMLTNAYKGEADAISIASVAARDKAPIILTNGQSIPFSTSGLKSYVIGGTASMSTTLVNNTKSTRLGGSTRFETNKAIINKFYKDAREFYIAGAYELTNALVGSSLSKHGPMVLVNDGSNKSILKNAKKITSIGYIDSNIVQQCLNITNGIGDINTGVVKNVKPTTKTIKDGMYKVGKDISAGEYLITSNSGSYASYYEVTSDSTGNADSILSNDIFSGTRYITLKNGQYIKIEDSTMTLAKYAKAQKAKNGKFGNGMYKIGLEIPAGEYIIMSNSSDAYYEVRNDSLGNAEGIVTNDTFSGRRYITVEEGQYLILNDCYLIENE
>CP012309.1|AXU71992.1|2180238_2181675_-|radical-SAM-protein
MSKRKQVTIPIEKIQEQDKYIEQIHRQNEEYFNRTGKRKLVFTQTFGCQMNEHDSEKLCSMLEEMGYQMSMMVEESDLIIYNTCAVRENAELKVYGNLGQLKHLKGKNPDMKIAVCGCMMQQPHVVEELRKKYKHVDLIFGTHNLYKFPQLLTESINSDKMLVDVWDVDGEVIEGLRSNRKFELKAFVNIMYGCNNFCTYCIVPYTRGRERSRTPEDIINEIKELVANGTKEITLLGQNVDSYGKTLENPVSFSELLRKVNDIEGIERVRFMTSHPKDISDEVIYAIRDCDKVCEFLHLPIQCGSSSLLKKMNRHYTKEYYLEIIEKAKKEVPGIAFSTDLMIGFPGETEEDLLDTLDVVEKVRYDSAFTFIYSKRQGTPAAKMENQIPEDIKHDRFNRVLEAVNRISAEINDGYKDRIVEVLVEGRSKNNENKFAGRTRQNKLVNFEGGNDDLIGKLVMVKITEPRTFSLNGILVNN
>CP012309.1|AXU71991.1|2179493_2179832_+|hypothetical-protein
MFAVGFVVIIALAFFILSVLLFNGKASMLLAGYNSMSKKEKARYDKKKLCRSSSIVTFIVSIMLFIMAFLGYRIESGQMDEKKMVPFSIIFIIVILSSVFFNILYSNKKCKK
>CP012309.1|AXU72002.1|2189854_2190700_+|lipoprotein
MNIIKSITLLLTLLIVILMTGCSPRESASEVAKKYIDKMNSGDYETAYSLLSKDSKKKISIENLEEFQNILVSTKRIISYKIGKEKIIKKYKHDGKEYKNVVKLEETFNIKNLLYKKDDSLKVNRYFVVENNKYKLLLYESFKKEFGINSMDLAQLKLNDFGLKYFKEVDLILKKAIAINPTDSKLYYAQACNYMNFDGFPGYSDTTYNALDSINKSLKYLDKNDSDYKKNASNIYNLKGVILMFHKRFDEAQQYLNKALYFNKDNEDPKYNLNTIKKHLN
>CP012309.1|AXU72003.1|2190923_2191088_-|hypothetical-protein
MFGKPKESVRFLDFNDVAEKFGEKKAVAIFDAIAGKKSKEHIIKDIEKLVKNEV
>CP012309.1|AXU72004.1|2191628_2191961_-|decarboxylase
MNTREMKEYRVFYNKKLSETDEFFRVFGSLDDKTYSEGAISKKNKELMGLAISILSRCDECICYHIEGCINSGASKDEIIEAIKIGVIGGGSITYPNARFAIKILEEFNI
>CP012309.1|AXU72005.1|2192204_2192846_-|Immunity-protein-SdpI
MKKAINKQFILSTLICFIPFIVSIYFYNRLPNEVAIHFDNYGNPDNYAPKVIAAFGVPLLMLCIHLYTWFRLENEPKKANFSNVIQNLSKWGVAILSVIIQIMMVLYSTGVSLESNFYTGLILGIIVILFGNYLPKCKRNYSVGIILPWTLNDEDNWNKTHHLAGWIWLIGGILLIINAFINIPFYNIFVIFVIVILPFIYSYLMYKISGKNN
>CP012309.1|AXU72006.1|2192826_2193123_-|ArsR-family-transcriptional-regulator
MLGFPETFKALSDPIRREILVMLRENKMSAGEISEKFNMTNATISYHLSQLKKAGLIFETKYKNFIFYEINISVFEEVMLWFSQFMEKGEKDNEKSDK
>CP012309.1|AXU72007.1|2193742_2193877_-|hypothetical-protein
MNISRRAMKIIELAQKIANKRGVTVQDAWNDAMKEYKEKYEYVA
>CP012309.1|AXU72008.1|2194087_2194840_-|transporter
MFSVIFLCIGGFLAAFVDSIAGGGGLISMPVLMAIGVPVHLAIGTNKFAASAGCISSAYRYAKSGKINNNLLKKLVPFTIIGSVLGVRCVLSISEEILNVLVVVMILIVAIYTFISKNLGQEDNFEAVNKKNLRLGMLMALIMGFYDGFFGPGTGTFLTFGFIKIYGYDFLHASANTKILNLTSNITSLLLFMINGQVDYKIAIVFALVMIMGAYVGAKVAIKKGSKMIKPIFLVMALFMVVKLVYQTLV
>CP012309.1|AXU72009.1|2194898_2196554_-|AraC-family-transcription-regulator
MEYFSESNNEVQKFDWGEVMWIHEPSKTQFNRLSAGIVRFFPGNYQEKHFHLSEEQLLYVIQGEGIQIIDGKKVNIKEISIVYCPPYSEHEIINTGKIDLVILITYVPHKFSSLRQIPIVFSENNIQELVNVNIIENLANQISNILKLRISVYDLKYKEIFETKKENKFCDICKNIKQCTKKLVKSINNDNFEKVYHCEYGVSSLEIPIVLEENIVGYIECGNFIVYKSIDIDKNLSELSSSSGIDIKYINKIYNEFPLNPKSRLYVLKENLLMMSEFIQEIAKRNFFENQLSIKDEEILKSRKENIRLEEALKKANSRLLEEEYIINPIDMFNNSSKEYPFELELYIEKEIKNMNLEGVYNLIDTNKLRYNDVRDTIQEMIFVLSRTVLRDLEDLKLISYLRNKYNKKISLVNSDEDLWNVLFEFSKECIDKNRAFWRKDKGNLIENINEYIKKYYKENINLNSISDVFFISPNYLSSIFNERNKVSITEYINLLRIEESKKYLLDRSMSISDICKKVGFNNSSYFSQIFKKFNSITPNEYRKNMLDNKY
>CP012309.1|AXU72010.1|2197826_2198906_-|proline-iminopeptidase
MILITLCILVAVFVLAFAGLRLIAPTIIRTSHKIESPGIDRMEMVEIGGIQQALYIRGQNADNPIILWVHGGPGNSMMPFLHLYQYEWENDFTVVNWDQRNVGKTYFANDPAAVLQTMSAERVLQDVHEVTAYLKQQFNKEKIILIGHSWGTVLGTMAVQTYPEDYSAYIGIAQTVNMVDNERVGYEKTLEMVKAAGKQKDIKALEAVAPYPPAKYGPSYLAALMTVRTYQSKYGLSINMDLGNIISILATPYYSLSELKNTTIVNPNAIDNQGDVLRFLVEEADIRNYGVDYQVPVYYIMGENDYNSPYLPAKKFFDEIVAPDKQIFFIPDADHLPFLSKKAEFDCILLEEIAPKLAK
>CP012309.1|AXU72011.1|2198989_2199646_-|TetR-family-transcriptional-regulator
MTRKNNPKQAIENIITISAKLFAEKGYDKTSMQNIVDASGMSKGGIFHHFSSKEDIFNVVMERRFEQIIETVNQWLGEMHGLTAKEKLRSLVRRHLTDEVIKESSNMITSAIESPHIILAFTQDNLKKLAPILANVLREGIEDRSIITEFPDECAEVILLLFNFWCDTDVFQGDFPTLRKRFQFLQFLMRQIGVDILEDEIIESINIFYERKPMGQVE

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Crispr_ID: CP012309_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_13

2240400-2242001

Orphan

I-A

Consensus_repeat	Method
ATTTACATTCCATATAGTTAATATAAAAC	CRT
GTTTTATATTAACTATATGGAATGTAAAT	PILER-CR
ATTTACATTCCATATAGTTAATATAAAAC	CRISPRCasFinder

24 spacers

The CRISPR arrays of CP012309_13

>merge|CP012309|13|2240400-2242001|CRT,PILER-CR,CRISPRCasFinder
ATTTAGAATATGTATTATTAAATATAAAGTGACTCAATCTTTATTTAATAAGAAAAAACATTTATATTATATATAGTTAATATAAAACAAGCTAAAATAAAAGGATAAGGTGGAACTGTTAATATATTTACATTCCATATAGTTAATATAAAACCATCCTGTTCAATTCCAATATAATGCAGCGTAATACTATTTACATTCCATATAGTTAATATAAAACTTTTACTGTCTGTCATAAGCATCAAACACATGAAAATATTTACATTCCATATAGTTAATATAAAACTCTATTAGGCGATTTGTAATGTTTTTATCTTCTTGTGAATTTACATTCCATATAGTTAATATAAAACTTCATGCAATAATAAACATTTGAATCAATTCTAATTGGATTTACATTCCATATAGTTAATATAAAACCTACACTCTTTAATATTCCAATAAATCCATAGTACTCAATTTACATTCCATATAGTTAATATAAAACTCGAGGAACTAGAATTAAAAAGTTTCTTAGAATAAAATTTACATTCCATATAGTTAATATAAAACAGAAATATGTGTTAGCAGGTAGTTTATTAGGTGAGAGATTTACATTCCATATAGTTAATATAAAACAAATTTATTTTTTGTTTTTGAATTGAGCCTCACCCTATTTACATTCCATATAGTTAATATAAAACGAAATATTAAATTGTGTGTCATCACACACCAGACCTATTTACATTCCATATAGTTAATATAAAACGATGTATGGGATTTAAATATGCAGTTGTGTATGGTAAATTTACATTCCATATAGTTAATATAAAACTCCATTACATTGTAACCTTTCCAAAAATAGAATATAAATTTACATTCCATATAGTTAATACAAAACAACATTAGCAAGTAAAAAAGAGCAAAAATTCACTCAAATTTACATTCCATATAGTTAATATAAAACCTAAAGCATTTCCAAAGAGGACATGCCTTAACTTCAGAATTTACATTCCATATAGTTAATATAAAACTATGTTGTAAAATCAAAGAAGCTGATTGTACAAGGTATTTACATTCCATATAGTTAATATAAAACGATGATGTATATAGTCATAGAGAAGAAATAAGAGAAAATTTACATTCCATATAGTTAATATAAAACTTAGCAAGAGAAAGCAATCTGTGTTCAAAAAAGAGATTTACATTCCATATAGTTAATATAAAACTCCAGGATGTAGTAACTATGATATACCCTTATGCCCATTTACATTCCATATAGTTAATATAAAACTGATGAAGTATGGATAATTTTTTACTTAATGTATTATCATTTACATTCCATATAGTTAATATAAAACGCAAAAGGCGTAGTTATTGATACTCGATATGATAAAGATTTACATTCCATATAGTTAATATAAAACCATTTATGGAATATGTTAAAACAGGAAAATGGCATAATTTACATTCCATATAGTTAATATAAAACGGATGTCAGAGGTATACAACTTCCTTGTTCCAAAAAATTTACATTCCATATAGTTAATATAAAACATTTGTCTAATATTTATAATAAAAAAGTTGTTTTTTCATTTACATTCCATATAGTTAATATAAAAC

>CP012309|13|7|2240400-2242001|CRT
ATTTAGAATATGTATTATTAAATATAAAG	TGACTCAATCTTTATTTAATAAGAAAAAAC
ATTTATATTATATATAGTTAATATAAAAC	AAGCTAAAATAAAAGGATAAGGTGGAACTGTTAATAT
ATTTACATTCCATATAGTTAATATAAAAC	CATCCTGTTCAATTCCAATATAATGCAGCGTAATACT
ATTTACATTCCATATAGTTAATATAAAAC	TTTTACTGTCTGTCATAAGCATCAAACACATGAAAAT
ATTTACATTCCATATAGTTAATATAAAAC	TCTATTAGGCGATTTGTAATGTTTTTATCTTCTTGTGA
ATTTACATTCCATATAGTTAATATAAAAC	TTCATGCAATAATAAACATTTGAATCAATTCTAATTGG
ATTTACATTCCATATAGTTAATATAAAAC	CTACACTCTTTAATATTCCAATAAATCCATAGTACTCA
ATTTACATTCCATATAGTTAATATAAAAC	TCGAGGAACTAGAATTAAAAAGTTTCTTAGAATAAA
ATTTACATTCCATATAGTTAATATAAAAC	AGAAATATGTGTTAGCAGGTAGTTTATTAGGTGAGAG
ATTTACATTCCATATAGTTAATATAAAAC	AAATTTATTTTTTGTTTTTGAATTGAGCCTCACCCT
ATTTACATTCCATATAGTTAATATAAAAC	GAAATATTAAATTGTGTGTCATCACACACCAGACCT
ATTTACATTCCATATAGTTAATATAAAAC	GATGTATGGGATTTAAATATGCAGTTGTGTATGGTAA
ATTTACATTCCATATAGTTAATATAAAAC	TCCATTACATTGTAACCTTTCCAAAAATAGAATATAA
ATTTACATTCCATATAGTTAATACAAAAC	AACATTAGCAAGTAAAAAAGAGCAAAAATTCACTCAA
ATTTACATTCCATATAGTTAATATAAAAC	CTAAAGCATTTCCAAAGAGGACATGCCTTAACTTCAGA
ATTTACATTCCATATAGTTAATATAAAAC	TATGTTGTAAAATCAAAGAAGCTGATTGTACAAGGT
ATTTACATTCCATATAGTTAATATAAAAC	GATGATGTATATAGTCATAGAGAAGAAATAAGAGAAA
ATTTACATTCCATATAGTTAATATAAAAC	TTAGCAAGAGAAAGCAATCTGTGTTCAAAAAAGAG
ATTTACATTCCATATAGTTAATATAAAAC	TCCAGGATGTAGTAACTATGATATACCCTTATGCCC
ATTTACATTCCATATAGTTAATATAAAAC	TGATGAAGTATGGATAATTTTTTACTTAATGTATTATC
ATTTACATTCCATATAGTTAATATAAAAC	GCAAAAGGCGTAGTTATTGATACTCGATATGATAAAG
ATTTACATTCCATATAGTTAATATAAAAC	CATTTATGGAATATGTTAAAACAGGAAAATGGCATA
ATTTACATTCCATATAGTTAATATAAAAC	GGATGTCAGAGGTATACAACTTCCTTGTTCCAAAAA
ATTTACATTCCATATAGTTAATATAAAAC	ATTTGTCTAATATTTATAATAAAAAAGTTGTTTTTTC
ATTTACATTCCATATAGTTAATATAAAAC

>CP012309|13|5|2240459-2242001|PILER-CR
ATTTATATTATATATAGTTAATATAAAAC	AAGCTAAAATAAAAGGATAAGGTGGAACTGTTAATAT
ATTTACATTCCATATAGTTAATATAAAAC	CATCCTGTTCAATTCCAATATAATGCAGCGTAATACT
ATTTACATTCCATATAGTTAATATAAAAC	TTTTACTGTCTGTCATAAGCATCAAACACATGAAAAT
ATTTACATTCCATATAGTTAATATAAAAC	TCTATTAGGCGATTTGTAATGTTTTTATCTTCTTGTGA
ATTTACATTCCATATAGTTAATATAAAAC	TTCATGCAATAATAAACATTTGAATCAATTCTAATTGG
ATTTACATTCCATATAGTTAATATAAAAC	CTACACTCTTTAATATTCCAATAAATCCATAGTACTCA
ATTTACATTCCATATAGTTAATATAAAAC	TCGAGGAACTAGAATTAAAAAGTTTCTTAGAATAAA
ATTTACATTCCATATAGTTAATATAAAAC	AGAAATATGTGTTAGCAGGTAGTTTATTAGGTGAGAG
ATTTACATTCCATATAGTTAATATAAAAC	AAATTTATTTTTTGTTTTTGAATTGAGCCTCACCCT
ATTTACATTCCATATAGTTAATATAAAAC	GAAATATTAAATTGTGTGTCATCACACACCAGACCT
ATTTACATTCCATATAGTTAATATAAAAC	GATGTATGGGATTTAAATATGCAGTTGTGTATGGTAA
ATTTACATTCCATATAGTTAATATAAAAC	TCCATTACATTGTAACCTTTCCAAAAATAGAATATAA
ATTTACATTCCATATAGTTAATACAAAAC	AACATTAGCAAGTAAAAAAGAGCAAAAATTCACTCAA
ATTTACATTCCATATAGTTAATATAAAAC	CTAAAGCATTTCCAAAGAGGACATGCCTTAACTTCAGA
ATTTACATTCCATATAGTTAATATAAAAC	TATGTTGTAAAATCAAAGAAGCTGATTGTACAAGGT
ATTTACATTCCATATAGTTAATATAAAAC	GATGATGTATATAGTCATAGAGAAGAAATAAGAGAAA
ATTTACATTCCATATAGTTAATATAAAAC	TTAGCAAGAGAAAGCAATCTGTGTTCAAAAAAGAG
ATTTACATTCCATATAGTTAATATAAAAC	TCCAGGATGTAGTAACTATGATATACCCTTATGCCC
ATTTACATTCCATATAGTTAATATAAAAC	TGATGAAGTATGGATAATTTTTTACTTAATGTATTATC
ATTTACATTCCATATAGTTAATATAAAAC	GCAAAAGGCGTAGTTATTGATACTCGATATGATAAAG
ATTTACATTCCATATAGTTAATATAAAAC	CATTTATGGAATATGTTAAAACAGGAAAATGGCATA
ATTTACATTCCATATAGTTAATATAAAAC	GGATGTCAGAGGTATACAACTTCCTTGTTCCAAAAA
ATTTACATTCCATATAGTTAATATAAAAC	ATTTGTCTAATATTTATAATAAAAAAGTTGTTTTTTC
ATTTACATTCCATATAGTTAATATAAAAC

>CP012309|13|12|2240459-2242001|CRISPRCasFinder
ATTTATATTATATATAGTTAATATAAAAC	AAGCTAAAATAAAAGGATAAGGTGGAACTGTTAATAT
ATTTACATTCCATATAGTTAATATAAAAC	CATCCTGTTCAATTCCAATATAATGCAGCGTAATACT
ATTTACATTCCATATAGTTAATATAAAAC	TTTTACTGTCTGTCATAAGCATCAAACACATGAAAAT
ATTTACATTCCATATAGTTAATATAAAAC	TCTATTAGGCGATTTGTAATGTTTTTATCTTCTTGTGA
ATTTACATTCCATATAGTTAATATAAAAC	TTCATGCAATAATAAACATTTGAATCAATTCTAATTGG
ATTTACATTCCATATAGTTAATATAAAAC	CTACACTCTTTAATATTCCAATAAATCCATAGTACTCA
ATTTACATTCCATATAGTTAATATAAAAC	TCGAGGAACTAGAATTAAAAAGTTTCTTAGAATAAA
ATTTACATTCCATATAGTTAATATAAAAC	AGAAATATGTGTTAGCAGGTAGTTTATTAGGTGAGAG
ATTTACATTCCATATAGTTAATATAAAAC	AAATTTATTTTTTGTTTTTGAATTGAGCCTCACCCT
ATTTACATTCCATATAGTTAATATAAAAC	GAAATATTAAATTGTGTGTCATCACACACCAGACCT
ATTTACATTCCATATAGTTAATATAAAAC	GATGTATGGGATTTAAATATGCAGTTGTGTATGGTAA
ATTTACATTCCATATAGTTAATATAAAAC	TCCATTACATTGTAACCTTTCCAAAAATAGAATATAA
ATTTACATTCCATATAGTTAATACAAAAC	AACATTAGCAAGTAAAAAAGAGCAAAAATTCACTCAA
ATTTACATTCCATATAGTTAATATAAAAC	CTAAAGCATTTCCAAAGAGGACATGCCTTAACTTCAGA
ATTTACATTCCATATAGTTAATATAAAAC	TATGTTGTAAAATCAAAGAAGCTGATTGTACAAGGT
ATTTACATTCCATATAGTTAATATAAAAC	GATGATGTATATAGTCATAGAGAAGAAATAAGAGAAA
ATTTACATTCCATATAGTTAATATAAAAC	TTAGCAAGAGAAAGCAATCTGTGTTCAAAAAAGAG
ATTTACATTCCATATAGTTAATATAAAAC	TCCAGGATGTAGTAACTATGATATACCCTTATGCCC
ATTTACATTCCATATAGTTAATATAAAAC	TGATGAAGTATGGATAATTTTTTACTTAATGTATTATC
ATTTACATTCCATATAGTTAATATAAAAC	GCAAAAGGCGTAGTTATTGATACTCGATATGATAAAG
ATTTACATTCCATATAGTTAATATAAAAC	CATTTATGGAATATGTTAAAACAGGAAAATGGCATA
ATTTACATTCCATATAGTTAATATAAAAC	GGATGTCAGAGGTATACAACTTCCTTGTTCCAAAAA
ATTTACATTCCATATAGTTAATATAAAAC	ATTTGTCTAATATTTATAATAAAAAAGTTGTTTTTTC
ATTTACATTCCATATAGTTAATATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU72049.1\|2239019_2239235_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226181
CP012309.1\|AXU72058.1\|2250620_2251238_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72052.1\|2244097_2244676_-\|rRNA-methylase	unknown	unknown	gnl\|CDD\|377744
CP012309.1\|AXU72047.1\|2236820_2237519_+\|hydrolase	unknown	unknown	gnl\|CDD\|274612
CP012309.1\|AXU72056.1\|2247756_2249049_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
CP012309.1\|AXU72044.1\|2234096_2234864_-\|GCN5-related-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379530
CP012309.1\|AXU72048.1\|2238541_2239009_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378586
CP012309.1\|AXU72046.1\|2236005_2236563_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP012309.1\|AXU72055.1\|2246880_2247540_-\|lipoprotein	unknown	unknown	gnl\|CDD\|367360
CP012309.1\|AXU72053.1\|2244733_2245450_-\|23S-RNA-and-tRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
CP012309.1\|AXU72059.1\|2251407_2253108_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72043.1\|2232377_2233412_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
CP012309.1\|AXU72041.1\|2230244_2231105_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239783
CP012309.1\|AXU72060.1\|2253504_2254068_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72054.1\|2245640_2246726_+\|permease	unknown	unknown	gnl\|CDD\|223701
CP012309.1\|AXU72057.1\|2249066_2250260_-\|aspartokinase	unknown	unknown	gnl\|CDD\|235843
CP012309.1\|AXU72050.1\|2240005_2240290_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72051.1\|2242831_2243704_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
CP012309.1\|AXU72045.1\|2235163_2235637_+\|N-acetyltransferase-GCN5	unknown	unknown	gnl\|CDD\|379326
CP012309.1\|AXU72042.1\|2231119_2232337_-\|arginine-biosynthesis-bifunctional-protein-ArgJ	unknown	unknown	gnl\|CDD\|239065

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU72049.1\|2239019_2239235_+\|transcriptional-regulator	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	5.48186e-28
CP012309.1\|AXU72052.1\|2244097_2244676_-\|rRNA-methylase	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	7.51313e-74
CP012309.1\|AXU72047.1\|2236820_2237519_+\|hydrolase	gnl\|CDD\|274612	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae.	0.000529377
CP012309.1\|AXU72056.1\|2247756_2249049_-\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	1.28076e-170
CP012309.1\|AXU72044.1\|2234096_2234864_-\|GCN5-related-N-acetyltransferase	gnl\|CDD\|379530	pfam14268, YoaP, YoaP-like. The YoaP-like domain is found at the C-terminus of the B. subtilis YoaP protein. It is found in bacteria and archaea, and is approximately 40 amino acids in length. The family is found in association with pfam00583. There is a single completely conserved residue A that may be functionally important.	1.56956e-15
CP012309.1\|AXU72048.1\|2238541_2239009_+\|hypothetical-protein	gnl\|CDD\|378586	pfam11188, DUF2975, Protein of unknown function (DUF2975). This family of bacterial proteins have no known function. These proteins are likely to be integral membrane proteins. The proteins contain a highly conserved glutamic acid close to their C-terminus.	2.40081e-05
CP012309.1\|AXU72046.1\|2236005_2236563_-\|transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.56319e-10
CP012309.1\|AXU72055.1\|2246880_2247540_-\|lipoprotein	gnl\|CDD\|367360	pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.	6.21857e-06
CP012309.1\|AXU72053.1\|2244733_2245450_-\|23S-RNA-and-tRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.65027e-98
CP012309.1\|AXU72043.1\|2232377_2233412_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
CP012309.1\|AXU72041.1\|2230244_2231105_-\|acetylglutamate-kinase	gnl\|CDD\|239783	cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino Acid Kinase Superfamily (AAK).	3.05784e-152
CP012309.1\|AXU72054.1\|2245640_2246726_+\|permease	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.23342e-37
CP012309.1\|AXU72057.1\|2249066_2250260_-\|aspartokinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	8.79458e-175
CP012309.1\|AXU72051.1\|2242831_2243704_-\|transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.10432e-65
CP012309.1\|AXU72045.1\|2235163_2235637_+\|N-acetyltransferase-GCN5	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.54027e-50
CP012309.1\|AXU72042.1\|2231119_2232337_-\|arginine-biosynthesis-bifunctional-protein-ArgJ	gnl\|CDD\|239065	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. Members of this family may experience feedback inhibition by L-arginine. The active enzyme is a heterotetramer of two alpha and two beta chains, where the alpha and beta chains are the result of autocatalytic cleavage. OATs found in the clavulanic acid biosynthesis gene cluster catalyze the fifth step only, and may utilize acetyl acceptors other than glutamate.	0

>CP012309.1|AXU72050.1|2240005_2240290_-|hypothetical-protein
MLVYNKSFYPNDIFPRLDFSKIKKQLKLIDNDLSDFGSICIIEKEHYTISVNSIGEINVYYDLEYENKVYRIVYEIEKLFKSQVGRFSISTYRN
>CP012309.1|AXU72049.1|2239019_2239235_+|transcriptional-regulator
MAIVVNLDVMMAKRKISLKELAEKIDITNANLSILKTGKAKAIRFTTLNEICKALDCQPGDILEYVEDEND
>CP012309.1|AXU72048.1|2238541_2239009_+|hypothetical-protein
MITKFFSNILSVFLYFLLSLLGVAGIIFLCMIPMFLYDFSSDKVIALIARILYFSDYFIVILFLIFIINSTKYSPFVLENVKRFKVMGFCLLINTIIECINGYNSNTSLIMIFGDNSGGISPLMVISFIFALMCFVIAETFDKAIKIKEDNDLTI
>CP012309.1|AXU72047.1|2236820_2237519_+|hydrolase
MEKKYFEIHGVPSILWGNPSSKLYIYIHGQCGNKEEAEAFANIAVPHECQVLSVDLPEHGERKIEKNSFNPWHVVPELVSIMEYAKCHWNQISLYANSIGAWFSMLSFEKENLRECIFVSPILDMQQLISNMMLWANVSEEQLKHELIIPTSFGHTLSWEYLQYVKQHPITQWNVPTKILYGKHDELTEIGVVEKFVEKFNCNLTIVENGKHWFNTPQELNSLYEWLNTLVK
>CP012309.1|AXU72046.1|2236005_2236563_-|transcriptional-regulator
MRVSREIVIQATSDIVNKDGLNKVSLKVIAEKLGIRTPSLYNHIESLDDLLLEVAHKGMREMNSQMIKATIGNFGDTAIKCISIAYFNFIISNPGVYETIQWATWHGNNETLEIFDEYKSLLEKLILSCNLNTKNTGEVLNLIMSVLHGYSTLQLGKSLLSKEEAIKGLADSIDTVLLGIHKKYD
>CP012309.1|AXU72045.1|2235163_2235637_+|N-acetyltransferase-GCN5
MFKEYLIRELKEDDIKNALDLIWNVFEEFESPDYCDEGITTFHQFIEYNSIIEKIKEKTLFFWGCFDSKKLIGVLAIRNLNHICMLFVDKNYHKHGVAKKLMTTGIQYCICNKFNLTEITVNSSPYAVEVYHKLGFKDTAVEQIVDGIRFTPMKLLI
>CP012309.1|AXU72044.1|2234096_2234864_-|GCN5-related-N-acetyltransferase
MQIIDININNIDNEHICCSISEKKGENCVFSKKAWMKNNFDKGLVFKRFDVRGKAFIEYIPAENAWCPITADNYIFINCFWISGKFKGQGYSNLLLQECVDDAKSKGKYGLVVLSYSKKMPFLSDAKYLKYKGFCLADTSEPNYELLYFPFTDNAPIPYFKNCVKKRKLNENGIVLYYSNQCPHTEKYAPILKKIANSRGIDVNLIKFETAKEAQNAPAPFTTYSLFFNGEFVTNEILSEKKIEKFLDTNIKKFN
>CP012309.1|AXU72043.1|2232377_2233412_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MNKIKVGIIGATGYVGAELIRLLMNHDKVEVTAIGSNSYVGKDIVDIYPSIGYKNNMICIENEKVIDMCDVVFTALPHGVSEKFVIKAIKSKKKVIDLGADFRIKDEEVYSKWYGVSFIDKILHKKAVYGLSEIYKEDIKDADIIANPGCYPTSISLPLMPLLSSKLIKNNNIIIDSKSGLTGAGRELSISSHFTEVNENITAYKIGKHRHTPEIEQNLSESCKEKVSVVFTPNLIPVNRGILSTIYCTKEDNISINDIHRKLTDYYEFKEFIEILPLDKIASLKNVRFSNKCVISLHENGDTLIICSAIDNMIKGAAGQAIQNMNIIFGIEENTGLKNIAPSF
>CP012309.1|AXU72042.1|2231119_2232337_-|arginine-biosynthesis-bifunctional-protein-ArgJ
MEIIKGGVTVSEGFFASGIHCGLRKNKEKRDLALVYSDVLCDAAAVVTQNKVKGNPVYVTQEHIKNGKAQAIIVNSANANTFNGKEGLINAYKMAKFTSDKLNIKESDVLVASTGVIGKPLNIDLIEENMDELVNNLSKQGHIGAREAIMTTDIIKKEIAVAIMYGDKKITIGGMAKGSGMIHPNMATTLGFITTDANIDGVLLKEALKIAVDKSFNRVSVDGDTSTNDMVMILANGKAKNDRINKKDEHYQVFLSALTYVCIELAKLVAKDGEGCTKLIECYINGALSEEHAVKLAKTVISSSLVKTAVFGADANWGRILCALGYAGEEIDMEKVDIIFESMKGYIEVCKNGNGLDFNEEKAKKILEDDEISILVDLNMGNARGNAWGCDLSYDYVRINGSYRN
>CP012309.1|AXU72041.1|2230244_2231105_-|acetylglutamate-kinase
MINIEKANTLIEALPYIEKHQGKTIVVKYGGSAMKKDGLKESVMEDLVLMSYVGINIVLVHGGGAEINKMLAKVDIESKFVNGLRYTDEETMEIVKMVLAGKVNKDLVNKIHTKGGKAVGLCGIDNNMILCDPYKNYELGFVGEIKKVNVELIESCLKSGYISVIATIGVGDDGETYNINGDTAASAIAKELNADKLILLTDVPGLLREPDEEKSLITEVILEDVDKLFEEGIITGGMIPKIEGCVDALNNGVNRVHILDGRVPHSIITELFTDSGIGTLIRKENE
>CP012309.1|AXU72051.1|2242831_2243704_-|transcriptional-regulator
MEETNEMKDSKHLISNIQSQYTRLSKGQKLIAQYILNNYDKVAFMTACKLGETVGVSESTVVRFANALGYSGYPKLQAALQELIKNKLTTVQRVEMAHDYSDDFAILNKVLKSDIDNIRSTLEEIDERAFKEASNKLLRARKIYILGMRSSFVVAQYLGFYLDIILDNVHIIRMDMGDAFEQIVRINEEDVIVAISFPRYSKKSYQIVNYAKEKGAHVISLTDSLFAPVASLADNTLLVKSNMASFVDSLVPALSISNALAISVGMKEKEDIKQHFDDLEQIWKRYSVYE
>CP012309.1|AXU72052.1|2244097_2244676_-|rRNA-methylase
MAYAKYLTKITDINKFYLENIINEGDIVIDATMGNGYDTRYLAEKVGEKGFVYAFDIQEEAIKSTRKKLEKEGYTDRVKLIFDGHEKMNQYIKEEVSCVLFNLGYLPRAKHSIITKPDTTLKAIKLSLEMLKENGVISIAIYTGHDGGQEEKDCIYNLVNNLNQDEFNVLESKFLNQVNNPPQLILIEKKKA
>CP012309.1|AXU72053.1|2244733_2245450_-|23S-RNA-and-tRNA-pseudouridine-synthase
MRINKYIASCGIASRRKAEEIILGGRIKVNGSVVKELSFNIDEEKDIVEFDNKKVKPSENYIYIVLNKPEGYITTVKDQFNRPSVIDILKDVRERVYPIGRLDYETSGLLILTNDGDLTYKLTHPKHEIDKTYVASVKGIISDDEIRQFETGLKIEDYTTAPAKIRVTKENKEKNYSVCEITIHEGRNRQVRKMCKAINHPVLNLRRISVGKIVLKDTKVGEYRYLTEDEIKYLKSIK
>CP012309.1|AXU72054.1|2245640_2246726_+|permease
MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIEKNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLIYTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARNKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRLQ
>CP012309.1|AXU72055.1|2246880_2247540_-|lipoprotein
MRGRVILLISILSIFLVGCSFNKKDEINLVEQGKTYLEKHNYKKAMESLSSALEEDSTNENARAMYMQAMRMSNMTEFEELKNYEGAIKELKLIEKIKNGSSVIKEEATKKKEELTKLEKEQNEAEEQRKKKAKDTAGEDRYRVESDARKSSYSGSSKNNKSSSKNNDKKSDSNKSDNNNSSSQNQEKPNNSNPTPAPTPQDTTGGSDSGGNSQNSNNQ
>CP012309.1|AXU72056.1|2247756_2249049_-|diaminopimelate-decarboxylase
MKLHGTMTVNNDELYIGGVSCLELSKKYQTPLYVFDEALVRQNCREYIEYFKAREGKNKVAYAGKAFLPLYMCNLINEEQMCLDVVSGGELYTAYKSNFPMEKVFFHGNNKTKEEINMGLDLGVGKFVVDNFYELDLLEALCEDKGKTQEIYFRITPGIEAHTHDYIKTGQIDSKFGFALVNGDLFRAIEKLSEYKNIKLVGLHAHIGSQIFDVEPYIDTVDIMMNLVKEIKEKFNIQLTEIDLGGGVGVYYSEGDKPKTIKEFCETIITKAETSCKELGIEVPTLVIEPGRSIVANAGSTLYTVGSIKDIKDVRVYVSVDGGMTDNVRPSLYQASYECSIVNKINHEAMNHVTIAGKCCESGDILIGDINIMDIKSGDILITTSTGAYGYSMSSNYNKIPRAAVVSVFDGNDKIICKRQSYEDLLALEI
>CP012309.1|AXU72057.1|2249066_2250260_-|aspartokinase
MSIIVQKYGGSSVADTEKIKSIAENIIERRKENPQMVIVVSAMGKSTDEYITLAKELSNEPSKRELDALMSTGEMISASLLSIALNALGCKAISYNAYQLNIKTSGLHGKSQIDDINVNRIKNSLDEGNVVIVTGFQGINEDGDVTTLGRGGSDTSAVALAVKLNGKCEIYTDVDGIYFTDPRKYSKASKLDEIEYEEMLELASLGAQVMHSRSIELAQKYGVEIYVGRTCGTEKGTYIRGGKDMKLEDKVITGLATSDDDSSITIKDFKAENISSLFEDIATIGISVDMISQTAPILDKISVSFTVPKEELGECKKIVSKYTDEEHVVIDNNITKFSLVGLGMKNTSGVAAKVFKIFNENGIMIKLITTSEIRITCAINSDDKQVAIEKIAEVFNI
>CP012309.1|AXU72058.1|2250620_2251238_-|hypothetical-protein
MTNMEKEILLLISRVRCVTESQFRKIYGDQKRYNKKNFKKTLRKMCSEYTLKKYPCDVDYYNYKDLSYVYYLNGSKLFKGDDLIKALVGSELVVRINTAGCDVKRFYRNVSVDDVKYDLFIEYTDQFGNIKQVLVDVDLNNEIDISKYENLSKKIDKSTIPFFKVPNVLVVTPDNLSELNDLERYDNEYSINFIDLGLNKLFNCI
>CP012309.1|AXU72059.1|2251407_2253108_-|hypothetical-protein
MKRYLKTYGVALIIVIIYAFIKLPVLRLDFTSLFSVGIIFFVVAGILDMMLDRNERASKMAKYNFSIAIALLVYIVVVPFITSTPVLHAKSYRELLGKVTESKFTDDISPVSVNDIRLVDEDMAMKLGDKKLGEVPAIGSVSKLGKFHIQNVDGELYWVAPLVHRDIIKWITSLSGTSGYVKVSASNPQDVQLVQEIDGKPIKIVYQPEAYLHQDLQRHLYIHGIVNVGMTDFTLEINDEGRPYWVVSLYEHKIGYGGANATGIATVDAETGKINVYDVKNTPKWVDRIQPQSFVTDQIKDWGVYVNGFLNSVISEKGVLVPTEGTSLVYGNDNRSYWYTGITSSGGDESTIGFMLVDSRTKEARLYKQPGATETAAMKSAEGNVQEKNYEATFPVMYNILGQPTYVSSLKDKAGLVKRVAFVSVEDYNVLGIGEDKNEALRNYKDALESKGNDLKLDNDLKDEVLEGTVTRISPDVRGGNTNYYVTLDSNKDIIFRATSKVSSELPLTQVGDKVKISYSKEESGVIEMSEFDNLNIANFEDKKAKEKTGTDENTDSKDSENQGNV
>CP012309.1|AXU72060.1|2253504_2254068_-|hypothetical-protein
MNKVYIVTTYTGTILSYLIRNISKKLYTHVSISLNENLKPMYSFGRLNPRNPFIGGFVEENINQGLYAIRKNTVCRVYSLEVDNLQYENLYKNIKLISDYREDYYYDTMALIYLLMNIQRQSEYKYVCSNFVADMLEKSEIDILNKQAFEVTPNDFYNLSGLTLEYEGLLSEYNSRQHSYVSKIANI

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Crispr_ID: CP012309_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_14

2600653-2601339

TypeV-U4

I-A

Consensus_repeat	Method
ATTTACATTCCATATAGTTAATCTAAAAC	CRISPRCasFinder
ATTTACATTCCATATAGTTAATCTAAAAC	CRT
GTTTTAGATTAACTATATGGAATGTAAAT	PILER-CR

10 spacers

c2c9_V-U4

The CRISPR arrays of CP012309_14

>merge|CP012309|14|2600653-2601339|CRISPRCasFinder,CRT,PILER-CR
ATTTTAAATCCACATAGTTAATCTAAAACACAATTATTAATTGTTTTATTAGTGAAATCACAGCAATTTACATTCCATATAGTTAATCTAAAACTGTCAATTTCTCTAGTAGATAAATAGTCATACCCTGAATTTACATTCCATATAGTTAATCTAAAACCATTCATGGAGATTGCTCAAAATACAGATGCTATAAATTTACATTCCATATAGTTAATCTAAAACCAGAATGAGAAGTGGATTTATTCTGAAACAATAAAGATTTACATTCCATATAGTTAATCTAAAACCAGATTTTCAACCTCCTTTTGATGTTCCAAGTAGTAGATTTACATTCCATATAGTTAATCTAAAACGAGAACTGGAGAAATATATAATTGCATAAAATCAGAGAATTTGCATTCCATATAGTTAATCTAAAACCTTGTTTCTTCTGTTAATTTTATTATACCTTGTTTATTTACATTCCATATAGTTAATCTAAAACATTTTAATTTTTATACACCATTAGCAATATCTTTAGCTAAATTTACATTCCATATAGTTAATCTAAAACGGTGCTATTGTAAGAATGTTAACAACCGAGTATGGTAATTTACATTCCATATAGTTAATCTAAAACACCAGCAACTATTCCACCATTCGCAGAACTAGCAATATTTACATTCCATATAGTTAATCTAAAAC

>CP012309|14|13|2600653-2601339|CRISPRCasFinder
ATTTTAAATCCACATAGTTAATCTAAAAC	ACAATTATTAATTGTTTTATTAGTGAAATCACAGCA
ATTTACATTCCATATAGTTAATCTAAAAC	TGTCAATTTCTCTAGTAGATAAATAGTCATACCCTGA
ATTTACATTCCATATAGTTAATCTAAAAC	CATTCATGGAGATTGCTCAAAATACAGATGCTATAA
ATTTACATTCCATATAGTTAATCTAAAAC	CAGAATGAGAAGTGGATTTATTCTGAAACAATAAAG
ATTTACATTCCATATAGTTAATCTAAAAC	CAGATTTTCAACCTCCTTTTGATGTTCCAAGTAGTAG
ATTTACATTCCATATAGTTAATCTAAAAC	GAGAACTGGAGAAATATATAATTGCATAAAATCAGAGA
ATTTGCATTCCATATAGTTAATCTAAAAC	CTTGTTTCTTCTGTTAATTTTATTATACCTTGTTT
ATTTACATTCCATATAGTTAATCTAAAAC	ATTTTAATTTTTATACACCATTAGCAATATCTTTAGCTAA
ATTTACATTCCATATAGTTAATCTAAAAC	GGTGCTATTGTAAGAATGTTAACAACCGAGTATGGTA
ATTTACATTCCATATAGTTAATCTAAAAC	ACCAGCAACTATTCCACCATTCGCAGAACTAGCAAT
ATTTACATTCCATATAGTTAATCTAAAAC

>CP012309|14|8|2600653-2601339|CRT
ATTTTAAATCCACATAGTTAATCTAAAAC	ACAATTATTAATTGTTTTATTAGTGAAATCACAGCA
ATTTACATTCCATATAGTTAATCTAAAAC	TGTCAATTTCTCTAGTAGATAAATAGTCATACCCTGA
ATTTACATTCCATATAGTTAATCTAAAAC	CATTCATGGAGATTGCTCAAAATACAGATGCTATAA
ATTTACATTCCATATAGTTAATCTAAAAC	CAGAATGAGAAGTGGATTTATTCTGAAACAATAAAG
ATTTACATTCCATATAGTTAATCTAAAAC	CAGATTTTCAACCTCCTTTTGATGTTCCAAGTAGTAG
ATTTACATTCCATATAGTTAATCTAAAAC	GAGAACTGGAGAAATATATAATTGCATAAAATCAGAGA
ATTTGCATTCCATATAGTTAATCTAAAAC	CTTGTTTCTTCTGTTAATTTTATTATACCTTGTTT
ATTTACATTCCATATAGTTAATCTAAAAC	ATTTTAATTTTTATACACCATTAGCAATATCTTTAGCTAA
ATTTACATTCCATATAGTTAATCTAAAAC	GGTGCTATTGTAAGAATGTTAACAACCGAGTATGGTA
ATTTACATTCCATATAGTTAATCTAAAAC	ACCAGCAACTATTCCACCATTCGCAGAACTAGCAAT
ATTTACATTCCATATAGTTAATCTAAAAC

>CP012309|14|6|2600718-2601339|PILER-CR
ATTTACATTCCATATAGTTAATCTAAAAC	TGTCAATTTCTCTAGTAGATAAATAGTCATACCCTGA
ATTTACATTCCATATAGTTAATCTAAAAC	CATTCATGGAGATTGCTCAAAATACAGATGCTATAA
ATTTACATTCCATATAGTTAATCTAAAAC	CAGAATGAGAAGTGGATTTATTCTGAAACAATAAAG
ATTTACATTCCATATAGTTAATCTAAAAC	CAGATTTTCAACCTCCTTTTGATGTTCCAAGTAGTAG
ATTTACATTCCATATAGTTAATCTAAAAC	GAGAACTGGAGAAATATATAATTGCATAAAATCAGAGA
ATTTGCATTCCATATAGTTAATCTAAAAC	CTTGTTTCTTCTGTTAATTTTATTATACCTTGTTT
ATTTACATTCCATATAGTTAATCTAAAAC	ATTTTAATTTTTATACACCATTAGCAATATCTTTAGCTAA
ATTTACATTCCATATAGTTAATCTAAAAC	GGTGCTATTGTAAGAATGTTAACAACCGAGTATGGTA
ATTTACATTCCATATAGTTAATCTAAAAC	ACCAGCAACTATTCCACCATTCGCAGAACTAGCAAT
ATTTACATTCCATATAGTTAATCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU72349.1\|2594771_2594930_-\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP012309.1\|AXU72358.1\|2600309_2600462_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72362.1\|2603139_2603472_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72368.1\|2607995_2608229_-\|transposase-IS3/IS911-family-protein	unknown	unknown	gnl\|CDD\|225511
CP012309.1\|AXU72357.1\|2599823_2600189_-\|phage-related-regulatory-protein	unknown	unknown	gnl\|CDD\|214989
CP012309.1\|AXU72369.1\|2608390_2608741_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372251
CP012309.1\|AXU72356.1\|2599374_2599827_-\|prophage-antirepressor-related-protein	unknown	unknown	unknown
CP012309.1\|AXU72355.1\|2599161_2599323_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72350.1\|2595148_2595382_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
CP012309.1\|AXU72352.1\|2595797_2595998_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72351.1\|2595365_2595779_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72354.1\|2598368_2598833_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72365.1\|2605031_2605223_-\|repressor	unknown	unknown	gnl\|CDD\|367747
CP012309.1\|AXU72366.1\|2605327_2605705_-\|regulatory-protein	unknown	unknown	gnl\|CDD\|367747
CP012309.1\|AXU72361.1\|2602713_2602866_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72353.1\|2596247_2597903_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187706
CP012309.1\|AXU72363.1\|2603498_2603768_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72367.1\|2606509_2607004_+\|pilin-protein	unknown	unknown	gnl\|CDD\|130771
CP012309.1\|AXU72360.1\|2601605_2602520_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378276
CP012309.1\|AXU72364.1\|2603901_2604333_-\|transposase-like-protein-B	c2c9_V-U4	-	gnl\|CDD\|284650

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU72350.1\|2595148_2595382_+\|transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	1.08383e-19
CP012309.1\|AXU72349.1\|2594771_2594930_-\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.41271e-09
CP012309.1\|AXU72368.1\|2607995_2608229_-\|transposase-IS3/IS911-family-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00555669
CP012309.1\|AXU72366.1\|2605327_2605705_-\|regulatory-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	4.72292e-07
CP012309.1\|AXU72369.1\|2608390_2608741_+\|hypothetical-protein	gnl\|CDD\|372251	pfam12676, DUF3796, Protein of unknown function (DUF3796). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.	1.22368e-34
CP012309.1\|AXU72364.1\|2603901_2604333_-\|transposase-like-protein-B	gnl\|CDD\|284650	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain. This putative domain is found at the C-terminus of a large number of transposase proteins. This domain contains four conserved cysteines suggestive of a zinc binding domain. Given the need for transposases to bind DNA as well as the large number of DNA-binding zinc fingers we hypothesize this domain is DNA-binding.	1.13083e-23
CP012309.1\|AXU72357.1\|2599823_2600189_-\|phage-related-regulatory-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	2.31913e-23
CP012309.1\|AXU72365.1\|2605031_2605223_-\|repressor	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	3.07874e-09
CP012309.1\|AXU72367.1\|2606509_2607004_+\|pilin-protein	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.68762e-14
CP012309.1\|AXU72360.1\|2601605_2602520_-\|hypothetical-protein	gnl\|CDD\|378276	pfam09851, SHOCT, Short C-terminal domain.	8.85784e-07
CP012309.1\|AXU72353.1\|2596247_2597903_-\|hypothetical-protein	gnl\|CDD\|187706	cd09302, Jacalin_like, Jacalin-like lectin domain. Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. Taxonomic distribution is not restricted to plants, the domain is also found in various mammalian proteins, for example.	5.90238e-12

>CP012309.1|AXU72358.1|2600309_2600462_-|hypothetical-protein
MKNRRKDKRGFSVLLDKEKLDKFDEVLEEKNLTKKEWLEEKIDEELEQKE
>CP012309.1|AXU72357.1|2599823_2600189_-|phage-related-regulatory-protein
MKNELMMFEGKEIEVFEFEGRILFNSKDVANCLDIKNVNENIRLMNKKQVVKLRNSDISNTDIRKLNNAGENFLTESGVYKLIFKSRKEEAERFQDWISDEVLPSIRQTGAYITNNAIPKS
>CP012309.1|AXU72356.1|2599374_2599827_-|prophage-antirepressor-related-protein
MREKASEIEKLQLAYNSTSMLKELLDDAGFDNKSKLLTAKTLYKKAGIDLPIEINEEEHYFDTKQIASKLKIYSKSNKPAQMAVCEIIKKIDLEDGEVKGVWETNGSWTGTVNKYTKSVIDKVRTWIEENNRPTKIAGEKKNYHVFYKIE
>CP012309.1|AXU72355.1|2599161_2599323_-|hypothetical-protein
MCENLLDNMYIEKRKEEYRIKLLKIRETDIDIYNKLESIVYKLSEKKLEKNNK
>CP012309.1|AXU72354.1|2598368_2598833_+|hypothetical-protein
MDFGEVKSELSDKDLKDNEEDLNKYKKYYLKVYKYYSEMDSIKSIQDIEIEQSRLKGQLQKNSNPIFALYISIMAVVFSTTINLTFDLSDITNYFIRMIMTLLFIVLLIFLVNKGILPIAIPYKNNIQFYTTALDVLEDMKKKILRERKYKKRR
>CP012309.1|AXU72353.1|2596247_2597903_-|hypothetical-protein
MNLDFHYYGTYLAAKIAGYNDSDAKTIAYAAQYVDESSKNMILDDVNFAFPTIQTNSEFQKYYADFNSWGYKWNLDSLNEIKKVWIPFHFLPGNLNNQVKYNGVKESKGLTTNWKFKDGDDQTFRLMCLPNSETVSAIINDLIYFHSTEEYKLQFIGMRMHVLADTWAHVYFIGKPEWYINDIKEFIAEESKYIEETKWTKAEEYRNGSWHAINFTGTPDAGGYESISYLGHGRIGHLPDYGYLNYRYVPNWSCTDDKVKIQKNNQDNFFKAFCQMVYALKCIKNGNDFSINQYDNLTAQQKTEVSKVIATRKDDQSEAWKKAIQTLGYKSLENFDKNKWKNEFIKSTNKEKTDYYYFNLVAKKHVDYVIDFLEEKRLPLEEMCSKYCEFKTFDDTQFAKNRNRVTKIILRGAYIVDAIQLVYDGKYKTPMHGETLGGSMVSLDLEADDYIVKISGSIGLYEGGEPYPNSPTRTIGKITFLTKKGKTITAGRETMFKSYGNFTLEPPTGKQIFALQGSYLIRKLRAETNKRYLDCLGIASIKDCSVVTSTK
>CP012309.1|AXU72352.1|2595797_2595998_+|hypothetical-protein
MYFKTYILKREVNNKQLEITRSFDLDNLICTATEILEDIEIDLIIIDEKNNVVWRNEKSTPAHENA
>CP012309.1|AXU72351.1|2595365_2595779_+|hypothetical-protein
MKVKSKRSFIVGIIVCMLCCASLVIYCILKDKRFLISSFLLIVIAIFNFCNAFSRKGIVEELHDSTDERDLYLTMKTSHILVKIMNYTLFTFTFLFIIAYSAWKNQSLLVIAITLCVIEIFLFVAYLLINIFLEKKE
>CP012309.1|AXU72350.1|2595148_2595382_+|transcriptional-regulator
MKTKVREFRTNMGLTQQQLADLVHVSNRTIISIEKEQYSPSLMLAYRMAQVFGTTIEELCCLKENKEMEDKKHESKE
>CP012309.1|AXU72349.1|2594771_2594930_-|regulatory-protein
MKISKLSEAELKVMRYIWEANKVLTSRELVAAMEEKYEWNESTTFTVLKRLE
>CP012309.1|AXU72360.1|2601605_2602520_-|hypothetical-protein
MVGAFVLPNYAITLSEMSNLWGNFTMWILVPIVLLIIAVSSMQYILVMIAFLLIIYSFIEKKIVMALVSVLFFTYSIYICATWEDKSLIADNKVETVKAQRETVEREKEMERRRIQEEVDKERYIEKHGMEISENDLKVKLEALVPQEYKGKKYELKVEKFKRYSMYFDLTVQNEKFSNSEECKKFVKEIANDFKKIKISKAYFKFHSKDDGGIYNSVYIDYFRNIQNNVDNVENLGFNEFKLKTEEEEKREQEKIEQEKNSYNNYIQNRVVDPLDRIKKLKELLDSGAITQEEYNKKKKELLE
>CP012309.1|AXU72361.1|2602713_2602866_-|hypothetical-protein
MDNFLFNVLASVTASYIVYLISKLIKKVKSHSTAKSDLKIDINFKYHRKK
>CP012309.1|AXU72362.1|2603139_2603472_-|hypothetical-protein
MNDMARDVFSVKMTPLEAQKMVEKNLEADLVSVDIYNLENNKSIIVTIFEKYYARSNSDAGLVVICENTTGKTLVKITSTGSAIGLFQIDWGTGNNLIKRVKKILIDYII
>CP012309.1|AXU72363.1|2603498_2603768_-|hypothetical-protein
MRGVFIENKDIKLTICIFAFVIGIIVLFCCIGLGQFNMDCIIKQNGGSIATEQYNIYLEQSISQYRNFGSILVLLGGIGILFDKSVRKY
>CP012309.1|AXU72364.1|2603901_2604333_-|transposase-like-protein-B
MIRNRKLSRSISDVSWSEFIRQLEYKANWHGRQIVKVGKFFASSQICNKCGYKNEEVKDLNIREWIYPSCNETHDRDINASINILKEGLRLNCIQKLKWKPSEYMNLEVNERALAADSILIKIEDEEEAMKEAEREKKRGRRR
>CP012309.1|AXU72365.1|2605031_2605223_-|repressor
MKISKLPEAELKVMRYIWESEKVLISREITKSMEQKYEWKDTTIFTVLKRLLKKRVFRNGENR
>CP012309.1|AXU72366.1|2605327_2605705_-|regulatory-protein
MKEEILIEKLLRVELIVMEYLWKKDTLMPKKEIVKEIKQIYGWHKSTIKILLKRLVNKRYLARYIINFQSYYKIIIDSKEYYTFKKKVLKSSKSIKIMHSLTTIHKNVSKEKLDLLDEYYRNLKE
>CP012309.1|AXU72367.1|2606509_2607004_+|pilin-protein
MKNKKGFTLVELLVVIAIIGILAIVALPALFKNIEKAKIAKLEADISAIKSASLSYYADESKYTDGGMISWVKKDGKIIINGGFKDDPLADKIENLGMPYNGSYLLMSSPGHEKYLELSILPEGEISKSGLDKLKSDYGSSIDIMNEQNKIDIVIKLLNDKSNT
>CP012309.1|AXU72368.1|2607995_2608229_-|transposase-IS3/IS911-family-protein
MTKYDFNFKLKVAKFYLNREGRDILIVKQYGVYDHSQVERWVNILGESALKIKKIFYTIWFKLDVINYMMITKYSVQ
>CP012309.1|AXU72369.1|2608390_2608741_+|hypothetical-protein
MIQKKFFMGFCGFLGFLSLRYFSSGNVADLTYIGFFAFFSNFIIAKINGDKADERYVQDEKAAMAFTGQLAIIELFILWCITIVSRNVELMCVLLSITYAITLNVYAIKLYILEEK

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Crispr_ID: CP012309_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_15

2765900-2766057

Unclear

Consensus_repeat	Method
AGGTTTAAGATTAACTAAGTGGATTTCA	PILER-CR

2 spacers

cas3,cas5,cas7,cas6

The CRISPR arrays of CP012309_15

>merge|CP012309|15|2765900-2766057|PILER-CR
AAATCCGATTAGTTAATTTTAAACCTAATAATAAAACTTCTATTATATCTACTATATCAATATTTGAAATCCACTTAGTTAATCTTAAACATACAAAATCTCCAACTTATAATTATTTTCGCGATGTACCTGAAACCCACTTAGTTAATCTTAAACCT

>CP012309|15|7|2765900-2766057|PILER-CR
AAATCCGATTAGTTAATTTTAAACCTAA	TAATAAAACTTCTATTATATCTACTATATCAATATTTG
AAATCCACTTAGTTAATCTTAAACATAC	AAAATCTCCAACTTATAATTATTTTCGCGATGTACCTG
AAACCCACTTAGTTAATCTTAAACCT

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU72516.1\|2762340_2762691_-\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
CP012309.1\|AXU72522.1\|2769446_2770460_-\|CRISPR-associated-autoregulator,-Cst2-family	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
CP012309.1\|AXU72517.1\|2762733_2764032_-\|radical-SAM-superfamily-protein	unknown	unknown	gnl\|CDD\|223694
CP012309.1\|AXU72518.1\|2764033_2764792_-\|16S-ribosomal-RNA-methyltransferase-RsmE	unknown	unknown	gnl\|CDD\|236959
CP012309.1\|AXU72521.1\|2768633_2769431_-\|CRISPR-associated-protein-Cas5,-subtype-I-B/TNEAP	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
CP012309.1\|AXU72526.1\|2774093_2774861_+\|sugar-diacid-utilization-regulator	unknown	unknown	gnl\|CDD\|379258
CP012309.1\|AXU72512.1\|2760161_2760725_-\|sigma-54-modulation-protein	unknown	unknown	gnl\|CDD\|238308
CP012309.1\|AXU72514.1\|2761525_2761969_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|370480
CP012309.1\|AXU72527.1\|2775048_2776422_-\|transporter	unknown	unknown	gnl\|CDD\|129794
CP012309.1\|AXU72510.1\|2758356_2759700_-\|stage-IV-sporulation-protein	unknown	unknown	gnl\|CDD\|377731
CP012309.1\|AXU72525.1\|2772954_2774064_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
CP012309.1\|AXU72523.1\|2770479_2771955_-\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72528.1\|2776457_2777393_-\|glucokinase	unknown	unknown	gnl\|CDD\|224851
CP012309.1\|AXU72511.1\|2759712_2759949_-\|sporulation-protein-YqfC	unknown	unknown	gnl\|CDD\|377934
CP012309.1\|AXU72513.1\|2760917_2761415_-\|sensory-protein	unknown	unknown	gnl\|CDD\|320706
CP012309.1\|AXU72529.1\|2778358_2779513_-\|chaperone-protein	unknown	unknown	gnl\|CDD\|236757
CP012309.1\|AXU72515.1\|2761998_2762178_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP012309.1\|AXU72520.1\|2766198_2768607_-\|ATP-dependent-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
CP012309.1\|AXU72524.1\|2771959_2772697_-\|CRISPR-associated-Cas-family-protein	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
CP012309.1\|AXU72519.1\|2764810_2765758_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU72516.1\|2762340_2762691_-\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	1.77543e-54
CP012309.1\|AXU72522.1\|2769446_2770460_-\|CRISPR-associated-autoregulator,-Cst2-family	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	4.94989e-19
CP012309.1\|AXU72517.1\|2762733_2764032_-\|radical-SAM-superfamily-protein	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	3.32229e-179
CP012309.1\|AXU72518.1\|2764033_2764792_-\|16S-ribosomal-RNA-methyltransferase-RsmE	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	7.40285e-85
CP012309.1\|AXU72521.1\|2768633_2769431_-\|CRISPR-associated-protein-Cas5,-subtype-I-B/TNEAP	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.66805e-10
CP012309.1\|AXU72526.1\|2774093_2774861_+\|sugar-diacid-utilization-regulator	gnl\|CDD\|379258	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain. This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Bacillus subtilis pucR and is likely to be DNA-binding.	3.71654e-15
CP012309.1\|AXU72512.1\|2760161_2760725_-\|sigma-54-modulation-protein	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	1.43831e-27
CP012309.1\|AXU72514.1\|2761525_2761969_-\|tRNA-binding-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	3.14843e-57
CP012309.1\|AXU72527.1\|2775048_2776422_-\|transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.94143e-34
CP012309.1\|AXU72510.1\|2758356_2759700_-\|stage-IV-sporulation-protein	gnl\|CDD\|377731	pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.	1.19341e-106
CP012309.1\|AXU72525.1\|2772954_2774064_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
CP012309.1\|AXU72528.1\|2776457_2777393_-\|glucokinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.61583e-66
CP012309.1\|AXU72511.1\|2759712_2759949_-\|sporulation-protein-YqfC	gnl\|CDD\|377934	pfam07873, YabP, YabP family. This family of proteins is involved in spore coat assembly during the process of sporulation.	1.14572e-12
CP012309.1\|AXU72513.1\|2760917_2761415_-\|sensory-protein	gnl\|CDD\|320706	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family. This family contains tryptophan-rich translocator protein (TSPO), an integral membrane protein that is highly conserved from bacteria to mammals. In eukaryotes, it is mainly found in the outer mitochondrial membranes of steroid-synthesizing cells of the nervous system where it transports cholesterol into mitochondria. It is known to be highly expressed in metastatic cancer, steriodogenic tissues, as well as inflammatory and neurological diseases such as Alzheimer's and Parkinson's. TSPO is also known as the peripheral benzodiazepine receptor (MBR) and its ligands include benzodiazepine drugs, implicated in regulating apoptosis. In human, a single polymorphism A147T is associated with psychiatric disorders; the mutation causes structural changes in a region implicated in cholesterol binding. TSPO is homologous to bacterial tryptophan-rich sensory proteins, and their tryptophan residues are believed to be functionally important. In bacteria, TSPO acts as a negative regulator of expression of specific photosynthesis genes in response to oxygen/light; it catalyzes a photooxidative degradation of Proto porphyrine (PpIX). R. sphaeroides TSPO (RsTSPO) is involved in porphyrin transport, similar to human, while Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism.	1.41313e-43
CP012309.1\|AXU72529.1\|2778358_2779513_-\|chaperone-protein	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
CP012309.1\|AXU72515.1\|2761998_2762178_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.30053e-12
CP012309.1\|AXU72520.1\|2766198_2768607_-\|ATP-dependent-helicase	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	2.33247e-42
CP012309.1\|AXU72524.1\|2771959_2772697_-\|CRISPR-associated-Cas-family-protein	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	5.03192e-16
CP012309.1\|AXU72519.1\|2764810_2765758_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	5.34054e-110

>CP012309.1|AXU72519.1|2764810_2765758_-|50S-ribosomal-protein-L11-methyltransferase
MNNWIEVTIKTTTEAVEPITNILYEQGAGGAVIEDPKDFLFQKKNELDWDYVEEEVFKKNEEDDVLIKTYVSEEKNVMEFVEIIKQKVLGLKDFGIDIGEGSVSLDQVNEADWANAWKAYYKPTKVGQRVVVKPTWEDYAMQEGDLIIELDPGMAFGTGTHETTSMCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLENKVEKSVSVMHGNLTDVIKDKADVIVANIIADIIKILAKDVQNFMKEDAIFISSGIILDKVEEVKESLIENGFEIVEVQKLGEWSAIVSKLKK
>CP012309.1|AXU72518.1|2764033_2764792_-|16S-ribosomal-RNA-methyltransferase-RsmE
MDRFFVEKNNINLQDKTCTIEGEDVKHISKVLRCKLGEKLEICDKNNNEYICEIMNIDKSIVNLEILEKVDINRESELKVRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVVKVDDKKEDKKFERWERIIYEAAKQSKRGKIPKLRGVLSFKEALEDMKKNNVNICPYENERTVSIKHALKKCDSNIDSVGIFIGPEGGFSEEEIEQIQKNNCNVVSLGPRILRTETASVVASTIALYELSDLGGEK
>CP012309.1|AXU72517.1|2762733_2764032_-|radical-SAM-superfamily-protein
MKKVAFYTLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKKNPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVDDIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEVKKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTDEFVNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITTDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQLLNLSKVNFNKFATKFIGRELDVLFEQNIEGNKYEGLTSNYIRVVVESDKNIQGQILKVKINDVKDEYVEGILL
>CP012309.1|AXU72516.1|2762340_2762691_-|histidine-triad-nucleotide-binding-protein
MDCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAGQN
>CP012309.1|AXU72515.1|2761998_2762178_-|30S-ribosomal-protein-S21
MSEVRVRENETLDSALRRFKRQCAMSGIMSEVRKREHYDKPSVKRKKKAEAARRKNAKK
>CP012309.1|AXU72514.1|2761525_2761969_-|tRNA-binding-protein
MSLKQKLQEDLKSSMKNKDTVRKSVVTLIRASIKQYEVDNRVELDEDGIIDVIAKQLKQRRDALVEFEKAGREDLIKETEGEIEVLKEYLPQQLSEEELEEIVKSTISEVGATSMKDMGKIMSVIQPKVKGRADGKLINKLVKQNLQ
>CP012309.1|AXU72513.1|2760917_2761415_-|sensory-protein
MIISVKEIRNFLINIFIPLIIGYLSSILTMIISGTDISTYYLQLTKPSFAPPAFIFPIVWTILYILMGISSYLILRKGYNLPKVRDAIFYYGLQLVLNFIWSILFFGFGLRFTALIDIIIMILVSIIMISKFSKIDKRSGYINLIYLMWLVYAGFLNYFIWFINK
>CP012309.1|AXU72512.1|2760161_2760725_-|sigma-54-modulation-protein
MQIIVSGRQMKLTDGIKGYVDGKLSRLEKYLDPESEVKVTVSAKKDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKSIRFENLDFIDNSSEFDDYDYDDEEDENIVIERRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDNFEINIVYKRKAGGYGLIEQD
>CP012309.1|AXU72511.1|2759712_2759949_-|sporulation-protein-YqfC
MLEISTDLQVNQPVITVTSNTFISIENYLSILEYEVDLIRIKTKVKTIKISGDKLSLKYITDSEIGIKGIIYNVEYVD
>CP012309.1|AXU72510.1|2758356_2759700_-|stage-IV-sporulation-protein
MISFIRGYYVIVVEGVGLEQFLNHLIRNGISVYNVTRIKNTKMEFHIDRQDIKEFKNVYRGSKFDIKVKQKTGIPFIIKRVYKHKGMWICALVSLFLLMSTSQFVTDVYIQSPEGIKKEALRNELYKVGVRPGVYKKSIDRKEVRDHMMSKFNDVAYLSINVKGTNIFVTVTKKAESLKSTDQSNYCNVIALKNGIIEKVIPRSGKSVIKSGDIVQKGDVLLNGANTKSIPEVWASTFYESTKKASYVDTVNKKTGEKKNIYTLSFYDKEFTMRKNIKYKDYVVENKEKKLSIGNYTFPIKIKTSTFYETKKVEVKRNKEELKKELSEKALKELEYIIPASARIIDVKHNFKVNKNMLEYLITVQTSENIAKIYPLSKSEAERFIKEESKPDEGEEEVPSNPEKRPLNDIRNEFDEDNKDNKDQNNSDENNSNQNSNNSQNNNSNNN
>CP012309.1|AXU72520.1|2766198_2768607_-|ATP-dependent-helicase
MKNIMQKEILAKSYNLRTNQQEQTLVEHIKDLFEVLESILELNLYSDKDVEILKICCALHDLGKINSIMQQKIEINNKIAYSCSEEERKKLESDKKSLKKIARHNIFSGAFLKDILEKMNLSEEDKLYIYKSIMLHHGNYEDYMRLSTSKVQKEIYDYIEKGILEKEDFNLEDIEDYIKEILYVDFKFNEDVLDYDYIDKLSESMVIDSDYNNGQIEDSVLNYRKFKYILYKGMLNLIDHSASSRQKGIKFYNDFTDEEIDNMILSEIYKSQGNLEKNNIKFNTIQKRLRELSGRNVLTVAFTGSGKTAADYRKTFKRKFFLVPNKISAESFYRKNIFQNKNDLDTRSSNDYIGLLHGDINLYSENEDNGEHDFVLTLRDIDLSINFCKPCVIATVDQLLLSMFKFPGYEKIFAAVKNASITVDEVHLLEPKMFLILIYFMQFACKYLDVDFHLMTATLPKSYKEQMINKGIIFQEESNENVTDKGEIVFIESNKEEEICEGKDVKVSFIKEKEIKSIVEDALENKQKILIIKNTIDSVNRTYEFLKENLSDKYGGVDIDVLHSRFKFKDKKEKYSKILNGEGDIWISTQSVEISLDLDFNIIISDLATMDSLIQRMGRCNRNNKYEYGNFYILPSEDKIYDNKLKSTTKNILKDILKTNSIFTMGIRKTILDDYYDNSVVKKYFEENFISCDKEIKNIYGVNKEIFDGLDLIFNFEPYKNIVDSKKEAAKIFRDVDVSYKIILEEDFYKEDRELQQDSIQVSGFIFNRLYYYGLISKVEGYMVLKSSSKFEYNSTVGLILK
>CP012309.1|AXU72521.1|2768633_2769431_-|CRISPR-associated-protein-Cas5,-subtype-I-B/TNEAP
MKVLQCKLKQPTAHYRDPKVFQNEYISTLNLPSKTTIMGMITYLCDRRLNSDIDIGIIGTHHHRELEFSRGENIDFWNEYTNMRKGKDKEKFLLKGNYYDYYKEHKAQNSILNYEVLKEVELTIFISCKDDEELEFIRKKLESPCKYANLGRKEDFAIPSEKGCFVKEVELKEVIPMNTRDAIKENIKLKNTYVRVDLRDKENVETIINQGVLIALPHKYKDLEANRDDRVYEFCHYIYVDNDGIYPKNIKVNVCIDTKEVFTWL
>CP012309.1|AXU72522.1|2769446_2770460_-|CRISPR-associated-autoregulator,-Cst2-family
MNEKRVKGVTLTILTESPVPLSYDQGYGNYTPIKKEQYREKIHAKTSIATITYDLRRMLHQEYGWNLSNIVFGKKGNIYPSIKKNVGCVDENGLETDVFGYLIPLKDKGSISKASPLRIIPFRSLNPYKGSTQLITNRGFLSSEFGRKYYDEKEENEVPRDENFPTSQALAIEETLSDYYVYTITLELDRIGVVEVEDGKLLLPEERKFMSKELREKAVKDILDAITVFTRNIKHSSVLLKPLAVIGGAFDKVVPFFWDDVDYNADSGEINLEGVIETIESYSLKESNTILAINDRLKISNKKELNKFNLSKYPVKEIKNLADRLEIGEDNMWYLKE
>CP012309.1|AXU72523.1|2770479_2771955_-|hypothetical-protein
MREIKAKFYRSGDIVRDIGIVYFYELLMDLKNELEKNDYKLKFTCELNRNYLSLESAEYIEPKYISDYILENQLFKVFKNGKKETLEKIFSNIDNLTYVNFIEELDKSSATAKQKEDIKKDFKNRRFPYVRNSGKYGLNTSLKNMETNVKRIVDTVIKSNIEIDEIDKLDLTQYEEKDSVCNVCNINKTTKLDIDLRERKDSKYNFLFRGAEKSGFKRSGQVESNICFECEFFNLMCLLYINLKRPMVFAYTNDLRELAFLNHKIMLKRKMYSDKSFYKKLLHEKISSIRLYRFDIDTNKGIILKFDSIIEYKELLKKIELIDIIDNYNFSREPGNTRNLGKRMIDNGNLSNLKELLLDNISVLKQSTGTSREMDFVSSSYNIGLYIKLCWIVDGGEEYKMKNYMESNLIYSRVGKDLFNKMTDESRRKNFSMKVIQLLKSNDRTQLFQTIMHVLVSNGILIGEGFVEGLMQSSELELNTNVGLFIQEIMK
>CP012309.1|AXU72524.1|2771959_2772697_-|CRISPR-associated-Cas-family-protein
MSRISIFMESCNGKFPNENSMLSVSFIKNILNAENKDFAKNIFNYGEERKNNKQIKDINTAIYIPNLIRSKNELLVDGDIIFNISFYNYSMFSKLYNGILKVKELEYKGYRFKIKNIKIHKEHEIKENGVIFKTMSPIIVKNKEGKYLDVEDSNYIECLNYIANLTLESIRGSGLRKPLEFIPLNFKKRVLKEKIRGFKVREYYYINAYAGTFFLKGNMEDLNALYKMGIGYRRTENAGMVDILK
>CP012309.1|AXU72525.1|2772954_2774064_+|ABC-transporter-ATP-binding-protein
MSEVILKNISKLYSNGFNAVKNINIDIKDKEFIVLVGPSGCGKSTTLRMIAGLEEISEGELYIGDKLVNDIEPKDRDIAMVFQNYALYPHLSVYENMAFALKLRKLPKDEIDKKVKEAAKILDLLPLLNKKPKTLSGGQRQRVALGRAIVRNPKVFLMDEPLSNLDAKLRTAMRTEITKLHQQLGTTFIYVTHDQVEAMTMADRIVVMKDGVVQQIATPQDVYDYPANIFVAGFIGAPQMNFIDVILIEENDEIYAQNEHIKLKLNKEKHYDLIKDNYINNEVVIGIRPEDIHVEDTFIKSNPDTCFKSRIEIKELMGAETYAHLKLGENTITIRFDSKNRINVGDDLTLSVDNSRVHIFDKETTLAIR
>CP012309.1|AXU72526.1|2774093_2774861_+|sugar-diacid-utilization-regulator
MEELKDFLERQLNKKINIYPYENQKLDASSHLVTFNNAIYVIDFLDKNNLDNLKGNFYLIYQSHIDFEYLKNIFYNLFEDINIIQHNGFFIVNSKYNLDINVTTQNIIETETYQSTYIFYLGKLDSKADFDFRLQLCSDLLPHIIKDNAENKFLNLFDLIRYKTLDLINEDNILNKLIDFNKIKSIDEELLYTGIKFINNDLNISKTSTSMFLHRNTLVYRLEKINEILGFDLKNFENAMIFYLSVKSYFLYKKI
>CP012309.1|AXU72527.1|2775048_2776422_-|transporter
MGKTNARRTLFLIAIGSGTMLNPLNSSMISLALHSIQNDFHISFTTVSWIVSAFYLASAIAQPVSGKIGDLIGRKVLFLSGLMLVILSASIVPLVQSFFILIFIRVIQAIGTSTLYPSGVALIQNNIKERQSSALAVLTIFASTTAGLGPTLGGLLLDLGGWHAIFLVNIPVVLVSICLGYFLFPKEVKEKKSIKETLKNVLSRLDIIGILLFSIAMIFILLFLLSMKESFNLEQLVFGIILMCLFIWHELRTKLPFIDIKLFVSNPKLSKVYLQFIILNFFNYILFFGLPSYFQDALHYSAKSTGLFMLFMSGIGIFISPLTGKWIDKSGTRFPLVTSSIFMFISAVLLSVVFIHIPVIGKGIILSLAGISYGVGNVALQSSMFEESPRDSIGTASGLFQTSRYLGSILATVLLGMVFEVNITSEQFQILGYVMVVLGTISFLLNFILKKELRKVE
>CP012309.1|AXU72528.1|2776457_2777393_-|glucokinase
MYYIGVDIGGTGIQAGVVDNYGKIIFRSECKTVIEKGFEGILNDIKIMIYKLLEDNKLTMSDIKSIGFGVPGFINKEGLVTCVNLKWNKKAFNKELKRRFPDVEIHGENDATVAALGEAKFGSMKGANVGVLYTLGTGVGGGIVINQKVFSGAHGLGSEIGHQIIGENYFNCNCGNNGCVETFCSATAIIKYSQKLIEEGEKSRILDLAEGNLENVNAKMVFDAYRENDLVAIKVINRFKEYLAKTFANTINSLDPEIISIGGGISKSSDIILDGIEDLVRKFVLYKTEDIATITCATLGSDAGIIGAAFL
>CP012309.1|AXU72529.1|2778358_2779513_-|chaperone-protein
MSTKRDYYEVLGISKGAEAQEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEINEAYEVLSDDTKRKTYDQFGHDGLNGQGGFGGQGGFGGQGFGGFEDMFGDIFGDMFGGSFGGGRARRRGPQRGADIRQSVTISFEEAAFGKKMSIKVNRSEECEECNGTGAKPGTSKKTCSTCNGTGQVRTVQRTPFGNIASSRPCSACNGTGEVIESPCSKCHGTGNTRKVKTIEVDIPAGIDDGQMIKLSGQGEVGEKGAPRGDLYIVVNVKSHPLFTRDGNDIYFEMPITFVQATLGDEIEVPTLDGKVKYSVPEGTQTGTVFRLKEKGIPRIRGNSRGDQYVKVVVEIPKKLNDKQKELLREFAKECGSNVHEKKKTFGQKIEDMFKKK

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Crispr_ID: CP012309_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_16

2847332-2847503

Orphan

I-A

Consensus_repeat	Method
GTTTTATATTAACTATATGGAATGTAAATTGTATCTGAATAA	PILER-CR

2 spacers

The CRISPR arrays of CP012309_16

>merge|CP012309|16|2847332-2847503|PILER-CR
TTTTTTGGATACAATTTACATTCCATATAGTTAATATAAAACTCAATTAAATTATGACCTTGGTTTAGATAGTTCATTATTTACATTCCATATAGTTAATATAAAACAGTAGATTTATCAAGATAAGAAGTTATTCAGATAGAATTTACATTCCATATAGTTAATATAAAAC

>CP012309|16|8|2847332-2847503|PILER-CR
TTTTTTGGATACAATTTACATTCCATATAGTTAATATAAAAC	TCAATTAAATTATGACCTTGGTTTAGATAGTTCATT
ATTTACATTCCATATAGTTAATATAAAACAGTAGATTTATCA	AGATAAGAAGTTATTCAGATAGA
ATTTACATTCCATATAGTTAATATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU72583.1\|2843563_2845192_+\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|163513
CP012309.1\|AXU72584.1\|2845312_2846308_+\|L-asparaginase	unknown	unknown	gnl\|CDD\|199208
CP012309.1\|AXU72582.1\|2841687_2842905_-\|threonine-dehydratase-catabolic	unknown	unknown	gnl\|CDD\|236182
CP012309.1\|AXU72578.1\|2838009_2839560_-\|PTS-system-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|273925
CP012309.1\|AXU72585.1\|2846781_2846880_-\|regulatory-protein	unknown	unknown	unknown
CP012309.1\|AXU72581.1\|2841212_2841593_-\|translation-inhibitor-endoribonuclease	unknown	unknown	gnl\|CDD\|129116
CP012309.1\|AXU72593.1\|2857522_2858161_+\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|234646
CP012309.1\|AXU72576.1\|2835671_2836451_-\|AraC-family-transcription-regulator	unknown	unknown	gnl\|CDD\|225080
CP012309.1\|AXU72587.1\|2848305_2849676_-\|cell-surface-protein	unknown	unknown	gnl\|CDD\|380277
CP012309.1\|AXU72588.1\|2851223_2851892_-\|vanZF-protein	unknown	unknown	gnl\|CDD\|377417
CP012309.1\|AXU72589.1\|2852743_2855164_-\|leucyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234743
CP012309.1\|AXU72590.1\|2855517_2855868_-\|iojap-family-protein	unknown	unknown	gnl\|CDD\|376779
CP012309.1\|AXU72579.1\|2839610_2840426_-\|transcriptional-antiterminator	unknown	unknown	gnl\|CDD\|170086
CP012309.1\|AXU72591.1\|2855984_2856557_-\|metal-dependent-phosphohydrolase	unknown	unknown	gnl\|CDD\|224627
CP012309.1\|AXU72580.1\|2840446_2840929_-\|PTS-system-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376324
CP012309.1\|AXU72592.1\|2856557_2857247_-\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
CP012309.1\|AXU72594.1\|2858313_2860317_+\|glycogen-branching-protein	unknown	unknown	gnl\|CDD\|215246
CP012309.1\|AXU72595.1\|2860490_2861132_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP012309.1\|AXU72577.1\|2836560_2837913_-\|6-phospho-alpha-glucosidase	unknown	unknown	gnl\|CDD\|133434
CP012309.1\|AXU72586.1\|2847788_2847947_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU72583.1\|2843563_2845192_+\|aspartate-aminotransferase	gnl\|CDD\|163513	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). [Energy metabolism, Amino acids and amines].	0
CP012309.1\|AXU72584.1\|2845312_2846308_+\|L-asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	8.27962e-141
CP012309.1\|AXU72582.1\|2841687_2842905_-\|threonine-dehydratase-catabolic	gnl\|CDD\|236182	PRK08198, PRK08198, threonine dehydratase; Provisional.	0
CP012309.1\|AXU72578.1\|2838009_2839560_-\|PTS-system-transporter-subunit-IIBC	gnl\|CDD\|273925	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.41453e-101
CP012309.1\|AXU72577.1\|2836560_2837913_-\|6-phospho-alpha-glucosidase	gnl\|CDD\|133434	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
CP012309.1\|AXU72581.1\|2841212_2841593_-\|translation-inhibitor-endoribonuclease	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	6.43782e-69
CP012309.1\|AXU72593.1\|2857522_2858161_+\|recombination-regulator-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	3.67554e-47
CP012309.1\|AXU72587.1\|2848305_2849676_-\|cell-surface-protein	gnl\|CDD\|380277	NF033435, S-layer_Clost, S-layer protein SlpA. In Clostridiodes difficile, the S-layer protein precursor, SlpA, is one member of a large paralogous family of protein that share several cell wall-binding repeats. SlpA is cleaved into a larger and smaller protein. The S-layer protein itself is important to adhesion, and portions of it are highly variable, and then N-terminal and C-terminal are well-conserved.	5.08924e-20
CP012309.1\|AXU72576.1\|2835671_2836451_-\|AraC-family-transcription-regulator	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	7.05126e-15
CP012309.1\|AXU72589.1\|2852743_2855164_-\|leucyl-tRNA-synthetase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
CP012309.1\|AXU72590.1\|2855517_2855868_-\|iojap-family-protein	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	7.43119e-49
CP012309.1\|AXU72579.1\|2839610_2840426_-\|transcriptional-antiterminator	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	9.99856e-52
CP012309.1\|AXU72591.1\|2855984_2856557_-\|metal-dependent-phosphohydrolase	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	4.17724e-52
CP012309.1\|AXU72580.1\|2840446_2840929_-\|PTS-system-transporter-subunit-IIA	gnl\|CDD\|376324	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1.	2.68291e-57
CP012309.1\|AXU72592.1\|2856557_2857247_-\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	9.36329e-79
CP012309.1\|AXU72594.1\|2858313_2860317_+\|glycogen-branching-protein	gnl\|CDD\|215246	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme.	0
CP012309.1\|AXU72595.1\|2860490_2861132_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.64096e-19
CP012309.1\|AXU72588.1\|2851223_2851892_-\|vanZF-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	2.00381e-18

>CP012309.1|AXU72585.1|2846781_2846880_-|regulatory-protein
MLNKKLPDAELKIMKYIWNTGYKTVISKDVAD
>CP012309.1|AXU72584.1|2845312_2846308_+|L-asparaginase
MSIKKKVAIVFTGGTISMTVDDKVGAAIPTLSGEQILSMVTNIDKVADVEVFNFDEIPGPHITPYRMMELKNYVNDLLARKDITGVVITHGTDSLEETAYFLDLTIDNIKPVIVTGAMRSSSELGYDGSSNLSASVCTAVSKDAMGKGVLVVLNNEVLLASEATKTNTLSLNTFKSLTSGPLGIIDCNELVLTRDIVNRTIIDTDKVESKVALFKAYVGENADFIRFAVDSGYKGIVIEAMGRGNIPPQMLSGVEYAREKGLPVVIVSRCHSGRVFDSYGYFGSGRDLKNLGCIFGGDLPGQKARIKLILALGKTDNLDEIKDFFEKGIYC
>CP012309.1|AXU72583.1|2843563_2845192_+|aspartate-aminotransferase
MKNHTYKEIKNIYGKISPFEFKDKLIDIAKYTAKENNRELLDAGRGNPNWTCSTAREAFFTFGHFAITETRSNWDLGHLAGMPQKKGIKERFFKFINENIDMPGAYLARDIINFGINELGFDGDEFVHELADGIIGDNYPLPDRMLPHMEKIVHDYLVQEMKYDISGKYGDVEIFAVEGATAAMCYIFDSLMANELLKKGDTIALMTPIFTPYLEIPNLPRYDFKVVNINANEVDEKGAHTWQYTKKELEKLRDKSIKALFVVNPNNPASIAMDETSCNNLIDVIENYNKDLMIISDDVYGTFVEDFSSLMSKLPYNTVGVYSYSKYFGVTGWRLGTFALHKKNVFDKKINDLTGELKKSVDKRYSDMSLNPSSLSFMERVVADSRLVALNHTAGLSTPQQVQMAFFSAFALIDKVDAYKKLNMSICHRRQKLLFEALELPINENKNNAAYYTQFDIEEWAKLNYGEDLFKFISKTASPVDVLYKLANDYSVVLLSGNGFYGPEWSIRISLANLYDEAYTKIGKAIREILNGYIVEWQKIKK
>CP012309.1|AXU72582.1|2841687_2842905_-|threonine-dehydratase-catabolic
MMNVTLTDVKEARETIKNIVKRTDLLESVKLSEKTGANVFYKCENLQKTGSFKLRGACNKIASLTDEEKANGVIASSAGNHAQGVALGAKMTGIKSTIVMPATAPLAKVSATKGYGAEVVLNGAVYDDAYAKAVEIQKETGATFLHPFNDKYVIAGQGTISLEIFEQLDNKVDTILCPVGGGGIISGVAVAAKALNPNVKIVGVQTANIPSMKESIKNGKVTTAFNDTTIADGIAVKTPGDLTFEIINELVDEIVVVEETEIAESILFMMESQKIVSEGAGAVCTAAILSGKYVPAKDENVVCIISGGNIDINTLYRIIGVALAKEGRRYSFSTIMEDKPGNFAELTRVISENGGNILSANQGKLSAGEALGKQSAEFILETIDYDHIARIKKAIEEKGFKIIEL
>CP012309.1|AXU72581.1|2841212_2841593_-|translation-inhibitor-endoribonuclease
MKHEVIHTNDAPAALGPYSQAIKAGNLLFVSGQVPLVPETMEVVEGDVQAQTAQSLKNLKAILAESGADFSNVVKTTVFIKDMNEFGAINEVYAEYFGENKPARACVEVARLPKDVKVEIEVIAVL
>CP012309.1|AXU72580.1|2840446_2840929_-|PTS-system-transporter-subunit-IIA
MLNFFKKNKSYKLHAVVSGNSINIEKVNDSVFSKKLMGDGVAIIPNSNVVVAPCNGKVTVLTESKHAFGMVSDEGVEILVHIGIDTVSLQGEGFKNEVSQGDTVKKGSPIISFEREKINSQGIDCTTIIIVLNHSEFSEINCMVENEVVAGQDTVIEIMK
>CP012309.1|AXU72579.1|2839610_2840426_-|transcriptional-antiterminator
MRVVKIFNNNALSTVTNDRKEAILLGLGIGFNKRPGDKVNEDKIEKIYYVQDHMQTKFLELLKNVSPEVMDASQQIISLIPGNEGKFNNKGILSLVEHISFAIDRIKNNVFLPNLMLLDIKMMYSKEFELGVKALEIIYKVCHIHLPEDEAGYIALHFVNLQSNDNLAYDTLKFVKGSIDLIKECYGLELDESSLSTLRFRTHLKFLAQRIFKNEICQDDKMIEMYDYLINNHPKNKEYLEKLNVYIEKEFRYKLDKPEKIYLLLHLTKIL
>CP012309.1|AXU72578.1|2838009_2839560_-|PTS-system-transporter-subunit-IIBC
MKEKLLGGLETFAKAMVQPLMYLSSAGILMVVGVLLTNDMLLGVLPFFKWEPIQIFGSLIYNCIMAIINNLAVIFAIGIPAALAKKEKHKAALIGFMSYIIYLTASNTMLTSLGQLAKESKMLGLIGTGQATILGIQVVDTSVFGGIILGCIAGYVFNRTSNKTFKGALQIYSGANFSFICMFFVSILIGVVSNFIWPLAQQGIASLANVIKDTGTFGLFLYGFLERILVPTGLHHLIYTPFQFSDLGGVLKVGADTVSGAYAIVMTEMNLPVERFSDSIYYMATGFTKMFGYIGIGAAFIYTAYKQNKKKVKATIIPLIITAVLASVTEPLDFMFVFCAPLLFFVHAVIAGLFIALLKIFDVTALCGGNLLVSIIMNTTVGVEKTHWPVMMILGLAQIIVYFVVFSFLIKKFNYKTPGREDESTATGEEQSKQLNLDAGIENIIDGLGGKENINTVENCITRLRVNVKDESKINEDIINLTPNSGIVRKGKDIQIIFGLHVHEVRRAVEDFLEAY
>CP012309.1|AXU72577.1|2836560_2837913_-|6-phospho-alpha-glucosidase
MIITIVGGGSTFTPGIVKSIALREKELELEEIRLFDIDKERQDKVAVVVNWILKEDVKTDVKLTVTNCEKEAYTDATFIFAQMRVGKYEMREQDEKIPLKYGCVGQETCGCGGMAYGLRTIQPMIKVIDDVEKYAKKDYWILNYSNPAAIVSEACRKLRPNARIINICDMPIAIIDMIAGSLNINDVHNIRYDYFGLNHFGWFTSIDYKHRDLMEEIKEYIKENKILLPKSYIENLNKSRSTGNRHAVSSWIHVWESVYTMLESFPKYLPNTYLTYYLLSKETVEHSNINRTRANEVMESREKDLFEGVRHYLETGEISEKAFYAGSHGDWISDLAVSIKNDTRSRFLVITENRGAIPNMPYDAMVEIPAYIGKDGPEVIARGPIPLFQQGLMMQQLNSEKLIVEAYIENSYEKALQAFTLNKTIPSMNVAKEILDEMIEVNKEYWPELR
>CP012309.1|AXU72576.1|2835671_2836451_-|AraC-family-transcription-regulator
MEEWGDAMNIINKIFWEEDRIGMITNNLEADTHSHCMLQLFLGIEDSIEITVNEKLVKCNCIIVDKNISHSFSARKKVYYSAIIEPTSIYAEQLTSKMNDFGYWICDNDGLEKLRQQGTFLIDNSSKEQYLRFMEMLNNYLNIPITLKHYDDRITELLNLLRTCNCDNHTISSFADKVSLSASRLSHLFKEQIGIPLKSYILFHQMECAFRELLSGKNVTEASMTAGFDTPSHFAGTVKRMMGMPVSLSLKDSEFLKVY
>CP012309.1|AXU72586.1|2847788_2847947_-|hypothetical-protein
MDNFLQGILVSLSASLIVYIASKLFRKRKKPLKAATKSGWEFDLKIRFHKTK
>CP012309.1|AXU72587.1|2848305_2849676_-|cell-surface-protein
MKLKKLLSLGLVSMFVAGFPISANALDKIDKIQGADKYETAGIIADKQSYTTAILINADSTMADGLSASGLAGATNAPILLTKKNNIPNATLKRVEKAKKVYIIGGESSIDKATETFLKDKGIETRRLQGNDRIKTSYNVAKEINSINKVNKVILTNAFKGEPDAMSIASVAVRDKAPIILTDGKSVPFNTTGIESYAIGGTSSMSDSLVNDTNSTRLGGVDRYDTNKKIVNKFYNGAKEFYIASGTDLVYALVASPMAKNNPIVLVDIGSNKDILKNAAKVTGIGNLSDKIMLECENTINNISLPSSNKNIICGLKIDFDSNHIIWQDKGSYLECYDDNLEYYTEKYKDPTVPINIENTSTQNLDVTKLKVYGEANSTLYMGQYAKIKMDFNSFGVLKPGEKCTIYLDIISLDPSRSMTLTFSYVGDKENYKYEQGLASRILFYNPDGEDFFEYK
>CP012309.1|AXU72588.1|2851223_2851892_-|vanZF-protein
MEIVTNNQSGVEIQLNLFEAIKDLLLINPIFLLGIILIGIFLVVIFKKNSDIPKVKTSILSLAMYYYLCLTLSHIVGIPTFSEYIRLSQLGETFFNPNINLIPFSDGFSLSFILNILLFVPLGFLCPLISKTFERLRNTFLIGFGLSLFIETIQLFTLHRATDIDDLLTNVIGTIIGYFCFKLIAKLRIVKLHSDDDSMEQDYTVCIPIAIIIVALILGFFS
>CP012309.1|AXU72589.1|2852743_2855164_-|leucyl-tRNA-synthetase
MSVYNFKEVESKWQKIWKDNNQYKMDTAQTEKPNYYTLEMFPYPSGKIHMGHVRNYSIGDVVARFKKMEGYNVLHPMGWDSFGLPAENAAIKHGIHPHKWTMENIEEMKEQLNLLGISYDWDKEVATSTPEYYRFTQEIFLKFLEHGLAYKKKSYVNWCPSCETVLANEQVVQGACERCKATVLKKDLEQWYFKTTEFAEELLNDLDTLDGWPEKVKTMQKNWIGKSTGADLVFDIDGTDKSMTVFTTRPDTTYGVTYMVLAPEHELVKELVAGTEYEADVEAFVQKMHTMTEIERTAADVEKEGMFIGRYVINPLNGKKVPLWIANYVLVEYGTGAIMAVPAHDERDRDFAEKYNLDIIDVITEDNKMINSEEFNGLDASEGFEGIIDKLEKEGRGKRTINYRLRDWLVSRQRYWGCPIPVVYCDECGIVPVKKEDLPVLLPTDVEFTGKGESPLTTSKQFMSTTCPHCGKPARREVDTMDTFVDSSWYFLRYVDSNNENEPFSKELVNRWHPVDQYIGGVEHAIMHLLYARWFVKAFKSMGMVDFNEPFKNLLTQGMVLMDGSKMSKSKGNTVSPMDIIDEYGADTARLFVLFAAPPERDLDWSEQGVDGCFRFLNRVYRLVDELADVVKKDVEFGELNSQDKDMRYTIHSTLKKVTADLSEKFGFNTAISALMELINDMYKYKELDNINEAVIKEGVQTIVTIIAPFAPHLGEELWTMIGKEGSVFDIDWPKYDEKALVKDEIEVVVQVNGKVRGKLTVNSNISKDEMEKVALEDEKIKGLVEGKTIVKVVAVPKKLVNIVVK
>CP012309.1|AXU72590.1|2855517_2855868_-|iojap-family-protein
MTVEQMTKIAYDAIEDKLGQDTVIINIGKVSSLCDYFIITTASSQRQVKAIADNVEDELAKLGLEPRGKEGQGTQTWVLLDYGDIMVHVFNEENRGFYNLEKLWKDAPYIDIDTLA
>CP012309.1|AXU72591.1|2855984_2856557_-|metal-dependent-phosphohydrolase
MNLENINQRLNQMLPVGRLSHSKNVAKCAEKLCEIYGCDKEKAYLAGMIHDCAKYLSDKEIEDYVNKYEIYLDPIEDGNRSLSHSVIGAYICEYEFEVEDEDIINAIKYHTTGREDMSLLEKIIYIADLIEEGRKFPVVDTLRELAYGGKLDEALLTSFNNTLMFVINKKEEIHPRTVMARNYLIKEKLL
>CP012309.1|AXU72592.1|2856557_2857247_-|nicotinate-nucleotide-adenylyltransferase
MRSENLVKMAELKNTEKLEKFNRHKGKIKIGILGGTFDPIHYAHLATAEFIRDKYDIDKIIFIPSGNPPHKLCITTDKYDRYNMTLLATESNEDFLVSKVEIERKKRTYTIDTLKYLKKKYKNADIYFITGADAICSVEEWKDVKKNFELATFIAATRPGISLLRSQETIEKLTKKYNADIITVYVPSLDISSTYIREQLNEGKSIRYLVPENVENYLYENKLYQYGDD
>CP012309.1|AXU72593.1|2857522_2858161_+|recombination-regulator-RecX
MGIITKIEQQKRNDDRVNIYVDDKFFIAIFKELVYTFNLKKGNEINEEELKPILDDEMYIKAKNKALNILSHADQSEKKLKEKLSSEFDENIIERVIDFLKSYNLVNDSVLAQKIVNTNVNLNKCGKNRIKQNLYNKGINRSTINEAVSELDKDTEFENAMYLAKKRYERVKKEDKKKIYQKISQHLSYKGFDYDIIKRVLNKLLNFDEYDI
>CP012309.1|AXU72594.1|2858313_2860317_+|glycogen-branching-protein
MKSQKRFKILDIDVYLQPFESDIKKRMKHYEDMKSKTLKNYKDFSSFANAHLYYGFHQTNDGFFYREWAPNADSLSLIGDFNNWNRKSHPLRKIGSGNWEIFIPGQNSLPHKSEVKVQVTANGKTFDRIPLYIKRVIQKDFGGFNGQIWQPKTPFIWTDNDFDLKNITSPLIYECHIGMSTESESIGTYNEFTEKILPKIKKAGYNTIQLMAIMEHPYYASFGYQVSNFYAISSRFGTPEDLKNLINTAHSMGIAVLLDLVHSHAVKNTLEGINEFDGSEHQFFHSGSKGNHPAWGTKLFNYGKPEVIHFLLSNIKFWLNEYHFDGFRFDGVTSMLYHNHGLGVSFDSYEKYFSMNTDIEAITYLQFANELIKEIKPNSISIAEDMSGMPGMCIPIKDGGIGFDYRLAMGVPDFWIKTISNLSDEDWDLGKMWYELTTRRPGEKNIGYCESHDQALVGDKTIIFWLADKEMYWNMEINSNNHVINRAISLIKLIKLITFSLAGEGYLNFMGNEFGHPEWIDFPREGNNWSYKYARRQWSLSEDNNLKYKQLLNFDKSMLELTKYSDIFIQNSHELIHMDNDKKILVYSKGKYLFIFNFHPNLIQSVDISKFQNTNYKTILNTDMVEFGGNTKKENLRDYDVYFNSTPPSSKMPIASRTAIVLLDNGI
>CP012309.1|AXU72595.1|2860490_2861132_+|TetR-family-transcriptional-regulator
MGRKKEPDNTIQKILDISHKLFLEKGYEQTTIQDIVDNLDGLSRGAIYHHFKSKDEIIKAITSRLYNDGFYGYEVKNDEGKTALEKLQYRLLHAYEQHNKQDIFLMSSSLLRNPKYLATQFDEIINDIVPWIKALIEEGNQDNSMQVKNPEIAAQMFGFLLNTWCIPTVYPGNPQQMIERFTLFGEQAAFMGISFMNDKIMCEYQKFVNKFSK

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Crispr_ID: CP012309_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012309_21

3362887-3365008

Unclear

I-A

Consensus_repeat	Method
ATTTACATACCACTTAGTTAATATAAAAC	CRISPRCasFinder
ATTTACATACCACTTAGTTAATATAAAAC	CRT
GTTTTATATTAACTAAGTGGTATGTAAAT	PILER-CR
ATTTACATACCACTTAGTTAATATAAAAC	CRISPRCasFinder

32 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

The CRISPR arrays of CP012309_21

>merge|CP012309|21|3362887-3365008|CRISPRCasFinder,CRT,PILER-CR,CRISPRCasFinder
ATTTAGATATGATTTAGTTAATATAAGGTGGATGTTTTAGTATATGCTATTGTTGATTCTACAATTTTATATACTGCTTTATTAATATAAAATAAGTTTCTAAATACTCGTTGATATTGCTAATATTCTACTTATCTACCCTTAGTTGATATAAAACCTGACACTGTGCCTTGTGTGAGTCTTTTCTTTATCCTATTTACATACCACTTAGTTAATATAAAACACTTCGAAATTGCAGTTTTCAGCATGTTATTGCGCAATTTACATACCACTTAGTTAATATAAAACCAGGATTAGCAGCAGCGCTCGGACCCGTTTTACTTATATTTACATACCACTTAGTTAATATAAAACATAATTCTGAACAGGTTACAATATGTGTGAATACTCTATTTACATACCACTTAGTTAATATAAAACGTTTAATATGTTAACAGATTTATTTAACAGGGTAAATTTACATACCACTTAGTTAATATAAAACTGATAACTTATTTAAAAATAAATCTAATGTTGCAATTATTTACATACCACTTAGTTAATATAAAACCAGCATTCTCAACAATCTTATCTATTCTGTCTTTTCTATTTACATACCACTTAGTTAATATAAAACAATGTTATCATAAATTAGAATAAATAGAACGAAGTTCATTTACATACCACTTAGTTAATATAAAACAAAGAGTTTGATTTAACATACGAGTATATAGTTGCTAATTTACATACCACTTAGTTAATATAAAACGTGAGTGGTTTGATTTATTTTTATTCTGGTACTCCATTTACATACCACTTAGTTAATATAAAACTCAAGTTAGAAAATATGTTCGAAATTTTGTTAATTTATTTACATACCACTTAGTTAATATAAAACAATCTATTTTTTGAACAGATAAATACAACAATTTATATTTACATACCACTTAGTTAATATAAAACTAGTGACTCGATACTACAAAAATAAAAAAGCGAGGGGATTTACATACCACTTAGTTAATATAAAACATACCCGTTCAAACCAGTTTGCAAATTCATTGCTCCGATTTACATACCACTTAGTTAATATAAAACACTATCGGAATCAGTGATTTTAAGAGTTTTTTCGAATTTACATACCACTTAGTTAATATAAAACCTTTACATATCGTACATAAATCATCCTCAGAATTTTCATTTACATACCACTTAGTTAATATAAAACAAAGATTAGTTAATCTTAAAATTTCTTCTATTTCTAAATTTACATACCACTTAGTTAATATAAAACTTGCTATTTTACAAAAGGTACGGTCGTGATTTATCAATTTACATACCACTTAGTTAATATAAAACCGTTAATGGGATAGATTTTTCTCCTGTTCTAAATCTATTTACATACCACTTAGTTAATATAAAACTAAAGACAACTACTAACGTTGTAGAAAAAATAGTTACATTTACATACCACTTAGTTAATATAAAACACTTTAATAATTAAAATGATATTTTTAAACTAACTTATTTACATACCACTTAGTTAATATAAAACAAGAGAACCAAGCGCAGAAATAGAAGTAGCAGACTTATTTACATACCACTTAGTTAATATAAAACTGAGTATGAGTATAAGCATAGAAAAGTCAATAATTTATTTACATACCACTTAGTTAATATAAAACTGTAATAAGTCAGATAAGCCCCAACGTTATCAACTTATTTACATACCACTTAGTTAATATAAAACTATATTTTATATAATATTTGTTTAATTAAAATTGTAAATTTACATACCACTTAGTTAATATAAAACAAGACGTTATTGCAAATTTTCCAATGAATTTTGACTTATTTACATACCACTTAGTTAATATAAAACAGTATTCACACAGATAAGAAAATTAATCTAATAATAGATTTACATACCACTTAGTTAATATAAAACATATGGAGTTGCCCTAATAATTGTAGAGGTTCAGAAAATTTACATACCACTTAGTTAATATAAAACGTTAGGAGATGAATCTGCTATCCTCAATGGTATTCTCAATTTACATACCACTTAGTTAATATAAAACTAACTTCTATAATATTACCCATCTCTTTTAATCTAAATTTACATACCACTTAGTTAATATAAAAC

>CP012309|21|18|3362887-3362980|CRISPRCasFinder
ATTTAGATATGATTTAGTTAATATAAGGT	GGATGTTTTAGTATATGCTATTGTTGATTCTACAA
TTTTATATACTGCTTTATTAATATAAAATAAGTTTCTAAATACTCGTTGATATTGCTAATATTCTACTTATCTACCCTTAGTTGATATAAAACCTGACACTGTGCCTTGTGTGAGTCTTTTCTTTATCCTATTTACATACCACTTAGTTAATATAAAAC	ACTTCGAAATTGCAGTTTTCAGCATGTTATTGCGCA
ATTTACATACCACTTAGTTAATATAAAAC	CAGGATTAGCAGCAGCGCTCGGACCCGTTTTACTTAT
ATTTACATACCACTTAGTTAATATAAAAC	ATAATTCTGAACAGGTTACAATATGTGTGAATACTCT
ATTTACATACCACTTAGTTAATATAAAAC	GTTTAATATGTTAACAGATTTATTTAACAGGGTAA
ATTTACATACCACTTAGTTAATATAAAAC	TGATAACTTATTTAAAAATAAATCTAATGTTGCAATT
ATTTACATACCACTTAGTTAATATAAAAC	CAGCATTCTCAACAATCTTATCTATTCTGTCTTTTCT
ATTTACATACCACTTAGTTAATATAAAAC	AATGTTATCATAAATTAGAATAAATAGAACGAAGTTC
ATTTACATACCACTTAGTTAATATAAAAC	AAAGAGTTTGATTTAACATACGAGTATATAGTTGCTA
ATTTACATACCACTTAGTTAATATAAAAC	GTGAGTGGTTTGATTTATTTTTATTCTGGTACTCC
ATTTACATACCACTTAGTTAATATAAAAC	TCAAGTTAGAAAATATGTTCGAAATTTTGTTAATTT
ATTTACATACCACTTAGTTAATATAAAAC	AATCTATTTTTTGAACAGATAAATACAACAATTTAT
ATTTACATACCACTTAGTTAATATAAAAC	TAGTGACTCGATACTACAAAAATAAAAAAGCGAGGGG
ATTTACATACCACTTAGTTAATATAAAAC	ATACCCGTTCAAACCAGTTTGCAAATTCATTGCTCCG
ATTTACATACCACTTAGTTAATATAAAAC	ACTATCGGAATCAGTGATTTTAAGAGTTTTTTCGA
ATTTACATACCACTTAGTTAATATAAAAC	CTTTACATATCGTACATAAATCATCCTCAGAATTTTC
ATTTACATACCACTTAGTTAATATAAAAC	AAAGATTAGTTAATCTTAAAATTTCTTCTATTTCTAA
ATTTACATACCACTTAGTTAATATAAAAC	TTGCTATTTTACAAAAGGTACGGTCGTGATTTATCA
ATTTACATACCACTTAGTTAATATAAAAC	CGTTAATGGGATAGATTTTTCTCCTGTTCTAAATCT
ATTTACATACCACTTAGTTAATATAAAAC	TAAAGACAACTACTAACGTTGTAGAAAAAATAGTTAC
ATTTACATACCACTTAGTTAATATAAAAC	ACTTTAATAATTAAAATGATATTTTTAAACTAACTT
ATTTACATACCACTTAGTTAATATAAAAC	AAGAGAACCAAGCGCAGAAATAGAAGTAGCAGACTT
ATTTACATACCACTTAGTTAATATAAAAC	TGAGTATGAGTATAAGCATAGAAAAGTCAATAATTT
ATTTACATACCACTTAGTTAATATAAAAC	TGTAATAAGTCAGATAAGCCCCAACGTTATCAACTT
ATTTACATACCACTTAGTTAATATAAAAC	TATATTTTATATAATATTTGTTTAATTAAAATTGTAA
ATTTACATACCACTTAGTTAATATAAAAC	AAGACGTTATTGCAAATTTTCCAATGAATTTTGACTT
ATTTACATACCACTTAGTTAATATAAAAC	AGTATTCACACAGATAAGAAAATTAATCTAATAATAG
ATTTACATACCACTTAGTTAATATAAAAC	ATATGGAGTTGCCCTAATAATTGTAGAGGTTCAGAAA
ATTTACATACCACTTAGTTAATATAAAAC	GTTAGGAGATGAATCTGCTATCCTCAATGGTATTCTCA
ATTTACATACCACTTAGTTAATATAAAAC	TAACTTCTATAATATTACCCATCTCTTTTAATCTAA


>CP012309|21|9|3362887-3365008|CRT
ATTTAGATATGATTTAGTTAATATAAGGT	GGATGTTTTAGTATATGCTATTGTTGATTCTACAA
TTTTATATACTGCTTTATTAATATAAAAT	AAGTTTCTAAATACTCGTTGATATTGCTAATATTC
TACTTATCTACCCTTAGTTGATATAAAAC	CTGACACTGTGCCTTGTGTGAGTCTTTTCTTTATCCT
ATTTACATACCACTTAGTTAATATAAAAC	ACTTCGAAATTGCAGTTTTCAGCATGTTATTGCGCA
ATTTACATACCACTTAGTTAATATAAAAC	CAGGATTAGCAGCAGCGCTCGGACCCGTTTTACTTAT
ATTTACATACCACTTAGTTAATATAAAAC	ATAATTCTGAACAGGTTACAATATGTGTGAATACTCT
ATTTACATACCACTTAGTTAATATAAAAC	GTTTAATATGTTAACAGATTTATTTAACAGGGTAA
ATTTACATACCACTTAGTTAATATAAAAC	TGATAACTTATTTAAAAATAAATCTAATGTTGCAATT
ATTTACATACCACTTAGTTAATATAAAAC	CAGCATTCTCAACAATCTTATCTATTCTGTCTTTTCT
ATTTACATACCACTTAGTTAATATAAAAC	AATGTTATCATAAATTAGAATAAATAGAACGAAGTTC
ATTTACATACCACTTAGTTAATATAAAAC	AAAGAGTTTGATTTAACATACGAGTATATAGTTGCTA
ATTTACATACCACTTAGTTAATATAAAAC	GTGAGTGGTTTGATTTATTTTTATTCTGGTACTCC
ATTTACATACCACTTAGTTAATATAAAAC	TCAAGTTAGAAAATATGTTCGAAATTTTGTTAATTT
ATTTACATACCACTTAGTTAATATAAAAC	AATCTATTTTTTGAACAGATAAATACAACAATTTAT
ATTTACATACCACTTAGTTAATATAAAAC	TAGTGACTCGATACTACAAAAATAAAAAAGCGAGGGG
ATTTACATACCACTTAGTTAATATAAAAC	ATACCCGTTCAAACCAGTTTGCAAATTCATTGCTCCG
ATTTACATACCACTTAGTTAATATAAAAC	ACTATCGGAATCAGTGATTTTAAGAGTTTTTTCGA
ATTTACATACCACTTAGTTAATATAAAAC	CTTTACATATCGTACATAAATCATCCTCAGAATTTTC
ATTTACATACCACTTAGTTAATATAAAAC	AAAGATTAGTTAATCTTAAAATTTCTTCTATTTCTAA
ATTTACATACCACTTAGTTAATATAAAAC	TTGCTATTTTACAAAAGGTACGGTCGTGATTTATCA
ATTTACATACCACTTAGTTAATATAAAAC	CGTTAATGGGATAGATTTTTCTCCTGTTCTAAATCT
ATTTACATACCACTTAGTTAATATAAAAC	TAAAGACAACTACTAACGTTGTAGAAAAAATAGTTAC
ATTTACATACCACTTAGTTAATATAAAAC	ACTTTAATAATTAAAATGATATTTTTAAACTAACTT
ATTTACATACCACTTAGTTAATATAAAAC	AAGAGAACCAAGCGCAGAAATAGAAGTAGCAGACTT
ATTTACATACCACTTAGTTAATATAAAAC	TGAGTATGAGTATAAGCATAGAAAAGTCAATAATTT
ATTTACATACCACTTAGTTAATATAAAAC	TGTAATAAGTCAGATAAGCCCCAACGTTATCAACTT
ATTTACATACCACTTAGTTAATATAAAAC	TATATTTTATATAATATTTGTTTAATTAAAATTGTAA
ATTTACATACCACTTAGTTAATATAAAAC	AAGACGTTATTGCAAATTTTCCAATGAATTTTGACTT
ATTTACATACCACTTAGTTAATATAAAAC	AGTATTCACACAGATAAGAAAATTAATCTAATAATAG
ATTTACATACCACTTAGTTAATATAAAAC	ATATGGAGTTGCCCTAATAATTGTAGAGGTTCAGAAA
ATTTACATACCACTTAGTTAATATAAAAC	GTTAGGAGATGAATCTGCTATCCTCAATGGTATTCTCA
ATTTACATACCACTTAGTTAATATAAAAC	TAACTTCTATAATATTACCCATCTCTTTTAATCTAA
ATTTACATACCACTTAGTTAATATAAAAC

>CP012309|21|9|3363081-3365008|PILER-CR
ATTTACATACCACTTAGTTAATATAAAAC	ACTTCGAAATTGCAGTTTTCAGCATGTTATTGCGCA
ATTTACATACCACTTAGTTAATATAAAAC	CAGGATTAGCAGCAGCGCTCGGACCCGTTTTACTTAT
ATTTACATACCACTTAGTTAATATAAAAC	ATAATTCTGAACAGGTTACAATATGTGTGAATACTCT
ATTTACATACCACTTAGTTAATATAAAAC	GTTTAATATGTTAACAGATTTATTTAACAGGGTAA
ATTTACATACCACTTAGTTAATATAAAAC	TGATAACTTATTTAAAAATAAATCTAATGTTGCAATT
ATTTACATACCACTTAGTTAATATAAAAC	CAGCATTCTCAACAATCTTATCTATTCTGTCTTTTCT
ATTTACATACCACTTAGTTAATATAAAAC	AATGTTATCATAAATTAGAATAAATAGAACGAAGTTC
ATTTACATACCACTTAGTTAATATAAAAC	AAAGAGTTTGATTTAACATACGAGTATATAGTTGCTA
ATTTACATACCACTTAGTTAATATAAAAC	GTGAGTGGTTTGATTTATTTTTATTCTGGTACTCC
ATTTACATACCACTTAGTTAATATAAAAC	TCAAGTTAGAAAATATGTTCGAAATTTTGTTAATTT
ATTTACATACCACTTAGTTAATATAAAAC	AATCTATTTTTTGAACAGATAAATACAACAATTTAT
ATTTACATACCACTTAGTTAATATAAAAC	TAGTGACTCGATACTACAAAAATAAAAAAGCGAGGGG
ATTTACATACCACTTAGTTAATATAAAAC	ATACCCGTTCAAACCAGTTTGCAAATTCATTGCTCCG
ATTTACATACCACTTAGTTAATATAAAAC	ACTATCGGAATCAGTGATTTTAAGAGTTTTTTCGA
ATTTACATACCACTTAGTTAATATAAAAC	CTTTACATATCGTACATAAATCATCCTCAGAATTTTC
ATTTACATACCACTTAGTTAATATAAAAC	AAAGATTAGTTAATCTTAAAATTTCTTCTATTTCTAA
ATTTACATACCACTTAGTTAATATAAAAC	TTGCTATTTTACAAAAGGTACGGTCGTGATTTATCA
ATTTACATACCACTTAGTTAATATAAAAC	CGTTAATGGGATAGATTTTTCTCCTGTTCTAAATCT
ATTTACATACCACTTAGTTAATATAAAAC	TAAAGACAACTACTAACGTTGTAGAAAAAATAGTTAC
ATTTACATACCACTTAGTTAATATAAAAC	ACTTTAATAATTAAAATGATATTTTTAAACTAACTT
ATTTACATACCACTTAGTTAATATAAAAC	AAGAGAACCAAGCGCAGAAATAGAAGTAGCAGACTT
ATTTACATACCACTTAGTTAATATAAAAC	TGAGTATGAGTATAAGCATAGAAAAGTCAATAATTT
ATTTACATACCACTTAGTTAATATAAAAC	TGTAATAAGTCAGATAAGCCCCAACGTTATCAACTT
ATTTACATACCACTTAGTTAATATAAAAC	TATATTTTATATAATATTTGTTTAATTAAAATTGTAA
ATTTACATACCACTTAGTTAATATAAAAC	AAGACGTTATTGCAAATTTTCCAATGAATTTTGACTT
ATTTACATACCACTTAGTTAATATAAAAC	AGTATTCACACAGATAAGAAAATTAATCTAATAATAG
ATTTACATACCACTTAGTTAATATAAAAC	ATATGGAGTTGCCCTAATAATTGTAGAGGTTCAGAAA
ATTTACATACCACTTAGTTAATATAAAAC	GTTAGGAGATGAATCTGCTATCCTCAATGGTATTCTCA
ATTTACATACCACTTAGTTAATATAAAAC	TAACTTCTATAATATTACCCATCTCTTTTAATCTAA
ATTTACATACCACTTAGTTAATATAAAAC

>CP012309|21|19|3363081-3365008|CRISPRCasFinder
	GGATGTTTTAGTATATGCTATTGTTGATTCTACAA
TTTTATATACTGCTTTATTAATATAAAATAAGTTTCTAAATACTCGTTGATATTGCTAATATTCTACTTATCTACCCTTAGTTGATATAAAACCTGACACTGTGCCTTGTGTGAGTCTTTTCTTTATCCTATTTACATACCACTTAGTTAATATAAAAC	ACTTCGAAATTGCAGTTTTCAGCATGTTATTGCGCA
ATTTACATACCACTTAGTTAATATAAAAC	CAGGATTAGCAGCAGCGCTCGGACCCGTTTTACTTAT
ATTTACATACCACTTAGTTAATATAAAAC	ATAATTCTGAACAGGTTACAATATGTGTGAATACTCT
ATTTACATACCACTTAGTTAATATAAAAC	GTTTAATATGTTAACAGATTTATTTAACAGGGTAA
ATTTACATACCACTTAGTTAATATAAAAC	TGATAACTTATTTAAAAATAAATCTAATGTTGCAATT
ATTTACATACCACTTAGTTAATATAAAAC	CAGCATTCTCAACAATCTTATCTATTCTGTCTTTTCT
ATTTACATACCACTTAGTTAATATAAAAC	AATGTTATCATAAATTAGAATAAATAGAACGAAGTTC
ATTTACATACCACTTAGTTAATATAAAAC	AAAGAGTTTGATTTAACATACGAGTATATAGTTGCTA
ATTTACATACCACTTAGTTAATATAAAAC	GTGAGTGGTTTGATTTATTTTTATTCTGGTACTCC
ATTTACATACCACTTAGTTAATATAAAAC	TCAAGTTAGAAAATATGTTCGAAATTTTGTTAATTT
ATTTACATACCACTTAGTTAATATAAAAC	AATCTATTTTTTGAACAGATAAATACAACAATTTAT
ATTTACATACCACTTAGTTAATATAAAAC	TAGTGACTCGATACTACAAAAATAAAAAAGCGAGGGG
ATTTACATACCACTTAGTTAATATAAAAC	ATACCCGTTCAAACCAGTTTGCAAATTCATTGCTCCG
ATTTACATACCACTTAGTTAATATAAAAC	ACTATCGGAATCAGTGATTTTAAGAGTTTTTTCGA
ATTTACATACCACTTAGTTAATATAAAAC	CTTTACATATCGTACATAAATCATCCTCAGAATTTTC
ATTTACATACCACTTAGTTAATATAAAAC	AAAGATTAGTTAATCTTAAAATTTCTTCTATTTCTAA
ATTTACATACCACTTAGTTAATATAAAAC	TTGCTATTTTACAAAAGGTACGGTCGTGATTTATCA
ATTTACATACCACTTAGTTAATATAAAAC	CGTTAATGGGATAGATTTTTCTCCTGTTCTAAATCT
ATTTACATACCACTTAGTTAATATAAAAC	TAAAGACAACTACTAACGTTGTAGAAAAAATAGTTAC
ATTTACATACCACTTAGTTAATATAAAAC	ACTTTAATAATTAAAATGATATTTTTAAACTAACTT
ATTTACATACCACTTAGTTAATATAAAAC	AAGAGAACCAAGCGCAGAAATAGAAGTAGCAGACTT
ATTTACATACCACTTAGTTAATATAAAAC	TGAGTATGAGTATAAGCATAGAAAAGTCAATAATTT
ATTTACATACCACTTAGTTAATATAAAAC	TGTAATAAGTCAGATAAGCCCCAACGTTATCAACTT
ATTTACATACCACTTAGTTAATATAAAAC	TATATTTTATATAATATTTGTTTAATTAAAATTGTAA
ATTTACATACCACTTAGTTAATATAAAAC	AAGACGTTATTGCAAATTTTCCAATGAATTTTGACTT
ATTTACATACCACTTAGTTAATATAAAAC	AGTATTCACACAGATAAGAAAATTAATCTAATAATAG
ATTTACATACCACTTAGTTAATATAAAAC	ATATGGAGTTGCCCTAATAATTGTAGAGGTTCAGAAA
ATTTACATACCACTTAGTTAATATAAAAC	GTTAGGAGATGAATCTGCTATCCTCAATGGTATTCTCA
ATTTACATACCACTTAGTTAATATAAAAC	TAACTTCTATAATATTACCCATCTCTTTTAATCTAA
ATTTACATACCACTTAGTTAATATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP012309.1\|AXU73002.1\|3373658_3374546_-\|putative-transcriptional-regulator	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
CP012309.1\|AXU72993.1\|3362397_3362826_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|236715
CP012309.1\|AXU72990.1\|3359126_3360263_-\|thiolase	unknown	unknown	gnl\|CDD\|238383
CP012309.1\|AXU72994.1\|3365191_3365458_-\|CRISPR-associated-Cas2-family-protein	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP012309.1\|AXU73003.1\|3374854_3376771_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
CP012309.1\|AXU73001.1\|3372843_3373581_-\|CRISPR-associated-Cas-family-protein	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
CP012309.1\|AXU72998.1\|3369341_3370043_-\|CRISPR-associated-protein,-Cas5t-family	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
CP012309.1\|AXU73000.1\|3370960_3372838_-\|CRISPR-associated-protein-Cas8a1/Cst1,-subtype-I-B/TNEAP	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
CP012309.1\|AXU72984.1\|3350127_3352347_-\|signaling-protein	unknown	unknown	gnl\|CDD\|238923
CP012309.1\|AXU72985.1\|3352622_3355277_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
CP012309.1\|AXU72999.1\|3370044_3370959_-\|CRISPR-associated-autoregulator,-Cst2-family	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
CP012309.1\|AXU72989.1\|3357731_3359123_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341288
CP012309.1\|AXU72995.1\|3365460_3366441_-\|maturase-related-protein	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
CP012309.1\|AXU72997.1\|3367009_3369331_-\|CRISPR-associated-helicase,-Cas3-family	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
CP012309.1\|AXU72986.1\|3355780_3355981_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72987.1\|3356187_3356778_-\|dipicolinate-synthase-subunit-B	unknown	unknown	gnl\|CDD\|181370
CP012309.1\|AXU72988.1\|3356780_3357656_-\|dipicolinate-synthase-subunit-A	unknown	unknown	gnl\|CDD\|181371
CP012309.1\|AXU72996.1\|3366443_3367013_-\|CRISPR-associated-Cas4-family-protein	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP012309.1\|AXU72992.1\|3361163_3361943_+\|hypothetical-protein	unknown	unknown	unknown
CP012309.1\|AXU72991.1\|3360294_3360840_-\|biotin-synthase	unknown	unknown	gnl\|CDD\|376871

Protein	Function_ID	Function_description	E-value
CP012309.1\|AXU73002.1\|3373658_3374546_-\|putative-transcriptional-regulator	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.87001e-40
CP012309.1\|AXU72993.1\|3362397_3362826_-\|acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	8.2844e-47
CP012309.1\|AXU72990.1\|3359126_3360263_-\|thiolase	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	1.2644e-108
CP012309.1\|AXU72994.1\|3365191_3365458_-\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.64696e-28
CP012309.1\|AXU73003.1\|3374854_3376771_-\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	4.03052e-09
CP012309.1\|AXU73001.1\|3372843_3373581_-\|CRISPR-associated-Cas-family-protein	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	1.1021e-19
CP012309.1\|AXU72998.1\|3369341_3370043_-\|CRISPR-associated-protein,-Cas5t-family	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.28951e-66
CP012309.1\|AXU73000.1\|3370960_3372838_-\|CRISPR-associated-protein-Cas8a1/Cst1,-subtype-I-B/TNEAP	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	1.24462e-23
CP012309.1\|AXU72984.1\|3350127_3352347_-\|signaling-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.87712e-107
CP012309.1\|AXU72985.1\|3352622_3355277_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
CP012309.1\|AXU72999.1\|3370044_3370959_-\|CRISPR-associated-autoregulator,-Cst2-family	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	3.12381e-53
CP012309.1\|AXU72989.1\|3357731_3359123_-\|AMP-binding-protein	gnl\|CDD\|341288	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA. This family of acyl-CoA ligases includes Bacillus subtilis YhfT, as well as long-chain fatty acid-CoA ligase VraA, all of which are as yet to be characterized. These proteins belong to the adenylate-forming enzymes which catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain	9.14903e-145
CP012309.1\|AXU72995.1\|3365460_3366441_-\|maturase-related-protein	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	9.94583e-175
CP012309.1\|AXU72997.1\|3367009_3369331_-\|CRISPR-associated-helicase,-Cas3-family	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	5.45412e-56
CP012309.1\|AXU72987.1\|3356187_3356778_-\|dipicolinate-synthase-subunit-B	gnl\|CDD\|181370	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed.	6.40655e-126
CP012309.1\|AXU72988.1\|3356780_3357656_-\|dipicolinate-synthase-subunit-A	gnl\|CDD\|181371	PRK08306, PRK08306, dipicolinate synthase subunit DpsA.	7.8671e-132
CP012309.1\|AXU72996.1\|3366443_3367013_-\|CRISPR-associated-Cas4-family-protein	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.62972e-60
CP012309.1\|AXU72991.1\|3360294_3360840_-\|biotin-synthase	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	2.43536e-36

>CP012309.1|AXU72993.1|3362397_3362826_-|acetyltransferase
MIKKLNNKDINKIMEIWEKSTIKAHDFISKEYWQNNYNTVKNEYIPISDTFVYDDGDEIKGFISIIDKSFIGALFIKPKYQNLGIGGKLLDYATKKYKSLSLAVYKDNKKAVVFYNKKGFNIVKEQVNEDSGFKEYIMEYSK
>CP012309.1|AXU72992.1|3361163_3361943_+|hypothetical-protein
MKVNENNINNIDEELDELSRKVYLESPDFWISISDKIIDKVFDEMLLFFAVKYNYFNIVCFAIENNYLDLNMPSKNKKYTNIMEHLLDTSKQNEDKKIYNYLLSLNKGNNLDERPILDELNCNISSDTFEKKDIYLPKYLCPSCNSNIFDTGYKVSNDITYKFSSKEAEPIEMCSEVSSIRCCNCDELLEDITLDKLYNLCKIQNCNNCGSNLTKVGIIAKKKMNFDENTEKFKDVSTSYCCGNCDSEISLSQREHFKI
>CP012309.1|AXU72991.1|3360294_3360840_-|biotin-synthase
MKNTKVNIQDLTKMSICVALLCISSYIYIPLPFTPAGVTAQTIMINLIALILTPRQAFSTVGVYIMIGLIGIPVFGGGTSGIGKLLSPTGGFYFGFLFAALIISLLKGRNNDIKRYILITIFVGMPIIYFMGTVFMCYFNQMTVEAALFAAVVPFLIGDTIKSVIASFLGTKLNNVLRRNL
>CP012309.1|AXU72990.1|3359126_3360263_-|thiolase
MKEVFILGGLRSHIGLKNGIFQFVQPELLGASVLKDLIKKYEIDKIDEIICGNAVGTGGNIARLMTLTAGVSNEVPAFTVDMQCASAMMSIDIAFSKVKSGQCDLIIAGGFESSSLQPMRTYHKNDKRYNTNNPNYTVAQFSPDDNSQNSMLEGAERVAELYQIEKADLDFWVKESHKRAKEAREEKILEDIISPINNSTYDEGIRDKMSQRLLDRMPSILGKETITNAANSCLINDGASFIIICSKKYLEHVKKKPKAKIINTCTIGTDATLSPTSAIQAMDKLLEIESLNYLDVSAVEFNEAFAVIDVLFQRKYPELIDRYNIFGGALAYGHPYGASGAIIALHLLKALEKTKGRYGICSIAAAGGLGSALLLERV
>CP012309.1|AXU72989.1|3357731_3359123_-|AMP-binding-protein
MNYYELLRIKKERHKNKNFLIIDGEKYTYENILSYSEELGKQISLGENIPILIYSKNIMFQLISFFAINYSKNIPIICHYNLSKKVLDDILLKNNISIIISDESMDVIDLYDDNNNEVAKKVNFSIFNPKFNIYMYQYKKLINYLDKSICMGALSSGSTSVPKVLYRTYESWAGFFPIQNGIFNISGESILFVNGTLSFTGNLNSIMSVLYEGGSIVISSGLNCKSWIRKIKQYNVTNIYLIPTKLQLLVKHLKEPVLKVVSIFTGSQLLFEDTARNLKKYMPKSEIILYYGASELNYITYLCYDELIEKPLSVGRPFPGIDIYIREGKIFVNTEYAVYNATKPYSVNDIGYYDNDGYLIFEGRSDDIINIGGFKVSSTKIENEVKKIPQIEDAIVLPYSDTIRGNKIVLFVITIDKITKKDLLIKMKDNLMKNEIPKKIIFLNSFPYTSSEKIDRLALLKML
>CP012309.1|AXU72988.1|3356780_3357656_-|dipicolinate-synthase-subunit-A
MSNQYDITVIGGDLRQVYMVKKLINKGYSVVTYGISNEIINGIVGKSTSLAEALSKSSIILCPIPFTKNQVNIENTDDCLDATIDNLLINLSPNQILFGGNIPTKVCKFCEQHSIQIYDFMKMNDVAILNAVATAEGAIAEAIKRSIINIHQSNCLVLGYGRCAQILAKKLYALDANVCVGARNNDARSTANAFGYSSISLSQLDEKLLQFDYIFNTIPECILTKERLEKVSQEVTIIDIASSPGGVDYSVVKEAGINATLCLGLPGKYSPKTSGEILVNAIENIINERRD
>CP012309.1|AXU72987.1|3356187_3356778_-|dipicolinate-synthase-subunit-B
MRLEGLTIGVGFTGSFCTYDKIFIELENLVKEGANVHTIFSDVSQNIDCRFGNSEEFMKKAYELTGNKPIVTIEEAEPFGPKGIADIIIIAPCTGNTAAKLANGITDSPVLMAAKGHLRNDKPLVISISTNDALSFNFKNIGILLNSKNIYFVPFGQDNCKAKPNSMIAHTELIIPTIELALENKQLQPVIKSPHQ
>CP012309.1|AXU72986.1|3355780_3355981_+|hypothetical-protein
MKKLKTISIFSLIISVILTIGGIGIVTYYVDNLFIRGLSVFVLIMSSSFVSTTVRLIFEESKRYKF
>CP012309.1|AXU72985.1|3352622_3355277_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAHKEQVIIENKKENEVMSVGLDTVNNVESLVKKLAKIREAQKIFATYSQEQVDKIFLAASLAANKQRVPLAIMAQKETGMGIAEDKVIKNHYASEYIYNAYKETKTCGVIEKDEAFGMTKIAEPIGVIAAVVPTTNPTSTAIFKALLALKTRNGIIFSPHPRAKNSTIEAAKVVLEAAVLAGAPEGIIGWIDEPSLELTTTVMKEVDLTLATGGPGMVKSAYSSGKPAIGVGAGNTPAIIDDSADIKTAVNSILVSKTFDNGMICASEQSVIVLESIYNEVKKEFKERGAYLLDKDKTEKIRNIILVNGGLNSKIVGQTACTIAKLAGFEVPVDTKVLIGEVESVEIEEAFAHEKLSPVLAMYKASDFDDAVRKAEKLVEDGGFGHTSSLYIDDVNQREKLDKFTSAMKTCRILINTPSSQGGIGDLYNFKLAPSLTLGCGSWGGNSVSENVGVKHLLNIKTVAERRENMLWFRAPEKVYFKKGCLGVALKELKDVMNKKRAFIVTDTFLYNNGYTKAVTDLLDEMNIKHTTFFEVEPDPTLECAKIGAKAMREFNPDVIISIGGGSAMDAGKIMWTLYEHPDVDFQDLAMRFMDIRKRVYTFPKMGEKANFVAIPTSAGTGSEVTPFAVITDQDTGVKYPLADYELMPDMAIVDSDMMMNMPKSLTSASGIDALTHALEAYVSMLATDYTNGLALQAIKSIFEYLPRAYDNGAKDPEAREKMANASTMAGMAFANAFLGVCHSMAHKLGAFHHVPHGVANALLITEVMKFNSSDAPKKMGAFSQYKYPEALKRYAEIASFLGLKGNSDEEKFQSLLVAIEDLKLKVGIPKSIKEFGVEESKFMDSIDEMVIQAFDDQCTGANPRYPLMNEIKDMYLNSYYGR
>CP012309.1|AXU72984.1|3350127_3352347_-|signaling-protein
MTGRNKSFTLITILFLTSLFLTMGYIYIEDTKHLLMSEAKIHIKEVAVQGSQLAQRQIEKDLDVLNIFSNYYASNPDIPNEEKMKNLLDEMENQKFYTMAIVDINGNAENTKGDKFSVKDREFFKNSIKGKKYVSSPYVDEVNKSIKKIAISVPLLNNDKVVGVLYCTYNINTLMKLINISFYENNSISYVVKNDGTIILHPQGDSLSKNIYKLLEQDNDIQEVNRLKKELQENKTGATVLNMLEERRYLGYATMDNGNSENNYIKDWNLIFSIPETVVFSNSKQIINRAVYAVLSIVLIFIAIIFYIIYIKKSNEKEILSLAYEDKVTYIGNQNKFYRECSKYLLDKPSLNYIIVYFDINNFKMINDTFGYEFGDNLLITIAKALKEELTEGEVYARLSSDYFAIFCDYKNGRNKIIRKLDNIRSNIESNLSIVFEISLCVGIYFVEEGEVDIQKAVNKANMARSVAKGKNINYAIYNEDVRNKLSEESMILDDIKIALVKNQFEVYYQPKFSLVTGEMIGSEALIRWNHPEHGFISPAVFIPIAEKSKLILKIGRFVFERVCNDLSEWKKQGKKIVPVSVNLSRVELYQPDIVKFINKTIQMYNLSSDFIEIEITETVAINELNILKNVLNELRKHGFSISMDDFGTGYSSISCLRDMPIDILKLDKSFLGGIEHDERSRNIAKSIVSLAKSLDLVVIIEGVESKEQAELMKQFGCDLVQGFYFARPMPAKNFLDLL
>CP012309.1|AXU72994.1|3365191_3365458_-|CRISPR-associated-Cas2-family-protein
MFVIVTYDIVEARSLNRIRRILRKYLTWTQNSVFEGNITEGKLHKCISEIENIIDNSEDSIYVYEIKNPNSIKKKCYGIDKYSDEMFI
>CP012309.1|AXU72995.1|3365460_3366441_-|maturase-related-protein
MYKDYYIISNGDIKRKENTIYYYNLEGEKKILPVEQVDDIHIYGEVDLNTKLINYISKYGVMLHFYNYYGYYSGTYYPRKKNVSGFSLVCQSACYLDKNERLYLAKSFVESASYHILRNMRYYKVDESLIDTIKDELNDLNDVKEISELMGKEGRIRKTYYKSFNQILKDDFEFYKREKRPPKDPVNALMSFGNSIMYTNVLSEIYKTQLDPTISFLHEPSTKRFSLSLDIAEIFKPIIVDTIIFSLINNKRINKNDFEYQDKICYLSEKGKKKFLQEFENKMQTTIKHRNLNRKVSYRMFIRLECYKLIKHFINDERYKVLKVWW
>CP012309.1|AXU72996.1|3366443_3367013_-|CRISPR-associated-Cas4-family-protein
MIFILTMWLKFTKEGDFVPIDLEVLKVQGVKINYYYVCKRKLWLFSKGITMEQNSSRVLSGKIVHEDSYKRMKNKEILIDDILKLDIIKDEYVKEVKISSKMKEADEMQLYYYLYYLKNSMGIEKKGTINYVKEKKQEELILTEEKERIIENTLININEINMQLSPSKIEKKHYCTKCAYYEFCFVKEE
>CP012309.1|AXU72997.1|3367009_3369331_-|CRISPR-associated-helicase,-Cas3-family
MLYAKSNPVETLREHTDELLKQMNVLRESYGKNINSLDFLEEEIFWQLLDFVIEFHDIGKAFSPFQELIKSRMDTKINEPKIVTHLENNVGHNYLSPAFIDYSYIDRKKNKELRAVLNQVIVYHHERDIFIDKDFKNLIQKILDEDLINKVYELQHEFKVRYPIKTERLSKVYLQSVEKRIDKNHKYYNLYIMLKGILHRLDHSASAHEVVECNNVINIGEQTENYLMKEFGSLREAQSFAKSNRNKNIILIASTGMGKTETALIWIDKDKAFFTLPLRVSINALFDRAKNIVGVGESNDTFLGLLHSTAIDYLEESNQENSSEIVDLAKLLSCKLTFSTIDQIFKFPFLYRGYEKVYSTLAYSKVVIDEIQAYSPEIAAVLVKGIEMIHKIGGRFMIMTATMPTIYIDELKKRGVMNSNLAELTCNTEKIRHCVSIVENSIDENLGKIIQSGMNKKVLVIVNTVKSAVEKYELIEEIVKPKGIDVNLNLLHSMYIQEDRAKLEKYIKEFADSDRNGIWITTQLVEASLDIDFDELHTENSTLDSLFQRFGRCYRSREYEENSPNIFIYTEKATGIGSIYDKDIVEKGLELLKTFINGKECVKMKEKYKVEMVKILYSKESLEGTAFEKRFTSALNILDTITPYSLGSKDAQNILRNIEGYTVIPEDIYNKIEETLIKDYEELGQELINAYSNDDRQLINKIKSKRKKARREIIKKTVNLPIYKAKQNVIDIQVKGLEDLKILLYKYDIYENKHTKQIFGKGVLISNEIDQFI
>CP012309.1|AXU72998.1|3369341_3370043_-|CRISPR-associated-protein,-Cas5t-family
MKVLKLDLFQETACYKKPFAMKITETYPLPPYSTINGLIHKILNATEYIPFNISVQGTYESIFNNYQTTYFYKKDSITSMPMNSHMLLNVNLIIHIGGDFDLLEEIYDSLLNYDEHLSLGRKEDLVRINDIRFVEVNKFEVDEDIQLDDYENYKLSECNIRMPIYIPKTSLQDTDIDGISYRLNNYYDNNAVEDKKRVWNKVDSYYVEDGNTISIGDILLDNEGDLLYFNNIN
>CP012309.1|AXU72999.1|3370044_3370959_-|CRISPR-associated-autoregulator,-Cst2-family
MKRGLTFTVIAQAQSLNYGEGIGNISELKKLSRDDGNIYTFASRQCLRYDIVRLAAELFNWNLQVVDKEKGTIQFKDNISIRESEEMDLFGYMKTNKKDEKDKKGGSLTREATVRLSNAISLEPYRSDMDFLNNKGFADRIGEHPNLANIEQHLSYYTYTVTIDLSKIGKDGEIELDNKEKCRRVVEFLEIIKVLNRNIRGRQENLSPLFVVGGVYEIANPFFLGRIKLKGDKNGFKINKQAIEEVIQGTFLGKDLKEFTYVGMVDGVFINKEEFKGLFEDNFFSVDKFFGQLVKEVKEYYGVN
>CP012309.1|AXU73000.1|3370960_3372838_-|CRISPR-associated-protein-Cas8a1/Cst1,-subtype-I-B/TNEAP
MKLRVYRGDWFFNMGIVGFLNIIKKADKQAEIFIMEDYIEFDSLFLENFHEYYFNYFMDEYDVSKRIKKNIDYSINFIKSKPDRIKDGIKKIKDSVKQQNDKIKKFDEEKFNLIKEKLDSMSKIKSYDEFDSLEALVDETIDIFKIKSINDRLTANLYKYVVQDNYFGQVSFFNVAKAKLDLDGLKQVMFNDYLRQIIYFGELEDLLEENDYDKLKNYLNDRLNSIAKDINEKKVSKSSINTIEKIMKEINKNFIKKNKSIEDIKKYMDSLEVCEMCGLYKGILDEYSESNFAPLGVSTNNARNMFWNQAYVPSICDICKLILFCTPAGATYTRKNYLINEENEFYLFVNMDTCINELFERNNSLKAQKSEYSDSKDENPFNQLIKSIVEENTLKSEWQLRNILFVEFKASIDSKKCKINYFNIPTYLAKFFTDKYANKKIQSIYDYKLKSNVLDLLLKNRDLKHLINNILRNKVKNDMESNNKSNISGIDCFRVVQLRALINSYKKGVYKMDSKNLEKNDEKLRIIYYLGCDIHDYFVNKNSKNKIDGVSYKLLNSVKVGNKSDFMDTIIRVFMSAEKQIPAFILDIEIEKDLDFESIGHAFISGLISGKYEGKDKLPNEKEEK
>CP012309.1|AXU73001.1|3372843_3373581_-|CRISPR-associated-Cas-family-protein
MKMKIEFSTGCIPISYNSLFMSIIKEAIRKSNEDYYKSMYYYKEKNNKKTKNFTFSVYIKKYSIEGDNFIIEDKVILNISTPDLELGFHIYNGLMTSKKCLYKDYELTRIRIDLSREKKVTEERVLFNALSPICVKSKEGKFLEITDDRYIEELNYITNEVVKNYRGNGLKRKLEFENIGLKKVVVKESLREFKKITGKEYQYINGYKGKFILKGDIDDLNLIYNLGIGFRRAQGFGDVDILEWR
>CP012309.1|AXU73002.1|3373658_3374546_-|putative-transcriptional-regulator
MKCKELSEELEVSERQIKSYKMYLEQAGIFINSTPGIYGGYEIDKCNSISLIKLLDSEVSILDMINSQLEYNNDIYKNEFNNIVEKIKAVLNTGEKSDTYMDYFTVQAQRNCDYESEKNKCNEIIRAYTTKHKFWIEYYSLNSGNSERIVHPYGLFNYKSDTYMVAFCEKRFKFIDFKLCRIKDYKVLEEKYNVDKSFSWDEYSKNSIGIYKGEEINVVIKISHPFSTIIKEKVWVNNQQIIEYDDKSIMFKAKMRGYEEIKSWILSMGAYVEVVEPDRLRNDILSEIEKMKKIY
>CP012309.1|AXU73003.1|3374854_3376771_-|ABC-transporter-permease
MNIKQFAINNISRNIKAYLGYLASIVISSSLLFSFIMFTSHPDLDVSQFPDYLKEGLKMSKIIAYLFLFFFVFYSVSVFLKSRYKEFGILYITGISKRQVMKLIFIENMIINIVSSVIGIIIGLIFAKIFLVVMSTFLELSPLKFYIPFNAILSTLIYFMILAVLTSIFTSFIVKENQVLKLLKGTKTPKSEPKTSLMLAILSICLFIIAYYNAITSTDQYTTYLRLVPVTSLTIVATYLFFSQFSVFFMKKLKLNKRFYRKNTNMLWISNLIYKVKDNARIFFLITITSAVAFTAIGTVYSFWKDVERQINLIYPNTIYYSTMTLHNDPKKPDSKEKDKERMMFIENNLKKENVDYTRTNGEFKTVFPKKSDFNVRIMKESKYLEITETIGVKPISFEDNECISLLSSSLPGNKNVKENIIVGNRGLKVAKQVEECVMPAYYKNMYVVKDNFYDSIESKFIVDRFTAFEVEDSSKTIEICREFENKFNNESGMQPYLFFSKELMIGTGKLMYSTFIFLAIFIGLIFFVTTSSFLYNKFYMDCQVDKKKYEQLNKLGMTYNEIKKASTIEIGIVFLFPYVVAVIHSIFALTALKNSFDIEVASSAVLVMGSLFLVQIVYFLIVRNNYLKEIRLNLVNF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP012309_1	1.1\|17891\|34\|CP012309\|CRISPRCasFinder	17891-17924	34	CP012309.1	12436-12469	0	1.0
CP012309_1	1.1\|17891\|34\|CP012309\|CRISPRCasFinder	17891-17924	34	CP012309.1	32125-32158	0	1.0
CP012309_1	1.1\|17891\|34\|CP012309\|CRISPRCasFinder	17891-17924	34	CP012309.1	131190-131223	0	1.0
CP012309_1	1.1\|17891\|34\|CP012309\|CRISPRCasFinder	17891-17924	34	CP012309.1	148750-148783	0	1.0
CP012309_1	1.1\|17891\|34\|CP012309\|CRISPRCasFinder	17891-17924	34	CP012309.1	1112512-1112545	0	1.0
CP012309_1	1.1\|17891\|34\|CP012309\|CRISPRCasFinder	17891-17924	34	CP012309.1	3934454-3934487	0	1.0
CP012309_1	1.1\|17891\|34\|CP012309\|CRISPRCasFinder	17891-17924	34	CP012309.1	4074816-4074849	0	1.0
CP012309_2	2.1\|138138\|37\|CP012309\|CRISPRCasFinder	138138-138174	37	CP012309.1	12438-12474	0	1.0
CP012309_2	2.1\|138138\|37\|CP012309\|CRISPRCasFinder	138138-138174	37	CP012309.1	32127-32163	0	1.0
CP012309_2	2.1\|138138\|37\|CP012309\|CRISPRCasFinder	138138-138174	37	CP012309.1	131192-131228	0	1.0
CP012309_2	2.1\|138138\|37\|CP012309\|CRISPRCasFinder	138138-138174	37	CP012309.1	148752-148788	0	1.0
CP012309_2	2.1\|138138\|37\|CP012309\|CRISPRCasFinder	138138-138174	37	CP012309.1	1112514-1112550	0	1.0
CP012309_2	2.1\|138138\|37\|CP012309\|CRISPRCasFinder	138138-138174	37	CP012309.1	3934449-3934485	0	1.0
CP012309_2	2.1\|138138\|37\|CP012309\|CRISPRCasFinder	138138-138174	37	CP012309.1	4074811-4074847	0	1.0
CP012309_4	4.1\|154262\|39\|CP012309\|CRISPRCasFinder	154262-154300	39	CP012309.1	12431-12469	0	1.0
CP012309_4	4.1\|154262\|39\|CP012309\|CRISPRCasFinder	154262-154300	39	CP012309.1	131185-131223	0	1.0
CP012309_4	4.1\|154262\|39\|CP012309\|CRISPRCasFinder	154262-154300	39	CP012309.1	148745-148783	0	1.0
CP012309_4	4.1\|154262\|39\|CP012309\|CRISPRCasFinder	154262-154300	39	CP012309.1	3934454-3934492	0	1.0
CP012309_4	4.1\|154262\|39\|CP012309\|CRISPRCasFinder	154262-154300	39	CP012309.1	4074816-4074854	0	1.0
CP012309_6	6.1\|1112574\|35\|CP012309\|CRISPRCasFinder	1112574-1112608	35	CP012309.1	131252-131286	0	1.0
CP012309_6	6.1\|1112574\|35\|CP012309\|CRISPRCasFinder	1112574-1112608	35	CP012309.1	3091875-3091909	0	1.0
CP012309_6	6.1\|1112574\|35\|CP012309\|CRISPRCasFinder	1112574-1112608	35	CP012309.1	138198-138232	1	0.971
CP012309_6	6.1\|1112574\|35\|CP012309\|CRISPRCasFinder	1112574-1112608	35	CP012309.1	148812-148846	1	0.971

1. spacer 1.1|17891|34|CP012309|CRISPRCasFinder matches to position: 12436-12469, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

2. spacer 1.1|17891|34|CP012309|CRISPRCasFinder matches to position: 32125-32158, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

3. spacer 1.1|17891|34|CP012309|CRISPRCasFinder matches to position: 131190-131223, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

4. spacer 1.1|17891|34|CP012309|CRISPRCasFinder matches to position: 148750-148783, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

5. spacer 1.1|17891|34|CP012309|CRISPRCasFinder matches to position: 1112512-1112545, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

6. spacer 1.1|17891|34|CP012309|CRISPRCasFinder matches to position: 3934454-3934487, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

7. spacer 1.1|17891|34|CP012309|CRISPRCasFinder matches to position: 4074816-4074849, mismatch: 0, identity: 1.0

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

8. spacer 2.1|138138|37|CP012309|CRISPRCasFinder matches to position: 12438-12474, mismatch: 0, identity: 1.0

actgaacgcatgtgaagtttgtttgttggcgctgtgc	CRISPR spacer
actgaacgcatgtgaagtttgtttgttggcgctgtgc	Protospacer
*************************************

9. spacer 2.1|138138|37|CP012309|CRISPRCasFinder matches to position: 32127-32163, mismatch: 0, identity: 1.0

actgaacgcatgtgaagtttgtttgttggcgctgtgc	CRISPR spacer
actgaacgcatgtgaagtttgtttgttggcgctgtgc	Protospacer
*************************************

10. spacer 2.1|138138|37|CP012309|CRISPRCasFinder matches to position: 131192-131228, mismatch: 0, identity: 1.0

actgaacgcatgtgaagtttgtttgttggcgctgtgc	CRISPR spacer
actgaacgcatgtgaagtttgtttgttggcgctgtgc	Protospacer
*************************************

11. spacer 2.1|138138|37|CP012309|CRISPRCasFinder matches to position: 148752-148788, mismatch: 0, identity: 1.0

actgaacgcatgtgaagtttgtttgttggcgctgtgc	CRISPR spacer
actgaacgcatgtgaagtttgtttgttggcgctgtgc	Protospacer
*************************************

12. spacer 2.1|138138|37|CP012309|CRISPRCasFinder matches to position: 1112514-1112550, mismatch: 0, identity: 1.0

actgaacgcatgtgaagtttgtttgttggcgctgtgc	CRISPR spacer
actgaacgcatgtgaagtttgtttgttggcgctgtgc	Protospacer
*************************************

13. spacer 2.1|138138|37|CP012309|CRISPRCasFinder matches to position: 3934449-3934485, mismatch: 0, identity: 1.0

actgaacgcatgtgaagtttgtttgttggcgctgtgc	CRISPR spacer
actgaacgcatgtgaagtttgtttgttggcgctgtgc	Protospacer
*************************************

14. spacer 2.1|138138|37|CP012309|CRISPRCasFinder matches to position: 4074811-4074847, mismatch: 0, identity: 1.0

actgaacgcatgtgaagtttgtttgttggcgctgtgc	CRISPR spacer
actgaacgcatgtgaagtttgtttgttggcgctgtgc	Protospacer
*************************************

15. spacer 4.1|154262|39|CP012309|CRISPRCasFinder matches to position: 12431-12469, mismatch: 0, identity: 1.0

agaataaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
agaataaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
***************************************

16. spacer 4.1|154262|39|CP012309|CRISPRCasFinder matches to position: 131185-131223, mismatch: 0, identity: 1.0

agaataaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
agaataaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
***************************************

17. spacer 4.1|154262|39|CP012309|CRISPRCasFinder matches to position: 148745-148783, mismatch: 0, identity: 1.0

agaataaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
agaataaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
***************************************

18. spacer 4.1|154262|39|CP012309|CRISPRCasFinder matches to position: 3934454-3934492, mismatch: 0, identity: 1.0

agaataaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
agaataaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
***************************************

19. spacer 4.1|154262|39|CP012309|CRISPRCasFinder matches to position: 4074816-4074854, mismatch: 0, identity: 1.0

agaataaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
agaataaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
***************************************

20. spacer 6.1|1112574|35|CP012309|CRISPRCasFinder matches to position: 131252-131286, mismatch: 0, identity: 1.0

aatctgagtgaatacgaaggttgttcgttgacgtg	CRISPR spacer
aatctgagtgaatacgaaggttgttcgttgacgtg	Protospacer
***********************************

21. spacer 6.1|1112574|35|CP012309|CRISPRCasFinder matches to position: 3091875-3091909, mismatch: 0, identity: 1.0

aatctgagtgaatacgaaggttgttcgttgacgtg	CRISPR spacer
aatctgagtgaatacgaaggttgttcgttgacgtg	Protospacer
***********************************

22. spacer 6.1|1112574|35|CP012309|CRISPRCasFinder matches to position: 138198-138232, mismatch: 1, identity: 0.971

aatctgagtgaatacgaaggttgttcgttgacgtg	CRISPR spacer
aatcttagtgaatacgaaggttgttcgttgacgtg	Protospacer
***** *****************************

23. spacer 6.1|1112574|35|CP012309|CRISPRCasFinder matches to position: 148812-148846, mismatch: 1, identity: 0.971

aatctgagtgaatacgaaggttgttcgttgacgtg	CRISPR spacer
aatcttagtgaatacgaaggttgttcgttgacgtg	Protospacer
***** *****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP012309_3	3.1\|146735\|29\|CP012309\|CRISPRCasFinder	146735-146763	29	NZ_CP033215	Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence	5105-5133	0	1.0
CP012309_8	8.13\|1524720\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524720-1524757	38	LN681539	Clostridium phage phiCD505, complete genome	48149-48186	0	1.0
CP012309_8	8.13\|1524720\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524720-1524757	38	LN681542	Clostridium phage phiMMP03, complete genome	49909-49946	0	1.0
CP012309_8	8.13\|1524720\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524720-1524757	38	NC_009231	Clostridium phage phiC2, complete genome	53447-53484	0	1.0
CP012309_8	8.13\|1524720\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524720-1524757	38	JX145341	Clostridium phage phiMMP02, complete genome	47251-47288	0	1.0
CP012309_8	8.13\|1524720\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524720-1524757	38	NC_048642	Clostridium phage CDKM9, complete genome	48593-48630	0	1.0
CP012309_8	8.13\|1524720\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524720-1524757	38	KX228400	Clostridium phage CDKM15, complete genome	49495-49532	0	1.0
CP012309_8	8.30\|1525846\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525846-1525883	38	LN681539	Clostridium phage phiCD505, complete genome	48149-48186	0	1.0
CP012309_8	8.30\|1525846\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525846-1525883	38	LN681542	Clostridium phage phiMMP03, complete genome	49909-49946	0	1.0
CP012309_8	8.30\|1525846\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525846-1525883	38	NC_009231	Clostridium phage phiC2, complete genome	53447-53484	0	1.0
CP012309_8	8.30\|1525846\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525846-1525883	38	JX145341	Clostridium phage phiMMP02, complete genome	47251-47288	0	1.0
CP012309_8	8.30\|1525846\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525846-1525883	38	NC_048642	Clostridium phage CDKM9, complete genome	48593-48630	0	1.0
CP012309_8	8.30\|1525846\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525846-1525883	38	KX228400	Clostridium phage CDKM15, complete genome	49495-49532	0	1.0
CP012309_9	9.8\|1637970\|37\|CP012309\|CRISPRCasFinder,CRT	1637970-1638006	37	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	1094-1130	0	1.0
CP012309_9	9.8\|1637970\|37\|CP012309\|CRISPRCasFinder,CRT	1637970-1638006	37	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	120870-120906	0	1.0
CP012309_9	9.8\|1637970\|37\|CP012309\|CRISPRCasFinder,CRT	1637970-1638006	37	LN681537	Clostridium phage phiCD211, complete genome	129732-129768	0	1.0
CP012309_11	11.2\|1875804\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1875804-1875840	37	LN881738	Escherichia phage slur17, complete genome	4257-4293	0	1.0
CP012309_11	11.2\|1875804\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1875804-1875840	37	KU057941	Clostridium phage CDSH1, complete genome	16144-16180	0	1.0
CP012309_11	11.2\|1875804\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1875804-1875840	37	HM568888	Clostridium phage phiCD38-2, complete genome	15640-15676	0	1.0
CP012309_11	11.3\|1875870\|36\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1875870-1875905	36	HM568888	Clostridium phage phiCD38-2, complete genome	2276-2311	0	1.0
CP012309_11	11.9\|1876263\|36\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876263-1876298	36	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	1856-1891	0	1.0
CP012309_11	11.9\|1876263\|36\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876263-1876298	36	MF547662	Clostridioides phage LIBA6276, complete genome	90641-90676	0	1.0
CP012309_11	11.9\|1876263\|36\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876263-1876298	36	MF547663	Clostridioides phage LIBA2945, complete genome	89181-89216	0	1.0
CP012309_11	11.10\|1876328\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876328-1876364	37	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	97656-97692	0	1.0
CP012309_11	11.10\|1876328\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876328-1876364	37	MF547662	Clostridioides phage LIBA6276, complete genome	51509-51545	0	1.0
CP012309_11	11.10\|1876328\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876328-1876364	37	MF547663	Clostridioides phage LIBA2945, complete genome	51359-51395	0	1.0
CP012309_13	13.5\|2240686\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2240686-2240723	38	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	66583-66620	0	1.0
CP012309_14	14.6\|2601009\|38\|CP012309\|CRISPRCasFinder,CRT,PILER-CR	2601009-2601046	38	LN881738	Escherichia phage slur17, complete genome	792-829	0	1.0
CP012309_14	14.6\|2601009\|38\|CP012309\|CRISPRCasFinder,CRT,PILER-CR	2601009-2601046	38	KU057941	Clostridium phage CDSH1, complete genome	19608-19645	0	1.0
CP012309_14	14.6\|2601009\|38\|CP012309\|CRISPRCasFinder,CRT,PILER-CR	2601009-2601046	38	HM568888	Clostridium phage phiCD38-2, complete genome	19104-19141	0	1.0
CP012309_14	14.6\|2601009\|38\|CP012309\|CRISPRCasFinder,CRT,PILER-CR	2601009-2601046	38	NC_028958	Clostridium phage phiCD146, complete genome	19113-19150	0	1.0
CP012309_21	21.7\|3363307\|35\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363307-3363341	35	LN881738	Escherichia phage slur17, complete genome	25535-25569	0	1.0
CP012309_21	21.7\|3363307\|35\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363307-3363341	35	KU057941	Clostridium phage CDSH1, complete genome	36487-36521	0	1.0
CP012309_21	21.7\|3363307\|35\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363307-3363341	35	NC_028905	Clostridium phage phiCD111, complete genome	36051-36085	0	1.0
CP012309_21	21.7\|3363307\|35\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363307-3363341	35	HM568888	Clostridium phage phiCD38-2, complete genome	35985-36019	0	1.0
CP012309_21	21.14\|3363764\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363764-3363799	36	NZ_MG019959	Clostridioides difficile isolate ERR017368_NODE12 plasmid pCD-WTSI1, complete sequence	475-510	0	1.0
CP012309_21	21.14\|3363764\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363764-3363799	36	NZ_MG019961	Clostridioides difficile isolate ERR125910_NODE5 plasmid pCD-WTSI3, complete sequence	479-514	0	1.0
CP012309_21	21.14\|3363764\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363764-3363799	36	NZ_MG019962	Clostridioides difficile isolate ERR125911_NODE11 plasmid pCD-WTSI4, complete sequence	475-510	0	1.0
CP012309_21	21.14\|3363764\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363764-3363799	36	NZ_MG019960	Clostridioides difficile isolate ERR022513_NODE32 plasmid pCD-WTSI2, complete sequence	475-510	0	1.0
CP012309_1	1.1\|17891\|34\|CP012309\|CRISPRCasFinder	17891-17924	34	NZ_CP033215	Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence	3086-3119	1	0.971
CP012309_2	2.1\|138138\|37\|CP012309\|CRISPRCasFinder	138138-138174	37	NZ_CP033215	Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence	3081-3117	1	0.973
CP012309_4	4.1\|154262\|39\|CP012309\|CRISPRCasFinder	154262-154300	39	NZ_CP033215	Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence	3086-3124	1	0.974
CP012309_8	8.3\|1524059\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524059-1524095	37	GU949551	Clostridium phage phiCD6356, complete genome	14170-14206	1	0.973
CP012309_8	8.7\|1524322\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524322-1524358	37	NC_048665	Clostridium phage phiCDHM14, complete genome	3892-3928	1	0.973
CP012309_8	8.7\|1524322\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524322-1524358	37	HG796225	Clostridium phage phiCDHM13 complete genome	3892-3928	1	0.973
CP012309_8	8.7\|1524322\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524322-1524358	37	HG798901	Clostridium phage phiCDHM11 complete genome	3892-3928	1	0.973
CP012309_8	8.20\|1525185\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525185-1525221	37	GU949551	Clostridium phage phiCD6356, complete genome	14170-14206	1	0.973
CP012309_8	8.24\|1525448\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525448-1525484	37	NC_048665	Clostridium phage phiCDHM14, complete genome	3892-3928	1	0.973
CP012309_8	8.24\|1525448\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525448-1525484	37	HG796225	Clostridium phage phiCDHM13 complete genome	3892-3928	1	0.973
CP012309_8	8.24\|1525448\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525448-1525484	37	HG798901	Clostridium phage phiCDHM11 complete genome	3892-3928	1	0.973
CP012309_9	9.8\|1637970\|37\|CP012309\|CRISPRCasFinder,CRT	1637970-1638006	37	MF547662	Clostridioides phage LIBA6276, complete genome	122145-122181	1	0.973
CP012309_9	9.8\|1637970\|37\|CP012309\|CRISPRCasFinder,CRT	1637970-1638006	37	MF547663	Clostridioides phage LIBA2945, complete genome	120408-120444	1	0.973
CP012309_9	9.9\|1638036\|38\|CP012309\|CRISPRCasFinder,CRT	1638036-1638073	38	NZ_MG019959	Clostridioides difficile isolate ERR017368_NODE12 plasmid pCD-WTSI1, complete sequence	425-462	1	0.974
CP012309_9	9.9\|1638036\|38\|CP012309\|CRISPRCasFinder,CRT	1638036-1638073	38	NZ_MG019961	Clostridioides difficile isolate ERR125910_NODE5 plasmid pCD-WTSI3, complete sequence	429-466	1	0.974
CP012309_9	9.9\|1638036\|38\|CP012309\|CRISPRCasFinder,CRT	1638036-1638073	38	NZ_MG019962	Clostridioides difficile isolate ERR125911_NODE11 plasmid pCD-WTSI4, complete sequence	425-462	1	0.974
CP012309_9	9.9\|1638036\|38\|CP012309\|CRISPRCasFinder,CRT	1638036-1638073	38	NZ_MG019960	Clostridioides difficile isolate ERR022513_NODE32 plasmid pCD-WTSI2, complete sequence	425-462	1	0.974
CP012309_9	9.13\|1638301\|37\|CP012309\|CRISPRCasFinder,CRT	1638301-1638337	37	GU949551	Clostridium phage phiCD6356, complete genome	4081-4117	1	0.973
CP012309_11	11.7\|1876131\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876131-1876167	37	AY855346	Clostridium difficile bacteriophage phi CD119, complete genome	38452-38488	1	0.973
CP012309_11	11.7\|1876131\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876131-1876167	37	NC_007917	Clostridium phage phi CD119, complete genome	38452-38488	1	0.973
CP012309_11	11.7\|1876131\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876131-1876167	37	LN681542	Clostridium phage phiMMP03, complete genome	41194-41230	1	0.973
CP012309_11	11.7\|1876131\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876131-1876167	37	NC_009231	Clostridium phage phiC2, complete genome	44731-44767	1	0.973
CP012309_11	11.7\|1876131\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876131-1876167	37	JX145341	Clostridium phage phiMMP02, complete genome	39376-39412	1	0.973
CP012309_11	11.7\|1876131\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876131-1876167	37	LN681541	Clostridium phage phiMMP01, complete genome	37493-37529	1	0.973
CP012309_11	11.7\|1876131\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876131-1876167	37	KX228400	Clostridium phage CDKM15, complete genome	41716-41752	1	0.973
CP012309_11	11.8\|1876197\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876197-1876233	37	KU057941	Clostridium phage CDSH1, complete genome	15346-15382	1	0.973
CP012309_11	11.8\|1876197\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876197-1876233	37	HM568888	Clostridium phage phiCD38-2, complete genome	14842-14878	1	0.973
CP012309_11	11.8\|1876197\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876197-1876233	37	LN881738	Escherichia phage slur17, complete genome	5055-5091	1	0.973
CP012309_13	13.7\|2240820\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2240820-2240857	38	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	104917-104954	1	0.974
CP012309_13	13.7\|2240820\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2240820-2240857	38	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	17046-17083	1	0.974
CP012309_13	13.7\|2240820\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2240820-2240857	38	LN681537	Clostridium phage phiCD211, complete genome	25908-25945	1	0.974
CP012309_13	13.18\|2241544\|35\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2241544-2241578	35	NC_028905	Clostridium phage phiCD111, complete genome	30751-30785	1	0.971
CP012309_13	13.20\|2241673\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2241673-2241710	38	KU057941	Clostridium phage CDSH1, complete genome	30871-30908	1	0.974
CP012309_13	13.20\|2241673\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2241673-2241710	38	LN881738	Escherichia phage slur17, complete genome	31148-31185	1	0.974
CP012309_13	13.20\|2241673\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2241673-2241710	38	HM568888	Clostridium phage phiCD38-2, complete genome	30363-30400	1	0.974
CP012309_14	14.6\|2601009\|38\|CP012309\|CRISPRCasFinder,CRT,PILER-CR	2601009-2601046	38	NC_028905	Clostridium phage phiCD111, complete genome	19576-19613	1	0.974
CP012309_21	21.7\|3363307\|35\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363307-3363341	35	NC_028958	Clostridium phage phiCD146, complete genome	35500-35534	1	0.971
CP012309_7	7.11\|1311946\|36\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1311946-1311981	36	NC_028996	Clostridium phage phiCDHM19, complete genome	34840-34875	2	0.944
CP012309_9	9.10\|1638103\|37\|CP012309\|CRISPRCasFinder,CRT	1638103-1638139	37	GU949551	Clostridium phage phiCD6356, complete genome	17802-17838	2	0.946
CP012309_9	9.16\|1638497\|37\|CP012309\|CRISPRCasFinder,CRT	1638497-1638533	37	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	102058-102094	2	0.946
CP012309_9	9.17\|1638563\|38\|CP012309\|CRISPRCasFinder,CRT	1638563-1638600	38	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	94861-94898	2	0.947
CP012309_11	11.2\|1875804\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1875804-1875840	37	NC_028958	Clostridium phage phiCD146, complete genome	15649-15685	2	0.946
CP012309_11	11.3\|1875870\|36\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1875870-1875905	36	NC_028958	Clostridium phage phiCD146, complete genome	2281-2316	2	0.944
CP012309_11	11.8\|1876197\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1876197-1876233	37	NC_028958	Clostridium phage phiCD146, complete genome	14851-14887	2	0.946
CP012309_12	12.1\|2189113\|37\|CP012309\|CRISPRCasFinder,CRT	2189113-2189149	37	KU057941	Clostridium phage CDSH1, complete genome	4452-4488	2	0.946
CP012309_12	12.1\|2189113\|37\|CP012309\|CRISPRCasFinder,CRT	2189113-2189149	37	NC_028958	Clostridium phage phiCD146, complete genome	4485-4521	2	0.946
CP012309_12	12.1\|2189113\|37\|CP012309\|CRISPRCasFinder,CRT	2189113-2189149	37	LN680008	Clostridium phage phiCDHS1 gp04 gene for putative capsid protein	1022-1058	2	0.946
CP012309_12	12.1\|2189113\|37\|CP012309\|CRISPRCasFinder,CRT	2189113-2189149	37	LN881738	Escherichia phage slur17, complete genome	15949-15985	2	0.946
CP012309_12	12.5\|2189114\|37\|CP012309\|PILER-CR	2189114-2189150	37	KU057941	Clostridium phage CDSH1, complete genome	4452-4488	2	0.946
CP012309_12	12.5\|2189114\|37\|CP012309\|PILER-CR	2189114-2189150	37	NC_028958	Clostridium phage phiCD146, complete genome	4485-4521	2	0.946
CP012309_12	12.5\|2189114\|37\|CP012309\|PILER-CR	2189114-2189150	37	LN680008	Clostridium phage phiCDHS1 gp04 gene for putative capsid protein	1022-1058	2	0.946
CP012309_12	12.5\|2189114\|37\|CP012309\|PILER-CR	2189114-2189150	37	LN881738	Escherichia phage slur17, complete genome	15949-15985	2	0.946
CP012309_13	13.7\|2240820\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2240820-2240857	38	MF547662	Clostridioides phage LIBA6276, complete genome	24386-24423	2	0.947
CP012309_13	13.7\|2240820\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2240820-2240857	38	MF547663	Clostridioides phage LIBA2945, complete genome	24386-24423	2	0.947
CP012309_14	14.1\|2600682\|36\|CP012309\|CRISPRCasFinder,CRT	2600682-2600717	36	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	22132-22167	2	0.944
CP012309_7	7.11\|1311946\|36\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1311946-1311981	36	AY855346	Clostridium difficile bacteriophage phi CD119, complete genome	31152-31187	3	0.917
CP012309_7	7.11\|1311946\|36\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1311946-1311981	36	NC_007917	Clostridium phage phi CD119, complete genome	31152-31187	3	0.917
CP012309_11	11.1\|1875738\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1875738-1875774	37	NC_028958	Clostridium phage phiCD146, complete genome	39661-39697	3	0.919
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP014419	Staphylococcus aureus strain USA300-SUR15 plasmid pUSA08-1-SUR15, complete sequence	14287-14316	3	0.9
CP012309_13	13.20\|2241673\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2241673-2241710	38	GU949551	Clostridium phage phiCD6356, complete genome	26150-26187	3	0.921
CP012309_13	13.20\|2241673\|38\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2241673-2241710	38	NC_028905	Clostridium phage phiCD111, complete genome	30665-30702	3	0.921
CP012309_16	16.2\|2847452\|23\|CP012309\|PILER-CR	2847452-2847474	23	KJ489400	Bacillus phage Hoody T, complete genome	75255-75277	3	0.87
CP012309_16	16.2\|2847452\|23\|CP012309\|PILER-CR	2847452-2847474	23	MK215646	Bacillus phage vB_BthM-Goe5, complete genome	74409-74431	3	0.87
CP012309_16	16.2\|2847452\|23\|CP012309\|PILER-CR	2847452-2847474	23	KU737346	Bacillus phage Vinny, complete genome	75774-75796	3	0.87
CP012309_16	16.2\|2847452\|23\|CP012309\|PILER-CR	2847452-2847474	23	NC_024207	Bacillus phage Evoli, complete genome	75169-75191	3	0.87
CP012309_16	16.2\|2847452\|23\|CP012309\|PILER-CR	2847452-2847474	23	MF498901	Bacillus phage Anthony, complete genome	76003-76025	3	0.87
CP012309_21	21.5\|3363175\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363175-3363211	37	GU949551	Clostridium phage phiCD6356, complete genome	10259-10295	5	0.865
CP012309_3	3.1\|146735\|29\|CP012309\|CRISPRCasFinder	146735-146763	29	KY971610	Pseudomonas phage PspYZU05, complete genome	134239-134267	6	0.793
CP012309_8	8.13\|1524720\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524720-1524757	38	AY855346	Clostridium difficile bacteriophage phi CD119, complete genome	49365-49402	6	0.842
CP012309_8	8.13\|1524720\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524720-1524757	38	NC_007917	Clostridium phage phi CD119, complete genome	49365-49402	6	0.842
CP012309_8	8.13\|1524720\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524720-1524757	38	NC_028996	Clostridium phage phiCDHM19, complete genome	50570-50607	6	0.842
CP012309_8	8.30\|1525846\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525846-1525883	38	AY855346	Clostridium difficile bacteriophage phi CD119, complete genome	49365-49402	6	0.842
CP012309_8	8.30\|1525846\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525846-1525883	38	NC_007917	Clostridium phage phi CD119, complete genome	49365-49402	6	0.842
CP012309_8	8.30\|1525846\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525846-1525883	38	NC_028996	Clostridium phage phiCDHM19, complete genome	50570-50607	6	0.842
CP012309_9	9.9\|1638036\|38\|CP012309\|CRISPRCasFinder,CRT	1638036-1638073	38	NC_008226	Clostridioides difficile 630 plasmid pCD630, complete sequence	425-462	7	0.816
CP012309_9	9.9\|1638036\|38\|CP012309\|CRISPRCasFinder,CRT	1638036-1638073	38	NZ_CP016319	Clostridioides difficile strain 630 delta erm plasmid pCD630, complete sequence	3327-3364	7	0.816
CP012309_9	9.9\|1638036\|38\|CP012309\|CRISPRCasFinder,CRT	1638036-1638073	38	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	431-468	7	0.816
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	12400-12429	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	63046-63075	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	56930-56959	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	70259-70288	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	169574-169603	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	208330-208359	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	63046-63075	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP007182	Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence	32133-32162	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	857478-857507	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP007752	Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence	38371-38400	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	111425-111454	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	MN895437	Escherichia phage teqskov, complete genome	133992-134021	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	MN994497	Phage NBEco003, complete genome	117255-117284	7	0.767
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	KT184312	Enterobacteria phage Kha5h, complete genome	74684-74713	7	0.767
CP012309_21	21.23\|3364353\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364353-3364388	36	NZ_CP018094	Francisella hispaniensis FSC454 strain CCUG 58020 plasmid pFSC454, complete sequence	5635-5670	7	0.806
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP021787	Acinetobacter baumannii strain A85 plasmid pA85-3, complete sequence	52403-52439	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_MF078634	Acinetobacter pittii strain HGSA488 plasmid pLS488, complete sequence	20453-20489	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP039519	Acinetobacter baumannii strain TG22653 plasmid pTG22653, complete sequence	124139-124175	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP018144	Acinetobacter baumannii strain HRAB-85 plasmid unnamed, complete sequence	56581-56617	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP033130	Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence	105569-105605	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NC_025109	Acinetobacter baumannii strain A85 plasmid pA85-3 clone GC1 AbaR4 resistance island, complete sequence	52404-52440	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP050404	Acinetobacter baumannii strain VB2486 plasmid pVB2486_1, complete sequence	69318-69354	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_LT984690	Acinetobacter baumannii isolate K50 plasmid I, complete sequence	37976-38012	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP050386	Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence	122785-122821	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP008851	Acinetobacter baumannii strain AC29 plasmid pAC29b, complete sequence	62806-62842	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP051872	Acinetobacter baumannii strain Ab-D10a-a plasmid pAb-D10a-a_3, complete sequence	7015-7051	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP027121	Acinetobacter baumannii strain AR_0056 plasmid unnamed2, complete sequence	13417-13453	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_KX118105	Acinetobacter baumannii strain IHIT7853 plasmid IHIT7853-OXA-23, complete sequence	20566-20602	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP020594	Acinetobacter baumannii strain USA15 plasmid pUSA15_1, complete sequence	96829-96865	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP026712	Acinetobacter baumannii strain AR_0063 plasmid unitig_2_pilon, complete sequence	22073-22109	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_KM977710	Acinetobacter baumannii strain D46 plasmid pD46-3, complete sequence	32240-32276	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP026706	Acinetobacter baumannii strain AR_0056 plasmid tig00000059_pilon, complete sequence	51219-51255	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP037425	Acinetobacter johnsonii strain M19 plasmid pFM-M19, complete sequence	27067-27103	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_MG954378	Acinetobacter baumannii strain SGH0905 plasmid pS32-1, complete sequence	9426-9462	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_MG954377	Acinetobacter baumannii strain SGH9601 plasmid pS21-2, complete sequence	118238-118274	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP035052	Acinetobacter baumannii strain ABUH763 plasmid p74.1Kbp, complete sequence	8582-8618	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP012008	Acinetobacter baumannii strain Ab04-mff plasmid pAB04-2, complete sequence	43098-43134	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP016302	Acinetobacter baumannii strain CMC-CR-MDR-Ab66 plasmid pCMCVTAb2-Ab66, complete sequence	48404-48440	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP016297	Acinetobacter baumannii strain CMC-CR-MDR-Ab4 plasmid pCMCVTAb2-Ab4, complete sequence	49299-49335	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NC_017848	Acinetobacter baumannii MDR-TJ plasmid pABTJ1, complete sequence	62530-62566	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_KM922672	Acinetobacter baumannii strain A221 plasmid pAZJ221, complete sequence	70502-70538	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	22351-22387	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP024578	Acinetobacter baumannii strain AbPK1 plasmid pAbPK1b, complete sequence	28168-28204	7	0.811
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	NZ_CP035047	Acinetobacter baumannii strain ABUH793 plasmid p74.1Kbp, complete sequence	8582-8618	7	0.811
CP012309_8	8.13\|1524720\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524720-1524757	38	HG531805	Clostridium phage CDMH1 complete genome	50892-50929	8	0.789
CP012309_8	8.30\|1525846\|38\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525846-1525883	38	HG531805	Clostridium phage CDMH1 complete genome	50892-50929	8	0.789
CP012309_9	9.3\|1637644\|35\|CP012309\|CRISPRCasFinder,CRT	1637644-1637678	35	MN693101	Marine virus AFVG_25M559, complete genome	35519-35553	8	0.771
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	62584-62613	8	0.733
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NC_011247	Borrelia duttonii Ly plasmid pl165, complete sequence	100908-100937	8	0.733
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP028890	Borrelia turcica IST7 plasmid lp34, complete sequence	2065-2094	8	0.733
CP012309_13	13.1\|2240429\|30\|CP012309\|CRT	2240429-2240458	30	NZ_CP017832	Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence	52592-52621	8	0.733
CP012309_13	13.16\|2241413\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2241413-2241448	36	MN693089	Marine virus AFVG_25M562, complete genome	11167-11202	8	0.778
CP012309_21	21.23\|3364353\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364353-3364388	36	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	42888-42923	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NC_006134	Campylobacter coli plasmid pCC31, complete sequence	15612-15647	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP017869	Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence	12514-12549	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	190618-190653	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	12110-12145	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP028186	Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence	30320-30355	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	8263-8298	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	216-251	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	14989-15024	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	12073-12108	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	8502-8537	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	38388-38423	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	9073-9108	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP011017	Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence	30485-30520	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP017030	Campylobacter jejuni subsp. jejuni strain 14980A plasmid pCJ14980A, complete sequence	14816-14851	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP044168	Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence	17840-17875	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	16284-16319	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NZ_CP048762	Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence	22918-22953	8	0.778
CP012309_21	21.32\|3364944\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364944-3364979	36	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	40061-40096	8	0.778
CP012309_8	8.10\|1524521\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1524521-1524557	37	MH733496	Escherichia phage PGN829.1, complete genome	51565-51601	9	0.757
CP012309_8	8.27\|1525647\|37\|CP012309\|PILER-CR,CRISPRCasFinder,CRT	1525647-1525683	37	MH733496	Escherichia phage PGN829.1, complete genome	51565-51601	9	0.757
CP012309_21	21.7\|3363307\|35\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363307-3363341	35	MK295204	Shigella phage vB_SdyM_006, complete genome	8425-8459	9	0.743
CP012309_21	21.23\|3364353\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364353-3364388	36	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	83069-83104	9	0.75
CP012309_21	21.23\|3364353\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364353-3364388	36	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	92393-92428	9	0.75
CP012309_21	21.23\|3364353\|36\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364353-3364388	36	X51344	Spiroplasma phage 1-R8A2B complete genome	5794-5829	9	0.75
CP012309_9	9.6\|1637840\|35\|CP012309\|CRISPRCasFinder,CRT	1637840-1637874	35	NZ_CP033935	Chryseobacterium balustinum strain KC_1863 plasmid unnamed, complete sequence	25554-25588	10	0.714
CP012309_12	12.2\|2189179\|36\|CP012309\|CRISPRCasFinder,CRT	2189179-2189214	36	MG945528	UNVERIFIED: Microviridae sp. isolate 2156-1801, complete genome	1429-1464	10	0.722
CP012309_12	12.6\|2189180\|36\|CP012309\|PILER-CR	2189180-2189215	36	MG945528	UNVERIFIED: Microviridae sp. isolate 2156-1801, complete genome	1429-1464	10	0.722
CP012309_14	14.1\|2600682\|36\|CP012309\|CRISPRCasFinder,CRT	2600682-2600717	36	NZ_CP045274	Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence	47033-47068	10	0.722
CP012309_14	14.7\|2601076\|35\|CP012309\|CRISPRCasFinder,CRT,PILER-CR	2601076-2601110	35	NZ_CP021678	Bacillus licheniformis strain SRCM100027 plasmid pBL027-1 sequence	75875-75909	10	0.714
CP012309_21	21.8\|3363371\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363371-3363407	37	NZ_CP009635	Bacillus cereus 03BB108 plasmid pBFI_6, complete sequence	7115-7151	11	0.703
CP012309_21	21.8\|3363371\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3363371-3363407	37	NZ_CP053967	Bacillus cereus strain FDAARGOS_802 plasmid unnamed6, complete sequence	1566-1602	11	0.703
CP012309_13	13.24\|2241936\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	2241936-2241972	37	MH319723	Marine virus AG-345-D19 Ga0172267_104 genomic sequence	13530-13566	12	0.676
CP012309_21	21.29\|3364745\|37\|CP012309\|CRT,PILER-CR,CRISPRCasFinder	3364745-3364781	37	CP035932	Acinetobacter baumannii strain VB31459 plasmid unnamed2, complete sequence	38934-38962	12	0.676

1. spacer 3.1|146735|29|CP012309|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtaataagttaaagcaatatgaatcaac	CRISPR spacer
tgtaataagttaaagcaatatgaatcaac	Protospacer
*****************************

2. spacer 8.13|1524720|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

3. spacer 8.13|1524720|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

4. spacer 8.13|1524720|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

5. spacer 8.13|1524720|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

6. spacer 8.13|1524720|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

7. spacer 8.13|1524720|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

8. spacer 8.30|1525846|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

9. spacer 8.30|1525846|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

10. spacer 8.30|1525846|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

11. spacer 8.30|1525846|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

12. spacer 8.30|1525846|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

13. spacer 8.30|1525846|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 0, identity: 1.0

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
tagtcaaatattaagttttgagagggaaatctttattt	Protospacer
**************************************

14. spacer 9.8|1637970|37|CP012309|CRISPRCasFinder,CRT matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaaggtcaacttaaaggtagtaattttttaata	CRISPR spacer
tttaaaaggtcaacttaaaggtagtaattttttaata	Protospacer
*************************************

15. spacer 9.8|1637970|37|CP012309|CRISPRCasFinder,CRT matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaaggtcaacttaaaggtagtaattttttaata	CRISPR spacer
tttaaaaggtcaacttaaaggtagtaattttttaata	Protospacer
*************************************

16. spacer 9.8|1637970|37|CP012309|CRISPRCasFinder,CRT matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 0, identity: 1.0

tttaaaaggtcaacttaaaggtagtaattttttaata	CRISPR spacer
tttaaaaggtcaacttaaaggtagtaattttttaata	Protospacer
*************************************

17. spacer 11.2|1875804|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0

tctataacattactagcaaaatcaaggacttggtctt	CRISPR spacer
tctataacattactagcaaaatcaaggacttggtctt	Protospacer
*************************************

18. spacer 11.2|1875804|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0

tctataacattactagcaaaatcaaggacttggtctt	CRISPR spacer
tctataacattactagcaaaatcaaggacttggtctt	Protospacer
*************************************

19. spacer 11.2|1875804|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

tctataacattactagcaaaatcaaggacttggtctt	CRISPR spacer
tctataacattactagcaaaatcaaggacttggtctt	Protospacer
*************************************

20. spacer 11.3|1875870|36|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

tgaacttgaaagcgaagtagtcgggaatgacttttt	CRISPR spacer
tgaacttgaaagcgaagtagtcgggaatgacttttt	Protospacer
************************************

21. spacer 11.9|1876263|36|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttatctatttcacttatattgtcgacatcccactca	CRISPR spacer
ttatctatttcacttatattgtcgacatcccactca	Protospacer
************************************

22. spacer 11.9|1876263|36|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 0, identity: 1.0

ttatctatttcacttatattgtcgacatcccactca	CRISPR spacer
ttatctatttcacttatattgtcgacatcccactca	Protospacer
************************************

23. spacer 11.9|1876263|36|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 0, identity: 1.0

ttatctatttcacttatattgtcgacatcccactca	CRISPR spacer
ttatctatttcacttatattgtcgacatcccactca	Protospacer
************************************

24. spacer 11.10|1876328|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gatggtaaagtaggttctggagcagtaggaaatataa	CRISPR spacer
gatggtaaagtaggttctggagcagtaggaaatataa	Protospacer
*************************************

25. spacer 11.10|1876328|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 0, identity: 1.0

gatggtaaagtaggttctggagcagtaggaaatataa	CRISPR spacer
gatggtaaagtaggttctggagcagtaggaaatataa	Protospacer
*************************************

26. spacer 11.10|1876328|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 0, identity: 1.0

gatggtaaagtaggttctggagcagtaggaaatataa	CRISPR spacer
gatggtaaagtaggttctggagcagtaggaaatataa	Protospacer
*************************************

27. spacer 13.5|2240686|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 0, identity: 1.0

tctattaggcgatttgtaatgtttttatcttcttgtga	CRISPR spacer
tctattaggcgatttgtaatgtttttatcttcttgtga	Protospacer
**************************************

28. spacer 14.6|2601009|38|CP012309|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0

gagaactggagaaatatataattgcataaaatcagaga	CRISPR spacer
gagaactggagaaatatataattgcataaaatcagaga	Protospacer
**************************************

29. spacer 14.6|2601009|38|CP012309|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0

gagaactggagaaatatataattgcataaaatcagaga	CRISPR spacer
gagaactggagaaatatataattgcataaaatcagaga	Protospacer
**************************************

30. spacer 14.6|2601009|38|CP012309|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

gagaactggagaaatatataattgcataaaatcagaga	CRISPR spacer
gagaactggagaaatatataattgcataaaatcagaga	Protospacer
**************************************

31. spacer 14.6|2601009|38|CP012309|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0

gagaactggagaaatatataattgcataaaatcagaga	CRISPR spacer
gagaactggagaaatatataattgcataaaatcagaga	Protospacer
**************************************

32. spacer 21.7|3363307|35|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0

gtttaatatgttaacagatttatttaacagggtaa	CRISPR spacer
gtttaatatgttaacagatttatttaacagggtaa	Protospacer
***********************************

33. spacer 21.7|3363307|35|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0

gtttaatatgttaacagatttatttaacagggtaa	CRISPR spacer
gtttaatatgttaacagatttatttaacagggtaa	Protospacer
***********************************

34. spacer 21.7|3363307|35|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0

gtttaatatgttaacagatttatttaacagggtaa	CRISPR spacer
gtttaatatgttaacagatttatttaacagggtaa	Protospacer
***********************************

35. spacer 21.7|3363307|35|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0

gtttaatatgttaacagatttatttaacagggtaa	CRISPR spacer
gtttaatatgttaacagatttatttaacagggtaa	Protospacer
***********************************

36. spacer 21.14|3363764|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG019959 (Clostridioides difficile isolate ERR017368_NODE12 plasmid pCD-WTSI1, complete sequence) position: , mismatch: 0, identity: 1.0

aatctattttttgaacagataaatacaacaatttat	CRISPR spacer
aatctattttttgaacagataaatacaacaatttat	Protospacer
************************************

37. spacer 21.14|3363764|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG019961 (Clostridioides difficile isolate ERR125910_NODE5 plasmid pCD-WTSI3, complete sequence) position: , mismatch: 0, identity: 1.0

aatctattttttgaacagataaatacaacaatttat	CRISPR spacer
aatctattttttgaacagataaatacaacaatttat	Protospacer
************************************

38. spacer 21.14|3363764|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG019962 (Clostridioides difficile isolate ERR125911_NODE11 plasmid pCD-WTSI4, complete sequence) position: , mismatch: 0, identity: 1.0

aatctattttttgaacagataaatacaacaatttat	CRISPR spacer
aatctattttttgaacagataaatacaacaatttat	Protospacer
************************************

39. spacer 21.14|3363764|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG019960 (Clostridioides difficile isolate ERR022513_NODE32 plasmid pCD-WTSI2, complete sequence) position: , mismatch: 0, identity: 1.0

aatctattttttgaacagataaatacaacaatttat	CRISPR spacer
aatctattttttgaacagataaatacaacaatttat	Protospacer
************************************

40. spacer 1.1|17891|34|CP012309|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.971

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacacatgtgaagtttgtttgttggcgc	Protospacer
*********.************************

41. spacer 2.1|138138|37|CP012309|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.973

actgaacgcatgtgaagtttgtttgttggcgctgtgc	CRISPR spacer
actgaacacatgtgaagtttgtttgttggcgctgtgc	Protospacer
*******.*****************************

42. spacer 4.1|154262|39|CP012309|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.974

agaataaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
agaataaactgaacacatgtgaagtttgtttgttggcgc	Protospacer
**************.************************

43. spacer 8.3|1524059|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.973

gttggattgatgcaaaagtttcttatacagctcttaa	CRISPR spacer
gttggattaatgcaaaagtttcttatacagctcttaa	Protospacer
********.****************************

44. spacer 8.7|1524322|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 1, identity: 0.973

ttaaattcagaagaacaggaggtatttaatagtatta	CRISPR spacer
ttaaattcagaagaacaggagatatttaatagtatta	Protospacer
*********************.***************

45. spacer 8.7|1524322|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 1, identity: 0.973

ttaaattcagaagaacaggaggtatttaatagtatta	CRISPR spacer
ttaaattcagaagaacaggagatatttaatagtatta	Protospacer
*********************.***************

46. spacer 8.7|1524322|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 1, identity: 0.973

ttaaattcagaagaacaggaggtatttaatagtatta	CRISPR spacer
ttaaattcagaagaacaggagatatttaatagtatta	Protospacer
*********************.***************

47. spacer 8.20|1525185|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.973

gttggattgatgcaaaagtttcttatacagctcttaa	CRISPR spacer
gttggattaatgcaaaagtttcttatacagctcttaa	Protospacer
********.****************************

48. spacer 8.24|1525448|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 1, identity: 0.973

ttaaattcagaagaacaggaggtatttaatagtatta	CRISPR spacer
ttaaattcagaagaacaggagatatttaatagtatta	Protospacer
*********************.***************

49. spacer 8.24|1525448|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 1, identity: 0.973

ttaaattcagaagaacaggaggtatttaatagtatta	CRISPR spacer
ttaaattcagaagaacaggagatatttaatagtatta	Protospacer
*********************.***************

50. spacer 8.24|1525448|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 1, identity: 0.973

ttaaattcagaagaacaggaggtatttaatagtatta	CRISPR spacer
ttaaattcagaagaacaggagatatttaatagtatta	Protospacer
*********************.***************

51. spacer 9.8|1637970|37|CP012309|CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 1, identity: 0.973

tttaaaaggtcaacttaaaggtagtaattttttaata	CRISPR spacer
attaaaaggtcaacttaaaggtagtaattttttaata	Protospacer
 ************************************

52. spacer 9.8|1637970|37|CP012309|CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 1, identity: 0.973

tttaaaaggtcaacttaaaggtagtaattttttaata	CRISPR spacer
attaaaaggtcaacttaaaggtagtaattttttaata	Protospacer
 ************************************

53. spacer 9.9|1638036|38|CP012309|CRISPRCasFinder,CRT matches to NZ_MG019959 (Clostridioides difficile isolate ERR017368_NODE12 plasmid pCD-WTSI1, complete sequence) position: , mismatch: 1, identity: 0.974

atattatcatcatttagcaaagaatttgcgtatttttc	CRISPR spacer
atattatcatcatttagcaaagaatttgcgtatttttt	Protospacer
*************************************.

54. spacer 9.9|1638036|38|CP012309|CRISPRCasFinder,CRT matches to NZ_MG019961 (Clostridioides difficile isolate ERR125910_NODE5 plasmid pCD-WTSI3, complete sequence) position: , mismatch: 1, identity: 0.974

atattatcatcatttagcaaagaatttgcgtatttttc	CRISPR spacer
atattatcatcatttagcaaagaatttgcgtatttttt	Protospacer
*************************************.

55. spacer 9.9|1638036|38|CP012309|CRISPRCasFinder,CRT matches to NZ_MG019962 (Clostridioides difficile isolate ERR125911_NODE11 plasmid pCD-WTSI4, complete sequence) position: , mismatch: 1, identity: 0.974

atattatcatcatttagcaaagaatttgcgtatttttc	CRISPR spacer
atattatcatcatttagcaaagaatttgcgtatttttt	Protospacer
*************************************.

56. spacer 9.9|1638036|38|CP012309|CRISPRCasFinder,CRT matches to NZ_MG019960 (Clostridioides difficile isolate ERR022513_NODE32 plasmid pCD-WTSI2, complete sequence) position: , mismatch: 1, identity: 0.974

atattatcatcatttagcaaagaatttgcgtatttttc	CRISPR spacer
atattatcatcatttagcaaagaatttgcgtatttttt	Protospacer
*************************************.

57. spacer 9.13|1638301|37|CP012309|CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.973

cttgtcaagtatcgccctgtcagctgattccatatta	CRISPR spacer
cttgtcaagtatcgccctgtcagctgattctatatta	Protospacer
******************************.******

58. spacer 11.7|1876131|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 1, identity: 0.973

gaaaatcagtttttcgggattttagcttctgaggatt	CRISPR spacer
ggaaatcagtttttcgggattttagcttctgaggatt	Protospacer
*.***********************************

59. spacer 11.7|1876131|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 1, identity: 0.973

gaaaatcagtttttcgggattttagcttctgaggatt	CRISPR spacer
ggaaatcagtttttcgggattttagcttctgaggatt	Protospacer
*.***********************************

60. spacer 11.7|1876131|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 1, identity: 0.973

gaaaatcagtttttcgggattttagcttctgaggatt	CRISPR spacer
ggaaatcagtttttcgggattttagcttctgaggatt	Protospacer
*.***********************************

61. spacer 11.7|1876131|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 1, identity: 0.973

gaaaatcagtttttcgggattttagcttctgaggatt	CRISPR spacer
ggaaatcagtttttcgggattttagcttctgaggatt	Protospacer
*.***********************************

62. spacer 11.7|1876131|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 1, identity: 0.973

gaaaatcagtttttcgggattttagcttctgaggatt	CRISPR spacer
ggaaatcagtttttcgggattttagcttctgaggatt	Protospacer
*.***********************************

63. spacer 11.7|1876131|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 1, identity: 0.973

gaaaatcagtttttcgggattttagcttctgaggatt	CRISPR spacer
ggaaatcagtttttcgggattttagcttctgaggatt	Protospacer
*.***********************************

64. spacer 11.7|1876131|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 1, identity: 0.973

gaaaatcagtttttcgggattttagcttctgaggatt	CRISPR spacer
ggaaatcagtttttcgggattttagcttctgaggatt	Protospacer
*.***********************************

65. spacer 11.8|1876197|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 1, identity: 0.973

gggcaacagaaacattaccaaaaataataaatagcat	CRISPR spacer
gggcaacagaaacattaccagaaataataaatagcat	Protospacer
********************.****************

66. spacer 11.8|1876197|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.973

gggcaacagaaacattaccaaaaataataaatagcat	CRISPR spacer
gggcaacagaaacattaccagaaataataaatagcat	Protospacer
********************.****************

67. spacer 11.8|1876197|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 1, identity: 0.973

gggcaacagaaacattaccaaaaataataaatagcat	CRISPR spacer
gggcaacagaaacattaccagaaataataaatagcat	Protospacer
********************.****************

68. spacer 13.7|2240820|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.974

ctacactctttaatattccaataaatccatagtactca	CRISPR spacer
ttacactctttaatattccaataaatccatagtactca	Protospacer
.*************************************

69. spacer 13.7|2240820|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 1, identity: 0.974

ctacactctttaatattccaataaatccatagtactca	CRISPR spacer
ttacactctttaatattccaataaatccatagtactca	Protospacer
.*************************************

70. spacer 13.7|2240820|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 1, identity: 0.974

ctacactctttaatattccaataaatccatagtactca	CRISPR spacer
ttacactctttaatattccaataaatccatagtactca	Protospacer
.*************************************

71. spacer 13.18|2241544|35|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 1, identity: 0.971

ttagcaagag-aaagcaatctgtgttcaaaaaagag	CRISPR spacer
-tagcaagagaaaagcaatctgtgttcaaaaaagag	Protospacer
 ********* *************************

72. spacer 13.20|2241673|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 1, identity: 0.974

tgatgaagtatggataattttttacttaatgtattatc	CRISPR spacer
tgatgaagtatggataattttttacttaatgtattagc	Protospacer
************************************ *

73. spacer 13.20|2241673|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 1, identity: 0.974

tgatgaagtatggataattttttacttaatgtattatc	CRISPR spacer
tgatgaagtatggataattttttacttaatgtattagc	Protospacer
************************************ *

74. spacer 13.20|2241673|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.974

tgatgaagtatggataattttttacttaatgtattatc	CRISPR spacer
tgatgaagtatggataattttttacttaatgtattagc	Protospacer
************************************ *

75. spacer 14.6|2601009|38|CP012309|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 1, identity: 0.974

gagaactggagaaatatataattgcataaaatcagaga	CRISPR spacer
gagaactggagaaatatataattgcataaaatcagagg	Protospacer
*************************************.

76. spacer 21.7|3363307|35|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 1, identity: 0.971

gtttaatatgttaacagatttatttaacagggtaa	CRISPR spacer
gtttaatatgttaacagatttatttaacagagtaa	Protospacer
******************************.****

77. spacer 7.11|1311946|36|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 2, identity: 0.944

aacaaaaaagatacatctgtaactaatttttatact	CRISPR spacer
agtaaaaaagatacatctgtaactaatttttatact	Protospacer
*..*********************************

78. spacer 9.10|1638103|37|CP012309|CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 2, identity: 0.946

tttaaaataaaatatatttgcctaccatcaactgaag	CRISPR spacer
tttaaaataaaatatatttgtctaccatcaaccgaag	Protospacer
********************.***********.****

79. spacer 9.16|1638497|37|CP012309|CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.946

agcaattctgatatttttattctaatcatttgaaatc	CRISPR spacer
agcaattctgatatttttattctgatcatttaaaatc	Protospacer
***********************.*******.*****

80. spacer 9.17|1638563|38|CP012309|CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.947

ccatcttttgttgctttacataaatttatattacttac	CRISPR spacer
ccatcttttgttgctttgcatagatttatattacttac	Protospacer
*****************.****.***************

81. spacer 11.2|1875804|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.946

tctataacattactagcaaaatcaaggacttggtctt	CRISPR spacer
tctataacgttaccagcaaaatcaaggacttggtctt	Protospacer
********.****.***********************

82. spacer 11.3|1875870|36|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.944

tgaacttgaaagcgaagtagtcgggaatgacttttt	CRISPR spacer
tgaacttgaaagtgaagtggtcgggaatgacttttt	Protospacer
************.*****.*****************

83. spacer 11.8|1876197|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.946

gggcaacagaaacattaccaaaaataataaatagcat	CRISPR spacer
gggcaacagagacattaccagaaataataaatagcat	Protospacer
**********.*********.****************

84. spacer 12.1|2189113|37|CP012309|CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.946

ttaagactagcagactcataagcaattagttgcctct	CRISPR spacer
ttaagaccagcagactcataagcaattagttgtctct	Protospacer
*******.************************.****

85. spacer 12.1|2189113|37|CP012309|CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.946

ttaagactagcagactcataagcaattagttgcctct	CRISPR spacer
ttaagaccagcagactcataagcaattagttgtctct	Protospacer
*******.************************.****

86. spacer 12.1|2189113|37|CP012309|CRISPRCasFinder,CRT matches to LN680008 (Clostridium phage phiCDHS1 gp04 gene for putative capsid protein) position: , mismatch: 2, identity: 0.946

ttaagactagcagactcataagcaattagttgcctct	CRISPR spacer
ttaagaccagcagactcataagcaattagttgtctct	Protospacer
*******.************************.****

87. spacer 12.1|2189113|37|CP012309|CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.946

ttaagactagcagactcataagcaattagttgcctct	CRISPR spacer
ttaagaccagcagactcataagcaattagttgtctct	Protospacer
*******.************************.****

88. spacer 12.5|2189114|37|CP012309|PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.946

ttaagactagcagactcataagcaattagttgcctct	CRISPR spacer
ttaagaccagcagactcataagcaattagttgtctct	Protospacer
*******.************************.****

89. spacer 12.5|2189114|37|CP012309|PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.946

ttaagactagcagactcataagcaattagttgcctct	CRISPR spacer
ttaagaccagcagactcataagcaattagttgtctct	Protospacer
*******.************************.****

90. spacer 12.5|2189114|37|CP012309|PILER-CR matches to LN680008 (Clostridium phage phiCDHS1 gp04 gene for putative capsid protein) position: , mismatch: 2, identity: 0.946

ttaagactagcagactcataagcaattagttgcctct	CRISPR spacer
ttaagaccagcagactcataagcaattagttgtctct	Protospacer
*******.************************.****

91. spacer 12.5|2189114|37|CP012309|PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.946

ttaagactagcagactcataagcaattagttgcctct	CRISPR spacer
ttaagaccagcagactcataagcaattagttgtctct	Protospacer
*******.************************.****

92. spacer 13.7|2240820|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 2, identity: 0.947

ctacactctttaatattccaataaatccatagtactca	CRISPR spacer
ttacactctttaatataccaataaatccatagtactca	Protospacer
.*************** *********************

93. spacer 13.7|2240820|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 2, identity: 0.947

ctacactctttaatattccaataaatccatagtactca	CRISPR spacer
ttacactctttaatataccaataaatccatagtactca	Protospacer
.*************** *********************

94. spacer 14.1|2600682|36|CP012309|CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.944

acaattattaattgttttattagtgaaatcacagca	CRISPR spacer
acaattattaattgttttattaataaaatcacagca	Protospacer
**********************.*.***********

95. spacer 7.11|1311946|36|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 3, identity: 0.917

aacaaaaaagatacatctgtaactaatttttatact	CRISPR spacer
agtaaaaaagatacatctgtaactattttttatact	Protospacer
*..********************** **********

96. spacer 7.11|1311946|36|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 3, identity: 0.917

aacaaaaaagatacatctgtaactaatttttatact	CRISPR spacer
agtaaaaaagatacatctgtaactattttttatact	Protospacer
*..********************** **********

97. spacer 11.1|1875738|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 3, identity: 0.919

ttttataaaaggtctagcaaataattgttagactttt	CRISPR spacer
ccttataaaaggtctagcaaataattgttagaccttt	Protospacer
..*******************************.***

98. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP014419 (Staphylococcus aureus strain USA300-SUR15 plasmid pUSA08-1-SUR15, complete sequence) position: , mismatch: 3, identity: 0.9

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
taaatcaatctttatttaataacaaaaaac	Protospacer
*.* ****************** *******

99. spacer 13.20|2241673|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 3, identity: 0.921

tgatgaagtatggataattttttacttaatgtattatc	CRISPR spacer
tgatgaagtatggataattttttacttaatatactagc	Protospacer
******************************.**.** *

100. spacer 13.20|2241673|38|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 3, identity: 0.921

tgatgaagtatggataattttttacttaatgtattatc	CRISPR spacer
tgatgaagtatggataattttttacttaacatattagc	Protospacer
*****************************..***** *

101. spacer 16.2|2847452|23|CP012309|PILER-CR matches to KJ489400 (Bacillus phage Hoody T, complete genome) position: , mismatch: 3, identity: 0.87

agtagatttatcaagataagaag	CRISPR spacer
tttagatttatcaaaataagaag	Protospacer
  ************.********

102. spacer 16.2|2847452|23|CP012309|PILER-CR matches to MK215646 (Bacillus phage vB_BthM-Goe5, complete genome) position: , mismatch: 3, identity: 0.87

agtagatttatcaagataagaag	CRISPR spacer
tttagatttatcaaaataagaag	Protospacer
  ************.********

103. spacer 16.2|2847452|23|CP012309|PILER-CR matches to KU737346 (Bacillus phage Vinny, complete genome) position: , mismatch: 3, identity: 0.87

agtagatttatcaagataagaag	CRISPR spacer
tttagatttatcaaaataagaag	Protospacer
  ************.********

104. spacer 16.2|2847452|23|CP012309|PILER-CR matches to NC_024207 (Bacillus phage Evoli, complete genome) position: , mismatch: 3, identity: 0.87

agtagatttatcaagataagaag	CRISPR spacer
tttagatttatcaaaataagaag	Protospacer
  ************.********

105. spacer 16.2|2847452|23|CP012309|PILER-CR matches to MF498901 (Bacillus phage Anthony, complete genome) position: , mismatch: 3, identity: 0.87

agtagatttatcaagataagaag	CRISPR spacer
tttagatttatcaaaataagaag	Protospacer
  ************.********

106. spacer 21.5|3363175|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 5, identity: 0.865

caggattagcagcagcgctcggacccgttttacttat	CRISPR spacer
caggattagcagcagcgctcggacctgttcttttaat	Protospacer
*************************.***.* .* **

107. spacer 3.1|146735|29|CP012309|CRISPRCasFinder matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 6, identity: 0.793

tgtaataagttaaagcaatatgaatcaac	CRISPR spacer
tacgataagttacagcaatacgaatcatc	Protospacer
*...******** *******.****** *

108. spacer 8.13|1524720|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 6, identity: 0.842

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
ctagcaattatttagttttgagagggaaatctttattt	Protospacer
. . *** **** *************************

109. spacer 8.13|1524720|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 6, identity: 0.842

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
ctagcaattatttagttttgagagggaaatctttattt	Protospacer
. . *** **** *************************

110. spacer 8.13|1524720|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 6, identity: 0.842

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
ctagcaattatttagttttgagagggaaatctttattt	Protospacer
. . *** **** *************************

111. spacer 8.30|1525846|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 6, identity: 0.842

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
ctagcaattatttagttttgagagggaaatctttattt	Protospacer
. . *** **** *************************

112. spacer 8.30|1525846|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 6, identity: 0.842

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
ctagcaattatttagttttgagagggaaatctttattt	Protospacer
. . *** **** *************************

113. spacer 8.30|1525846|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 6, identity: 0.842

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
ctagcaattatttagttttgagagggaaatctttattt	Protospacer
. . *** **** *************************

114. spacer 9.9|1638036|38|CP012309|CRISPRCasFinder,CRT matches to NC_008226 (Clostridioides difficile 630 plasmid pCD630, complete sequence) position: , mismatch: 7, identity: 0.816

atattatcatcatttagcaaagaatttgcgtatttttc	CRISPR spacer
atattatcatcatttagcaaagaatttaacaaaatatc	Protospacer
***************************.   *  * **

115. spacer 9.9|1638036|38|CP012309|CRISPRCasFinder,CRT matches to NZ_CP016319 (Clostridioides difficile strain 630 delta erm plasmid pCD630, complete sequence) position: , mismatch: 7, identity: 0.816

atattatcatcatttagcaaagaatttgcgtatttttc	CRISPR spacer
atattatcatcatttagcaaagaatttaacaaaatatc	Protospacer
***************************.   *  * **

116. spacer 9.9|1638036|38|CP012309|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 7, identity: 0.816

atattatcatcatttagcaaagaatttgcgtatttttc	CRISPR spacer
atattatcatcatttagcaaagaatttaacaaaatatc	Protospacer
***************************.   *  * **

117. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
tccatcaatctttattaagtaagaaaaaga	Protospacer
*   ************ *.*********.

118. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
tccatcaatctttattaagtaagaaaaaga	Protospacer
*   ************ *.*********.

119. spacer 13.1|2240429|30|CP012309|CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
tccatcaatctttattaagtaagaaaaaga	Protospacer
*   ************ *.*********.

120. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
tccatcaatctttattaagtaagaaaaaga	Protospacer
*   ************ *.*********.

121. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
tccatcaatctttattaagtaagaaaaaga	Protospacer
*   ************ *.*********.

122. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
tccatcaatctttattaagtaagaaaaaga	Protospacer
*   ************ *.*********.

123. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
tccatcaatctttattaagtaagaaaaaga	Protospacer
*   ************ *.*********.

124. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP007182 (Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
ttatttttactttatttaaaaagaaaaaac	Protospacer
* *.*.   ********** **********

125. spacer 13.1|2240429|30|CP012309|CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
taagataatctttattaaatcagaaaaaaa	Protospacer
*.*  .********** *** ********

126. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP007752 (Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
ttatttttactttatttaaaaagaaaaaac	Protospacer
* *.*.   ********** **********

127. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
ttatttttactttatttaaaaagaaaaaac	Protospacer
* *.*.   ********** **********

128. spacer 13.1|2240429|30|CP012309|CRT matches to MN895437 (Escherichia phage teqskov, complete genome) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
taattaaatctttagttaataagaaaatga	Protospacer
*.*.* ******** ************ .

129. spacer 13.1|2240429|30|CP012309|CRT matches to MN994497 (Phage NBEco003, complete genome) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
taattaaatctttagttaataagaaaatga	Protospacer
*.*.* ******** ************ .

130. spacer 13.1|2240429|30|CP012309|CRT matches to KT184312 (Enterobacteria phage Kha5h, complete genome) position: , mismatch: 7, identity: 0.767

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
taattaaatctttagttaataagaaaatga	Protospacer
*.*.* ******** ************ .

131. spacer 21.23|3364353|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018094 (Francisella hispaniensis FSC454 strain CCUG 58020 plasmid pFSC454, complete sequence) position: , mismatch: 7, identity: 0.806

actttaataattaaaatgatatttttaaactaactt	CRISPR spacer
cctttaataattaaattaatatttttaaatttaaat	Protospacer
 ************** *.***********.* *  *

132. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021787 (Acinetobacter baumannii strain A85 plasmid pA85-3, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

133. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MF078634 (Acinetobacter pittii strain HGSA488 plasmid pLS488, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

134. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039519 (Acinetobacter baumannii strain TG22653 plasmid pTG22653, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

135. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018144 (Acinetobacter baumannii strain HRAB-85 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

136. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033130 (Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

137. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NC_025109 (Acinetobacter baumannii strain A85 plasmid pA85-3 clone GC1 AbaR4 resistance island, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

138. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050404 (Acinetobacter baumannii strain VB2486 plasmid pVB2486_1, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

139. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LT984690 (Acinetobacter baumannii isolate K50 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

140. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050386 (Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

141. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP008851 (Acinetobacter baumannii strain AC29 plasmid pAC29b, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

142. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP051872 (Acinetobacter baumannii strain Ab-D10a-a plasmid pAb-D10a-a_3, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

143. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP027121 (Acinetobacter baumannii strain AR_0056 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

144. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KX118105 (Acinetobacter baumannii strain IHIT7853 plasmid IHIT7853-OXA-23, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

145. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020594 (Acinetobacter baumannii strain USA15 plasmid pUSA15_1, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

146. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026712 (Acinetobacter baumannii strain AR_0063 plasmid unitig_2_pilon, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

147. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KM977710 (Acinetobacter baumannii strain D46 plasmid pD46-3, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

148. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026706 (Acinetobacter baumannii strain AR_0056 plasmid tig00000059_pilon, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

149. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP037425 (Acinetobacter johnsonii strain M19 plasmid pFM-M19, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

150. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG954378 (Acinetobacter baumannii strain SGH0905 plasmid pS32-1, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

151. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG954377 (Acinetobacter baumannii strain SGH9601 plasmid pS21-2, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

152. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035052 (Acinetobacter baumannii strain ABUH763 plasmid p74.1Kbp, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

153. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012008 (Acinetobacter baumannii strain Ab04-mff plasmid pAB04-2, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

154. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016302 (Acinetobacter baumannii strain CMC-CR-MDR-Ab66 plasmid pCMCVTAb2-Ab66, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

155. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016297 (Acinetobacter baumannii strain CMC-CR-MDR-Ab4 plasmid pCMCVTAb2-Ab4, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

156. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NC_017848 (Acinetobacter baumannii MDR-TJ plasmid pABTJ1, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

157. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KM922672 (Acinetobacter baumannii strain A221 plasmid pAZJ221, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

158. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

159. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024578 (Acinetobacter baumannii strain AbPK1 plasmid pAbPK1b, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

160. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035047 (Acinetobacter baumannii strain ABUH793 plasmid p74.1Kbp, complete sequence) position: , mismatch: 7, identity: 0.811

agtattcacacagataagaaaattaatcta-ataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatctatatggta-	Protospacer
. ****** ********.************ **..**

161. spacer 8.13|1524720|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 8, identity: 0.789

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
ctaatatatatttaattttgagagggaaatctttattt	Protospacer
. . .* ***** *.***********************

162. spacer 8.30|1525846|38|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 8, identity: 0.789

tagtcaaatattaagttttgagagggaaatctttattt	CRISPR spacer
ctaatatatatttaattttgagagggaaatctttattt	Protospacer
. . .* ***** *.***********************

163. spacer 9.3|1637644|35|CP012309|CRISPRCasFinder,CRT matches to MN693101 (Marine virus AFVG_25M559, complete genome) position: , mismatch: 8, identity: 0.771

tcagaatataatgaacttgaagtaaataagttcat-----	CRISPR spacer
ccagaaaataatgaaattgaagtaaa-----tcatggaaa	Protospacer
.***** ******** **********     ****

164. spacer 13.1|2240429|30|CP012309|CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 8, identity: 0.733

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
cttatcaatcttaatttcataagaaaaatt	Protospacer
.   ******** **** ********** .

165. spacer 13.1|2240429|30|CP012309|CRT matches to NC_011247 (Borrelia duttonii Ly plasmid pl165, complete sequence) position: , mismatch: 8, identity: 0.733

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
cttatcaatcttaatttcataagaaaaatt	Protospacer
.   ******** **** ********** .

166. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP028890 (Borrelia turcica IST7 plasmid lp34, complete sequence) position: , mismatch: 8, identity: 0.733

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
aggtcttatctttatttaaaaagaaaaaaa	Protospacer
 *.... ************ *********

167. spacer 13.1|2240429|30|CP012309|CRT matches to NZ_CP017832 (Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence) position: , mismatch: 8, identity: 0.733

tgactcaatctttatttaataagaaaaaac	CRISPR spacer
aaaagaaatctatatttaataagaagaaag	Protospacer
 .*   ***** *************.***

168. spacer 13.16|2241413|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to MN693089 (Marine virus AFVG_25M562, complete genome) position: , mismatch: 8, identity: 0.778

tatgttgtaaaatcaaagaagctgattgtacaaggt	CRISPR spacer
tgtctggtaaaatgaaagaagctgatggtacagtgg	Protospacer
*.* * ******* ************ *****. *

169. spacer 21.23|3364353|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 8, identity: 0.778

acttta---ataattaaaatgatatttttaaactaactt	CRISPR spacer
---ttaaatataattaaattgatatttttacactatatc	Protospacer
   ***   ********* *********** ****  *.

170. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NC_006134 (Campylobacter coli plasmid pCC31, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

171. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017869 (Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

172. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

173. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

174. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP028186 (Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

175. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

176. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

177. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

178. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

179. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

180. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

181. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

182. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP011017 (Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

183. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017030 (Campylobacter jejuni subsp. jejuni strain 14980A plasmid pCJ14980A, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

184. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044168 (Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

185. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

186. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP048762 (Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

187. spacer 21.32|3364944|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.778

taacttctataatattacccatctcttttaatctaa	CRISPR spacer
actcctatataattttatccatctcttttaatctca	Protospacer
   *.* ****** ***.**************** *

188. spacer 8.10|1524521|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to MH733496 (Escherichia phage PGN829.1, complete genome) position: , mismatch: 9, identity: 0.757

gttcctgctcctgttcctgtaccgggttgattacctg	CRISPR spacer
gaccattctcctgttcctgtaactggttgattacacc	Protospacer
* .* * ************** * ********** .

189. spacer 8.27|1525647|37|CP012309|PILER-CR,CRISPRCasFinder,CRT matches to MH733496 (Escherichia phage PGN829.1, complete genome) position: , mismatch: 9, identity: 0.757

gttcctgctcctgttcctgtaccgggttgattacctg	CRISPR spacer
gaccattctcctgttcctgtaactggttgattacacc	Protospacer
* .* * ************** * ********** .

190. spacer 21.7|3363307|35|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to MK295204 (Shigella phage vB_SdyM_006, complete genome) position: , mismatch: 9, identity: 0.743

gtttaatatgttaacagatttatttaacagggtaa	CRISPR spacer
gtttaatttgtcaacagatttatttgtgtatgcaa	Protospacer
******* ***.*************.   . *.**

191. spacer 21.23|3364353|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 9, identity: 0.75

acttta---ataattaaaatgatatttttaaactaactt	CRISPR spacer
---ttaaatataattaaattgatatttttacactataca	Protospacer
   ***   ********* *********** ****  .

192. spacer 21.23|3364353|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 9, identity: 0.75

acttta---ataattaaaatgatatttttaaactaactt	CRISPR spacer
---ttaaatataattaaattgatatttttacactataca	Protospacer
   ***   ********* *********** ****  .

193. spacer 21.23|3364353|36|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to X51344 (Spiroplasma phage 1-R8A2B complete genome) position: , mismatch: 9, identity: 0.75

acttta---ataattaaaatgatatttttaaactaactt	CRISPR spacer
---ttaaatataattaaattgatatttttacactataca	Protospacer
   ***   ********* *********** ****  .

194. spacer 9.6|1637840|35|CP012309|CRISPRCasFinder,CRT matches to NZ_CP033935 (Chryseobacterium balustinum strain KC_1863 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

atacttggtcaatacatttcaaaagttgcaacaga	CRISPR spacer
caaacggaaaaataaatttgaaaagttgcaacaga	Protospacer
  * . *.  **** **** ***************

195. spacer 12.2|2189179|36|CP012309|CRISPRCasFinder,CRT matches to MG945528 (UNVERIFIED: Microviridae sp. isolate 2156-1801, complete genome) position: , mismatch: 10, identity: 0.722

tttaataataaggagagaaaaaatgaatatttatga	CRISPR spacer
cttcggcctaaggagtgaaaaaatgaaaatttattc	Protospacer
.** .   ******* *********** ******

196. spacer 12.6|2189180|36|CP012309|PILER-CR matches to MG945528 (UNVERIFIED: Microviridae sp. isolate 2156-1801, complete genome) position: , mismatch: 10, identity: 0.722

tttaataataaggagagaaaaaatgaatatttatga	CRISPR spacer
cttcggcctaaggagtgaaaaaatgaaaatttattc	Protospacer
.** .   ******* *********** ******

197. spacer 14.1|2600682|36|CP012309|CRISPRCasFinder,CRT matches to NZ_CP045274 (Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence) position: , mismatch: 10, identity: 0.722

acaattattaattgttttattagtgaaatcacagca	CRISPR spacer
tgaattcttaattgttttattagagaaatacctttt	Protospacer
  **** **************** *****  *  .

198. spacer 14.7|2601076|35|CP012309|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021678 (Bacillus licheniformis strain SRCM100027 plasmid pBL027-1 sequence) position: , mismatch: 10, identity: 0.714

cttgtttcttctgttaattttattataccttgttt	CRISPR spacer
tcggttcctgctgttaattttattatactcatttg	Protospacer
.. ***.** ******************..  **

199. spacer 21.8|3363371|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009635 (Bacillus cereus 03BB108 plasmid pBFI_6, complete sequence) position: , mismatch: 11, identity: 0.703

tgataacttatttaaaaataaatctaatgttgcaatt	CRISPR spacer
tatcaacttatttaaaagttaatctaatgtaatacca	Protospacer
*. .*************.* ********** ..* .

200. spacer 21.8|3363371|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053967 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.703

tgataacttatttaaaaataaatctaatgttgcaatt	CRISPR spacer
tatcaacttatttaaaagttaatctaatgtaatacca	Protospacer
*. .*************.* ********** ..* .

201. spacer 13.24|2241936|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to MH319723 (Marine virus AG-345-D19 Ga0172267_104 genomic sequence) position: , mismatch: 12, identity: 0.676

atttgtctaatatttataataaaaaagttgttttttc	CRISPR spacer
tattgtcaaatatctataataaaaaagtaccaaatat	Protospacer
  ***** *****.**************  .   * .

202. spacer 21.29|3364745|37|CP012309|CRT,PILER-CR,CRISPRCasFinder matches to CP035932 (Acinetobacter baumannii strain VB31459 plasmid unnamed2, complete sequence) position: , mismatch: 12, identity: 0.676

agtattcacacagataagaaaattaatctaataatag	CRISPR spacer
gttattcaaacagataaaaaaattaatct--------	Protospacer
. ****** ********.***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

211665 : 301741

Clostridium_phage(10.34%)

protease,coat,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU70240.1\|211665_212628_+\|protease	membrane-associated CAAX amino terminal protease	NA	NA	NA	NA
AXU70241.1\|212726_213707_-\|protease	membrane-associated caaX amino terminal protease	NA	NA	NA	NA
AXU70242.1\|214834_215302_+	glyoxalase	NA	NA	NA	NA
AXU70243.1\|216407_217070_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-30	38.3
AXU70244.1\|217078_219586_+	ABC transporter permease	NA	NA	NA	NA
AXU70245.1\|219911_220256_+	hypothetical protein	NA	NA	NA	NA
AXU70246.1\|220493_221180_+	two component transcriptional regulator, winged helix family	W8CYM9	Bacillus_phage	5.0e-25	30.2
AXU70247.1\|221190_222432_+	sensor protein	W8CYF6	Bacillus_phage	7.1e-22	29.1
AXU70248.1\|222502_223186_+	ABC transporter ATPase	G9BWD6	Planktothrix_phage	4.8e-36	39.3
AXU70249.1\|223182_225516_+	ABC transporter permease	NA	NA	NA	NA
AXU70250.1\|226299_227649_-	amino acid transporter	NA	NA	NA	NA
AXU70251.1\|227685_228906_-	amidohydrolase/peptidase	NA	NA	NA	NA
AXU70252.1\|229274_231287_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA
AXU70253.1\|231757_232408_+	cyclic nucleotide-binding protein	NA	NA	NA	NA
AXU70254.1\|232547_233924_-	drug/sodium antiporter	NA	NA	NA	NA
AXU70255.1\|233939_235853_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.6e-63	32.4
AXU70256.1\|235988_236621_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
AXU70257.1\|236768_237299_+	formylmethanofuran dehydrogenase subunit E	NA	NA	NA	NA
AXU70258.1\|237474_237645_-	ferredoxin	NA	NA	NA	NA
AXU70259.1\|237929_238997_+	lipoprotein	NA	NA	NA	NA
AXU70260.1\|239166_241068_+	oxidoreductase, acetyl-CoA synthase subunit	NA	NA	NA	NA
AXU70261.1\|241048_241534_+	oxidoreductase, electron transfer subunit	NA	NA	NA	NA
AXU70262.1\|241508_242735_+	oxidoreductase, NAD/FAD binding subunit	NA	NA	NA	NA
AXU70263.1\|242873_244061_-	cyclopropane-fatty-acyl-phospholipid synthase	A0A2I2L5L3	Orpheovirus	5.5e-48	33.8
AXU70264.1\|244333_245158_+	ATP-binding protein	NA	NA	NA	NA
AXU70265.1\|245286_246552_+	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA
AXU70266.1\|246764_247355_+\|protease	membrane-associated metalloprotease	NA	NA	NA	NA
AXU70267.1\|247684_248818_+\|protease	membrane-associated metalloprotease	NA	NA	NA	NA
AXU70268.1\|249733_250756_+	cell wall hydrolase	A0A0A8WF62	Clostridium_phage	4.3e-33	55.8
AXU70269.1\|251051_251972_+	aspartate carbamoyltransferase catalytic chain	M1HWF9	Paramecium_bursaria_Chlorella_virus	7.1e-59	42.5
AXU70270.1\|252010_252703_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA
AXU70271.1\|252695_253598_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA
AXU70272.1\|253682_254267_+	orotate phosphoribosyltransferase	Q58MW1	Prochlorococcus_phage	2.2e-05	28.1
AXU70273.1\|254481_255408_+	ketopantoate reductase	NA	NA	NA	NA
AXU70274.1\|255459_256350_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXU70275.1\|256537_257569_+	membrane protein	NA	NA	NA	NA
AXU70276.1\|257862_258738_+	DNA glycosylase	NA	NA	NA	NA
AXU70277.1\|258755_260246_+	cardiolipin synthetase	NA	NA	NA	NA
AXU70278.1\|260436_260721_+	10 kDa chaperonin	A0A221S4A8	uncultured_virus	1.4e-13	42.6
AXU70279.1\|260753_262382_+	60 kDa chaperonin	A0A240F779	uncultured_virus	7.6e-157	55.7
AXU70280.1\|262643_263384_+	NCAIR mutase-like protein	A0A288TYA6	Enterococcus_phage	4.0e-20	44.8
AXU70281.1\|263467_264202_+	hypothetical protein	NA	NA	NA	NA
AXU70282.1\|264231_264651_+	hypothetical protein	NA	NA	NA	NA
AXU70283.1\|265032_266568_+	GMP synthase	A0A1V0SH76	Hokovirus	1.2e-23	33.7
AXU70284.1\|267106_268537_+	membrane-associated nucleotidase	NA	NA	NA	NA
AXU70285.1\|268684_268993_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXU70286.1\|269029_269551_+	chromate transporter	NA	NA	NA	NA
AXU70287.1\|270225_273654_-	DNA repair protein	A0A1B1IVR3	uncultured_Mediterranean_phage	1.1e-176	37.4
AXU70288.1\|273972_276207_+	signaling protein	NA	NA	NA	NA
AXU70289.1\|276462_278493_+	transcription antiterminator	NA	NA	NA	NA
AXU70290.1\|278489_278942_+	PTS system transporter subunit IIA	NA	NA	NA	NA
AXU70291.1\|278943_279999_+	fructose-like permease EIIC subunit 2	NA	NA	NA	NA
AXU70292.1\|280065_280374_+	PTS system fructose-like transporter subunit EIIB	NA	NA	NA	NA
AXU70293.1\|280477_281743_+	sugar-phosphate kinase	NA	NA	NA	NA
AXU70294.1\|281830_282547_+	hydrolase	NA	NA	NA	NA
AXU70295.1\|282789_283083_-\|coat	spore coat protein	NA	NA	NA	NA
AXU70296.1\|283088_283304_-	hypothetical protein	NA	NA	NA	NA
AXU70297.1\|283751_284150_+\|transposase	transposase	A0A0A8WIU6	Clostridium_phage	2.5e-69	96.2
AXU70298.1\|284146_285310_+\|transposase	transposase	A0A0A8WI33	Clostridium_phage	1.7e-219	99.0
AXU70299.1\|285564_286077_-	nitroreductase	A0A1V0E011	Clostridioides_phage	1.6e-84	88.2
AXU70300.1\|286526_287003_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	6.9e-26	45.8
AXU70301.1\|287008_287707_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	1.5e-45	43.9
AXU70302.1\|287718_289086_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-49	31.0
AXU70303.1\|289079_290156_+	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	2.2e-64	42.2
AXU70304.1\|290149_290743_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.3e-25	40.4
AXU70305.1\|290735_292268_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	2.3e-38	49.7
AXU70306.1\|292278_293529_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
AXU70307.1\|293553_297360_+	formylglycinamidine ribonucleotide synthetase	A6N228	Microbacterium_phage	1.0e-31	24.5
AXU70308.1\|297565_298438_+	dtdp-4-dehydrorhamnose reductase	H9NCE8	Sphingomonas_phage	2.3e-14	30.0
AXU70309.1\|298546_299416_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	8.1e-97	61.1
AXU70310.1\|299464_300022_+	dtdp-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-47	53.6
AXU70311.1\|300059_301043_+	dtdp-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	1.1e-78	47.0
AXU70312.1\|301072_301741_+	transglycosylase	A0A0H3V0Q1	Geobacillus_virus	4.1e-24	46.9

DBSCAN-SWA_2

1448561 : 1473001

Clostridium_phage(54.55%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU71306.1\|1448561_1448762_+	cold shock protein	A0A1W6JNX5	Morganella_phage	2.7e-16	66.2
AXU71307.1\|1449182_1449611_+	regulatory protein	NA	NA	NA	NA
AXU71308.1\|1449753_1450509_-	peptidyl-prolyl isomerase	NA	NA	NA	NA
AXU71309.1\|1450629_1451046_-	hypothetical protein	NA	NA	NA	NA
AXU71310.1\|1451209_1451716_-	phage protein	A0A0A8WEK1	Clostridium_phage	4.0e-56	67.1
AXU71311.1\|1451797_1452118_-	phage repressor	A0A0A8WE28	Clostridium_phage	3.7e-23	54.5
AXU71312.1\|1452286_1452484_+	phage regulatory protein	NA	NA	NA	NA
AXU71313.1\|1452587_1453028_+	DNA-binding protein	A0A090EUN5	Clostridium_phage	6.0e-32	51.4
AXU71314.1\|1453276_1453720_+	hypothetical protein	A0A1V0DZX9	Clostridioides_phage	2.2e-18	36.1
AXU71315.1\|1453724_1454789_+	phage-like element pbsx protein xkdK	A0A1V0DZX4	Clostridioides_phage	7.6e-97	52.8
AXU71316.1\|1454802_1455231_+	phage-like element pbsx protein XkdM	A0A1V0DZX1	Clostridioides_phage	2.8e-34	51.8
AXU71317.1\|1455344_1455791_+	Phage XkdN-like protein	A0A090EUD0	Clostridium_phage	6.3e-13	36.0
AXU71318.1\|1455817_1455985_+	hypothetical protein	NA	NA	NA	NA
AXU71319.1\|1455984_1458438_+	phage protein	A0A1V0DZX3	Clostridioides_phage	6.1e-17	55.7
AXU71320.1\|1458437_1458860_+	phage-like element pbsx protein xkdP	A0A090DBR9	Clostridium_phage	1.7e-52	71.1
AXU71321.1\|1459141_1460671_+	phage cell wall hydrolase	A0A1V0DZX6	Clostridioides_phage	1.0e-243	81.1
AXU71322.1\|1460686_1461013_+	hypothetical protein	J9QE86	Clostridium_phage	1.0e-52	94.4
AXU71323.1\|1461012_1461441_+	phage protein	A0A0A8WJ32	Clostridium_phage	4.4e-64	82.4
AXU71324.1\|1461433_1462486_+	phage protein	A0A0A8WFP3	Clostridium_phage	4.6e-139	70.7
AXU71325.1\|1462482_1463181_+	phage protein	A0A090D815	Clostridium_phage	5.5e-48	56.9
AXU71326.1\|1463181_1464168_+\|tail	phage tail fiber protein	A0A2H4J039	uncultured_Caudovirales_phage	3.4e-59	45.8
AXU71327.1\|1464189_1469421_+	RCC1 domain-containing protein, alpha-tubulin suppressor	A0A0A8WEY5	Clostridium_phage	1.9e-79	27.0
AXU71328.1\|1469437_1469791_+	hypothetical protein	A0A0A8WJF2	Clostridium_phage	1.2e-11	42.1
AXU71329.1\|1470053_1470314_+	hypothetical protein	E2ELK7	Clostridium_phage	9.9e-35	90.6
AXU71330.1\|1470534_1470990_-	hypothetical protein	NA	NA	NA	NA
AXU71331.1\|1471217_1471637_-	phage regulatory protein	S5MUV6	Brevibacillus_phage	5.4e-06	37.2
AXU71332.1\|1471935_1472145_+	phage regulatory protein	Q5YAA3	Bacillus_phage	5.9e-06	47.2
AXU71333.1\|1472176_1472386_+	hypothetical protein	NA	NA	NA	NA
AXU71334.1\|1472602_1473001_-	phage regulatory protein	A0A1L2JY18	Aeribacillus_phage	2.7e-07	29.7

DBSCAN-SWA_3

1556279 : 1566006

Pandoravirus(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU71403.1\|1556279_1556864_+	para-aminobenzoate synthase glutamine amidotransferase component II	A0A0P0IKJ1	Acinetobacter_phage	1.4e-57	52.6
AXU71404.1\|1556865_1558215_+	para-aminobenzoate synthase component I	S4VNU7	Pandoravirus	2.2e-37	41.2
AXU71405.1\|1558204_1558948_+	aminodeoxychorismate lyase	NA	NA	NA	NA
AXU71406.1\|1558981_1559683_+	hypothetical protein	NA	NA	NA	NA
AXU71407.1\|1559708_1560281_+	GTP cyclohydrolase I	E7DN69	Pneumococcus_phage	3.0e-44	51.6
AXU71408.1\|1560344_1561136_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	1.1e-23	28.8
AXU71409.1\|1561146_1561512_+	dihydroneopterin aldolase	NA	NA	NA	NA
AXU71410.1\|1561504_1562011_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	S4VNV0	Pandoravirus	2.7e-12	35.2
AXU71411.1\|1561991_1562777_+	chorismate biosynthesis-like protein	E3T537	Cafeteria_roenbergensis_virus	1.7e-13	27.9
AXU71412.1\|1563031_1564822_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.2e-51	32.6
AXU71413.1\|1564839_1566006_+	RNA polymerase sigma factor (sigma-43)	M4SMP8	Cyanophage	9.6e-37	36.8

DBSCAN-SWA_4

1694266 : 1748519

Clostridium_phage(78.95%)

head,terminase,tail,portal,capsid,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU71526.1\|1694266_1695961_+	acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.5e-49	29.5
AXU71527.1\|1696318_1697449_-	prophage lambdaba04, site-specific recombinase	A0A0A8WIE1	Clostridium_phage	5.0e-216	99.5
AXU71528.1\|1697688_1698195_-	putative Zn peptidase	A0A0A8WEK1	Clostridium_phage	3.7e-86	98.8
AXU71529.1\|1698270_1698882_-	XRE family transcriptional regulator	A0A0A8WJ60	Clostridium_phage	1.2e-30	45.2
AXU71530.1\|1698937_1699501_-	phage repressor	A0A0A8WE28	Clostridium_phage	1.1e-27	57.3
AXU71531.1\|1699653_1699875_+	transcriptional regulator	NA	NA	NA	NA
AXU71532.1\|1699877_1700693_+	phage antirepressor protein	A0A0A8WIE3	Clostridium_phage	1.9e-79	96.2
AXU71533.1\|1700739_1700949_+	hypothetical protein	NA	NA	NA	NA
AXU71534.1\|1700958_1701333_-	hypothetical protein	A0A1L5C299	Pseudoalteromonas_phage	2.2e-11	37.1
AXU71535.1\|1701408_1701606_+	phage regulatory protein	A0A0A8WE47	Clostridium_phage	5.4e-25	90.8
AXU71536.1\|1701636_1702029_+	Helix-turn-helix domain protein	A0A0A8WHS2	Clostridium_phage	6.7e-59	94.6
AXU71537.1\|1702009_1702159_+	hypothetical protein	A0A0A8WIF8	Clostridium_phage	4.2e-14	89.4
AXU71538.1\|1702229_1702667_+	hypothetical protein	NA	NA	NA	NA
AXU71539.1\|1702678_1703845_+	phage-like protein	S5MUB5	Brevibacillus_phage	1.5e-117	55.9
AXU71540.1\|1703859_1704195_+	hypothetical protein	NA	NA	NA	NA
AXU71541.1\|1704247_1704820_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AXU71542.1\|1704842_1705415_+	phage-like protein	S5MC21	Brevibacillus_phage	8.5e-63	66.7
AXU71543.1\|1705414_1707373_+	dna-directed dna polymerase i	A0A0A7RTL3	Clostridium_phage	1.2e-262	68.6
AXU71544.1\|1707384_1709802_+	virulence-associated protein e	A0A0A7RTG3	Clostridium_phage	0.0e+00	68.0
AXU71545.1\|1710082_1710409_+	VRR-NUC domain-containing protein	A0A0A7RTE1	Clostridium_phage	8.4e-15	51.7
AXU71546.1\|1710357_1711728_+	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	A0A1S7FYY5	Listeria_phage	8.4e-157	60.5
AXU71547.1\|1711881_1712361_+	sigma-70 region 4 type 2	I2E8Y5	Clostridium_phage	8.5e-32	45.9
AXU71548.1\|1712503_1712761_+	hypothetical protein	NA	NA	NA	NA
AXU71549.1\|1712906_1713842_+	hypothetical protein	NA	NA	NA	NA
AXU71550.1\|1713860_1714445_+	hypothetical protein	NA	NA	NA	NA
AXU71551.1\|1714457_1715150_+	phage DNA-binding protein	A0A0A8WFS6	Clostridium_phage	1.4e-120	97.8
AXU71552.1\|1715127_1716381_+\|terminase	phage terminase large subunit	X5JAB3	Clostridium_phage	1.4e-243	97.1
AXU71553.1\|1716389_1717829_+\|portal	phage portal protein	X5J9Z4	Clostridium_phage	3.8e-261	91.4
AXU71554.1\|1717818_1719216_+\|head	phage minor head protein	A0A0A8WIE7	Clostridium_phage	7.0e-260	94.8
AXU71555.1\|1719230_1719431_+	hypothetical protein	A0A0A8WJ56	Clostridium_phage	2.3e-31	100.0
AXU71556.1\|1719496_1720060_+	phage scaffold protein	A0A0A8WFU8	Clostridium_phage	2.5e-83	87.2
AXU71557.1\|1720071_1720971_+\|capsid	phage major capsid protein	A0A0A8WFI8	Clostridium_phage	2.8e-169	100.0
AXU71558.1\|1720970_1721204_+	hypothetical protein	A0A0A8WFD0	Clostridium_phage	1.4e-32	97.4
AXU71559.1\|1721213_1721615_+	hypothetical protein	X5JAJ0	Clostridium_phage	8.1e-68	97.0
AXU71560.1\|1721608_1721956_+	phage protein	X5JAV9	Clostridium_phage	5.0e-58	100.0
AXU71561.1\|1721955_1722381_+	phage protein	A0A0A8WFV8	Clostridium_phage	6.1e-74	97.2
AXU71562.1\|1722373_1722811_+	phage protein	X5JAB5	Clostridium_phage	1.5e-75	95.2
AXU71563.1\|1722794_1722980_+	hypothetical protein	A0A0A8WFD8	Clostridium_phage	1.2e-21	91.4
AXU71564.1\|1722981_1724292_+	phage protein	X5JAJ1	Clostridium_phage	4.4e-232	92.7
AXU71565.1\|1724308_1724779_+	phage protein	A0A0A8WJ62	Clostridium_phage	7.0e-71	82.1
AXU71566.1\|1724850_1725291_+	phage protein	X5JAB6	Clostridium_phage	8.6e-47	63.7
AXU71567.1\|1726133_1726238_+	hypothetical protein	A0A090D809	Clostridium_phage	1.9e-05	73.5
AXU71568.1\|1726817_1727699_+	hypothetical protein	NA	NA	NA	NA
AXU71569.1\|1727722_1730113_+\|tail	phage tail tape measure protein	X5JAB7	Clostridium_phage	0.0e+00	75.6
AXU71570.1\|1730124_1730814_+	phage cell wall hydrolase	X5J9Z8	Clostridium_phage	4.1e-120	95.6
AXU71571.1\|1730806_1732771_+	phage cell wall hydrolase	A0A0A8WIF2	Clostridium_phage	1.4e-311	87.7
AXU71572.1\|1732784_1733045_+	phage protein	A3QSB4	Clostridium_virus	5.8e-35	90.7
AXU71573.1\|1733049_1733469_+	phage protein	X5JB38	Clostridium_phage	3.5e-74	99.3
AXU71574.1\|1733469_1734519_+	phage protein	A0A0A8WFK0	Clostridium_phage	9.2e-188	95.7
AXU71575.1\|1734511_1735129_+	phage protein	A0A0A8WII4	Clostridium_phage	4.4e-113	97.6
AXU71576.1\|1735140_1736166_+\|tail	phage tail fiber protein	A3QSB7	Clostridium_virus	1.6e-160	97.4
AXU71577.1\|1736180_1737764_+	Glycine rich protein	A0A0A8WI57	Clostridium_phage	2.4e-176	67.9
AXU71578.1\|1737776_1738076_+	hypothetical protein	A0A0A8WIX5	Clostridium_phage	3.5e-44	92.9
AXU71579.1\|1738075_1738258_+	hypothetical protein	A0A090D845	Clostridium_phage	1.7e-25	100.0
AXU71580.1\|1738290_1738482_+	hypothetical protein	A3QSB9	Clostridium_virus	1.3e-23	93.7
AXU71581.1\|1738498_1739632_+	Ig domain-containing protein	E2ELJ9	Clostridium_phage	1.0e-83	47.5
AXU71582.1\|1739831_1740962_+	Ig domain-containing protein	E2ELJ9	Clostridium_phage	5.6e-50	34.3
AXU71583.1\|1740978_1741344_+	hypothetical protein	E2ELK0	Clostridium_phage	7.1e-55	96.7
AXU71584.1\|1741346_1741502_+	phage protein, XkdX family	E2ELK1	Clostridium_phage	3.0e-15	90.9
AXU71585.1\|1741712_1742393_+\|tail	tail fiber protein H	A3QSC0	Clostridium_virus	3.7e-12	57.8
AXU71586.1\|1742410_1742701_+	hypothetical protein	A3QSC2	Clostridium_virus	1.1e-18	54.6
AXU71587.1\|1742700_1742883_+	hypothetical protein	A3QSC3	Clostridium_virus	5.0e-25	98.3
AXU71588.1\|1743170_1743428_+\|holin	holin	A3QSC5	Clostridium_virus	1.1e-41	100.0
AXU71589.1\|1744630_1745443_+	N-acetylmuramoyl-l-alanine amidase	X5JAJ5	Clostridium_phage	9.7e-153	97.4
AXU71590.1\|1745536_1747936_+	penicillin-binding protein	NA	NA	NA	NA
AXU71591.1\|1747976_1748153_-	putative PemI	A0A0A8WHQ4	Clostridium_phage	4.2e-13	63.8
AXU71592.1\|1748390_1748519_-	hypothetical protein	A0A0A8WEJ5	Clostridium_phage	5.8e-12	95.2

DBSCAN-SWA_5

1832196 : 1842433

Clostridium_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU71665.1\|1832196_1834071_+	asparagine synthetase	A0A2P1ELF7	Moumouvirus	4.7e-25	30.1
AXU71666.1\|1834162_1835599_-\|protease	serine protease	NA	NA	NA	NA
AXU71667.1\|1835855_1836254_+\|transposase	transposase	A0A0A8WIU6	Clostridium_phage	2.5e-69	96.2
AXU71668.1\|1836250_1837414_+\|transposase	transposase	A0A0A8WI33	Clostridium_phage	5.0e-219	98.7
AXU71669.1\|1837773_1838352_+	tellurium resistance protein	A0A0S4KZ16	Pseudomonas_phage	2.1e-16	36.9
AXU71670.1\|1838390_1838969_+	tellurium resistance protein	NA	NA	NA	NA
AXU71671.1\|1839054_1839684_+	tellurium resistance protein	K4JRX3	Caulobacter_phage	1.1e-26	33.8
AXU71672.1\|1839673_1842433_+	calcium-transporting ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	6.5e-92	29.6

DBSCAN-SWA_6

2599374 : 2605705

Clostridium_phage(71.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU72356.1\|2599374_2599827_-	prophage antirepressor-related protein	X5JAW1	Clostridium_phage	2.7e-72	91.9
AXU72357.1\|2599823_2600189_-	phage-related regulatory protein	A0A2R2ZGW3	Clostridioides_phage	4.9e-40	69.0
AXU72358.1\|2600309_2600462_-	hypothetical protein	X5JAJ2	Clostridium_phage	1.6e-05	59.2
AXU72359.1\|2600669_2600819_-	hypothetical protein	NA	NA	NA	NA
AXU72360.1\|2601605_2602520_-	hypothetical protein	NA	NA	NA	NA
AXU72361.1\|2602713_2602866_-	hypothetical protein	J9QED5	Clostridium_phage	9.6e-06	52.0
AXU72362.1\|2603139_2603472_-	hypothetical protein	NA	NA	NA	NA
AXU72363.1\|2603498_2603768_-	hypothetical protein	NA	NA	NA	NA
AXU72364.1\|2603901_2604333_-\|transposase	transposase-like protein B	A0A0H3UZC2	Geobacillus_virus	3.4e-32	63.7
AXU72365.1\|2605031_2605223_-	repressor	A0A0A8WFF9	Clostridium_phage	1.9e-14	68.9
AXU72366.1\|2605327_2605705_-	regulatory protein	A0A0A8WJU1	Clostridium_phage	1.7e-51	88.0

DBSCAN-SWA_7

3158236 : 3167189

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU72836.1\|3158236_3160150_-	capsular polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.1e-26	29.8
AXU72837.1\|3160233_3161325_-	capsular polysaccharide biosynthesis glycosyl transferase	A0A1V0SL50	Klosneuvirus	1.0e-16	26.2
AXU72838.1\|3161330_3162626_-	UDP-glucose 6-dehydrogenase	A0A127AXI2	Bacillus_phage	2.9e-90	43.6
AXU72839.1\|3162651_3163404_-	teichuronic acid biosynthesis glycosyl transferase	A0A1V0SAH6	Catovirus	4.6e-16	40.5
AXU72840.1\|3163451_3164360_-	beta-glycosyltransferase	NA	NA	NA	NA
AXU72841.1\|3164381_3165131_-	teichuronic acid biosynthesis glycosyl transferase	A0A1V0SAH6	Catovirus	1.2e-16	38.8
AXU72842.1\|3165159_3166335_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA
AXU72843.1\|3166349_3167189_-	glycosyl transferase	A0A2P1ELT8	Moumouvirus	7.0e-05	26.3

DBSCAN-SWA_8

3646830 : 3655173

Clostridium_phage(57.14%)

lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU73229.1\|3646830_3648858_-	N-6 DNA methylase	A0A220A2U5	Liberibacter_phage	2.6e-21	24.0
AXU73230.1\|3649153_3649399_-	hypothetical protein	NA	NA	NA	NA
AXU73231.1\|3649468_3650080_-	hypothetical protein	NA	NA	NA	NA
AXU73232.1\|3650303_3650762_+	hypothetical protein	NA	NA	NA	NA
AXU73233.1\|3650788_3651547_-	putative N-acetylmuramoyl-L-alanine amidase	A0A0A8WI59	Clostridium_phage	7.4e-131	86.9
AXU73234.1\|3651684_3651840_-\|holin,lysis	toxin secretion/phage lysis holin	D9ZNF2	Clostridium_phage	1.4e-07	54.0
AXU73235.1\|3651808_3651934_-	hypothetical protein	NA	NA	NA	NA
AXU73236.1\|3652000_3652219_-	hypothetical protein	NA	NA	NA	NA
AXU73237.1\|3652318_3652501_-	hypothetical protein	A3QSC3	Clostridium_virus	2.1e-23	91.5
AXU73238.1\|3652500_3652794_-	hypothetical protein	J9QE35	Clostridium_phage	5.5e-42	85.6
AXU73239.1\|3652810_3654289_-	hypothetical protein	A0A0A8WHY5	Clostridium_phage	1.7e-139	81.6
AXU73240.1\|3654645_3655173_-	hypothetical protein	A0A1S5SAB0	Streptococcus_phage	7.4e-53	60.1

DBSCAN-SWA_9

3817385 : 3877222

Agrobacterium_phage(15.38%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU73377.1\|3817385_3818465_-\|protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	3.3e-15	25.7
AXU73378.1\|3818620_3819970_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AXU73379.1\|3820234_3821863_-	sodium-dependent phosphate transporter	NA	NA	NA	NA
AXU73380.1\|3821964_3823572_-	FAD-dependent dehydrogenase	NA	NA	NA	NA
AXU73381.1\|3823619_3823937_-	hypothetical protein	NA	NA	NA	NA
AXU73382.1\|3823941_3824307_-	hypothetical protein	NA	NA	NA	NA
AXU73383.1\|3824387_3825425_-	protein translocase	NA	NA	NA	NA
AXU73384.1\|3825677_3826262_-	hypothetical protein	NA	NA	NA	NA
AXU73385.1\|3826276_3826720_-	hypothetical protein	NA	NA	NA	NA
AXU73386.1\|3826720_3827593_-	fimbrial assembly protein	NA	NA	NA	NA
AXU73387.1\|3827645_3828005_-	type IV pilin	NA	NA	NA	NA
AXU73388.1\|3828058_3829144_-	type IV pilus-assembly protein	NA	NA	NA	NA
AXU73389.1\|3829314_3830664_-	type IV pilus-assembly protein	NA	NA	NA	NA
AXU73390.1\|3830686_3831367_-	membrane protein	NA	NA	NA	NA
AXU73391.1\|3831757_3832837_-	ATP/GTP-binding protein	NA	NA	NA	NA
AXU73392.1\|3833414_3834785_+	transporter	NA	NA	NA	NA
AXU73393.1\|3835049_3835661_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
AXU73394.1\|3835650_3838014_-\|protease	ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	1.1e-175	44.5
AXU73395.1\|3838193_3838706_+	chromate transport protein	NA	NA	NA	NA
AXU73396.1\|3838693_3839221_+	chromate transport protein	NA	NA	NA	NA
AXU73397.1\|3839291_3840542_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	6.1e-146	63.1
AXU73398.1\|3840560_3841145_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.3e-57	58.8
AXU73399.1\|3841294_3842581_-	trigger factor	NA	NA	NA	NA
AXU73400.1\|3842774_3843245_-	phosphoesterase	NA	NA	NA	NA
AXU73401.1\|3843244_3844594_-	ribonuclease PH	NA	NA	NA	NA
AXU73402.1\|3844753_3846778_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	3.8e-113	37.6
AXU73403.1\|3846963_3847902_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA
AXU73404.1\|3848003_3848426_-	hypothetical protein	NA	NA	NA	NA
AXU73405.1\|3848613_3849897_+	transporter	NA	NA	NA	NA
AXU73406.1\|3849974_3850490_-	electron transport protein	NA	NA	NA	NA
AXU73407.1\|3850489_3851866_-	hydrogenase	NA	NA	NA	NA
AXU73408.1\|3851890_3852442_-	electron transport protein	NA	NA	NA	NA
AXU73409.1\|3852499_3852715_-	hypothetical protein	NA	NA	NA	NA
AXU73410.1\|3852683_3853517_-	formate dehydrogenase accessory protein	NA	NA	NA	NA
AXU73411.1\|3855960_3857019_-	ABC transporter permease	NA	NA	NA	NA
AXU73412.1\|3857229_3857889_-	two-component response regulator	W8CYM9	Bacillus_phage	4.2e-29	33.6
AXU73413.1\|3858199_3858829_+	hypothetical protein	NA	NA	NA	NA
AXU73414.1\|3858855_3859224_+	hypothetical protein	NA	NA	NA	NA
AXU73415.1\|3859308_3860097_-	ABC-2 family transporter protein	NA	NA	NA	NA
AXU73416.1\|3860097_3860970_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.0e-27	34.8
AXU73417.1\|3860984_3862694_-	hypothetical protein	NA	NA	NA	NA
AXU73418.1\|3862840_3863422_-	accessory gene regulator protein	X5JB40	Clostridium_phage	2.9e-18	30.4
AXU73419.1\|3863480_3863621_-	autoinducer prepeptide	NA	NA	NA	NA
AXU73420.1\|3863632_3864949_-	sensor histidine kinase VirS	X5JAC0	Clostridium_phage	3.4e-54	33.2
AXU73421.1\|3864942_3865653_-	LytR family DNA-binding response regulator	A0A2R2ZGH8	Clostridioides_phage	2.2e-28	36.2
AXU73422.1\|3866091_3866667_-	hypothetical protein	NA	NA	NA	NA
AXU73423.1\|3866959_3867238_-	Mor transcription activator domain-containing protein	NA	NA	NA	NA
AXU73424.1\|3867546_3868308_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
AXU73425.1\|3868476_3870537_-	exosporium glycoprotein	A0A285PXU9	Cedratvirus	1.4e-38	64.7
AXU73426.1\|3870615_3871692_-	glycosyl transferase	A0A1V0SAJ8	Catovirus	1.7e-16	25.3
AXU73427.1\|3872003_3872588_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.6e-48	51.3
AXU73428.1\|3872584_3873067_-	AraC family transcription regulator	NA	NA	NA	NA
AXU73429.1\|3873265_3874681_-	GntR family transcriptional regulator	NA	NA	NA	NA
AXU73430.1\|3874795_3875464_+	B3/4 domain protein	NA	NA	NA	NA
AXU73431.1\|3875639_3876158_-	nitroreductase	NA	NA	NA	NA
AXU73432.1\|3876309_3876633_+	transcriptional regulator	NA	NA	NA	NA
AXU73433.1\|3876637_3877222_-\|protease	protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP012309

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection