CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number
CP030364	Salinibacter ruber strain M1 chromosome, complete genome	3 crisprs	NA	1
CP030367	Salinibacter ruber strain M1 plasmid pSR61, complete sequence	1 crisprs	NA	2
CP030368	Salinibacter ruber strain M1 plasmid pSR10, complete sequence	0 crisprs	NA	0
CP030365	Salinibacter ruber strain M1 plasmid pSR116, complete sequence	0 crisprs	NA	0
CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	2 crisprs	NA	38

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030366_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030366_1

47839-49069

Orphan

I-A,II-B,III-A

Consensus_repeat	Method
CTTCTAATCGCACCTTTGAGGTATTGAAAG	PILER-CR
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CRISPRCasFinder
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CRT

18 spacers

The CRISPR arrays of CP030366_1

>merge|CP030366|1|47839-49069|PILER-CR,CRISPRCasFinder,CRT
CTTCTAATCGCACCTTTGAGGTATTGAAAGCACACGGTGAGTTTGTATGGGCTCGTGTGCGACCTCCTTCTAATCGCACCTTTGAGGTATTGAAAGACGTGGACAACCTCGAGAAAGCTTTCTTCGACGCCTTCTAATCGCACCTTTGAGGTATTGAAAGGCCTACTTCCTGCACAGCCAGCCCCGCCGTAACGTCCTTCTAATCGCACCTTTGAGGTATTGAAAGCTCGCCGCAGCAGGCACAAGCGATCCGCTCACCGCCCCTTCTAATCGCACCTTTGAGGTATTGAAAGGGAGACTCAACGGCGTGGAATACCGCGTCAAGATTTTCGCTTCTAATCGCACCTTTGAGGTATTGAAAGGAGCGCGTACATCTGGTATTACTGGACCCGCTTCGCGGCCTTCTAATCGCACCTTTGAGGTATTGAAAGTGCCCTCTACGTCTCTTGTTGGACGGTCAGGGCACCTTCTAATCGCACCTTTGAGGTATTGAAAGACGATACCTTTTTCGACAACGATACATTAGAGTTTAAGCTTCTAATCGCACCTTTGAGGTATTGAAAGTACCCCCACCACGGCAGCGACGGGCTCAGTCCCTTCTTCTAATCGCACCTTTGAGGTATTGAAAGTGGGGTTCGCGTCCACTTTGTAGAAGTGGATTCGCTTCCTTCTAATCGCACCTTTGAGGTATTGAAAGCGGACGGCGGCCACCGGTGGAATGCCCAGCTCCATGCCTTCTAATCGCACCTTTGAGGTATTGAAAGTCGCACCTCATTGAGAATCTCCGCACGACGCAACTGCGCTTCTAATCGCACCTTTGAGGTATTGAAAGTTCTTTTTGAAGAGGTGGGCCGCGAAAATGGCGCTACTTCTAATCGCACCTTTGAGGTATTGAAAGAATAAGCCCTCGCAGGAAGGCGCTGGCGTTGTCCTGCTTCTAATCGCACCTTTGAGGTATTGAAAGCTGATCTCAACGGAGGCATCCTTGAGATGGTAGCAGCTTCTAATCGCACCTTTGAGGTATTGAAAGTTGGCTGCTCGCCTCTTTTCCCCACGTTTTGCGGCGCTTCTAATCGCACCTTTGAGGTATTGAAAGTCGACGGACTTTTCGGGCGACCAGATCGACGGCCTCCACTTCTAATCGCACCTTTGAGGTATTGAAAGCGGAATAGCTTCGGGCCGCCTACGGCATCAGCATCATCTTCTAGTCGCACCTCCACGGGAATGAAGG

>CP030366|1|1|47839-49002|PILER-CR
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CACACGGTGAGTTTGTATGGGCTCGTGTGCGACCTC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	ACGTGGACAACCTCGAGAAAGCTTTCTTCGACGC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	GCCTACTTCCTGCACAGCCAGCCCCGCCGTAACGTC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CTCGCCGCAGCAGGCACAAGCGATCCGCTCACCGCCC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	GGAGACTCAACGGCGTGGAATACCGCGTCAAGATTTTCG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	GAGCGCGTACATCTGGTATTACTGGACCCGCTTCGCGGC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TGCCCTCTACGTCTCTTGTTGGACGGTCAGGGCAC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	ACGATACCTTTTTCGACAACGATACATTAGAGTTTAAG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TACCCCCACCACGGCAGCGACGGGCTCAGTCCCTT
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TGGGGTTCGCGTCCACTTTGTAGAAGTGGATTCGCTTC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CGGACGGCGGCCACCGGTGGAATGCCCAGCTCCATGC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TCGCACCTCATTGAGAATCTCCGCACGACGCAACTGCG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TTCTTTTTGAAGAGGTGGGCCGCGAAAATGGCGCTA
CTTCTAATCGCACCTTTGAGGTATTGAAAG	AATAAGCCCTCGCAGGAAGGCGCTGGCGTTGTCCTG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CTGATCTCAACGGAGGCATCCTTGAGATGGTAGCAG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TTGGCTGCTCGCCTCTTTTCCCCACGTTTTGCGGCG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TCGACGGACTTTTCGGGCGACCAGATCGACGGCCTCCA
CTTCTAATCGCACCTTTGAGGTATTGAAAG

>CP030366|1|1|47839-49069|CRISPRCasFinder
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CACACGGTGAGTTTGTATGGGCTCGTGTGCGACCTC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	ACGTGGACAACCTCGAGAAAGCTTTCTTCGACGC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	GCCTACTTCCTGCACAGCCAGCCCCGCCGTAACGTC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CTCGCCGCAGCAGGCACAAGCGATCCGCTCACCGCCC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	GGAGACTCAACGGCGTGGAATACCGCGTCAAGATTTTCG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	GAGCGCGTACATCTGGTATTACTGGACCCGCTTCGCGGC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TGCCCTCTACGTCTCTTGTTGGACGGTCAGGGCAC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	ACGATACCTTTTTCGACAACGATACATTAGAGTTTAAG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TACCCCCACCACGGCAGCGACGGGCTCAGTCCCTT
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TGGGGTTCGCGTCCACTTTGTAGAAGTGGATTCGCTTC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CGGACGGCGGCCACCGGTGGAATGCCCAGCTCCATGC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TCGCACCTCATTGAGAATCTCCGCACGACGCAACTGCG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TTCTTTTTGAAGAGGTGGGCCGCGAAAATGGCGCTA
CTTCTAATCGCACCTTTGAGGTATTGAAAG	AATAAGCCCTCGCAGGAAGGCGCTGGCGTTGTCCTG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CTGATCTCAACGGAGGCATCCTTGAGATGGTAGCAG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TTGGCTGCTCGCCTCTTTTCCCCACGTTTTGCGGCG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TCGACGGACTTTTCGGGCGACCAGATCGACGGCCTCCA
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CGGAATAGCTTCGGGCCGCCTACGGCATCAGCATCAT
CTTCTAGTCGCACCTCCACGGGAATGAAGG

>CP030366|1|1|47839-49069|CRT
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CACACGGTGAGTTTGTATGGGCTCGTGTGCGACCTC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	ACGTGGACAACCTCGAGAAAGCTTTCTTCGACGC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	GCCTACTTCCTGCACAGCCAGCCCCGCCGTAACGTC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CTCGCCGCAGCAGGCACAAGCGATCCGCTCACCGCCC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	GGAGACTCAACGGCGTGGAATACCGCGTCAAGATTTTCG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	GAGCGCGTACATCTGGTATTACTGGACCCGCTTCGCGGC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TGCCCTCTACGTCTCTTGTTGGACGGTCAGGGCAC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	ACGATACCTTTTTCGACAACGATACATTAGAGTTTAAG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TACCCCCACCACGGCAGCGACGGGCTCAGTCCCTT
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TGGGGTTCGCGTCCACTTTGTAGAAGTGGATTCGCTTC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CGGACGGCGGCCACCGGTGGAATGCCCAGCTCCATGC
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TCGCACCTCATTGAGAATCTCCGCACGACGCAACTGCG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TTCTTTTTGAAGAGGTGGGCCGCGAAAATGGCGCTA
CTTCTAATCGCACCTTTGAGGTATTGAAAG	AATAAGCCCTCGCAGGAAGGCGCTGGCGTTGTCCTG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CTGATCTCAACGGAGGCATCCTTGAGATGGTAGCAG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TTGGCTGCTCGCCTCTTTTCCCCACGTTTTGCGGCG
CTTCTAATCGCACCTTTGAGGTATTGAAAG	TCGACGGACTTTTCGGGCGACCAGATCGACGGCCTCCA
CTTCTAATCGCACCTTTGAGGTATTGAAAG	CGGAATAGCTTCGGGCCGCCTACGGCATCAGCATCAT
CTTCTAGTCGCACCTCCACGGGAATGAAGG

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Crispr_ID: CP030366_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030366_2

52832-54199

Orphan

I-A,II-B,III-A

Consensus_repeat	Method
CTCCTAATCGCACCTTTGAGGTATTGAAAG	PILER-CR
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CRISPRCasFinder
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CRT

20 spacers

The CRISPR arrays of CP030366_2

>merge|CP030366|2|52832-54199|PILER-CR,CRISPRCasFinder,CRT
CTCCTAATCGCACCTTTGAGGTATTGAAAGTCCCCTTGTTGATTTCCTCGTCGGAAATGCCCATGCCCCTCCTAATCGCACCTTTGAGGTATTGAAAGATCCCTCCTTTTTTTCGGGGCCGCGCACAAAATCTAAGGCTCCTAATCGCACCTTTGAGGTATTGAAAGCGCTGTAACGATCGACCGATGTCTGCGAGGCCAATCCTCCTAATCGCACCTTTGAGGTATTGAAAGACGCCCAGCGCGAGGACGACCGCACCATCAAAATCCTCCTAATCGCACCTTTGAGGTATTGAAAGCTCGTAGTTGTTGTGGTAGAGCTCCCGGTTGAGCTCCTCCTAATCGCACCTTTGAGGTATTGAAAGCCGGCTTCCGGCAGGCGCTCGGCCCAGCCATCGCCCGCGACTCCTAATCGCACCTTTGAGGTATTGAAAGCCGGATGTTCAGCCCTTGGACCGGAGACGGCCAGAGGCTCCTAATCGCACCTTTGAGGTATTGAAAGCTATTCGCGTAGGGGTTTTGCGAGTCGCCCCAGCTCCTCCTAATCGCACCTTTGAGGTATTGAAAGCCCTTGCGCTTCGTGTCAATCTTGGAGTCAGGGACAGCTCCTAATCGCACCTTTGAGGTATTGAAAGTCGTTGAGTTTGTCGATGTTTGCCTTGTAGGTCTTCCTCCTAATCGCACCTTTGAGGTATTGAAAGGCGACTCCAACGCGTGCGCCTGCTGAAGCTCGCTAGCTCCTAATCGCACCTTTGAGGTATTGAAAGATCCTTCTACGCCTGTAGAGGTGACGGTCATCGGCCTCCTAATCGCACCTTTGAGGTATTGAAAGATGAAGGTGTTGCGGTTGATAGATCGGTTAGGCATGCTCCTAATCGCACCTTTGAGGTATTGAAAGTGATCGCCGCCCATGCGGTCGCCGCGGCCCCGGCCAACTCCTAATCGCACCTTTGAGGTATTGAAAGTCGATCGTCCACCAGGGCCCGCGCTGGCCCGTGTACCTCCTAATCGCACCTTTGAGGTATTGAAAGTGGCTGGATTTCCCCGAGTCGTGGCAGGTGCAAATCATCTCCTAATCGCACCTTTGAGGTATTGAAAGCCGCCTTCGTGGCCGTCGGCGGTCACGGGCTCCCCTTCTCCTAATCGCACCTTTGAGGTATTGAAAGACTCCCTATTTTCACGGGCTCCCCCTCGACGGGCGAATCGACTCCTAATCGCACCTTTGAGGTATTGAAAGGATGCGGCGCTGCTTGCGCCCCTCGCCGCCGACGTGCTCCTAATCGCACCTTTGAGGTATTGAAAGTCCGGCACGTTCGGGCGCGTGAACAGCTCCACGGAGCTCCTAATCGCACCTTTGGGGTATTGGGTC

>CP030366|2|2|52832-54133|PILER-CR
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCCCCTTGTTGATTTCCTCGTCGGAAATGCCCATGCCC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ATCCCTCCTTTTTTTCGGGGCCGCGCACAAAATCTAAGG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CGCTGTAACGATCGACCGATGTCTGCGAGGCCAATC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ACGCCCAGCGCGAGGACGACCGCACCATCAAAATC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CTCGTAGTTGTTGTGGTAGAGCTCCCGGTTGAGCTC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCGGCTTCCGGCAGGCGCTCGGCCCAGCCATCGCCCGCGA
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCGGATGTTCAGCCCTTGGACCGGAGACGGCCAGAGG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CTATTCGCGTAGGGGTTTTGCGAGTCGCCCCAGCTC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCCTTGCGCTTCGTGTCAATCTTGGAGTCAGGGACAG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCGTTGAGTTTGTCGATGTTTGCCTTGTAGGTCTTC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	GCGACTCCAACGCGTGCGCCTGCTGAAGCTCGCTAG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ATCCTTCTACGCCTGTAGAGGTGACGGTCATCGGC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ATGAAGGTGTTGCGGTTGATAGATCGGTTAGGCATG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TGATCGCCGCCCATGCGGTCGCCGCGGCCCCGGCCAA
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCGATCGTCCACCAGGGCCCGCGCTGGCCCGTGTAC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TGGCTGGATTTCCCCGAGTCGTGGCAGGTGCAAATCAT
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCGCCTTCGTGGCCGTCGGCGGTCACGGGCTCCCCTT
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ACTCCCTATTTTCACGGGCTCCCCCTCGACGGGCGAATCGA
CTCCTAATCGCACCTTTGAGGTATTGAAAG	GATGCGGCGCTGCTTGCGCCCCTCGCCGCCGACGTG
CTCCTAATCGCACCTTTGAGGTATTGAAAG

>CP030366|2|2|52832-54199|CRISPRCasFinder
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCCCCTTGTTGATTTCCTCGTCGGAAATGCCCATGCCC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ATCCCTCCTTTTTTTCGGGGCCGCGCACAAAATCTAAGG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CGCTGTAACGATCGACCGATGTCTGCGAGGCCAATC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ACGCCCAGCGCGAGGACGACCGCACCATCAAAATC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CTCGTAGTTGTTGTGGTAGAGCTCCCGGTTGAGCTC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCGGCTTCCGGCAGGCGCTCGGCCCAGCCATCGCCCGCGA
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCGGATGTTCAGCCCTTGGACCGGAGACGGCCAGAGG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CTATTCGCGTAGGGGTTTTGCGAGTCGCCCCAGCTC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCCTTGCGCTTCGTGTCAATCTTGGAGTCAGGGACAG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCGTTGAGTTTGTCGATGTTTGCCTTGTAGGTCTTC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	GCGACTCCAACGCGTGCGCCTGCTGAAGCTCGCTAG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ATCCTTCTACGCCTGTAGAGGTGACGGTCATCGGC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ATGAAGGTGTTGCGGTTGATAGATCGGTTAGGCATG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TGATCGCCGCCCATGCGGTCGCCGCGGCCCCGGCCAA
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCGATCGTCCACCAGGGCCCGCGCTGGCCCGTGTAC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TGGCTGGATTTCCCCGAGTCGTGGCAGGTGCAAATCAT
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCGCCTTCGTGGCCGTCGGCGGTCACGGGCTCCCCTT
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ACTCCCTATTTTCACGGGCTCCCCCTCGACGGGCGAATCGA
CTCCTAATCGCACCTTTGAGGTATTGAAAG	GATGCGGCGCTGCTTGCGCCCCTCGCCGCCGACGTG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCCGGCACGTTCGGGCGCGTGAACAGCTCCACGGAG
CTCCTAATCGCACCTTTGGGGTATTGGGTC

>CP030366|2|2|52832-54199|CRT
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCCCCTTGTTGATTTCCTCGTCGGAAATGCCCATGCCC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ATCCCTCCTTTTTTTCGGGGCCGCGCACAAAATCTAAGG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CGCTGTAACGATCGACCGATGTCTGCGAGGCCAATC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ACGCCCAGCGCGAGGACGACCGCACCATCAAAATC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CTCGTAGTTGTTGTGGTAGAGCTCCCGGTTGAGCTC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCGGCTTCCGGCAGGCGCTCGGCCCAGCCATCGCCCGCGA
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCGGATGTTCAGCCCTTGGACCGGAGACGGCCAGAGG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CTATTCGCGTAGGGGTTTTGCGAGTCGCCCCAGCTC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCCTTGCGCTTCGTGTCAATCTTGGAGTCAGGGACAG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCGTTGAGTTTGTCGATGTTTGCCTTGTAGGTCTTC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	GCGACTCCAACGCGTGCGCCTGCTGAAGCTCGCTAG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ATCCTTCTACGCCTGTAGAGGTGACGGTCATCGGC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ATGAAGGTGTTGCGGTTGATAGATCGGTTAGGCATG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TGATCGCCGCCCATGCGGTCGCCGCGGCCCCGGCCAA
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCGATCGTCCACCAGGGCCCGCGCTGGCCCGTGTAC
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TGGCTGGATTTCCCCGAGTCGTGGCAGGTGCAAATCAT
CTCCTAATCGCACCTTTGAGGTATTGAAAG	CCGCCTTCGTGGCCGTCGGCGGTCACGGGCTCCCCTT
CTCCTAATCGCACCTTTGAGGTATTGAAAG	ACTCCCTATTTTCACGGGCTCCCCCTCGACGGGCGAATCGA
CTCCTAATCGCACCTTTGAGGTATTGAAAG	GATGCGGCGCTGCTTGCGCCCCTCGCCGCCGACGTG
CTCCTAATCGCACCTTTGAGGTATTGAAAG	TCCGGCACGTTCGGGCGCGTGAACAGCTCCACGGAG
CTCCTAATCGCACCTTTGGGGTATTGGGTC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030366_1	1.1\|47869\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	47869-47904	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	47869-47904	0	1.0
CP030366_1	1.2\|47935\|34\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	47935-47968	34	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	47935-47968	0	1.0
CP030366_1	1.3\|47999\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	47999-48034	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	47999-48034	0	1.0
CP030366_1	1.4\|48065\|37\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48065-48101	37	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48065-48101	0	1.0
CP030366_1	1.5\|48132\|39\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48132-48170	39	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48132-48170	0	1.0
CP030366_1	1.6\|48201\|39\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48201-48239	39	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48201-48239	0	1.0
CP030366_1	1.7\|48270\|35\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48270-48304	35	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48270-48304	0	1.0
CP030366_1	1.8\|48335\|38\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48335-48372	38	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48335-48372	0	1.0
CP030366_1	1.9\|48403\|35\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48403-48437	35	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48403-48437	0	1.0
CP030366_1	1.10\|48468\|38\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48468-48505	38	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48468-48505	0	1.0
CP030366_1	1.11\|48536\|37\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48536-48572	37	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48536-48572	0	1.0
CP030366_1	1.12\|48603\|38\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48603-48640	38	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48603-48640	0	1.0
CP030366_1	1.13\|48671\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48671-48706	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48671-48706	0	1.0
CP030366_1	1.14\|48737\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48737-48772	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48737-48772	0	1.0
CP030366_1	1.15\|48803\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48803-48838	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48803-48838	0	1.0
CP030366_1	1.16\|48869\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48869-48904	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48869-48904	0	1.0
CP030366_1	1.17\|48935\|38\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48935-48972	38	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	48935-48972	0	1.0
CP030366_1	1.18\|49003\|37\|CP030366\|CRISPRCasFinder,CRT	49003-49039	37	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	49003-49039	0	1.0
CP030366_2	2.1\|52862\|38\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	52862-52899	38	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	52862-52899	0	1.0
CP030366_2	2.2\|52930\|39\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	52930-52968	39	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	52930-52968	0	1.0
CP030366_2	2.3\|52999\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	52999-53034	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	52999-53034	0	1.0
CP030366_2	2.4\|53065\|35\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53065-53099	35	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53065-53099	0	1.0
CP030366_2	2.5\|53130\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53130-53165	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53130-53165	0	1.0
CP030366_2	2.6\|53196\|40\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53196-53235	40	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53196-53235	0	1.0
CP030366_2	2.7\|53266\|37\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53266-53302	37	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53266-53302	0	1.0
CP030366_2	2.8\|53333\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53333-53368	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53333-53368	0	1.0
CP030366_2	2.9\|53399\|37\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53399-53435	37	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53399-53435	0	1.0
CP030366_2	2.10\|53466\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53466-53501	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53466-53501	0	1.0
CP030366_2	2.11\|53532\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53532-53567	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53532-53567	0	1.0
CP030366_2	2.12\|53598\|35\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53598-53632	35	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53598-53632	0	1.0
CP030366_2	2.13\|53663\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53663-53698	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53663-53698	0	1.0
CP030366_2	2.14\|53729\|37\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53729-53765	37	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53729-53765	0	1.0
CP030366_2	2.15\|53796\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53796-53831	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53796-53831	0	1.0
CP030366_2	2.16\|53862\|38\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53862-53899	38	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53862-53899	0	1.0
CP030366_2	2.17\|53930\|37\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53930-53966	37	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53930-53966	0	1.0
CP030366_2	2.18\|53997\|41\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53997-54037	41	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	53997-54037	0	1.0
CP030366_2	2.19\|54068\|36\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	54068-54103	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	54068-54103	0	1.0
CP030366_2	2.20\|54134\|36\|CP030366\|CRISPRCasFinder,CRT	54134-54169	36	NZ_CP030366	Salinibacter ruber strain M1 plasmid pSR66, complete sequence	54134-54169	0	1.0
CP030366_2	2.18\|53997\|41\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53997-54037	41	NC_042350	Salinibacter virus M8CR30-2, complete genome	24839-24879	1	0.976
CP030366_2	2.18\|53997\|41\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53997-54037	41	MF580958	Salinibacter virus M8CR30-4, partial genome	25174-25214	1	0.976
CP030366_2	2.18\|53997\|41\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53997-54037	41	NC_042348	Salinibacter virus M1EM-1, partial genome	23540-23580	1	0.976
CP030366_1	1.17\|48935\|38\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48935-48972	38	NC_042348	Salinibacter virus M1EM-1, partial genome	7935-7972	4	0.895
CP030366_1	1.4\|48065\|37\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	48065-48101	37	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1472338-1472374	9	0.757
CP030366_2	2.4\|53065\|35\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53065-53099	35	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	746-780	9	0.743
CP030366_2	2.14\|53729\|37\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53729-53765	37	MN807249	Mycobacterium phage Megiddo, complete genome	40389-40425	9	0.757
CP030366_2	2.4\|53065\|35\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53065-53099	35	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	301417-301451	10	0.714
CP030366_2	2.4\|53065\|35\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53065-53099	35	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	33926-33960	10	0.714
CP030366_2	2.17\|53930\|37\|CP030366\|PILER-CR,CRISPRCasFinder,CRT	53930-53966	37	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	725173-725209	10	0.73

1. spacer 1.1|47869|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

cacacggtgagtttgtatgggctcgtgtgcgacctc	CRISPR spacer
cacacggtgagtttgtatgggctcgtgtgcgacctc	Protospacer
************************************

2. spacer 1.2|47935|34|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

acgtggacaacctcgagaaagctttcttcgacgc	CRISPR spacer
acgtggacaacctcgagaaagctttcttcgacgc	Protospacer
**********************************

3. spacer 1.3|47999|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

gcctacttcctgcacagccagccccgccgtaacgtc	CRISPR spacer
gcctacttcctgcacagccagccccgccgtaacgtc	Protospacer
************************************

4. spacer 1.4|48065|37|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

ctcgccgcagcaggcacaagcgatccgctcaccgccc	CRISPR spacer
ctcgccgcagcaggcacaagcgatccgctcaccgccc	Protospacer
*************************************

5. spacer 1.5|48132|39|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

ggagactcaacggcgtggaataccgcgtcaagattttcg	CRISPR spacer
ggagactcaacggcgtggaataccgcgtcaagattttcg	Protospacer
***************************************

6. spacer 1.6|48201|39|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgcgtacatctggtattactggacccgcttcgcggc	CRISPR spacer
gagcgcgtacatctggtattactggacccgcttcgcggc	Protospacer
***************************************

7. spacer 1.7|48270|35|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tgccctctacgtctcttgttggacggtcagggcac	CRISPR spacer
tgccctctacgtctcttgttggacggtcagggcac	Protospacer
***********************************

8. spacer 1.8|48335|38|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

acgatacctttttcgacaacgatacattagagtttaag	CRISPR spacer
acgatacctttttcgacaacgatacattagagtttaag	Protospacer
**************************************

9. spacer 1.9|48403|35|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tacccccaccacggcagcgacgggctcagtccctt	CRISPR spacer
tacccccaccacggcagcgacgggctcagtccctt	Protospacer
***********************************

10. spacer 1.10|48468|38|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tggggttcgcgtccactttgtagaagtggattcgcttc	CRISPR spacer
tggggttcgcgtccactttgtagaagtggattcgcttc	Protospacer
**************************************

11. spacer 1.11|48536|37|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

cggacggcggccaccggtggaatgcccagctccatgc	CRISPR spacer
cggacggcggccaccggtggaatgcccagctccatgc	Protospacer
*************************************

12. spacer 1.12|48603|38|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcacctcattgagaatctccgcacgacgcaactgcg	CRISPR spacer
tcgcacctcattgagaatctccgcacgacgcaactgcg	Protospacer
**************************************

13. spacer 1.13|48671|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

ttctttttgaagaggtgggccgcgaaaatggcgcta	CRISPR spacer
ttctttttgaagaggtgggccgcgaaaatggcgcta	Protospacer
************************************

14. spacer 1.14|48737|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

aataagccctcgcaggaaggcgctggcgttgtcctg	CRISPR spacer
aataagccctcgcaggaaggcgctggcgttgtcctg	Protospacer
************************************

15. spacer 1.15|48803|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

ctgatctcaacggaggcatccttgagatggtagcag	CRISPR spacer
ctgatctcaacggaggcatccttgagatggtagcag	Protospacer
************************************

16. spacer 1.16|48869|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

ttggctgctcgcctcttttccccacgttttgcggcg	CRISPR spacer
ttggctgctcgcctcttttccccacgttttgcggcg	Protospacer
************************************

17. spacer 1.17|48935|38|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tcgacggacttttcgggcgaccagatcgacggcctcca	CRISPR spacer
tcgacggacttttcgggcgaccagatcgacggcctcca	Protospacer
**************************************

18. spacer 1.18|49003|37|CP030366|CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

cggaatagcttcgggccgcctacggcatcagcatcat	CRISPR spacer
cggaatagcttcgggccgcctacggcatcagcatcat	Protospacer
*************************************

19. spacer 2.1|52862|38|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tccccttgttgatttcctcgtcggaaatgcccatgccc	CRISPR spacer
tccccttgttgatttcctcgtcggaaatgcccatgccc	Protospacer
**************************************

20. spacer 2.2|52930|39|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

atccctcctttttttcggggccgcgcacaaaatctaagg	CRISPR spacer
atccctcctttttttcggggccgcgcacaaaatctaagg	Protospacer
***************************************

21. spacer 2.3|52999|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

cgctgtaacgatcgaccgatgtctgcgaggccaatc	CRISPR spacer
cgctgtaacgatcgaccgatgtctgcgaggccaatc	Protospacer
************************************

22. spacer 2.4|53065|35|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

acgcccagcgcgaggacgaccgcaccatcaaaatc	CRISPR spacer
acgcccagcgcgaggacgaccgcaccatcaaaatc	Protospacer
***********************************

23. spacer 2.5|53130|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

ctcgtagttgttgtggtagagctcccggttgagctc	CRISPR spacer
ctcgtagttgttgtggtagagctcccggttgagctc	Protospacer
************************************

24. spacer 2.6|53196|40|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

ccggcttccggcaggcgctcggcccagccatcgcccgcga	CRISPR spacer
ccggcttccggcaggcgctcggcccagccatcgcccgcga	Protospacer
****************************************

25. spacer 2.7|53266|37|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

ccggatgttcagcccttggaccggagacggccagagg	CRISPR spacer
ccggatgttcagcccttggaccggagacggccagagg	Protospacer
*************************************

26. spacer 2.8|53333|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

ctattcgcgtaggggttttgcgagtcgccccagctc	CRISPR spacer
ctattcgcgtaggggttttgcgagtcgccccagctc	Protospacer
************************************

27. spacer 2.9|53399|37|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

cccttgcgcttcgtgtcaatcttggagtcagggacag	CRISPR spacer
cccttgcgcttcgtgtcaatcttggagtcagggacag	Protospacer
*************************************

28. spacer 2.10|53466|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tcgttgagtttgtcgatgtttgccttgtaggtcttc	CRISPR spacer
tcgttgagtttgtcgatgtttgccttgtaggtcttc	Protospacer
************************************

29. spacer 2.11|53532|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

gcgactccaacgcgtgcgcctgctgaagctcgctag	CRISPR spacer
gcgactccaacgcgtgcgcctgctgaagctcgctag	Protospacer
************************************

30. spacer 2.12|53598|35|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

atccttctacgcctgtagaggtgacggtcatcggc	CRISPR spacer
atccttctacgcctgtagaggtgacggtcatcggc	Protospacer
***********************************

31. spacer 2.13|53663|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

atgaaggtgttgcggttgatagatcggttaggcatg	CRISPR spacer
atgaaggtgttgcggttgatagatcggttaggcatg	Protospacer
************************************

32. spacer 2.14|53729|37|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tgatcgccgcccatgcggtcgccgcggccccggccaa	CRISPR spacer
tgatcgccgcccatgcggtcgccgcggccccggccaa	Protospacer
*************************************

33. spacer 2.15|53796|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tcgatcgtccaccagggcccgcgctggcccgtgtac	CRISPR spacer
tcgatcgtccaccagggcccgcgctggcccgtgtac	Protospacer
************************************

34. spacer 2.16|53862|38|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tggctggatttccccgagtcgtggcaggtgcaaatcat	CRISPR spacer
tggctggatttccccgagtcgtggcaggtgcaaatcat	Protospacer
**************************************

35. spacer 2.17|53930|37|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

ccgccttcgtggccgtcggcggtcacgggctcccctt	CRISPR spacer
ccgccttcgtggccgtcggcggtcacgggctcccctt	Protospacer
*************************************

36. spacer 2.18|53997|41|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

actccctattttcacgggctccccctcgacgggcgaatcga	CRISPR spacer
actccctattttcacgggctccccctcgacgggcgaatcga	Protospacer
*****************************************

37. spacer 2.19|54068|36|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

gatgcggcgctgcttgcgcccctcgccgccgacgtg	CRISPR spacer
gatgcggcgctgcttgcgcccctcgccgccgacgtg	Protospacer
************************************

38. spacer 2.20|54134|36|CP030366|CRISPRCasFinder,CRT matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcacgttcgggcgcgtgaacagctccacggag	CRISPR spacer
tccggcacgttcgggcgcgtgaacagctccacggag	Protospacer
************************************

39. spacer 2.18|53997|41|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NC_042350 (Salinibacter virus M8CR30-2, complete genome) position: , mismatch: 1, identity: 0.976

actccctattttcacgggctccccctcgacgggcgaatcga	CRISPR spacer
actccctattttaacgggctccccctcgacgggcgaatcga	Protospacer
************ ****************************

40. spacer 2.18|53997|41|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to MF580958 (Salinibacter virus M8CR30-4, partial genome) position: , mismatch: 1, identity: 0.976

actccctattttcacgggctccccctcgacgggcgaatcga	CRISPR spacer
actccctattttaacgggctccccctcgacgggcgaatcga	Protospacer
************ ****************************

41. spacer 2.18|53997|41|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NC_042348 (Salinibacter virus M1EM-1, partial genome) position: , mismatch: 1, identity: 0.976

actccctattttcacgggctccccctcgacgggcgaatcga	CRISPR spacer
actccctattttcacgggctccccctcgacgggcgtatcga	Protospacer
*********************************** *****

42. spacer 1.17|48935|38|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NC_042348 (Salinibacter virus M1EM-1, partial genome) position: , mismatch: 4, identity: 0.895

tcgacggacttttcgggcgaccagatcgacggcctcca	CRISPR spacer
agtacggacttttcgggcgaccagatcgacggcctgca	Protospacer
   ******************************** **

43. spacer 1.4|48065|37|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 9, identity: 0.757

ctcgccgcagcaggcacaagcgatccgctcaccgccc	CRISPR spacer
gcaggagcagcaggcgcaagcgatccgctcgccccgc	Protospacer
 . *  *********.**************.** * *

44. spacer 2.4|53065|35|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 9, identity: 0.743

acgcccagcgcgaggacgaccgcaccatcaaaatc	CRISPR spacer
ggctccagcgcgaggacgcccgcaccatcgtcttc	Protospacer
.  .************** **********.   **

45. spacer 2.14|53729|37|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to MN807249 (Mycobacterium phage Megiddo, complete genome) position: , mismatch: 9, identity: 0.757

tgatcgccgcccatgcggtcgccgcggccccggccaa	CRISPR spacer
cgagctgagcccatgcggtcgccgcggacctggcctc	Protospacer
.** *   ******************* **.****

46. spacer 2.4|53065|35|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 10, identity: 0.714

acgcccagcgcgaggacgaccgcaccatcaaaatc	CRISPR spacer
gactccagcgcgaggatgcccgcaccatcgtcttc	Protospacer
.  .************.* **********.   **

47. spacer 2.4|53065|35|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 10, identity: 0.714

acgcccagcgcgaggacgaccgcaccatcaaaatc	CRISPR spacer
aggtcctgcgcgaggacgaccgcgccatcgtgcgg	Protospacer
* *.** ****************.*****. .

48. spacer 2.17|53930|37|CP030366|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.73

ccgccttcgtggccgtcggcggtcacgggctcccctt	CRISPR spacer
cgcacggcgtggccgtcggccgtcacgagctccgccg	Protospacer
*   *  ************* ******.***** *.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP030367

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CRISPR-Cas detection and classification

Crispr_ID: CP030367_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030367_1

30686-30864

Orphan

Consensus_repeat	Method
TCAATCCTGACGGAAACACAGT	PILER-CR

2 spacers

The CRISPR arrays of CP030367_1

>merge|CP030367|1|30686-30864|PILER-CR
CCTGACGGAAACACAGTCGCCCTTAGAAGGCCCTGTAGGTCCTTCCTACTGCCTTAGGACAATGATTTAAGGACTTGAGCCTGTCTCTATCCTGACAGAAACACAGCTAGTGGGCCCGATCTACCTATAGCGGCAGCTCGCTGCCAACCTCAGGCCTTCAATCCTGACGGAAACACAGT

>CP030367|1|1|30686-30864|PILER-CR
CCTGACGGAAACACAGTCGCCC	TTAGAAGGCCCTGTAGGTCCTTCCTACTGCCTTAGGACAATGATTTAAGGACTTGAGCCTGTCTCTAT
CCTGACAGAAACACAGCTAGTG	GGCCCGATCTACCTATAGCGGCAGCTCGCTGCCAACCTCAGGCCTTCAATC
CTGACGGAAACACAGT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030367_1	1.2\|30798\|51\|CP030367\|PILER-CR	30798-30848	51	NZ_CP030367	Salinibacter ruber strain M1 plasmid pSR61, complete sequence	30792-30842	0	1.0
CP030367_1	1.1\|30708\|68\|CP030367\|PILER-CR	30708-30775	68	NZ_CP030367	Salinibacter ruber strain M1 plasmid pSR61, complete sequence	30703-30770	8	0.882

1. spacer 1.2|30798|51|CP030367|PILER-CR matches to NZ_CP030367 (Salinibacter ruber strain M1 plasmid pSR61, complete sequence) position: , mismatch: 0, identity: 1.0

ctagtgggcccgatctacctatagcggcagctcgctgccaacctcaggcct	CRISPR spacer
ctagtgggcccgatctacctatagcggcagctcgctgccaacctcaggcct	Protospacer
***************************************************

2. spacer 1.1|30708|68|CP030367|PILER-CR matches to NZ_CP030367 (Salinibacter ruber strain M1 plasmid pSR61, complete sequence) position: , mismatch: 8, identity: 0.882

cgcccttagaaggccctgtaggtccttcctactgccttaggacaatgatttaaggacttg	CRISPR spacer
cgcccttagaaggccctgtaggtccttcctactgccttaggacaatgatttaaggacttg	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP030364

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CRISPR-Cas detection and classification

Crispr_ID: CP030364_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030364_1

52545-52646

Orphan

Consensus_repeat	Method
CGCGCGACGAGATCGAGGCGGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030364_1

>merge|CP030364|1|52545-52646|CRISPRCasFinder
CGCGCGACGAGATCGAGGCGGAGGCGGAGATCGAAGGCGTGCTCTTCCGCTTCGTCGACACCGCCGGCCTGCGCGACACCGCCGACGAGATCGAGGCGGAGG

>CP030364|1|1|52545-52646|CRISPRCasFinder
CGCGCGACGAGATCGAGGCGGAGG	CGGAGATCGAAGGCGTGCTCTTCCGCTTCGTCGACACCGCCGGCCTGCGCGACA
CCGCCGACGAGATCGAGGCGGAGG

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Crispr_ID: CP030364_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030364_2

2033009-2033103

Orphan

Consensus_repeat	Method
AACGCAACGACGAGCTGCGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030364_2

>merge|CP030364|2|2033009-2033103|CRISPRCasFinder
AACGCAACGACGAGCTGCGGCGCGAAAACATTCAGCTCTCCAGCCAGGTCGCCCGCACCCGCGATGTGCGCCAGCGCAACGACGAGCTGCGGCGC

>CP030364|2|2|2033009-2033103|CRISPRCasFinder
AACGCAACGACGAGCTGCGGCGC	GAAAACATTCAGCTCTCCAGCCAGGTCGCCCGCACCCGCGATGTGCGCC
AGCGCAACGACGAGCTGCGGCGC

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Crispr_ID: CP030364_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030364_3

2724606-2724695

Orphan

Consensus_repeat	Method
GGTGACCCCGCACCCGCGGGGATAGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030364_3

>merge|CP030364|3|2724606-2724695|CRISPRCasFinder
GGTGACCCCGCACCCGCGGGGATAGACCCACCACTACCGGGTCGTGGTCGTCAAGCAGGTAGGTGACCCCGCACCCGCCGGGATAGACCC

>CP030364|3|3|2724606-2724695|CRISPRCasFinder
GGTGACCCCGCACCCGCGGGGATAGACCC	ACCACTACCGGGTCGTGGTCGTCAAGCAGGTA
GGTGACCCCGCACCCGCCGGGATAGACCC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	NZ_LR594663	Variovorax sp. RA8 plasmid 2	396896-396927	8	0.75
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	KY555147	Caulobacter phage Ccr34, complete genome	123468-123499	9	0.719
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	KY555145	Caulobacter phage Ccr29, complete genome	127381-127412	9	0.719
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	KY555143	Caulobacter phage Ccr2, complete genome	122848-122879	9	0.719
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	NC_019410	Caulobacter phage CcrKarma, complete genome	123567-123598	9	0.719
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	KY555146	Caulobacter phage Ccr32, complete genome	123028-123059	9	0.719
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	NC_019407	Caulobacter phage CcrMagneto, complete genome	121756-121787	9	0.719
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	KY555144	Caulobacter phage Ccr5, complete genome	122740-122771	9	0.719
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	JX163858	Caulobacter phage phiCbK, complete genome	84801-84832	9	0.719
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	KY555142	Caulobacter phage Ccr10, complete genome	122373-122404	9	0.719
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	NC_019411	Caulobacter phage CcrSwift, complete genome	122322-122353	9	0.719
CP030364_3	3.1\|2724635\|32\|CP030364\|CRISPRCasFinder	2724635-2724666	32	NZ_CP024587	Roseomonas sp. FDAARGOS_362 plasmid unnamed3, complete sequence	93697-93728	10	0.688

1. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 8, identity: 0.75

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcgactaccgcgtcgtggtcgtcgaggatgcc	Protospacer
.* ******* ************.** * *.

2. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to KY555147 (Caulobacter phage Ccr34, complete genome) position: , mismatch: 9, identity: 0.719

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcggcggccgggtcggggtcgtcgagcaggcc	Protospacer
.* .* .******** *******.******.

3. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to KY555145 (Caulobacter phage Ccr29, complete genome) position: , mismatch: 9, identity: 0.719

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcggcggccgggtcggggtcgtcgagcaggcc	Protospacer
.* .* .******** *******.******.

4. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to KY555143 (Caulobacter phage Ccr2, complete genome) position: , mismatch: 9, identity: 0.719

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcggcggccgggtcggggtcgtcgagcaggcc	Protospacer
.* .* .******** *******.******.

5. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to NC_019410 (Caulobacter phage CcrKarma, complete genome) position: , mismatch: 9, identity: 0.719

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcggcggccgggtcggggtcgtcgagcaggcc	Protospacer
.* .* .******** *******.******.

6. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to KY555146 (Caulobacter phage Ccr32, complete genome) position: , mismatch: 9, identity: 0.719

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcggcggccgggtcggggtcgtcgagcaggcc	Protospacer
.* .* .******** *******.******.

7. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to NC_019407 (Caulobacter phage CcrMagneto, complete genome) position: , mismatch: 9, identity: 0.719

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcggcggccgggtcggggtcgtcgagcaggcc	Protospacer
.* .* .******** *******.******.

8. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to KY555144 (Caulobacter phage Ccr5, complete genome) position: , mismatch: 9, identity: 0.719

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcggcggccgggtcggggtcgtcgagcaggcc	Protospacer
.* .* .******** *******.******.

9. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to JX163858 (Caulobacter phage phiCbK, complete genome) position: , mismatch: 9, identity: 0.719

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcggcggccgggtcggggtcgtcgagcaggcc	Protospacer
.* .* .******** *******.******.

10. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to KY555142 (Caulobacter phage Ccr10, complete genome) position: , mismatch: 9, identity: 0.719

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcggcggccgggtcggggtcgtcgagcaggcc	Protospacer
.* .* .******** *******.******.

11. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to NC_019411 (Caulobacter phage CcrSwift, complete genome) position: , mismatch: 9, identity: 0.719

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
gcggcggccgggtcggggtcgtcgagcaggcc	Protospacer
.* .* .******** *******.******.

12. spacer 3.1|2724635|32|CP030364|CRISPRCasFinder matches to NZ_CP024587 (Roseomonas sp. FDAARGOS_362 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

accactaccgggtcgtggtcgtcaagcaggta	CRISPR spacer
accactaccggggcgtggtggtcgcgggacag	Protospacer
************ ****** ***. * ..  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030366

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP030367

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP030364

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection