CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1 crisprs	csa3	0	3	0	0
CP022759	Ralstonia solanacearum strain T98 chromosome, complete genome	0 crisprs	cas3,WYL,csa3,DEDDh,DinG,PD-DExK	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP022760_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022760_3

1983986-1984087

Orphan

Consensus_repeat	Method
ACGCAGAAACGGGTACGCCCGCAT	PILER-CR

2 spacers

The CRISPR arrays of CP022760_3

>merge|CP022760|3|1983986-1984087|PILER-CR
ACGCAGAAATGGGTACGCCCCGATTTCCGTGGGCCCTCTATTCATACGCAGAAACGGGTACGCCTGCATTTATCGATCTCGCAGAAACGGGTACGCCCGCAT

>CP022760|3|1|1983986-1984087|PILER-CR
ACGCAGAAATGGGTACGCCCCGAT	TTCCGTGGGCCCTCTATTCATACGC
AGAAACGGGTACGCCTGCATTTAT	CGATCTCGCA
GAAACGGGTACGCCCGCAT

Protein	Signature genes	Signature genes Name	Protein_function
CP022760.1\|AXV84663.1\|1971081_1972476_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
CP022760.1\|AXV84667.1\|1977609_1978473_-\|hypothetical-protein	unknown	unknown	unknown
CP022760.1\|AXV84812.1\|1974447_1974822_-\|hypothetical-protein	unknown	unknown	unknown
CP022760.1\|AXV84669.1\|1979691_1982082_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223715
CP022760.1\|AXV84662.1\|1970825_1970993_-\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
CP022760.1\|AXV84664.1\|1973002_1974145_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
CP022760.1\|AXV84668.1\|1978982_1979441_-\|hypothetical-protein	unknown	unknown	unknown
CP022760.1\|AXV84665.1\|1975202_1976705_+\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|237109
CP022760.1\|AXV84813.1\|1982568_1983867_+\|integrase	unknown	unknown	gnl\|CDD\|274042
CP022760.1\|AXV84666.1\|1976784_1977579_+\|DUF2334-domain-containing-protein	unknown	unknown	gnl\|CDD\|225773

Protein	Function_ID	Function_description	E-value
CP022760.1\|AXV84662.1\|1970825_1970993_-\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00029835
CP022760.1\|AXV84664.1\|1973002_1974145_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	4.23667e-141
CP022760.1\|AXV84669.1\|1979691_1982082_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.63616e-49
CP022760.1\|AXV84663.1\|1971081_1972476_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
CP022760.1\|AXV84665.1\|1975202_1976705_+\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|237109	PRK12469, PRK12469, RNA polymerase factor sigma-54; Provisional.	0
CP022760.1\|AXV84813.1\|1982568_1983867_+\|integrase	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	0.00866368
CP022760.1\|AXV84666.1\|1976784_1977579_+\|DUF2334-domain-containing-protein	gnl\|CDD\|225773	COG3233, COG3233, Predicted deacetylase [General function prediction only].	1.77494e-89

>CP022760.1|AXV84813.1|1982568_1983867_+|integrase
MPSTHTVPDASAPGPQPAAGAPPAIHAATEADLLAHARDRERVQAWLDARACGARAVGPSTLSQYRVEAERVCWYARTVGKPIARWQCEDARAYLHFLQAPPAWAISTRGLTRDEAGWTPLRGPLSVRSLRQCSVIAANLCGWLQRNGHLRTNPFLDDDGIVIALPGAVPAALPPAPSPPDPAATLCAHDMALLVDAVRTRVALGREARLRQARDSFLAELLAHAGLRVAELVSARMGDVALHVVPETRRTADPALPPSVWLLGVGTGRAQRWLPCDALMATLRAYRTAFGLSPLPLPSEATPLLLSVRKRSPRRADGTIIDSPALRRDFGERKGIGSRSQLLQIIKTMLAEAAEHARALGHADAAERLAHASLRGLRGAHLRERLASGEAASDIAHALGLATLPSAAVRAREADLASSILEAARRLATPLT
>CP022760.1|AXV84669.1|1979691_1982082_-|hybrid-sensor-histidine-kinase/response-regulator
MREPVISHIVPERGATSAPGRSYGTEPLDVFWVDDLLDGTRLHVSAAAPQRWGMAPDTLCGPRERWLAHVHPGDHAALRAAWQGLAQGRDFALEYRWIGTDGAEHRVRECGYRLPAQAGAATHAVGVVEDMTQRLQALAELTESEFQLQWLAESIPFPIVQLGPDHRIRFANHAYAQRFGLPAADVLGRHVRELMGHEAYQRVLAHLMKGFAGQRVDFEMELEYPHAGQGRRFIHAAYTPQRGADGKVVALVCIIEDITERKEAERERFRHQREFVTLVENAPDIIARLDPALRCVYINRAVTEAFGVPSGELIGRALSDSGLPACVTGPLEAAARCAFDTGGEQALTLQLEADATRLRVMHYNARVIPEADRHGEIESALLIIYDVTERAEAGRERDALLVREQVARAQAEAATHARDQFLAVVSHELRSPLNGIQSWAYVLENQLADGPQLIQRALAGIRTGVAQQVRLIEDLLDATRVMSGKLRLMRQPFPLRTALERALDSVRAQAAERRITVHEAWSLGAQEIDGDADRIQQIVWNLLSNAIKFTQEGGDVWLAADMSGEVARIAVRDNGRGIAPAFVPHLFDPFRQADGSHTRRTGGLGLGLALVKRLTELHGGLVHARSDGEQRGATFTVYLPLHEGAELTAALAEDVVRPGPLPSLGGLRVLLIDDQQDAREALATLLGQVQAEVGSAGSGDEAIALLEDWGSRRRPHAVVCDIALPDEDGYAILQRIRGWERQHLPAGVAQVPAIALTAFAQPHDRARALANGFQEHLSKPVSPRDLVRALRTLARR
>CP022760.1|AXV84668.1|1978982_1979441_-|hypothetical-protein
MNQPPRSGVRSPLTRDGTPTQGPASAQVSDAKPAAAPPHTARERVEAALSEPEHEVQSSVHGACLPHERDEYVADQGSGPRDDIEQAARDIESGLLDTDLHDTQGLECVVRERHAAGNGDPDRELANRTADAIERNRQMPDAPSSGTGERKR
>CP022760.1|AXV84667.1|1977609_1978473_-|hypothetical-protein
MRGKLRAVALGCVAVGLLAACGGGGDSGSSSVSASAGGVASQADSAWLGSDCFVVPGTGKTATVTASFVAPVEVDVATVTGLGSQTFEGQSYTALDVRNRIDQVLNSEQHHTLYMLPNAPYLPAGAITFPSAGDADPQQRYAYTYAAMTLEQLRSAIQSGKATFSPLVVPALQPVVPSVANFKLNTPVTLTMFEKRAGGTDPMGSSFTSRYIKELTLTYAGRESVAAGGTTYGQACRMNVSVRRTNFNALPFSIETVGRATLWFAPNVGLVKISMDGMDTAIVPVAN
>CP022760.1|AXV84666.1|1976784_1977579_+|DUF2334-domain-containing-protein
MSRYLVIAMHDVTPANWPACSVLLSALDKVCPVPKSLLVIPNFYRGPTARGSERFCRVLTERLEQGDELVLHGHAHLDEQPPSGFVDQLIRTHYTTGEGEFSVMPLRAARRRLEAGAAWFAANGWPLHGFVAPAWLMSAATWQALDALPLRYTTTLRHFYLLHPSRPVLAPCLTYSVQTAPRRMVSRYYVRWLAHHHAHAPLLRLGLHPADAAHPDVIRHWQDLLAACLETRVPVTKNGFAQAFAEALMGKPDVPLTGRPQASY
>CP022760.1|AXV84665.1|1975202_1976705_+|RNA-polymerase-factor-sigma-54
MVKAALEMRAKQHLALTPRLQQSVKLLQLSATEFAQEMQEALTSNPFLEEVEDNTGTPPEAARAGEAMPGSEADSAAADRTPPDDAPLETTTSAIETDPAIDASDEFPTDFGSYTSYGSAHHGDGEDNDIGEWVHATPSLREHLHQELRSYRLSERDSLLAQTVIEALDDDGYLRQTLSELMPLAPVEPAPAEKEMQIALALVQSLDPPGVAARDLAECLRLQIEARPADTEAEERVQEIALDIVRSHLPRLAKRDLTHIRRAVGCEEDELREACALIRTLDPRPGLRFSQAHAGYIVPDVIVAKIKGKWVAVTNPAVAPCARINKVYAELFAQTRGHHRTPLAHQLQEARWLIRNAQQRFATIQRVAEAIVAHQKHFLEYGEVAMRPLVLRDVAEELGLHESTISRATGNKFMATPRGIFEFKYFFSRQLATDTGGACSAASVRALLKEMIEAEDAQAPLSDVSLAKMLAEQGVIVARRTVAKYRGLMRIASAELRRQV
>CP022760.1|AXV84812.1|1974447_1974822_-|hypothetical-protein
MQPPRTLTAALLGIALAFGMTVALAQTNMAPTDSQASGSPTKTPGKRTDPPSSTADGTANTPMAGAETSGASGDMKPHTKKKHRHKKPTDATTGGMSHPGGQSGGNDADTSTGNSPPGSAKPVQ
>CP022760.1|AXV84664.1|1973002_1974145_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MSLSEAFADDRAVTTGRLPCPPALAGRADPDVIAAFDDAARPVAFATPPAVSAPAVADPDFGHLYGCSAVMRTLYDQIRKVSGTLATVLIIGESGTGKELIARTVHDMSPRADQAFIGVNCGAISPNLIESELFGHEKGSFTGAGQRHTGYFEHACNGTIFLDEITEMPVEMQVKLLRVLETGTFMRVGGTEPIQTRARIVAATNRNLPEAVADGTFREDLMYRLAVVPLHVPPLRDRGEDIEELAQHFLAQFNAAHQTDKTFARAALSALRQHPWPGNVRELRNAVQRGYILGEKTVELAMPLASLRSPARPSVKEGMLNVSVGVTLAEAQRVMILATLEHFQGDKRQAAKTLGVSLKTLYNRLDLYHNQSTEAAGLPA
>CP022760.1|AXV84663.1|1971081_1972476_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MPHILIVEDDVSARAALGELVSAEGFTTAQAGSLRDARIQISRHSPDAVLIDLVLPDGNGMDLMEDIPSHSGTEIIVMTGHASVETAVEALRMGAADYLVKPVNFQRLKSILARIPRPGDLKAEIGNLRGELRRLGLFGQMLGNSPAMQTLYDQVSRVAPTEATVLLIGESGTGKELAAQTIHDLSLRRKQPFLPVNCGAISPNLIESEMFGHERGSFTGADRQHKGYFERANGGTLLLDEITEMPVELQVKLLRVLETGVFMRVGTNREIDTDVRVIAATNRDPEEAVADGKLRADLYHRLNVFPLQLPPLRERGKDVELLAQHFLDQLNAQNNSKKTFLPQAMDTLRAYNWPGNVRELRNYVQRAYIMADDTGISTEAVPLQISTTQASSGSTLTIPVGTSLASADKKIILATLEQCGGVKKRAAELLGISLKTLYNRLEEYGNGSNSNSEGENGKAQTTEA
>CP022760.1|AXV84662.1|1970825_1970993_-|DUF1328-domain-containing-protein
MLRYAVIFFIIALIAALFGFGGIAAGAASIAKILFMIFVVLFVVSLMWGLVAGRG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	684646-684679	0	1.0
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	587407-587440	0	1.0
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	646231-646264	0	1.0
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	586522-586555	0	1.0
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	585308-585341	0	1.0
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	585298-585331	0	1.0
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	587395-587428	0	1.0
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	587414-587447	0	1.0
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	587392-587425	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1986097-1986121	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	2082729-2082753	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1882148-1882172	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	2032659-2032683	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1881168-1881192	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1984006-1984030	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1984008-1984032	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1881492-1881516	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1881541-1881565	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1882128-1882152	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1986291-1986315	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1986289-1986313	0	1.0
CP022760_3	3.1\|1984010\|25\|CP022760\|PILER-CR	1984010-1984034	25	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1986253-1986277	0	1.0
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	692043-692076	1	0.971
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	692101-692134	1	0.971
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	692101-692134	1	0.971
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	692090-692123	1	0.971
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1282883-1282916	8	0.765
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	816277-816310	8	0.765
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1128235-1128268	8	0.765
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	636664-636697	8	0.765
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	656773-656806	9	0.735
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	661340-661373	9	0.735
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1530776-1530809	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1397899-1397932	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1460092-1460125	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1396921-1396954	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1441458-1441491	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1441449-1441482	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1397891-1397924	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1397244-1397277	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1397882-1397915	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1475431-1475464	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1475586-1475619	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1475567-1475600	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1475550-1475583	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1300403-1300436	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1286896-1286929	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	542504-542537	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	887904-887937	10	0.706
CP022760_2	2.1\|585308\|34\|CP022760\|CRISPRCasFinder	585308-585341	34	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	887882-887915	10	0.706
CP022760_1	1.1\|410042\|79\|CP022760\|CRISPRCasFinder	410042-410120	79	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	425798-425876	19	0.759
CP022760_1	1.1\|410042\|79\|CP022760\|CRISPRCasFinder	410042-410120	79	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	410042-410120	19	0.759
CP022760_1	1.1\|410042\|79\|CP022760\|CRISPRCasFinder	410042-410120	79	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	410032-410110	19	0.759
CP022760_1	1.1\|410042\|79\|CP022760\|CRISPRCasFinder	410042-410120	79	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	414611-414689	20	0.747
CP022760_1	1.1\|410042\|79\|CP022760\|CRISPRCasFinder	410042-410120	79	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	414611-414689	20	0.747
CP022760_1	1.1\|410042\|79\|CP022760\|CRISPRCasFinder	410042-410120	79	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	414623-414701	20	0.747
CP022760_1	1.1\|410042\|79\|CP022760\|CRISPRCasFinder	410042-410120	79	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	414644-414722	20	0.747
CP022760_1	1.1\|410042\|79\|CP022760\|CRISPRCasFinder	410042-410120	79	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	414610-414688	20	0.747

1. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacatcacgccgatggcaccgatggacac	Protospacer
**********************************

2. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacatcacgccgatggcaccgatggacac	Protospacer
**********************************

3. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacatcacgccgatggcaccgatggacac	Protospacer
**********************************

4. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacatcacgccgatggcaccgatggacac	Protospacer
**********************************

5. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacatcacgccgatggcaccgatggacac	Protospacer
**********************************

6. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacatcacgccgatggcaccgatggacac	Protospacer
**********************************

7. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacatcacgccgatggcaccgatggacac	Protospacer
**********************************

8. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacatcacgccgatggcaccgatggacac	Protospacer
**********************************

9. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacatcacgccgatggcaccgatggacac	Protospacer
**********************************

10. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

11. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

12. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

13. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

14. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

15. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

16. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

17. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

18. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

19. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

20. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

21. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

22. spacer 3.1|1984010|25|CP022760|PILER-CR matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgatttccgtgggccctctattcat	CRISPR spacer
cgatttccgtgggccctctattcat	Protospacer
*************************

23. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacattacgccgatggcaccgatggacac	Protospacer
**********.***********************

24. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacattacgccgatggcaccgatggacac	Protospacer
**********.***********************

25. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacattacgccgatggcaccgatggacac	Protospacer
**********.***********************

26. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgggcgacattacgccgatggcaccgatggacac	Protospacer
**********.***********************

27. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.765

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgctcaacagcacgccgatcgcaccgatggcgaa	Protospacer
**  *.*** ********* **********  *

28. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 8, identity: 0.765

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgctcaacagcacgccaatggcaccgatggcgaa	Protospacer
**  *.*** ******.*************  *

29. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.765

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgctcaacagcacgccgatcgcaccgatggcgaa	Protospacer
**  *.*** ********* **********  *

30. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 8, identity: 0.765

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgctcaacagcacgccaatggcaccgatggcgaa	Protospacer
**  *.*** ******.*************  *

31. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.735

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cgcgcgacatcacgccgatggcgccatccgatgt	Protospacer
** *******************.**. . **...

32. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 9, identity: 0.735

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
cactcaacagcacgccgatcgcaccgatggcgaa	Protospacer
*.  *.*** ********* **********  *

33. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

34. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

35. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

36. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

37. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

38. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

39. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

40. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

41. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

42. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

43. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

44. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

45. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

46. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

47. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

48. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

49. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

50. spacer 2.1|585308|34|CP022760|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgacatcacgccgatggcaccgatggacac	CRISPR spacer
tgacgaagctcgcgccgatggcaccgatggccag	Protospacer
.*.  .*  **.****************** **

51. spacer 1.1|410042|79|CP022760|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 19, identity: 0.759

aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	CRISPR spacer
aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	Protospacer
************************************************************

52. spacer 1.1|410042|79|CP022760|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 19, identity: 0.759

aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	CRISPR spacer
aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	Protospacer
************************************************************

53. spacer 1.1|410042|79|CP022760|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 19, identity: 0.759

aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	CRISPR spacer
aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	Protospacer
************************************************************

54. spacer 1.1|410042|79|CP022760|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 20, identity: 0.747

aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	CRISPR spacer
aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgtcgg	Protospacer
*********************************************************.**

55. spacer 1.1|410042|79|CP022760|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 20, identity: 0.747

aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	CRISPR spacer
aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgtcgg	Protospacer
*********************************************************.**

56. spacer 1.1|410042|79|CP022760|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 20, identity: 0.747

aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	CRISPR spacer
aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgtcgg	Protospacer
*********************************************************.**

57. spacer 1.1|410042|79|CP022760|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 20, identity: 0.747

aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	CRISPR spacer
aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgtcgg	Protospacer
*********************************************************.**

58. spacer 1.1|410042|79|CP022760|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 20, identity: 0.747

aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgttgg	CRISPR spacer
aggcgcgaaggccggcagcaagttcgatccgtacacggacggtgcgctcgcgcgcgtcgg	Protospacer
*********************************************************.**

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

811504 : 821635

Hokovirus(14.29%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXV80739.1\|811504_813466_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.9e-146	51.0
AXV80740.1\|813600_814743_+	molecular chaperone DnaJ	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	7.7e-23	32.7
AXV80741.1\|814778_816659_+	aminodeoxychorismate synthase component I	A0A0B5J984	Pandoravirus	9.7e-55	36.9
AXV80742.1\|816614_817301_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	7.7e-10	22.7
AXV80743.1\|817308_818016_-	ABC transporter permease	NA	NA	NA	NA
AXV80744.1\|818023_818845_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	5.4e-34	31.3
AXV80745.1\|818901_819546_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	8.3e-06	28.1
AXV80746.1\|819578_820088_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AXV80747.1\|820087_821635_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	34.1

DBSCAN-SWA_2

2585847 : 2594080

Bacillus_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXV82187.1\|2585847_2586897_-	methionine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.9e-25	33.0
AXV82188.1\|2587053_2587977_-	deacetylase	A0A2K9KZC4	Tupanvirus	1.4e-43	35.8
AXV82189.1\|2588094_2589207_+	lytic murein transglycosylase B	NA	NA	NA	NA
AXV82190.1\|2589287_2590190_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	4.8e-52	40.8
AXV82191.1\|2590293_2590611_-	competence protein ComE	NA	NA	NA	NA
AXV82192.1\|2590740_2591736_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	1.1e-28	32.7
AXV82193.1\|2591732_2592680_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	5.8e-16	27.3
AXV82194.1\|2592706_2594080_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-76	38.9

DBSCAN-SWA_3

2626113 : 2648446

Acidithiobacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXV82219.1\|2626113_2636400_-	hemagglutinin	A0A0R6PJK4	Moraxella_phage	6.1e-26	31.4
AXV82220.1\|2636786_2637734_+	HrgA protein	NA	NA	NA	NA
AXV82221.1\|2638185_2638524_+	hypothetical protein	NA	NA	NA	NA
AXV83177.1\|2638575_2638872_-	hypothetical protein	NA	NA	NA	NA
AXV82222.1\|2638939_2639404_-	glycoside hydrolase	K4I410	Acidithiobacillus_phage	9.6e-65	79.1
AXV82223.1\|2639400_2639883_-	hypothetical protein	A0A076YKQ7	Mycobacterium_phage	5.6e-23	50.0
AXV82224.1\|2639869_2640352_-	hypothetical protein	K4ICR8	Acidithiobacillus_phage	4.4e-60	72.3
AXV82225.1\|2640348_2640639_-	hypothetical protein	K4I011	Acidithiobacillus_phage	2.4e-13	47.6
AXV82226.1\|2640705_2640930_-	hypothetical protein	A0A088C533	Shewanella_sp._phage	4.1e-05	43.9
AXV82227.1\|2640939_2642784_-	hypothetical protein	A0A0M4UKC5	Ralstonia_phage	2.6e-105	45.9
AXV82228.1\|2642788_2643187_-	hypothetical protein	NA	NA	NA	NA
AXV82229.1\|2643183_2643666_-	hypothetical protein	A0A0M4TU90	Ralstonia_phage	1.2e-12	42.7
AXV82230.1\|2643669_2644836_-	hypothetical protein	NA	NA	NA	NA
AXV82231.1\|2644858_2648446_-	hypothetical protein	A0A0M4U447	Ralstonia_phage	0.0e+00	53.9

DBSCAN-SWA_4

2656551 : 2694915

Acidithiobacillus_phage(35.0%)

capsid,portal,transposase,head,terminase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXV82239.1\|2656551_2657325_-	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	1.5e-49	45.5
AXV82240.1\|2657447_2657894_-	hypothetical protein	NA	NA	NA	NA
AXV82241.1\|2657899_2658202_-	hypothetical protein	NA	NA	NA	NA
AXV82242.1\|2658204_2659209_-\|capsid	major capsid protein E	A0A1B2LRS0	Wolbachia_phage	1.8e-108	65.7
AXV82243.1\|2659215_2659593_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	4.6e-25	50.4
AXV82244.1\|2659602_2660853_-\|protease	Clp protease ClpP	K4HZZ6	Acidithiobacillus_phage	9.3e-62	41.8
AXV83178.1\|2660862_2662383_-\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	3.2e-149	56.8
AXV82245.1\|2662409_2662631_-	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	1.7e-11	57.5
AXV82246.1\|2662631_2663024_-	hypothetical protein	NA	NA	NA	NA
AXV82247.1\|2663034_2663544_-	hypothetical protein	A0A0F6WCR7	Sinorhizobium_phage	6.3e-25	45.0
AXV83179.1\|2663587_2665567_-\|terminase	terminase	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	86.0
AXV82248.1\|2665569_2666106_-	elements of external origin	A0A2H4JCL4	uncultured_Caudovirales_phage	1.7e-68	77.0
AXV82249.1\|2666199_2666472_+	hypothetical protein	NA	NA	NA	NA
AXV82250.1\|2666561_2667056_+	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	6.3e-22	57.3
AXV82251.1\|2667177_2667366_+	hypothetical protein	K4HZY7	Acidithiobacillus_phage	5.9e-13	64.2
AXV82252.1\|2667590_2667956_+	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	5.5e-31	57.1
AXV82253.1\|2668058_2668304_+	hypothetical protein	NA	NA	NA	NA
AXV82254.1\|2668263_2669499_-	DNA methylase N-4	A0A2H4JGF1	uncultured_Caudovirales_phage	5.5e-192	81.0
AXV82255.1\|2669495_2670899_-	DNA modification methylase	K4I3Y2	Acidithiobacillus_phage	1.8e-162	60.7
AXV82256.1\|2671296_2671704_-	hypothetical protein	NA	NA	NA	NA
AXV82257.1\|2671693_2671906_-	hypothetical protein	NA	NA	NA	NA
AXV82258.1\|2672137_2674435_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	5.9e-296	65.5
AXV82259.1\|2674418_2674808_-	hypothetical protein	NA	NA	NA	NA
AXV82260.1\|2674813_2675218_-	hypothetical protein	K4I3X7	Acidithiobacillus_phage	8.2e-28	50.4
AXV82261.1\|2675290_2675923_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	3.8e-64	61.5
AXV82262.1\|2675940_2676813_-	hypothetical protein	K4HZX9	Acidithiobacillus_phage	5.1e-99	64.3
AXV82263.1\|2676809_2677307_-	hypothetical protein	NA	NA	NA	NA
AXV82264.1\|2677303_2677594_-	hypothetical protein	NA	NA	NA	NA
AXV83180.1\|2677509_2677743_+	hypothetical protein	NA	NA	NA	NA
AXV83181.1\|2678079_2678970_-	hypothetical protein	NA	NA	NA	NA
AXV83182.1\|2679014_2680175_-	hypothetical protein	NA	NA	NA	NA
AXV83183.1\|2680247_2680718_+	MarR family transcriptional regulator	NA	NA	NA	NA
AXV82265.1\|2680698_2681235_+	cytochrome b	NA	NA	NA	NA
AXV82266.1\|2681234_2681831_+	hypothetical protein	NA	NA	NA	NA
AXV82267.1\|2681926_2683120_+	MFS transporter	NA	NA	NA	NA
AXV82268.1\|2683514_2684489_-	hypothetical protein	NA	NA	NA	NA
AXV83184.1\|2684485_2685706_-	glycine hydroxymethyltransferase	NA	NA	NA	NA
AXV82269.1\|2686161_2686578_-	hypothetical protein	A0A1P8DJD6	Virus_Rctr71	4.6e-18	40.8
AXV82270.1\|2686640_2686994_-	hypothetical protein	NA	NA	NA	NA
AXV83185.1\|2687835_2688213_-	hypothetical protein	NA	NA	NA	NA
AXV82271.1\|2688610_2689999_-	hypothetical protein	NA	NA	NA	NA
AXV83186.1\|2690070_2690355_-	hypothetical protein	NA	NA	NA	NA
AXV82272.1\|2690706_2691798_+	hypothetical protein	NA	NA	NA	NA
AXV83187.1\|2692184_2692298_-	elements of external origin	NA	NA	NA	NA
AXV82273.1\|2692572_2692869_-	hypothetical protein	NA	NA	NA	NA
AXV82274.1\|2693774_2694915_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.3e-50	42.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP022760

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP022759

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection