CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP023438	Salmonella enterica strain FORC_074 plasmid pFORC74_3, complete sequence	0 crisprs	NA	0	0
CP023436	Salmonella enterica strain FORC_074 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	13	9
CP023437	Salmonella enterica strain FORC_074 plasmid pFORC74_2, complete sequence	0 crisprs	cas14j	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023436_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023436_1

940940-941579

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAAC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRT

10 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of CP023436_1

>merge|CP023436|1|940940-941579|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACTGAGGATTTCGCCGCGCTGTTGGCCTCCAGATTCGTGTTCCCCGCGCCAGCGGGGATAAACTGCCGTGCCTGTCCAGGACAAATTGCCGATTATTGTGTTCCCCGCGCCAGCGGGGATAAACTGCTGCCGGTCTGTGCTGTTGTCGTCAATAATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATGTGACAGTCTGATTTTTATAGCGCATGAGTGTTCCCCGCGCCAGCGGGGATAAACCCAATTTAGGGGCCGGAACTCCGGGAAAGGCAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAACACCAAGCTCTTCCGCCGCGCGTTCCTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCTCTCATTAAAGGGGTTTCCATGTTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTCGCAGCCTGGCCTGTTGCCGTAGAATCGGTGTTCCCCTCGCCAGCGGGGATAAACCGAGTTACTGATGCAGACTGCGGATCTTAATCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCGCCAACGACTGGAATTTTTGCGTGTAGCCGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP023436|1|1|940940-941516|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGAGGATTTCGCCGCGCTGTTGGCCTCCAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCTGCCGGTCTGTGCTGTTGTCGTCAATAATCA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGCATGTGACAGTCTGATTTTTATAGCGCATGA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CCAATTTAGGGGCCGGAACTCCGGGAAAGGCAGC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCAAACACCAAGCTCTTCCGCCGCGCGTTCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTTGCTCTCATTAAAGGGGTTTCCATGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG
GTGTTCCCCTCGCCAGCGGGGATAAAC	CGAGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAAC

>CP023436|1|1|940940-941579|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACTG	AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATGTGACAGTCTGATTTTTATAGCGCATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCC	AATTTAGGGGCCGGAACTCCGGGAAAGGCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACACCAAGCTCTTCCGCCGCGCGTTCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCTCTCATTAAAGGGGTTTCCATGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG
GTGTTCCCCTCGCCAGCGGGGATAAACCG	AGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP023436|1|1|940940-941577|CRT
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGAGGATTTCGCCGCGCTGTTGGCCTCCAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCTGCCGGTCTGTGCTGTTGTCGTCAATAATCA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGCATGTGACAGTCTGATTTTTATAGCGCATGA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CCAATTTAGGGGCCGGAACTCCGGGAAAGGCAGC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCAAACACCAAGCTCTTCCGCCGCGCGTTCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTTGCTCTCATTAAAGGGGTTTCCATGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG
GTGTTCCCCTCGCCAGCGGGGATAAAC	CGAGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP023436.1\|AXX35290.1\|942562_942925_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP023436.1\|AXX35296.1\|949291_951844_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP023436.1\|AXX35281.1\|931030_931804_-\|Periplasmic-fimbrial-chaperone	unknown	unknown	gnl\|CDD\|185177
CP023436.1\|AXX35278.1\|929486_930023_-\|Fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
CP023436.1\|AXX35289.1\|941677_942475_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP023436.1\|AXX35285.1\|936817_938455_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
CP023436.1\|AXX35297.1\|951855_953412_+\|CRISPR-associated-protein-Cse1-family	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP023436.1\|AXX35293.1\|945147_946860_+\|Sulfite-reductase-(NADPH)-hemoprotein-beta-component	unknown	unknown	gnl\|CDD\|237402
CP023436.1\|AXX35295.1\|947783_948866_-\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP023436.1\|AXX35286.1\|938537_939836_+\|Enolase	unknown	unknown	gnl\|CDD\|234617
CP023436.1\|AXX35292.1\|943348_945148_+\|Sulfite-reductase-(NADPH)-flavoprotein-alpha-component	unknown	unknown	gnl\|CDD\|182862
CP023436.1\|AXX35287.1\|939971_940643_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
CP023436.1\|AXX35283.1\|934595_935183_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185169
CP023436.1\|AXX35280.1\|930504_931011_-\|Fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP023436.1\|AXX35284.1\|935828_936590_+\|Nucleoside-triphosphate-pyrophosphohydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
CP023436.1\|AXX35282.1\|931816_934462_-\|Fimbriae-usher-protein-StfC	unknown	unknown	gnl\|CDD\|185176
CP023436.1\|AXX35298.1\|953408_953963_+\|CRISPR-associated-protein-Cse2-family	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP023436.1\|AXX35294.1\|946961_947696_+\|Phosphoadenylyl-sulfate-reductase-(thioredoxin)	unknown	unknown	gnl\|CDD\|234997
CP023436.1\|AXX35279.1\|930019_930490_-\|Fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP023436.1\|AXX35291.1\|942868_943024_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP023436.1\|AXX35290.1\|942562_942925_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP023436.1\|AXX35296.1\|949291_951844_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP023436.1\|AXX35281.1\|931030_931804_-\|Periplasmic-fimbrial-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
CP023436.1\|AXX35278.1\|929486_930023_-\|Fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	7.785e-121
CP023436.1\|AXX35289.1\|941677_942475_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00381e-102
CP023436.1\|AXX35285.1\|936817_938455_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP023436.1\|AXX35297.1\|951855_953412_+\|CRISPR-associated-protein-Cse1-family	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP023436.1\|AXX35293.1\|945147_946860_+\|Sulfite-reductase-(NADPH)-hemoprotein-beta-component	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP023436.1\|AXX35295.1\|947783_948866_-\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP023436.1\|AXX35286.1\|938537_939836_+\|Enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP023436.1\|AXX35292.1\|943348_945148_+\|Sulfite-reductase-(NADPH)-flavoprotein-alpha-component	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP023436.1\|AXX35287.1\|939971_940643_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP023436.1\|AXX35283.1\|934595_935183_-\|hypothetical-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP023436.1\|AXX35280.1\|930504_931011_-\|Fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
CP023436.1\|AXX35284.1\|935828_936590_+\|Nucleoside-triphosphate-pyrophosphohydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.36496e-152
CP023436.1\|AXX35282.1\|931816_934462_-\|Fimbriae-usher-protein-StfC	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP023436.1\|AXX35298.1\|953408_953963_+\|CRISPR-associated-protein-Cse2-family	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
CP023436.1\|AXX35279.1\|930019_930490_-\|Fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.10162e-98
CP023436.1\|AXX35294.1\|946961_947696_+\|Phosphoadenylyl-sulfate-reductase-(thioredoxin)	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139

>CP023436.1|AXX35287.1|939971_940643_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP023436.1|AXX35286.1|938537_939836_+|Enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP023436.1|AXX35285.1|936817_938455_+|CTP-synthase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP023436.1|AXX35284.1|935828_936590_+|Nucleoside-triphosphate-pyrophosphohydrolase-MazG
MQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP023436.1|AXX35283.1|934595_935183_-|hypothetical-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP023436.1|AXX35282.1|931816_934462_-|Fimbriae-usher-protein-StfC
MLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP023436.1|AXX35281.1|931030_931804_-|Periplasmic-fimbrial-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP023436.1|AXX35280.1|930504_931011_-|Fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP023436.1|AXX35279.1|930019_930490_-|Fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGEMLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP023436.1|AXX35278.1|929486_930023_-|Fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>CP023436.1|AXX35289.1|941677_942475_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP023436.1|AXX35290.1|942562_942925_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP023436.1|AXX35291.1|942868_943024_+|hypothetical-protein
MRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP023436.1|AXX35292.1|943348_945148_+|Sulfite-reductase-(NADPH)-flavoprotein-alpha-component
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGVVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWCWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP023436.1|AXX35293.1|945147_946860_+|Sulfite-reductase-(NADPH)-hemoprotein-beta-component
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVAITDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP023436.1|AXX35294.1|946961_947696_+|Phosphoadenylyl-sulfate-reductase-(thioredoxin)
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP023436.1|AXX35295.1|947783_948866_-|pathogenicity-island-1-effector-protein-SopD
MCCINNVVQILSCSKLYLFNKKERIERYILLRILNNINLKENIMPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP023436.1|AXX35296.1|949291_951844_+|CRISPR-associated-helicase-Cas3
MVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP023436.1|AXX35297.1|951855_953412_+|CRISPR-associated-protein-Cse1-family
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP023436.1|AXX35298.1|953408_953963_+|CRISPR-associated-protein-Cse2-family
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD

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Crispr_ID: CP023436_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023436_2

957731-958247

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAAC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

8 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP023436_2

>merge|CP023436|2|957731-958247|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGACGTTGGCTGAAAACGGTTTTTCGGTCCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATATGGCGCTCACGCGCATGAGCATTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGGCAAATTCATCCGCCGCTGACCACTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGCTTACATCTCACCGAGAGATTTTGAGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAACTGGTTTAGCTATCGCTGCCGGGGCTATGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTGCTCAGATTGGGAATTTGACCAGCGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCACGAGGGCCCCCTTATTGGGTCGGGCAGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTGGGTTGCATAGATGACACGCTTATAAATAGTGTTCCCCGCGTCAGCGGGGATAAACAC

>CP023436|2|2|957731-958245|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGAATATATGGCGCTCACGCGCATGAGCATTCTC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCAGGGCAAATTCATCCGCCGCTGACCACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGACGCTTACATCTCACCGAGAGATTTTGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGGAACTGGTTTAGCTATCGCTGCCGGGGCTAT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGATTGCTCAGATTGGGAATTTGACCAGCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTCACGAGGGCCCCCTTATTGGGTCGGGCAGGT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAAC

>CP023436|2|2|957731-958247|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATGGCGCTCACGCGCATGAGCATTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGGCAAATTCATCCGCCGCTGACCACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTACATCTCACCGAGAGATTTTGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGCTCAGATTGGGAATTTGACCAGCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>CP023436|2|2|957731-958247|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATGGCGCTCACGCGCATGAGCATTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGGCAAATTCATCCGCCGCTGACCACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTACATCTCACCGAGAGATTTTGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGCTCAGATTGGGAATTTGACCAGCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP023436.1\|AXX35313.1\|965618_966380_+\|5-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP023436.1\|AXX35296.1\|949291_951844_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP023436.1\|AXX35310.1\|963402_964113_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP023436.1\|AXX35294.1\|946961_947696_+\|Phosphoadenylyl-sulfate-reductase-(thioredoxin)	unknown	unknown	gnl\|CDD\|234997
CP023436.1\|AXX35305.1\|959558_960467_+\|Sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP023436.1\|AXX35302.1\|956420_957341_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP023436.1\|AXX35297.1\|951855_953412_+\|CRISPR-associated-protein-Cse1-family	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP023436.1\|AXX35309.1\|963072_963384_+\|Cell-division-protein-DivIC(FtsB)-stabilizes-FtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
CP023436.1\|AXX35303.1\|957340_957634_+\|CRISPR-associated-protein-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP023436.1\|AXX35298.1\|953408_953963_+\|CRISPR-associated-protein-Cse2-family	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP023436.1\|AXX35312.1\|964588_965638_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
CP023436.1\|AXX35299.1\|953976_955035_+\|CRISPR-associated-protein-Cse4-family	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP023436.1\|AXX35307.1\|961902_962508_+\|Adenylylsulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP023436.1\|AXX35295.1\|947783_948866_-\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP023436.1\|AXX35300.1\|955045_955792_+\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP023436.1\|AXX35311.1\|964112_964592_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP023436.1\|AXX35306.1\|960476_961916_+\|Sulfate-adenylyltransferase-subunit-1	unknown	unknown	gnl\|CDD\|235349
CP023436.1\|AXX35308.1\|962603_962882_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP023436.1\|AXX35304.1\|958261_959308_-\|Alkaline-phosphatase-isozyme-conversion-protein-precursor	unknown	unknown	gnl\|CDD\|182299
CP023436.1\|AXX35301.1\|955773_956424_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869

Protein	Function_ID	Function_description	E-value
CP023436.1\|AXX35313.1\|965618_966380_+\|5-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP023436.1\|AXX35296.1\|949291_951844_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP023436.1\|AXX35310.1\|963402_964113_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
CP023436.1\|AXX35294.1\|946961_947696_+\|Phosphoadenylyl-sulfate-reductase-(thioredoxin)	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
CP023436.1\|AXX35305.1\|959558_960467_+\|Sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP023436.1\|AXX35302.1\|956420_957341_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.63116e-157
CP023436.1\|AXX35297.1\|951855_953412_+\|CRISPR-associated-protein-Cse1-family	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP023436.1\|AXX35309.1\|963072_963384_+\|Cell-division-protein-DivIC(FtsB)-stabilizes-FtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP023436.1\|AXX35303.1\|957340_957634_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP023436.1\|AXX35298.1\|953408_953963_+\|CRISPR-associated-protein-Cse2-family	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
CP023436.1\|AXX35312.1\|964588_965638_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP023436.1\|AXX35299.1\|953976_955035_+\|CRISPR-associated-protein-Cse4-family	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
CP023436.1\|AXX35307.1\|961902_962508_+\|Adenylylsulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP023436.1\|AXX35295.1\|947783_948866_-\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP023436.1\|AXX35300.1\|955045_955792_+\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
CP023436.1\|AXX35311.1\|964112_964592_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
CP023436.1\|AXX35306.1\|960476_961916_+\|Sulfate-adenylyltransferase-subunit-1	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP023436.1\|AXX35308.1\|962603_962882_+\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	8.22763e-39
CP023436.1\|AXX35304.1\|958261_959308_-\|Alkaline-phosphatase-isozyme-conversion-protein-precursor	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP023436.1\|AXX35301.1\|955773_956424_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75

>CP023436.1|AXX35303.1|957340_957634_+|CRISPR-associated-protein-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP023436.1|AXX35302.1|956420_957341_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP023436.1|AXX35301.1|955773_956424_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>CP023436.1|AXX35300.1|955045_955792_+|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP023436.1|AXX35299.1|953976_955035_+|CRISPR-associated-protein-Cse4-family
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>CP023436.1|AXX35298.1|953408_953963_+|CRISPR-associated-protein-Cse2-family
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>CP023436.1|AXX35297.1|951855_953412_+|CRISPR-associated-protein-Cse1-family
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP023436.1|AXX35296.1|949291_951844_+|CRISPR-associated-helicase-Cas3
MVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP023436.1|AXX35295.1|947783_948866_-|pathogenicity-island-1-effector-protein-SopD
MCCINNVVQILSCSKLYLFNKKERIERYILLRILNNINLKENIMPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP023436.1|AXX35294.1|946961_947696_+|Phosphoadenylyl-sulfate-reductase-(thioredoxin)
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP023436.1|AXX35304.1|958261_959308_-|Alkaline-phosphatase-isozyme-conversion-protein-precursor
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP023436.1|AXX35305.1|959558_960467_+|Sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP023436.1|AXX35306.1|960476_961916_+|Sulfate-adenylyltransferase-subunit-1
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP023436.1|AXX35307.1|961902_962508_+|Adenylylsulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP023436.1|AXX35308.1|962603_962882_+|hypothetical-protein
MVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP023436.1|AXX35309.1|963072_963384_+|Cell-division-protein-DivIC(FtsB)-stabilizes-FtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP023436.1|AXX35310.1|963402_964113_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP023436.1|AXX35311.1|964112_964592_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP023436.1|AXX35312.1|964588_965638_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP023436.1|AXX35313.1|965618_966380_+|5-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP023436_1	1.15\|941274\|33\|CP023436\|CRISPRCasFinder	941274-941306	33	NZ_CP032236	Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence	63403-63435	4	0.879
CP023436_1	1.15\|941274\|33\|CP023436\|CRISPRCasFinder	941274-941306	33	NZ_LN681230	Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence	91355-91387	4	0.879
CP023436_1	1.5\|941211\|34\|CP023436\|PILER-CR,CRT	941211-941244	34	NZ_CP044178	Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-1	18967-19000	5	0.853
CP023436_1	1.5\|941211\|34\|CP023436\|PILER-CR,CRT	941211-941244	34	CP053324	Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence	25136-25169	5	0.853
CP023436_1	1.6\|941272\|35\|CP023436\|PILER-CR,CRT	941272-941306	35	NZ_CP032236	Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence	63403-63437	5	0.857
CP023436_1	1.6\|941272\|35\|CP023436\|PILER-CR,CRT	941272-941306	35	NZ_LN681230	Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence	91353-91387	5	0.857
CP023436_1	1.5\|941211\|34\|CP023436\|PILER-CR,CRT	941211-941244	34	NZ_LN890526	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence	31716-31749	6	0.824
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP044178	Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-1	18969-19000	6	0.812
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	CP053324	Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence	25138-25169	6	0.812
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_LN890526	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence	31718-31749	7	0.781
CP023436_1	1.8\|941395\|34\|CP023436\|PILER-CR,CRT	941395-941428	34	MN694003	Marine virus AFVG_250M677, complete genome	17627-17660	8	0.765
CP023436_1	1.12\|941091\|32\|CP023436\|CRISPRCasFinder	941091-941122	32	MG592432	Vibrio phage 1.050.O._10N.286.48.A6, partial genome	21687-21718	8	0.75
CP023436_1	1.12\|941091\|32\|CP023436\|CRISPRCasFinder	941091-941122	32	MG592431	Vibrio phage 1.049.O._10N.286.54.B5, partial genome	21426-21457	8	0.75
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	329022-329053	8	0.75
CP023436_1	1.17\|941397\|32\|CP023436\|CRISPRCasFinder	941397-941428	32	MN694003	Marine virus AFVG_250M677, complete genome	17629-17660	8	0.75
CP023436_1	1.10\|940969\|32\|CP023436\|CRISPRCasFinder	940969-941000	32	CP006879	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence	405613-405644	9	0.719
CP023436_1	1.12\|941091\|32\|CP023436\|CRISPRCasFinder	941091-941122	32	NC_047790	Pseudoalteromonas phage C5a, complete genome	34441-34472	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP048340	Escherichia coli strain 142 plasmid p142_C, complete sequence	2410-2441	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_LR130559	Escherichia coli strain MS14385 isolate MS14385 plasmid 5	41882-41913	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP020518	Escherichia coli strain 222 plasmid unnamed2, complete sequence	13450-13481	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP020497	Escherichia coli strain 103 plasmid unnamed2, complete sequence	37140-37171	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP040921	Escherichia coli strain FC853_EC plasmid p853EC2, complete sequence	32060-32091	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	CP053252	Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence	19381-19412	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP042622	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-7, complete sequence	2614-2645	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_LT985302	Escherichia coli strain ECOR 39 genome assembly, plasmid: RCS82_pI	11943-11974	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP028194	Escherichia coli strain CFSAN018748 plasmid pGMI14-004_3, complete sequence	15383-15414	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP024865	Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence	22646-22677	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	AP019710	Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome	4361-4392	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP024829	Escherichia coli strain CREC-544 plasmid pCREC-544_3, complete sequence	2221-2252	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP009861	Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence	2868-2899	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	CP025877	Escherichia coli strain 503458 plasmid p503458_49, complete sequence	18343-18374	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP023368	Escherichia coli strain 1428 plasmid p48, complete sequence	4914-4945	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP032259	Escherichia coli strain AR_0067 plasmid unnamed2, complete sequence	23402-23433	9	0.719
CP023436_1	1.14\|941213\|32\|CP023436\|CRISPRCasFinder	941213-941244	32	NZ_CP037450	Escherichia coli strain ATCC 25922 plasmid unnamed, complete sequence	15851-15882	9	0.719
CP023436_1	1.15\|941274\|33\|CP023436\|CRISPRCasFinder	941274-941306	33	NZ_CP031947	Ruegeria sp. AD91A plasmid unnamed1, complete sequence	143751-143783	9	0.727
CP023436_2	2.2\|957819\|34\|CP023436\|PILER-CR	957819-957852	34	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41416-41449	9	0.735
CP023436_2	2.10\|957821\|32\|CP023436\|CRISPRCasFinder,CRT	957821-957852	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
CP023436_2	2.14\|958065\|32\|CP023436\|CRISPRCasFinder,CRT	958065-958096	32	MK449011	Streptococcus phage Javan92, complete genome	36157-36188	9	0.719
CP023436_2	2.14\|958065\|32\|CP023436\|CRISPRCasFinder,CRT	958065-958096	32	MK448835	Streptococcus phage Javan93, complete genome	36157-36188	9	0.719
CP023436_2	2.14\|958065\|32\|CP023436\|CRISPRCasFinder,CRT	958065-958096	32	MK448836	Streptococcus phage Javan95, complete genome	37400-37431	9	0.719
CP023436_2	2.14\|958065\|32\|CP023436\|CRISPRCasFinder,CRT	958065-958096	32	MK448825	Streptococcus phage Javan639, complete genome	37400-37431	9	0.719
CP023436_2	2.16\|958187\|32\|CP023436\|CRISPRCasFinder,CRT	958187-958218	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
CP023436_1	1.10\|940969\|32\|CP023436\|CRISPRCasFinder	940969-941000	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	699963-699994	10	0.688
CP023436_1	1.16\|941336\|32\|CP023436\|CRISPRCasFinder	941336-941367	32	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	103231-103262	10	0.688
CP023436_1	1.6\|941272\|35\|CP023436\|PILER-CR,CRT	941272-941306	35	NZ_CP031947	Ruegeria sp. AD91A plasmid unnamed1, complete sequence	143751-143785	11	0.686

1. spacer 1.15|941274|33|CP023436|CRISPRCasFinder matches to NZ_CP032236 (Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence) position: , mismatch: 4, identity: 0.879

caaacaccaagctcttccgccgcgcgttcctga	CRISPR spacer
catttaccaagctcttccgctgcgcgttcctga	Protospacer
**  .***************.************

2. spacer 1.15|941274|33|CP023436|CRISPRCasFinder matches to NZ_LN681230 (Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence) position: , mismatch: 4, identity: 0.879

caaacaccaagctcttccgccgcgcgttcctga	CRISPR spacer
catttaccaagctcttccgctgcgcgttcctga	Protospacer
**  .***************.************

3. spacer 1.5|941211|34|CP023436|PILER-CR,CRT matches to NZ_CP044178 (Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-1) position: , mismatch: 5, identity: 0.853

ccaattt----aggggccggaactccgggaaaggcagc	CRISPR spacer
----tttgagaaggggccggaactccgggaaaggcacc	Protospacer
    ***    ************************* *

4. spacer 1.5|941211|34|CP023436|PILER-CR,CRT matches to CP053324 (Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.853

ccaattt----aggggccggaactccgggaaaggcagc	CRISPR spacer
----tttgagaaggggccggaactccgggaaaggcacc	Protospacer
    ***    ************************* *

5. spacer 1.6|941272|35|CP023436|PILER-CR,CRT matches to NZ_CP032236 (Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence) position: , mismatch: 5, identity: 0.857

cgcaaacaccaagctcttccgccgcgcgttcctga	CRISPR spacer
ggcatttaccaagctcttccgctgcgcgttcctga	Protospacer
 ***  .***************.************

6. spacer 1.6|941272|35|CP023436|PILER-CR,CRT matches to NZ_LN681230 (Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence) position: , mismatch: 5, identity: 0.857

cgcaaacaccaagctcttccgccgcgcgttcctga	CRISPR spacer
ggcatttaccaagctcttccgctgcgcgttcctga	Protospacer
 ***  .***************.************

7. spacer 1.5|941211|34|CP023436|PILER-CR,CRT matches to NZ_LN890526 (Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.824

ccaattt----aggggccggaactccgggaaaggcagc	CRISPR spacer
----tttgagaaggggccggaactccggaaaaggcacc	Protospacer
    ***    *****************.******* *

8. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP044178 (Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-1) position: , mismatch: 6, identity: 0.812

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccgggaaaggcacc	Protospacer
 .   ************************* *

9. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to CP053324 (Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccgggaaaggcacc	Protospacer
 .   ************************* *

10. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_LN890526 (Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.781

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggaaaaggcacc	Protospacer
 .   *****************.******* *

11. spacer 1.8|941395|34|CP023436|PILER-CR,CRT matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.765

cgcggtcgcagcctggcctgttgccgtagaatcg	CRISPR spacer
cgcgatcgcagcctgggctgttgccgtgctcgcc	Protospacer
****.*********** **********.    *

12. spacer 1.12|941091|32|CP023436|CRISPRCasFinder matches to MG592432 (Vibrio phage 1.050.O._10N.286.48.A6, partial genome) position: , mismatch: 8, identity: 0.75

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
aatctgctctgtgctgttgtagtcaattataa	Protospacer
   *.* ************* ****** ** *

13. spacer 1.12|941091|32|CP023436|CRISPRCasFinder matches to MG592431 (Vibrio phage 1.049.O._10N.286.54.B5, partial genome) position: , mismatch: 8, identity: 0.75

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
aatctgctctgtgctgttgtagtcaattataa	Protospacer
   *.* ************* ****** ** *

14. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP053022 (Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence) position: , mismatch: 8, identity: 0.75

---aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
gtcagtt---gggccggaaagccgggaaaggcata	Protospacer
   *.**   *********  ************

15. spacer 1.17|941397|32|CP023436|CRISPRCasFinder matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.75

cggtcgcagcctggcctgttgccgtagaatcg	CRISPR spacer
cgatcgcagcctgggctgttgccgtgctcgcc	Protospacer
**.*********** **********.    *

16. spacer 1.10|940969|32|CP023436|CRISPRCasFinder matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 9, identity: 0.719

aggatttcgccgcgctgttggcctccagattc	CRISPR spacer
cagggtcgaccgcgctgtcgccctccagattc	Protospacer
 .*. *. .*********.* ***********

17. spacer 1.12|941091|32|CP023436|CRISPRCasFinder matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 9, identity: 0.719

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
tttggtgtctgtgccgttttcgtcaataagct	Protospacer
.*    ********.*** ********** *

18. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP048340 (Escherichia coli strain 142 plasmid p142_C, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

19. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_LR130559 (Escherichia coli strain MS14385 isolate MS14385 plasmid 5) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

20. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP020518 (Escherichia coli strain 222 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

21. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP020497 (Escherichia coli strain 103 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

22. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP040921 (Escherichia coli strain FC853_EC plasmid p853EC2, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

23. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to CP053252 (Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

24. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP042622 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-7, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

25. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_LT985302 (Escherichia coli strain ECOR 39 genome assembly, plasmid: RCS82_pI) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

26. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP028194 (Escherichia coli strain CFSAN018748 plasmid pGMI14-004_3, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

27. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP024865 (Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

28. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to AP019710 (Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

29. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP024829 (Escherichia coli strain CREC-544 plasmid pCREC-544_3, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

30. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP009861 (Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

31. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to CP025877 (Escherichia coli strain 503458 plasmid p503458_49, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

32. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP023368 (Escherichia coli strain 1428 plasmid p48, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

33. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP032259 (Escherichia coli strain AR_0067 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

34. spacer 1.14|941213|32|CP023436|CRISPRCasFinder matches to NZ_CP037450 (Escherichia coli strain ATCC 25922 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

aatttaggggccggaactccgggaaaggcagc	CRISPR spacer
tgagaaggggccggaactccggtaaagggcac	Protospacer
 .   ***************** *****  .*

35. spacer 1.15|941274|33|CP023436|CRISPRCasFinder matches to NZ_CP031947 (Ruegeria sp. AD91A plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

caaacaccaagctcttccgccgcgcgttcctga	CRISPR spacer
gaaacaccaaggtcttccgccgcacgggcaaag	Protospacer
 ********** ***********.**  *  ..

36. spacer 2.2|957819|34|CP023436|PILER-CR matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.735

cgaatat-atggcgctcacgcgcatgagcattctc	CRISPR spacer
-gaacgcaatggcgctgacgcgcatgatcatttcg	Protospacer
 ***... ******** ********** ****..

37. spacer 2.10|957821|32|CP023436|CRISPRCasFinder,CRT matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

aatatatggcgctcacgcgcatgagcattctc	CRISPR spacer
acgcaatggcgctgacgcgcatgatcatttcg	Protospacer
*    ******** ********** ****..

38. spacer 2.14|958065|32|CP023436|CRISPRCasFinder,CRT matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 9, identity: 0.719

gattgctcagattgggaatttgaccagcggcc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
..*.****************** * **  *.

39. spacer 2.14|958065|32|CP023436|CRISPRCasFinder,CRT matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 9, identity: 0.719

gattgctcagattgggaatttgaccagcggcc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
..*.****************** * **  *.

40. spacer 2.14|958065|32|CP023436|CRISPRCasFinder,CRT matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 9, identity: 0.719

gattgctcagattgggaatttgaccagcggcc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
..*.****************** * **  *.

41. spacer 2.14|958065|32|CP023436|CRISPRCasFinder,CRT matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 9, identity: 0.719

gattgctcagattgggaatttgaccagcggcc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
..*.****************** * **  *.

42. spacer 2.16|958187|32|CP023436|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

gttgggttgcatagatgacacgcttataaata	CRISPR spacer
gaattatggcatagatgacatgattataaatt	Protospacer
*    .* ************.* ********

43. spacer 1.10|940969|32|CP023436|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

aggatttcgccgcgctgttggcctccagattc	CRISPR spacer
gggatatcgccgcgctgatggcctatgaccac	Protospacer
.**** *********** ****** ... . *

44. spacer 1.16|941336|32|CP023436|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

ttgctctcattaaaggggtttccatgtttgat	CRISPR spacer
gattcgtcattacagtggtttccatgttttag	Protospacer
   .. ****** ** ************* *

45. spacer 1.6|941272|35|CP023436|PILER-CR,CRT matches to NZ_CP031947 (Ruegeria sp. AD91A plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

cgcaaacaccaagctcttccgccgcgcgttcctga	CRISPR spacer
gagaaacaccaaggtcttccgccgcacgggcaaag	Protospacer
 . ********** ***********.**  *  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1658096 : 1667267

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX35934.1\|1658096_1659044_+	Osmoprotectant ABC transporter ATP-binding subunit YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
AXX35935.1\|1659027_1659759_+	osmoprotectant uptake system permease	NA	NA	NA	NA
AXX35936.1\|1659739_1659847_-	membrane protein	NA	NA	NA	NA
AXX35937.1\|1659906_1660638_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.5e-99	86.9
AXX35938.1\|1660860_1662546_+	Histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AXX35939.1\|1662542_1663262_+	Two-component response-regulatory protein YehT	NA	NA	NA	NA
AXX35940.1\|1663308_1663776_+	hypothetical protein	Q9EYF4	Enterobacteria_phage	4.3e-73	89.7
AXX35941.1\|1663832_1664363_-	hypothetical protein	NA	NA	NA	NA
AXX35942.1\|1664534_1664993_-	putative lipoprotein yehR	Q9EYF5	Enterobacteria_phage	6.4e-53	72.5
AXX35943.1\|1665233_1667267_-\|tRNA	Methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	6.1e-55	26.9

DBSCAN-SWA_2

1734465 : 1744972

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX35998.1\|1734465_1735869_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5
AXX35999.1\|1736046_1736940_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXX36000.1\|1737316_1738402_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AXX36001.1\|1738401_1739301_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
AXX36002.1\|1739342_1740227_+	Glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.1e-108	65.5
AXX36003.1\|1740230_1740779_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
AXX36004.1\|1740784_1741759_+	CDP-6-deoxy-delta-3,4-glucoseen reductase-like	NA	NA	NA	NA
AXX36005.1\|1741774_1742548_+	Glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AXX36006.1\|1742552_1743632_+	CDP-glucose 4,6-dehydratase-like protein	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
AXX36007.1\|1743658_1744972_+	CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_3

1857895 : 1905391

Salmonella_phage(77.78%)

transposase,portal,head,plate,capsid,holin,tail,integrase,terminase

attL 1860796:1860810|attR 1908986:1909000

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX36122.1\|1857895_1859170_-\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	2.4e-73	39.9
AXX36123.1\|1859833_1860124_-	hypothetical protein	H2BDA3	Pseudomonas_phage	1.2e-07	49.1
AXX36124.1\|1860495_1861293_-	hypothetical protein	NA	NA	NA	NA
1860796:1860810	attL	NA	NA	NA	NA
AXX36125.1\|1861584_1862574_-\|integrase	Phage integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
AXX36126.1\|1862575_1862803_-	hypothetical protein	Q8HAA9	Salmonella_phage	3.2e-37	100.0
AXX36127.1\|1862842_1863412_-	hypothetical protein	A0A192Y6E0	Salmonella_phage	9.3e-110	99.5
AXX36128.1\|1863408_1864272_-	Phage EaA protein	S4TSR6	Salmonella_phage	5.2e-64	49.2
AXX36129.1\|1864268_1864562_-	Phage protein	A0A1V0E5L2	Salmonella_phage	1.5e-50	100.0
AXX36130.1\|1864833_1865193_-	Phage EaF protein	T1SA95	Salmonella_phage	1.0e-58	89.9
AXX36131.1\|1865189_1865705_-	hypothetical protein	A0A2H4FWH2	Salmonella_phage	1.3e-94	96.5
AXX36132.1\|1865701_1865932_-	hypothetical protein	Q8HAA4	Salmonella_phage	2.0e-34	100.0
AXX36133.1\|1866002_1866542_-	yfdR	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AXX36134.1\|1866636_1867554_-	DNA recombination-dependent growth factor C	S4TWL4	Salmonella_phage	1.3e-97	59.7
AXX36135.1\|1868123_1868375_+	BssS family protein	NA	NA	NA	NA
AXX36136.1\|1868274_1868523_-	hypothetical protein	NA	NA	NA	NA
AXX36137.1\|1868450_1868636_-	hypothetical protein	A0A1C9II97	Salmonella_phage	1.2e-13	73.3
AXX36138.1\|1868841_1869537_-	transcriptional regulator	Q8HAA0	Salmonella_phage	2.7e-127	99.6
AXX36139.1\|1869634_1869859_+	Phage DNA-binding protein	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AXX36140.1\|1869887_1870442_+	hypothetical protein	A0A1C9II13	Salmonella_phage	3.4e-101	98.9
AXX36141.1\|1870609_1871596_+	phage immunity protein	Q8HA97	Salmonella_phage	8.6e-180	98.5
AXX36142.1\|1871592_1871817_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AXX36143.1\|1871813_1872788_+	hypothetical protein	A0A1C9IHW0	Salmonella_phage	1.2e-165	97.8
AXX36144.1\|1872784_1873258_+	hypothetical protein	A0A1C9IHW0	Salmonella_phage	3.9e-53	94.6
AXX36145.1\|1873254_1874136_+	Methyl-directed repair DNA adenine methylase	A0A1C9II58	Salmonella_phage	8.3e-166	96.2
AXX36146.1\|1874225_1874534_+	crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.4e-51	99.0
AXX36147.1\|1874550_1875411_+	Phage-related protein	A0A192Y6F8	Salmonella_phage	1.5e-159	98.3
AXX36148.1\|1875490_1876408_+	Phage antitermination protein Q	A0A1C9IHZ5	Salmonella_phage	4.9e-177	97.4
AXX36149.1\|1876421_1877174_+	Phage antitermination protein Q	A0A192Y5X6	Salmonella_phage	1.9e-134	92.0
AXX36150.1\|1877223_1878297_+	hypothetical protein	NA	NA	NA	NA
AXX36151.1\|1878309_1878882_+	hypothetical protein	NA	NA	NA	NA
AXX36152.1\|1878970_1879360_+	hypothetical protein	K7PHB9	Enterobacterial_phage	1.8e-40	71.0
AXX36153.1\|1879412_1879628_+	Putative prophage membrane protein	K7PKN9	Enterobacterial_phage	1.1e-26	81.7
AXX36154.1\|1879627_1880245_+	Lytic enzyme	Q8HA86	Salmonella_phage	3.2e-92	78.9
AXX36155.1\|1880241_1880781_+	hypothetical protein	A0A0A0P0G7	Enterobacteria_phage	5.3e-06	37.2
AXX36156.1\|1881026_1881155_+\|holin	Phage holin	M1FQV2	Enterobacteria_phage	7.0e-18	97.6
AXX36157.1\|1881301_1881739_+\|terminase	Phage terminase	A0A1J0GV10	Halomonas_phage	1.6e-32	63.7
AXX36158.1\|1881738_1883469_+\|terminase	Phage terminase large subunit	Q8W631	Enterobacteria_phage	3.2e-198	58.9
AXX36159.1\|1883465_1883624_+	hypothetical protein	NA	NA	NA	NA
AXX36160.1\|1883617_1884835_+\|portal	Phage portal protein	A0A1W6JP33	Morganella_phage	7.6e-194	79.4
AXX36161.1\|1884827_1885430_+	Membrane protein related to metalloendopeptidase	Q8SBH9	Shigella_phage	2.0e-99	91.5
AXX36162.1\|1885439_1886669_+\|capsid	Phage major capsid protein	Q8SBH8	Shigella_phage	1.8e-206	90.9
AXX36163.1\|1886748_1887072_+	hypothetical protein	Q8SBH7	Shigella_phage	2.6e-40	72.0
AXX36164.1\|1887068_1887473_+\|head,tail	head-tail adaptor protein	A0A192Y6C2	Salmonella_phage	1.5e-69	96.3
AXX36165.1\|1887444_1887957_+	hypothetical protein	Q8HAC8	Salmonella_phage	1.4e-85	93.5
AXX36166.1\|1887953_1888514_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	3.0e-105	99.5
AXX36167.1\|1888517_1888682_+	Mu-like prophage FluMu protein GP38	Q8HAC6	Salmonella_phage	1.0e-24	100.0
AXX36168.1\|1888671_1890168_+\|tail	Bacteriophage tail sheath protein	Q8HAC5	Salmonella_phage	3.0e-277	99.2
AXX36169.1\|1890167_1890524_+\|tail	Phage tail tube protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
AXX36170.1\|1890520_1890847_+\|tail	Phage tail protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
AXX36171.1\|1890931_1892860_+\|tail	Phage tail length tape-measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.5
AXX36172.1\|1892893_1894234_+\|tail	Phage tail/DNA circulation protein	A0A192Y5U9	Salmonella_phage	1.1e-249	99.1
AXX36173.1\|1894230_1895289_+\|tail	Prophage tail protein	A0A192Y7L7	Salmonella_phage	1.3e-202	100.0
AXX36174.1\|1895288_1895822_+\|plate	Prophage baseplate assembly protein V	Q8HAB9	Salmonella_phage	2.1e-95	99.4
AXX36175.1\|1895826_1896240_+	Bacteriophage protein GP46	Q8HAB8	Salmonella_phage	1.1e-75	100.0
AXX36176.1\|1896232_1897312_+	Phage FluMu protein gp47	A0A192Y6E4	Salmonella_phage	5.5e-204	99.4
AXX36177.1\|1897314_1897902_+\|tail	Prophage tail protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
AXX36178.1\|1897888_1899451_+\|tail	Phage tail fiber protein	Q8HAB4	Salmonella_phage	9.8e-287	99.8
AXX36179.1\|1899450_1900020_+\|tail	Phage tail fiber protein	Q8HAB3	Salmonella_phage	7.3e-107	100.0
AXX36180.1\|1900304_1901312_-	putative cytoplasmic protein	Q8HAB2	Salmonella_phage	7.9e-197	100.0
AXX36181.1\|1901524_1901746_+	hypothetical protein	Q8HAB1	Salmonella_phage	1.2e-36	100.0
AXX36182.1\|1903088_1903907_+	hypothetical protein	NA	NA	NA	NA
AXX36183.1\|1904368_1905391_+\|transposase	transposase	NA	NA	NA	NA
1908986:1909000	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2438394 : 2457066

Escherichia_phage(66.67%)

integrase,tRNA

attL 2440999:2441012|attR 2453898:2453911

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX36714.1\|2438394_2438829_+	Universal stress protein F	A0A1W6JNV4	Morganella_phage	9.4e-30	52.1
AXX36715.1\|2438878_2439217_-	Ethidium bromide-methyl viologen resistance protein EmrE	NA	NA	NA	NA
AXX36716.1\|2439856_2440039_-	hypothetical protein	NA	NA	NA	NA
AXX36717.1\|2440062_2440608_-	Secretion activator protein	A0A0U2S643	Escherichia_phage	2.3e-89	83.4
AXX36718.1\|2440604_2440886_-	putative prophage membrane protein	K7PKN9	Enterobacterial_phage	1.3e-16	49.4
AXX36719.1\|2440985_2441381_-	hypothetical protein	Q71TK7	Escherichia_phage	4.7e-44	88.9
2440999:2441012	attL	NA	NA	NA	NA
AXX36720.1\|2441990_2442164_+	hypothetical protein	NA	NA	NA	NA
AXX36721.1\|2443551_2444088_-	antiterminator	A0A0U2S606	Escherichia_phage	1.4e-70	70.9
AXX36722.1\|2444084_2444375_-	hypothetical protein	A0A0U2KD41	Escherichia_phage	3.3e-39	75.0
AXX36723.1\|2444374_2444974_-	putative bacteriophage protein	A0A0U2RT94	Escherichia_phage	5.5e-97	82.9
AXX36724.1\|2445036_2445207_-	hypothetical protein	A0A0U2I1S4	Escherichia_phage	8.5e-11	61.8
AXX36725.1\|2445497_2445653_-	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
AXX36726.1\|2446079_2447012_+	hypothetical protein	NA	NA	NA	NA
AXX36727.1\|2447008_2447563_+	hypothetical protein	NA	NA	NA	NA
AXX36728.1\|2447724_2448015_-	hypothetical protein	A0A0U2QQN3	Escherichia_phage	1.8e-21	52.8
AXX36729.1\|2448326_2448794_+	transcriptional regulator	A0A0U2QW76	Escherichia_phage	1.0e-53	66.9
AXX36730.1\|2449169_2449334_+	hypothetical protein	M4QQ57	Salicola_phage	6.1e-06	46.8
AXX36731.1\|2449441_2449963_-	hypothetical protein	NA	NA	NA	NA
AXX36732.1\|2450400_2450622_+	Kil protein	A0A0U2RTC4	Escherichia_phage	7.9e-33	83.6
AXX36733.1\|2450706_2451024_+	hypothetical protein	NA	NA	NA	NA
AXX36734.1\|2451051_2451669_+	hypothetical protein	A0A088CD28	Shigella_phage	2.5e-36	41.9
AXX36735.1\|2451661_2451934_+\|integrase	Phage integrase	A0A0U2JGI6	Escherichia_phage	6.5e-45	100.0
AXX36736.1\|2451985_2452921_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	7.2e-144	97.3
AXX36737.1\|2452964_2454338_-	ATP-dependent 23S rRNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	32.0
2453898:2453911	attR	NA	NA	NA	NA
AXX36738.1\|2454824_2455808_-	Zinc transport protein ZntB	NA	NA	NA	NA
AXX36739.1\|2455953_2457066_-	chemoreceptor protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-10	27.7

DBSCAN-SWA_5

2623330 : 2690152

Enterobacteria_phage(29.41%)

protease,tRNA,holin,tail,integrase,terminase

attL 2674342:2674366|attR 2693953:2693977

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX36903.1\|2623330_2624026_-\|tRNA	TsaB protein required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	NA	NA	NA	NA
AXX36904.1\|2624083_2625994_-	DinG family ATP-dependent helicase YoaA	A0A127AW80	Bacillus_phage	4.5e-92	32.7
AXX36905.1\|2626124_2626469_+	YoaB-like protein	NA	NA	NA	NA
AXX36906.1\|2626474_2626654_-	hypothetical protein	NA	NA	NA	NA
AXX36907.1\|2626734_2628099_+	Para-aminobenzoate synthase aminase component	A0A0B5J984	Pandoravirus	3.6e-43	34.5
AXX36908.1\|2628102_2628681_+	putative nudix hydrolase YeaB	NA	NA	NA	NA
AXX36909.1\|2628962_2630309_+	L-serine ammonia-lyase	NA	NA	NA	NA
AXX36910.1\|2630446_2632048_+	c-di-GMP phosphodiesterase	NA	NA	NA	NA
AXX36911.1\|2632069_2633629_-	Magnesium and cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	9.5e-40	44.4
AXX36912.1\|2634101_2635070_+	PTS system mannose-specific IIAB component	NA	NA	NA	NA
AXX36913.1\|2635122_2635923_+	PTS system mannose-specific IIC component	NA	NA	NA	NA
AXX36914.1\|2635935_2636787_+	PTS system mannose-specific IID component	NA	NA	NA	NA
AXX36915.1\|2636845_2637304_+	hypothetical protein	NA	NA	NA	NA
AXX36916.1\|2637659_2638280_+	manganese efflux pump MntP	NA	NA	NA	NA
AXX36917.1\|2638276_2639086_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
AXX36918.1\|2639151_2640897_-	Cell division protein FtsI (Peptidoglycan synthetase)	NA	NA	NA	NA
AXX36919.1\|2641116_2641326_-	Cold shock protein CspC	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
AXX36920.1\|2642130_2642364_-	hypothetical protein	NA	NA	NA	NA
AXX36921.1\|2642789_2643029_+	putative exported protein	NA	NA	NA	NA
AXX36922.1\|2643240_2644032_-	Transcriptional regulator KdgR	NA	NA	NA	NA
AXX36923.1\|2644207_2645581_+	Putative transport protein	NA	NA	NA	NA
AXX36924.1\|2645628_2646507_-\|protease	putative protease HtpX	NA	NA	NA	NA
AXX36925.1\|2646703_2648752_-\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
AXX36926.1\|2648771_2649458_-	ProQ: influences osmotic activation of compatible solute ProP	NA	NA	NA	NA
AXX36927.1\|2649555_2650053_-	Free methionine-(R)-sulfoxide reductase	NA	NA	NA	NA
AXX36928.1\|2650181_2651465_+	Paraquat-inducible protein A	NA	NA	NA	NA
AXX36929.1\|2651433_2654067_+	mce-like protein	NA	NA	NA	NA
AXX36930.1\|2654042_2655584_+	Ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA
AXX36931.1\|2655698_2655938_+	hypothetical protein	NA	NA	NA	NA
AXX36932.1\|2656048_2656240_+	hypothetical protein	NA	NA	NA	NA
AXX36933.1\|2656258_2656906_-	serine/threonine protein phosphatase	A0A222YWF0	Escherichia_phage	5.5e-58	50.9
AXX36934.1\|2656926_2657100_-	hypothetical protein	NA	NA	NA	NA
AXX36935.1\|2657132_2657297_-	hypothetical protein	NA	NA	NA	NA
AXX36936.1\|2657581_2658304_-	G-nucleotide exchange factor SopE	NA	NA	NA	NA
AXX36937.1\|2659002_2659383_+	hypothetical protein	C6ZCX4	Enterobacteria_phage	8.9e-16	32.8
AXX36938.1\|2659712_2660189_+	hypothetical protein	NA	NA	NA	NA
AXX36939.1\|2660561_2660981_-	blasticidin S-acetyltransferase	NA	NA	NA	NA
AXX36940.1\|2661112_2661307_-	hypothetical protein	NA	NA	NA	NA
AXX36941.1\|2662121_2663282_-	Mobile element protein	A0A218MNI5	uncultured_virus	1.2e-39	49.1
AXX36942.1\|2663656_2663884_-	hypothetical protein	NA	NA	NA	NA
AXX36943.1\|2664249_2664468_-	hypothetical protein	NA	NA	NA	NA
AXX36944.1\|2665067_2665982_+	Permease of the drug/metabolite transporter	NA	NA	NA	NA
AXX36945.1\|2666114_2666273_+	hypothetical protein	NA	NA	NA	NA
AXX36946.1\|2666282_2666897_+	Putative inner membrane protein	NA	NA	NA	NA
AXX36947.1\|2669023_2669260_-\|tail	Phage tail fiber protein	A0A0M4RTP2	Salmonella_phage	6.7e-22	73.3
AXX36948.1\|2669472_2670159_-\|tail	phage tail assembly-like protein	A0A0M4QWS3	Salmonella_phage	1.1e-59	91.2
AXX36949.1\|2670479_2671076_-\|tail	Phage tail fiber protein	Q1MVL8	Enterobacteria_phage	6.6e-34	42.7
AXX36950.1\|2671068_2671443_-	hypothetical protein	Q8VNN7	Enterobacteria_phage	1.1e-58	82.1
AXX36951.1\|2671462_2671642_-\|terminase	Phage terminase large subunit	Q9EYD1	Enterobacteria_phage	2.7e-07	53.2
AXX36952.1\|2671628_2672120_-	hypothetical protein	Q9EYD0	Enterobacteria_phage	7.1e-42	56.2
AXX36953.1\|2672174_2672363_+	hypothetical protein	NA	NA	NA	NA
AXX36954.1\|2672427_2672595_+	lytic enzyme	NA	NA	NA	NA
AXX36955.1\|2672851_2673385_-\|tail	phage-tail assembly-like protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
AXX36956.1\|2673438_2673669_-	Lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
AXX36957.1\|2673699_2674353_+	hypothetical protein	A0A0U2I1R6	Escherichia_phage	3.2e-29	69.8
2674342:2674366	attL	NA	NA	NA	NA
AXX36958.1\|2674370_2674982_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	4.0e-50	55.0
AXX36959.1\|2674996_2675266_+	Mobile element protein	K7PHK0	Enterobacteria_phage	2.7e-11	47.8
AXX36960.1\|2676384_2677011_+	hypothetical protein	NA	NA	NA	NA
AXX36961.1\|2677125_2677278_-	Phage DNA invertase	S4TTF2	Salmonella_phage	9.0e-12	83.7
AXX36962.1\|2677490_2678213_+	invasion-associated secreted protein	NA	NA	NA	NA
AXX36963.1\|2678414_2678642_-\|tail	Phage tail fiber protein	A0A0M4RTP2	Salmonella_phage	2.1e-28	85.3
AXX36964.1\|2678763_2679480_-\|tail	Phage tail fiber protein	C6ZCZ5	Enterobacteria_phage	1.1e-22	78.5
AXX36965.1\|2679622_2681983_-\|tail	Phage tail fiber protein	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	67.7
AXX36966.1\|2681976_2682258_-\|tail	Phage tail assembly protein	A0A0N7KZA3	Stx2-converting_phage	1.0e-29	66.3
AXX36967.1\|2682267_2682963_-\|tail	Phage minor tail protein	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
AXX36968.1\|2683052_2683586_+	copper-zinc superoxide dismutase	Q9MC02	Salmonella_phage	1.8e-46	54.0
AXX36969.1\|2683702_2683882_-	Attachment invasion locus protein precursor	NA	NA	NA	NA
AXX36970.1\|2683958_2684273_-	hypothetical protein	Q8VNN8	Enterobacteria_phage	9.9e-21	49.5
AXX36971.1\|2684480_2684960_-	Phage outer membrane lytic protein Rz	Q56118	Enterobacteria_phage	1.4e-55	77.0
AXX36972.1\|2684977_2685427_-	Phage lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AXX36973.1\|2685413_2685749_-\|holin	Phage holin	A0A0M3ULK9	Salmonella_phage	4.1e-57	100.0
AXX36974.1\|2686067_2686340_+	hypothetical protein	NA	NA	NA	NA
AXX36975.1\|2686339_2686705_+	PipA protein	Q9MBM0	Phage_Gifsy-2	7.6e-65	99.2
AXX36976.1\|2687065_2687515_+	hypothetical protein	NA	NA	NA	NA
AXX36977.1\|2687888_2688416_-	hypothetical protein	NA	NA	NA	NA
AXX36978.1\|2688509_2689199_-	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-60	54.9
AXX36979.1\|2689328_2689556_-	Gifsy-2 prophage protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
AXX36980.1\|2689552_2690152_-	putative bacteriophage protein	A0A0U2RT94	Escherichia_phage	4.7e-96	82.9
2693953:2693977	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2896743 : 2907968

Salmonella_phage(30.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX37198.1\|2896743_2899356_-	Membrane alanine aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8
AXX37199.1\|2899782_2899974_+	Virulence protein msgA	S4TNM0	Salmonella_phage	6.2e-26	95.2
AXX37200.1\|2900244_2900931_+	hypothetical protein	NA	NA	NA	NA
AXX37201.1\|2900927_2901107_+	hypothetical protein	NA	NA	NA	NA
AXX37202.1\|2901290_2901917_+	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AXX37203.1\|2902048_2902297_-	Transposase	A0A0P0ZEB3	Stx2-converting_phage	1.5e-24	68.8
AXX37204.1\|2902564_2903533_-	Secreted effector protein	Q9MBL9	Phage_Gifsy-2	3.0e-193	99.4
AXX37205.1\|2904010_2904592_-\|tail	Phage tail fiber protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
AXX37206.1\|2904591_2906301_-\|tail	Phage tail protein	A0A0U2SAV1	Escherichia_phage	1.5e-91	66.0
AXX37207.1\|2906297_2906924_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
AXX37208.1\|2906907_2907537_-	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	1.6e-75	65.9
AXX37209.1\|2907557_2907968_+	Gifsy-2 prophage RecT	H6WRX0	Salmonella_phage	5.0e-33	100.0

DBSCAN-SWA_7

2979412 : 2986560

Ralstonia_phage(16.67%)

protease,integrase

attL 2974044:2974058|attR 2985296:2985310

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2974044:2974058	attL	NA	NA	NA	NA
AXX37266.1\|2979412_2979625_+\|integrase	phage integrase	A0A077KET4	Ralstonia_phage	1.9e-12	45.7
AXX37267.1\|2979786_2979984_+	hypothetical protein	NA	NA	NA	NA
AXX37268.1\|2980196_2982473_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AXX37269.1\|2982503_2982824_-\|protease	ATP-dependent Clp protease adaptor protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AXX37270.1\|2983147_2983369_+	Cold shock protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AXX37271.1\|2983498_2985445_-	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
2985296:2985310	attR	NA	NA	NA	NA
AXX37272.1\|2985441_2986560_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_8

3320237 : 3328141

Salmonella_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX37586.1\|3320237_3321563_-	Putative Dihydrolipoamide dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.3e-103	46.3
AXX37587.1\|3321778_3322633_+	Putative HTH-type transcriptional regulator ykgD	NA	NA	NA	NA
AXX37588.1\|3322683_3322848_-	Cobalt-zinc-cadmium resistance protein CzcA	NA	NA	NA	NA
AXX37589.1\|3322971_3323301_+	Heavy metal sensor histidine kinase	NA	NA	NA	NA
AXX37590.1\|3323500_3323746_+	CopE1	NA	NA	NA	NA
AXX37591.1\|3324168_3324531_+	glycosyl translocase	I1TED9	Salmonella_phage	3.9e-61	100.0
AXX37592.1\|3324527_3325454_+	Polymyxin resistance protein ArnC	I1TED8	Salmonella_phage	1.1e-168	97.0
AXX37593.1\|3325857_3327087_+	hypothetical protein	B9UDL6	Salmonella_phage	1.3e-52	36.0
AXX37594.1\|3327143_3327302_-	hypothetical protein	A0A1W5PUZ7	Salmonella_phage	8.4e-13	67.3
AXX37595.1\|3327473_3327692_+	Mobile element protein	U5P4I9	Shigella_phage	7.8e-17	78.3
AXX37596.1\|3327868_3328141_+	Integrase core domain	U5P429	Shigella_phage	2.8e-32	86.8

DBSCAN-SWA_9

3379499 : 3438758

Bacillus_phage(23.08%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX37646.1\|3379499_3380417_+\|protease	Putative stomatin/prohibitin-family membrane protease subunit YbbK	NA	NA	NA	NA
AXX37647.1\|3380413_3380866_+\|protease	Putative activity regulator of membrane protease YbbK	NA	NA	NA	NA
AXX37648.1\|3380866_3381283_-	HTH-type transcriptional regulator cueR	NA	NA	NA	NA
AXX37649.1\|3381392_3383894_+	Lead, cadmium, zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	5.1e-112	37.2
AXX37650.1\|3384047_3384875_+	putative secreted protein	NA	NA	NA	NA
AXX37651.1\|3384960_3385755_+	putative ligase	NA	NA	NA	NA
AXX37652.1\|3385956_3386436_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
AXX37653.1\|3386552_3388214_-	UDP-sugar hydrolase 5'-nucleotidase	NA	NA	NA	NA
AXX37654.1\|3388386_3389607_+	Fosmidomycin resistance protein	NA	NA	NA	NA
AXX37655.1\|3389821_3391498_+	Potassium/proton antiporter RosB	NA	NA	NA	NA
AXX37656.1\|3391546_3392896_-	Inosine-guanosine kinase	NA	NA	NA	NA
AXX37657.1\|3393003_3393975_+	Acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	1.7e-15	27.9
AXX37658.1\|3393971_3394934_-	Ferrochelatase	NA	NA	NA	NA
AXX37659.1\|3395162_3395807_-	Adenylate kinase	NA	NA	NA	NA
AXX37660.1\|3396164_3398039_-	Chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.7e-115	36.9
AXX37661.1\|3398149_3398755_-	Recombination protein RecR	NA	NA	NA	NA
AXX37662.1\|3398754_3399084_-	hypothetical protein	NA	NA	NA	NA
AXX37663.1\|3399129_3401058_-	DNA polymerase III subunits gamma and tau	A0A1L2BWV7	Bacteriophage	2.3e-43	41.5
AXX37664.1\|3401171_3401723_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
AXX37665.1\|3401875_3402253_-	hypothetical protein	NA	NA	NA	NA
AXX37666.1\|3402333_3402849_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
AXX37667.1\|3402862_3403030_+	Putative inner membrane protein	NA	NA	NA	NA
AXX37668.1\|3403099_3404035_+\|transposase	Putative transposase	Q2A0A7	Sodalis_phage	1.6e-63	52.1
AXX37669.1\|3404076_3407439_-	Small-conductance mechanosensitive channel	NA	NA	NA	NA
AXX37670.1\|3407557_3408211_-	DNA-binding transcriptional repressor AcrR	NA	NA	NA	NA
AXX37671.1\|3408352_3409546_+	MexE family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXX37672.1\|3409568_3412718_+	RND efflux system inner membrane transporter CmeB	NA	NA	NA	NA
AXX37673.1\|3413213_3413588_+	hypothetical protein	NA	NA	NA	NA
AXX37674.1\|3413615_3413834_+	hemolysin expression modulating protein	NA	NA	NA	NA
AXX37675.1\|3414012_3414564_+	Maltose O-acetyltransferase	NA	NA	NA	NA
AXX37676.1\|3414681_3415152_+	Putative inner membrane protein	NA	NA	NA	NA
AXX37677.1\|3415207_3415348_-	LSU ribosomal protein L36p	NA	NA	NA	NA
AXX37678.1\|3415353_3415614_-	LSU ribosomal protein L31p	NA	NA	NA	NA
AXX37679.1\|3415907_3417389_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
AXX37680.1\|3417697_3418009_+	methylated-DNA--protein-cysteine methyltransferase-related protein	NA	NA	NA	NA
AXX37681.1\|3418041_3418611_-	Glycoprotein-polysaccharide metabolism	NA	NA	NA	NA
AXX37682.1\|3418825_3419686_+	Acyl-CoA thioesterase II	NA	NA	NA	NA
AXX37683.1\|3419785_3421072_-	Ammonium transporter	NA	NA	NA	NA
AXX37684.1\|3421103_3421442_-	Nitrogen regulatory protein P-II	NA	NA	NA	NA
AXX37685.1\|3421654_3423436_-	putative multidrug transporter membrane ATP-binding components	W8CYL7	Bacillus_phage	5.4e-39	26.9
AXX37686.1\|3423428_3425201_-	ATP-binding component	W8CYL7	Bacillus_phage	4.7e-51	29.8
AXX37687.1\|3425241_3425700_-	Putative HTH-type transcriptional regulator ybaO	NA	NA	NA	NA
AXX37688.1\|3425815_3426868_+	cysteine synthase	NA	NA	NA	NA
AXX37689.1\|3426917_3427736_-	HMP-PP hydrolase Cof	NA	NA	NA	NA
AXX37690.1\|3427836_3429537_+	Oligopeptide ABC transporter	NA	NA	NA	NA
AXX37691.1\|3429601_3430297_+	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.2e-87	68.4
AXX37692.1\|3430402_3430801_-	4-hydroxybenzoyl-CoA thioesterase family active site	NA	NA	NA	NA
AXX37693.1\|3430904_3431279_-	putative membrane protein	NA	NA	NA	NA
AXX37694.1\|3431428_3433300_-	Peptidyl-prolyl cis-trans isomerase PpiD	NA	NA	NA	NA
AXX37695.1\|3433590_3433863_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
AXX37696.1\|3434071_3436426_-\|protease	ATP-dependent protease La Type I	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5
AXX37697.1\|3436611_3437883_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.2e-130	56.2
AXX37698.1\|3438134_3438758_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP023437

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14202 : 21203

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX38833.1\|14202_14712_+	putative DNA polymerase III epsilon subunit (3'-5' exonuclease)	O64348	Escherichia_phage	1.0e-06	42.9
AXX38834.1\|14814_15231_+	hypothetical protein	NA	NA	NA	NA
AXX38835.1\|15293_15893_+	hypothetical protein	NA	NA	NA	NA
AXX38836.1\|15889_16831_-	Mobile element protein	Q2A0A7	Sodalis_phage	4.7e-74	54.7
AXX38837.1\|17245_18451_+	Chromosome (plasmid) partitioning protein ParA	A0A077SL49	Escherichia_phage	1.5e-162	69.3
AXX38838.1\|18450_19425_+	Chromosome (plasmid) partitioning protein ParB	A0A1B0V750	Salmonella_phage	5.1e-84	53.5
AXX38839.1\|19506_20781_-	Error-prone lesion bypass DNA polymerase V (UmuC)	F1C5A5	Cronobacter_phage	3.9e-156	64.5
AXX38840.1\|20780_21203_-	Error-prone repair protein UmuD	A0A1W6JNS2	Morganella_phage	2.0e-29	52.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023436

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP023437

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection