CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP019292	Vibrio vulnificus strain FORC_053 chromosome 3, complete sequence	1 crisprs	cas14j,DEDDh,cas14k,DinG	1	0	1
CP019291	Vibrio vulnificus strain FORC_053 chromosome 2, complete sequence	0 crisprs	WYL,cas3,csa3,DEDDh,RT	0	0	1
CP019290	Vibrio vulnificus strain FORC_053 chromosome 1, complete sequence	1 crisprs	DEDDh,WYL,csx1,cas3,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	0	16	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP019292_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019292_1

198252-198501

Orphan

Consensus_repeat	Method
CAGAGTAAGCTCTATTTTCTCGGTTAGGTTCCTAACTTGGAATTTCCCAAGACGAA	PILER-CR

2 spacers

The CRISPR arrays of CP019292_1

>merge|CP019292|1|198252-198501|PILER-CR
CAGAGTAAGCTCTATTTTCTCGGTTAGGTTCCTAACTTGGAATTTCCCAAGACGAAAACGGGTACTATGCTGTCGAAGGGCTTTCCGCAGCGTCTACCAGATCAAGCCTCAATTTCTCGGTTAGGTTCCTAACTTGGAATTTCCCAAGATGAATATGGGTACTATGCAGTTGAAGGGTTTGTCGTAATGTCTACCAGAGTAAGCTCTATTTTCTCGGTTAGGTTCCTAACTTGGAATTTCCCAAGACGAA

>CP019292|1|1|198252-198501|PILER-CR
CAGAGTAAGCTCTATTTTCTCGGTTAGGTTCCTAACTTGGAATTTCCCAAGACGAA	AACGGGTACTATGCTGTCGAAGGGCTTTCCGCAGCGTCTACCAGATCAAGCCTCAA
TTTCTCGGTTAGGTTCCTAACTTGGAATTTCCCAAGATGAATATGGGTACTATGCA	GTTGAAGGGTTTGTCGTAATGTCTACCAGAGTAAGCTCTAT
TTTCTCGGTTAGGTTCCTAACTTGGAATTTCCCAAGACGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP019292.1\|AXX63191.1\|192983_194399_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319252
CP019292.1\|AXX63199.1\|203776_205309_-\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63205.1\|209108_209600_-\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63189.1\|190032_190941_-\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63187.1\|189196_189757_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271319
CP019292.1\|AXX63186.1\|188623_189157_+\|Nudix-hydrolase,-phage-associated	unknown	unknown	gnl\|CDD\|240046
CP019292.1\|AXX63200.1\|205684_206020_-\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63192.1\|194433_195489_-\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63193.1\|195605_196154_+\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63188.1\|189822_190017_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376852
CP019292.1\|AXX63190.1\|191650_192868_+\|Chromosome-(plasmid)-partitioning-protein-ParA	unknown	unknown	gnl\|CDD\|224113
CP019292.1\|AXX63204.1\|208614_209070_+\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63197.1\|202484_203177_+\|Outer-membrane-protein	unknown	unknown	gnl\|CDD\|225439
CP019292.1\|AXX63203.1\|207501_208536_+\|Integral-membrane-protein-TerC	unknown	unknown	gnl\|CDD\|274743
CP019292.1\|AXX63201.1\|206067_206469_-\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63194.1\|196190_197018_-\|NAD-dependent-protein-deacetylase-of-SIR2-family	unknown	unknown	gnl\|CDD\|223915
CP019292.1\|AXX63195.1\|197120_197753_-\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63202.1\|207079_207319_-\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63196.1\|198770_200585_-\|hypothetical-protein	unknown	unknown	unknown
CP019292.1\|AXX63198.1\|203234_203744_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP019292.1\|AXX63187.1\|189196_189757_-\|hypothetical-protein	gnl\|CDD\|271319	cd15457, NADAR, Escherichia coli swarming motility protein YbiA and related proteins. This family of uncharacterized domains was initially classified as Domain of Unknown Function (DUF1768). It contains members such as the E. coli swarming motility protein YbiA. Mutations in YbiA cause defects in Escherichia coli swarming, but not necessarily in motility. More recently, this family has been predicted to be involved in NAD-utilizing pathways, likely to act on ADP-ribose derivatives, and has been named the NADAR (NAD and ADP-ribose) superfamily.	1.16165e-40
CP019292.1\|AXX63191.1\|192983_194399_+\|hypothetical-protein	gnl\|CDD\|319252	cd16394, sopB_N, N-terminal domain of sopB protein, which promotes proper partitioning of F1 plasmid. Escherichia coli SopB acts in the equitable partitioning of the F plasmid in the SopABC system. SopA binds to the sopAB promoter, while SopB binds SopC and helps stimulate polymerization of SopA in the presence of ATP and Mg(II). Mutation of SopA inhibits proper plasmid segregation. This N-terminal domain is related to the ParB N-terminal domain of bacterial and plasmid parABS partitioning systems, which binds parA.	1.93182e-18
CP019292.1\|AXX63186.1\|188623_189157_+\|Nudix-hydrolase,-phage-associated	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.05649e-08
CP019292.1\|AXX63194.1\|196190_197018_-\|NAD-dependent-protein-deacetylase-of-SIR2-family	gnl\|CDD\|223915	COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription].	1.01259e-30
CP019292.1\|AXX63197.1\|202484_203177_+\|Outer-membrane-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	1.51265e-49
CP019292.1\|AXX63188.1\|189822_190017_-\|hypothetical-protein	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.000361206
CP019292.1\|AXX63203.1\|207501_208536_+\|Integral-membrane-protein-TerC	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	1.15237e-101
CP019292.1\|AXX63190.1\|191650_192868_+\|Chromosome-(plasmid)-partitioning-protein-ParA	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.40647e-19

>CP019292.1|AXX63195.1|197120_197753_-|hypothetical-protein
MNQRIYFSVKEAIQLKNDIKTLNNFVCSEFTLKKKITKILNEFSQQFGYTSYSHLKKISESWNESSYDKFLKDLVSASDAEKHFINTYPEITNNPGVFENAYNLWLVPPAKKIEYDFKLNELHELINQSELNEHVYSGEDEFPIEFLIQAKNRKFKEFNCWDSFTVVNGNGVVKEYTIIEQYSHIYTNQQVLRVGEGIWVEVSNGAFRVK
>CP019292.1|AXX63194.1|196190_197018_-|NAD-dependent-protein-deacetylase-of-SIR2-family
MKKIREILRKTDKLIILAGAGFSADSGLPVFRSNNGFWDNYPQLNGKEFTQVSSPEMLYENEDLFQGFYIHRKNLYDSTNPHIGYKKLLDFINENNIDYFVLTTNVDEHFEKAGYSKDKIYEVHGSINHWQCGKYSCDSPIFPINEKIEVDNNLVPEHKVYCPKCESIARPNILMFGDFEFKGDRTDIQAKLFNQWYYNIFRHDDLNVTVLEFGAGQSVGRLRMQHSSILMDIPDAIGIRINTDPEEINLIRRNNMMLETKSSLEFINELCFYKP
>CP019292.1|AXX63193.1|195605_196154_+|hypothetical-protein
MKMEVERYGFFVCAQNDDITLAGGLRSGNSRAHETRLKYIIMDNHRIKSLMKEGIDQVEAQRLSEVGHVELFVEDGTLFDVNGLVNIVIKNEKNFKERRQGYATKVIQSIVATTGKDLEIMDIQPGNAARFWKSLGTVFHNGHGKEITNAITKKSGIVHGTVSKEKVLSISKEKNKEASFDI
>CP019292.1|AXX63192.1|194433_195489_-|hypothetical-protein
MITTFTATPKRFDKFDFNKIGTGTGLARHGLGFYFGSPDLAKDYLSTYKTYDGAEPTYMYKSKIIEPETIPYEVIEVIESKGFDQAIDHFSGMSEHIKFLNVLTNNGNGKAYSCPHRGVLYQVSIPHIDISDLKDWSETLYESDDLIDIYIDFCNKHVNPQDFDPDTLKCLADLGVFIDEDTDFELIIENLLDKGFDETYDVDPDDDEIYPSATCSTDLKDICIHRAFDDYDFDDGFQEDFDNLSQKFHAAFQSLIKNTPDFHHEDFSLGDIHSALNHAISDLNPDLSEIECAKMANEFLCKNLKISGYTAEAMYGNPGEKEIVIIDEQLLESAKIVEVNPYNDFEFGYDY
>CP019292.1|AXX63191.1|192983_194399_+|hypothetical-protein
MVAQAINSHIEELNRVDINQFLGELTKELEVDLSGFSGLVNVNSSGTFYLTSPLYGETELRPMELRTYKYDEIESKTVVNTRSNARIQELLNSLSLQDILGTLQESGQSLPAIGVEIDDGNGGKVVEIIDGSRRRRSCIIAEKDYYVFVLKGNVTAIQRKFLRETFKATKEHSFLEECIAIAADLHEYKTENPKASIEEFSNIDSKYSSSKVKRMVSFTKIPLSIIKHFSDITLRYNFFDKSLYPLYTKFNALNMLDVLDANLKNEVRVFEEHVDDDNDLSDVNFNVIPDPYAKSVIDKLDGLAEQLSEISEDMFLYVPREAITERFVSHLAYPLYIKANDLGILDEIVVELKNHRVAIEATDDAPETVSEHIPLERLESAFKTILDGLSSYQDDNKGRSGIDGQVEAPENVVPAPKKARTVYHWGSLKSKKYIRSTQKESGELMISFKGASDEVKEKTLEYLNKLMQEED
>CP019292.1|AXX63190.1|191650_192868_+|Chromosome-(plasmid)-partitioning-protein-ParA
MTNLRAENIQALKRQRTALEKHRKVKSMTSGKVEVKEELIEQFYSKKQLVGALNISDAQFEEVKKGMIEDGYIFNQNNSNQYQLDRVQAIEFVKRCGVKSFKEIRKEKNISPSVVVVQTAKGGVGKSTTAQGVAIEAALDPIRNMRVCLVDFDPQGTQRVFLSKEAVDAKDDNYISFVDKFQDWMDDDLETRKEKREFYRNELLEDVIIPTSVPALKLIPSVLTDLSFQLYSSAKLLEEGKQFSMSYVRDMIIEPLKDDFDLFVFDLGPSPDMFLMNALYAATDLLMPATGKPIDFRAYEKHLVNLEYVFKEMLPEDWKGLNSIKTIINRATKADKVVWKNVSTILSVSDCLPEIIQESVAFSQSAEDYKPIQLYKTRKASVREAQNSMNRLYQSYIDVVSERFL
>CP019292.1|AXX63189.1|190032_190941_-|hypothetical-protein
MQIRGLEANVSQEILAQDVRLDSLIAKAEEMANGVKYLYVKRSKSYGSFVVTLSTKTTKTFRFDCLDSLSESYADAKFTIFEDRGQNTKAVTKKRSQGGIYMRAIERKNKISTEVKIVMSFADNSGKSAFLGTFDSEKISVEIVDAWAKTVKHAAANGTVTYQEVKDSFNYIKKNYANATLVDFLTLSRGWFDMELKAKNVTGVFAPAPVVRAKGSRVLPDNTSFQSRHGRGNIIVSKDGHRMTLAFRDTPIKTVETKAVQWLNENITSLNSMTDSNKQKLKENWNAFLNRCQTCKPQNMNH
>CP019292.1|AXX63188.1|189822_190017_-|hypothetical-protein
MLEVEIESKDFESNLDSVLEEVSSTGKTAVLKMNNEPVAYIMDIHTYNETKALIADPIPQTANQ
>CP019292.1|AXX63187.1|189196_189757_-|hypothetical-protein
MLITENFVFFYDKSEVYSQQSKHGFTYKGFKFKSAEHWMMFHKARIMILGASSTMKDVFEFMRMHPKCLFRKILDAKTPQAAKMLGRDVKPYSEEVWKENREDVVFYGNVLKFQQNKVCSESMATVGTKQFVEAAKNDLNWGVGLDEKNPKILNPKNWVGLNLLGKQLDRVNQVLFINPVSVEIPY
>CP019292.1|AXX63186.1|188623_189157_+|Nudix-hydrolase,-phage-associated
MKRKVIEHIPGSLGKRNAAFVGFHFKSKAWRGFESLPVEARNKEILQVALNLRWDSRFGFPGGLVEEGESLKHGAVREVREELNFSIDESKLELLCTHQVKDDLNAHFFTYEITEEEKRLMYKNLLDAPHFGFEISGLIFLQCVNHESGKGVDSFLENTSLAPAVDIEIKKLMEKYA
>CP019292.1|AXX63196.1|198770_200585_-|hypothetical-protein
MTIKNKEQFANCVRSLQKDVNSQAGTTIKLSVIREALAHALEQKSSNGLLSVLPISLCDPSLPARLHKSLMELAGVSYRTSLSTFPYPSGLELSQSEIMEILQSAPKPKFKEEDASYLMMMAVDSGFKYLITGDVSIIPNGDGTWSSPDKSNLKLLRLLLGDERVSYIPNTHNISASKFKDIYSKLYQPFSECIKSRDLWQQVENSIISSLGNENIMLEDGGLFTITPQNFDITVMELLQLNLVSVVTGEPINQKALGCISVGFINDLLINKKYAERDFYIENVWKPMLGDKFESISYDKYEKVCSDDIWSKESKQAINELFLTICKANNWLSKPISSIVIPRFNDDIQTQCYRFELADESFYCKQTIDEVELISKPYARSTVLDYLEGEIIVESDEIEEKISEIELEYQEAQSELDGIDEDDEIYYFFEDPSDTRYEKLSKLPIPLNVPRIYNVEAKLSKKAIVSGTAFDLSEADGYLGYYYDYMDMFTNDFCYLSNAAKQFNDLRSAESIFVLGSFSYSNINDFQKCLDEIVKFHMVDFIVIDIDFIKGVFPAYPHKSFAGLDNKLQSKVDELFHCIESNFEVSEYTLGTQKSDPLFNAGIY
>CP019292.1|AXX63197.1|202484_203177_+|Outer-membrane-protein
MYNKNHQLNKEMVKIMKKIIALSLICMSLVGCQVTRQNAMTGEYETNSTVKGGLLGCVAGAVVGGALNGGKGAAIGCGAGGGAGLFVGNNFDKQEAELRKQLLNSGVQVNRQGNEIRLIMNGAITFNTGKSSLKQAVYPKLRSIVTVMNRYPDTVLLVEGHTDSVGSSARNKELSFYRAQSVKTALNTMGLSSTRTDITGYGESMPICSNKTEQGRQCNRRVELRILPNG
>CP019292.1|AXX63198.1|203234_203744_+|hypothetical-protein
MKPIYTEICFSSGVLIDGFRTALKFFDSQKSIDSLVEVWHGKKSWDISLNQFAEEYRAIEKHRDDYTELSSDNSQDKDDLEGYFRASEWYEKVLEKYREQAKALNVTTHRINCYIFNKEYHESDDHELKKKNSFLTIDDLLNGLDYPQDVIENMKRDFVIKYLKENPSL
>CP019292.1|AXX63199.1|203776_205309_-|hypothetical-protein
MNNYTTIMSKCLDSISRNLEDEKSHLDDLLIKRTRITKNLQQAISTALSKSFSESTTVEEMVSIIKAALNLDLTPFLNRIQSENEEEEAKAFARINQYQITYLDFNPGDVEDVIDALQDQKQTALKRLATLLNQDPILAPYLEGREIKHLSVSKTQYRDVFHIAATYSDQFFGKCIGKFGAITRFMNSISSETYYRMMNANIMLNEMDPDAKAYVIKNKGKLTPSSFTETVDDLRKEIFQCELTESVQKTKLSKYKYEHRMYEVAKSHKPISVEEVKSSILMNLERESLKGDIRKLLIYLEDVSKTNESIKYIARDISELYASRCLLMNLIAYYSRSTSLLDEVFEKKRLLLNKASKIVTEKDFKTYGSTMFNPEQFNAIYLANAELRGKSELISYDFSKYSIESPFDIEEHLNKLNAEPSVLQLFPVRFGFSVEKSPDRNFESSGLFNEFFKTHYELIYEIEKENSLINKMVSNLENFNKLQLETDSDSELNLDEGISVGFDASGFKHN
>CP019292.1|AXX63200.1|205684_206020_-|hypothetical-protein
MNTNPVADFLNNSILSITGNKSSFLSKALHKLHSASESNASESIDSAFMGKHVSEKPQSMLRVVRNVEQPNFAFCENPLAQKKLSRVPGLYGCNRWKSNRNKVEQEEIKIF
>CP019292.1|AXX63201.1|206067_206469_-|hypothetical-protein
MNAQTVTVFQKGKGRLGAQTLSLNSGNRREEKPNRPQLKVVRQSISDDEAIKRANMLAPEDQNMHTANTRRKMRVVHNNMQDDQNTYEPRQSFYGKPAAKEKEHRVPGLYGCNRWKSNQQKQGFDSQESFSFF
>CP019292.1|AXX63202.1|207079_207319_-|hypothetical-protein
MNNKLRIFSISFSTYLIGVMIACIANWYVGIEFSSSSLFYMIGSGSLLQITSFIIYLIFDIKTSSKPKSLDTLKYPQKL
>CP019292.1|AXX63203.1|207501_208536_+|Integral-membrane-protein-TerC
MELAPLGFPLELITVLGIAVIASVALDLWGHRNSTEISVKDAGIWSVFWVGLALAFYGFLYVEYGKDYASLFLSGYALEKTLSVDNLMVFVAVFSAFGIKDSVLKHRILYWGIIGALVFRAIFIAAGSMLYSMGNWVELVFAAFILYAAYVMVFRDEDDEDIDYEQHKAVRLVKKFFPVIPMLHGKSLFVNHETFEKLKETNPSLSGIKKAAYYATPAFLCLTVIELTDVAFSFDSVPAIIAITEEPILVYSAVIFAILGLRNLFFLLQAAVDKLSKLEAWVGLILLFIAAKLIISGLNKTFGLEIPKIDHSLSLYVVIGCIVCGIVHSLIADKLQKKEESAEA
>CP019292.1|AXX63204.1|208614_209070_+|hypothetical-protein
MFLDEKIDPVAYAEELAKKRKYSKLPKDLSLSSRMLYLESLPQEVKMEGDRVGLYTKSGTKVATGYSRTVIGDYGSFLEISKHDMIRESLCCKDGEQYRFKDPKYKDSVKYYWYTAKDDSDIKIYFQQHGVSYADYQPGMFYISPYELIIK
>CP019292.1|AXX63205.1|209108_209600_-|hypothetical-protein
MSSEKEQLKGFESLVIKLKNEYAEKNGAVTCEFSTSEEMLVEKLGILNKHSLHSNELSAFWIMFPCNTCKGYHEDRPIHVLLQDGISFQNQADLSNIKVLHSKIEQQNHELEVIKTHCENHISMTPESVAELVELALKGHYSSPHCGKVPDSIIEASYLSDTK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP019292_1	1.2\|198420\|41\|CP019292\|PILER-CR	198420-198460	41	CP019292.1	198211-198251	0	1.0

1. spacer 1.2|198420|41|CP019292|PILER-CR matches to position: 198211-198251, mismatch: 0, identity: 1.0

tatgggtactatgcagttgaagggtttgtcgtaatgtctac	CRISPR spacer
tatgggtactatgcagttgaagggtttgtcgtaatgtctac	Protospacer
*****************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

507027 : 516516

Vibrio_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX63534.1\|507027_507672_-	Tellurium resistance protein TerD	A0A2I7QY07	Vibrio_phage	1.6e-25	35.3
AXX63535.1\|507726_508032_-	hypothetical protein	NA	NA	NA	NA
AXX63536.1\|508076_508301_-	hypothetical protein	NA	NA	NA	NA
AXX63537.1\|508313_509192_-	Citrate lyase beta chain	NA	NA	NA	NA
AXX63538.1\|509198_510296_-	putative ATP/GTP-binding protein	A0A172Q0S8	Acinetobacter_phage	4.1e-45	35.1
AXX63539.1\|510326_510632_-	hypothetical protein	A0A1I9KG94	Aeromonas_phage	7.9e-07	40.5
AXX63540.1\|510689_511820_-	Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins	A0A172Q0Y1	Acinetobacter_phage	2.6e-18	33.7
AXX63541.1\|511953_512556_-	Tellurium resistance protein TerD	K4JRX3	Caulobacter_phage	9.7e-17	30.1
AXX63542.1\|512633_513227_-	Tellurium resistance protein TerD	K4JRX3	Caulobacter_phage	7.1e-20	35.6
AXX63543.1\|513460_514642_-	hypothetical protein	NA	NA	NA	NA
AXX63544.1\|514747_516154_+	DNA repair protein RadA	NA	NA	NA	NA
AXX63545.1\|516207_516516_-	hypothetical protein	R9UB46	Vibrio_phage	3.8e-09	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP019290

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CRISPR-Cas detection and classification

Crispr_ID: CP019290_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019290_1

2856086-2857733

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR

27 spacers

WYL,cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of CP019290_1

>merge|CP019290|1|2856086-2857733|CRISPRCasFinder,CRT,PILER-CR
TTTCTACGCTGCCTGTGCGGCAGTGAACACGTTAAGCCTTTCGGCGGTGAAACCCGTGAATTTCTAAGCTGCCTATACGGCAGTGAACAAAGGCCGAGACACCATCGAAGTGGCGTTCTTTTTCTAAGCTGCCTATACGGCAGTGAACAATACAGTTGCGACAAAGTCGGGGGTGTTTCATTTCTAAGCTGCCTATACGGCAGTGAACAATCCATCATTGATTCGTGCCTTGATGCTTATTTTCTAAGCTGCCTATACGGCAGTGAACAGAAAGCACACCTACCACCTTGATTCTGGAACTTTCTAAGCTGCCTATACGGCAGTGAACCTTATCTTCGCATCTACGAGCGTGATGCAAATTTTCTAAGCTGCCTATACGGCAGTGAACATCCTCAAAGCGCGTCAGCTCGGATTCTCCACTTTCTAAGCTGCCTATACGGCAGTGAACATCTTCGGTCAACATGTTAGTGAACGAACGATTTTCTAAGCTGCCTATACGGCAGTGAACCTTAACCTTCTTCGCTTTTTCTTGCTCCATTATTTCTAAGCTGCCTATACGGCAGTGAACCCATAACTCCTAGCGGGTTTATCTTTCCTCTTTTTCTAAGCTGCCTATACGGCAGTGAACGGTAAAAAACGGCATCACTCGCGGAGCTAATGTTTCTAAGCTGCCTATACGGCAGTGAACGAGCCCAAGCAAAAACAAAAATATCCCTTATCTTTCTAAGCTGCCTATACGGCAGTGAACTCACAACTACGTCGGCCGAGATAAACCCAGCATTTCTAAGCTGCCTATACGGCAGTGAACAAGCAAGAGGTTACTACTGGCATTAACGCGGATTTCTAAGCTGCCTATACGGCAGTGAACAAGCGCAGACAGGATAAGCGCAGGCTGCTAGATTTCTAAGCTGCCTATACGGCAGTGAACGCATAAAGACGCTCAGCGCCAGCAGCGGATTTTTTCTAAGCTGCCTATACGGCAGTGAACGATAAAGGCAAATCCCTTCTTGATGCTCTAATTTTCTAAGCTGCCTATACGGCAGTGAACCAAATGGAATGTTCGTTATCCTTCCTCAATCTTTTCTAAGCTGCCTATACGGCAGTGAACGATGTTCGACTGCTTGCAATTGGTGGGGTTGATTTCTAAGCTGCCTATACGGCAGTGAACCGAAGAACCAGTCGCCCTTGTCCTTGATTAGTTTTCTAAGCTGCCTATACGGCAGTGAACGCGTTTCGCAAGCTTTCATCCTTGATTAGATATTTCTAAGCTGCCTATACGGCAGTGAACAAAGTCACGCACTTGATTACATGTACCGAAAATTTCTAAGCTGCCTATACGGCAGTGAACCCTACCACAACACAAAGAAGCATGCTTGCATTTTTCTAAGCTGCCTATACGGCAGTGAACGGATTCATGGAACCATTACATCGACTCAATCATTTCTAAGCTGCCTATACGGCAGTGAACGCTGACTGTATTTGCTGTAAACGTCGCTATCATTTCTAAGCTGCCTATACGGCAGTGAACTTGGTTTTAGACCGTGCAATTTCTTTCGTTAATTTCTAAGCTGCCTATACGGCAGTGAACCTGTAATCCGTAGGGAAAAGGAATCGCGTAGCTTTCTAAGCTGCCTATACGGCAGTGAAC

>CP019290|1|1|2856086-2857733|CRISPRCasFinder
TTTCTACGCTGCCTGTGCGGCAGTGAAC	ACGTTAAGCCTTTCGGCGGTGAAACCCGTGAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAAGGCCGAGACACCATCGAAGTGGCGTTCTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AATACAGTTGCGACAAAGTCGGGGGTGTTTCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AATCCATCATTGATTCGTGCCTTGATGCTTAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AGAAAGCACACCTACCACCTTGATTCTGGAAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTTATCTTCGCATCTACGAGCGTGATGCAAAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATCCTCAAAGCGCGTCAGCTCGGATTCTCCAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATCTTCGGTCAACATGTTAGTGAACGAACGAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTTAACCTTCTTCGCTTTTTCTTGCTCCATTA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCATAACTCCTAGCGGGTTTATCTTTCCTCTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGTAAAAAACGGCATCACTCGCGGAGCTAATG
TTTCTAAGCTGCCTATACGGCAGTGAAC	GAGCCCAAGCAAAAACAAAAATATCCCTTATC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TCACAACTACGTCGGCCGAGATAAACCCAGCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAGCAAGAGGTTACTACTGGCATTAACGCGGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAGCGCAGACAGGATAAGCGCAGGCTGCTAGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCATAAAGACGCTCAGCGCCAGCAGCGGATTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATAAAGGCAAATCCCTTCTTGATGCTCTAAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CAAATGGAATGTTCGTTATCCTTCCTCAATCT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATGTTCGACTGCTTGCAATTGGTGGGGTTGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CGAAGAACCAGTCGCCCTTGTCCTTGATTAGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCGTTTCGCAAGCTTTCATCCTTGATTAGATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAAGTCACGCACTTGATTACATGTACCGAAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCTACCACAACACAAAGAAGCATGCTTGCATT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGATTCATGGAACCATTACATCGACTCAATCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCTGACTGTATTTGCTGTAAACGTCGCTATCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTGGTTTTAGACCGTGCAATTTCTTTCGTTAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTGTAATCCGTAGGGAAAAGGAATCGCGTAGC
TTTCTAAGCTGCCTATACGGCAGTGAAC

>CP019290|1|1|2856086-2857733|CRT
TTTCTACGCTGCCTGTGCGGCAGTGAAC	ACGTTAAGCCTTTCGGCGGTGAAACCCGTGAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAAGGCCGAGACACCATCGAAGTGGCGTTCTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AATACAGTTGCGACAAAGTCGGGGGTGTTTCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AATCCATCATTGATTCGTGCCTTGATGCTTAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AGAAAGCACACCTACCACCTTGATTCTGGAAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTTATCTTCGCATCTACGAGCGTGATGCAAAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATCCTCAAAGCGCGTCAGCTCGGATTCTCCAC
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATCTTCGGTCAACATGTTAGTGAACGAACGAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTTAACCTTCTTCGCTTTTTCTTGCTCCATTA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCATAACTCCTAGCGGGTTTATCTTTCCTCTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGTAAAAAACGGCATCACTCGCGGAGCTAATG
TTTCTAAGCTGCCTATACGGCAGTGAAC	GAGCCCAAGCAAAAACAAAAATATCCCTTATC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TCACAACTACGTCGGCCGAGATAAACCCAGCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAGCAAGAGGTTACTACTGGCATTAACGCGGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAGCGCAGACAGGATAAGCGCAGGCTGCTAGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCATAAAGACGCTCAGCGCCAGCAGCGGATTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATAAAGGCAAATCCCTTCTTGATGCTCTAAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CAAATGGAATGTTCGTTATCCTTCCTCAATCT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATGTTCGACTGCTTGCAATTGGTGGGGTTGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CGAAGAACCAGTCGCCCTTGTCCTTGATTAGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCGTTTCGCAAGCTTTCATCCTTGATTAGATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAAGTCACGCACTTGATTACATGTACCGAAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCTACCACAACACAAAGAAGCATGCTTGCATT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGATTCATGGAACCATTACATCGACTCAATCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCTGACTGTATTTGCTGTAAACGTCGCTATCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTGGTTTTAGACCGTGCAATTTCTTTCGTTAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTGTAATCCGTAGGGAAAAGGAATCGCGTAGC
TTTCTAAGCTGCCTATACGGCAGTGAAC

>CP019290|1|1|2857046-2857733|PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATAAAGGCAAATCCCTTCTTGATGCTCTAAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CAAATGGAATGTTCGTTATCCTTCCTCAATCT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATGTTCGACTGCTTGCAATTGGTGGGGTTGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CGAAGAACCAGTCGCCCTTGTCCTTGATTAGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCGTTTCGCAAGCTTTCATCCTTGATTAGATA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAAGTCACGCACTTGATTACATGTACCGAAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCTACCACAACACAAAGAAGCATGCTTGCATT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGATTCATGGAACCATTACATCGACTCAATCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GCTGACTGTATTTGCTGTAAACGTCGCTATCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTGGTTTTAGACCGTGCAATTTCTTTCGTTAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTGTAATCCGTAGGGAAAAGGAATCGCGTAGC
TTTCTAAGCTGCCTATACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP019290.1\|AXX60930.1\|2855298_2855970_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379470
CP019290.1\|AXX60932.1\|2858536_2859568_-\|CRISPR-associated-protein,-Csy3-family	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
CP019290.1\|AXX60921.1\|2850406_2850595_+\|Transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
CP019290.1\|AXX60926.1\|2852967_2853417_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371323
CP019290.1\|AXX60933.1\|2859579_2860467_-\|CRISPR-associated-protein,-Csy2-family	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
CP019290.1\|AXX60938.1\|2867370_2867895_-\|phage-integrase-family-protein	unknown	unknown	gnl\|CDD\|271182
CP019290.1\|AXX60936.1\|2865320_2866310_-\|CRISPR-associated-protein-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
CP019290.1\|AXX60929.1\|2854198_2855302_+\|ABC-transport-protein,-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|226984
CP019290.1\|AXX60928.1\|2854023_2854224_-\|hypothetical-protein	unknown	unknown	unknown
CP019290.1\|AXX60922.1\|2850611_2851604_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
CP019290.1\|AXX60931.1\|2857888_2858527_-\|CRISPR-associated-protein,-Csy4-family	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|378224
CP019290.1\|AXX60937.1\|2866424_2867219_-\|Transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP019290.1\|AXX60939.1\|2868463_2869180_-\|Periplasmic-protein	unknown	unknown	gnl\|CDD\|225414
CP019290.1\|AXX60940.1\|2869580_2871338_+\|Putative-hemolysin	unknown	unknown	gnl\|CDD\|153248
CP019290.1\|AXX60935.1\|2861955_2865324_-\|CRISPR-associated-helicase-Cas3,-Yersinia-type	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
CP019290.1\|AXX60934.1\|2860463_2861726_-\|CRISPR-associated-protein,-Csy1-family	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|378220
CP019290.1\|AXX60927.1\|2853413_2853881_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
CP019290.1\|AXX60923.1\|2851760_2852012_-\|hypothetical-protein	unknown	unknown	unknown
CP019290.1\|AXX60925.1\|2852497_2852929_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371323
CP019290.1\|AXX60924.1\|2852151_2852490_+\|protein-of-unknown-function-DUF1232	unknown	unknown	gnl\|CDD\|225876

Protein	Function_ID	Function_description	E-value
CP019290.1\|AXX60930.1\|2855298_2855970_+\|hypothetical-protein	gnl\|CDD\|379470	pfam14103, DUF4276, Domain of unknown function (DUF4276). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 224 amino acids in length. There is a single completely conserved residue E that may be functionally important.	2.07457e-53
CP019290.1\|AXX60932.1\|2858536_2859568_-\|CRISPR-associated-protein,-Csy3-family	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP019290.1\|AXX60926.1\|2852967_2853417_-\|hypothetical-protein	gnl\|CDD\|371323	pfam10980, DUF2787, Protein of unknown function (DUF2787). This bacterial family of proteins has no known function.	2.17623e-36
CP019290.1\|AXX60933.1\|2859579_2860467_-\|CRISPR-associated-protein,-Csy2-family	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.29178e-150
CP019290.1\|AXX60921.1\|2850406_2850595_+\|Transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	5.60474e-21
CP019290.1\|AXX60938.1\|2867370_2867895_-\|phage-integrase-family-protein	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.90006e-39
CP019290.1\|AXX60929.1\|2854198_2855302_+\|ABC-transport-protein,-ATP-binding-subunit	gnl\|CDD\|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	4.63856e-71
CP019290.1\|AXX60925.1\|2852497_2852929_-\|hypothetical-protein	gnl\|CDD\|371323	pfam10980, DUF2787, Protein of unknown function (DUF2787). This bacterial family of proteins has no known function.	7.00892e-48
CP019290.1\|AXX60922.1\|2850611_2851604_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	2.19212e-18
CP019290.1\|AXX60931.1\|2857888_2858527_-\|CRISPR-associated-protein,-Csy4-family	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	2.48053e-58
CP019290.1\|AXX60937.1\|2866424_2867219_-\|Transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	4.13487e-11
CP019290.1\|AXX60939.1\|2868463_2869180_-\|Periplasmic-protein	gnl\|CDD\|225414	COG2859, COG2859, Uncharacterized protein conserved in bacteria [Function unknown].	4.60751e-69
CP019290.1\|AXX60940.1\|2869580_2871338_+\|Putative-hemolysin	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	2.85785e-75
CP019290.1\|AXX60935.1\|2861955_2865324_-\|CRISPR-associated-helicase-Cas3,-Yersinia-type	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
CP019290.1\|AXX60934.1\|2860463_2861726_-\|CRISPR-associated-protein,-Csy1-family	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	1.73359e-125
CP019290.1\|AXX60927.1\|2853413_2853881_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	9.91615e-72
CP019290.1\|AXX60936.1\|2865320_2866310_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.53581e-171
CP019290.1\|AXX60924.1\|2852151_2852490_+\|protein-of-unknown-function-DUF1232	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	7.19164e-25

>CP019290.1|AXX60930.1|2855298_2855970_+|hypothetical-protein
MTIVHVICEGQTEEAFVKELLVEPFALKGIYLMPGLIGRPGHKGGNFKFERLAPDIEKRLLADQQCYCTTFFDFYGLPESFPGKNAVDANAPVAVKAQILQNAFAEKLTEKIGANAMRRFIPYVQMYEFEALLFSDPTKMAQGMDKIELETAFTEIANSFDSPEHINNSPQTAPSKRIEKHILGYEKPLLGTLAALEVGLDTMREKCPLFDTWLKNIENLTNA
>CP019290.1|AXX60929.1|2854198_2855302_+|ABC-transport-protein,-ATP-binding-subunit
MSKIDRLTIQGFKSIRSLDKLQLNNLNVLIGANGVGKSNFVSYFRMLHELVEGRLQVWTSKQGGADRVLSYGVKETQKLHTTIRFGVNGYSADLEPTTDDNFTFSSEKLYFDGPFFGVTEPNLGAGHKESNLKKEMQSGTSSKVASFCYSAISAWKVFHFHDTSDTAAVKRLGAVHDNEYLRSDASNLAAYLFKLQRENSEVYAQICKTVRLAVPFFDDFVLKPIQLASGEEQIRLLWKQADSDYPLWPSQLSDGSIRFICLVTALLQPNPPSTIIIDEPELGLHPYAITLLGALLRSASKRMQVIVSTQSVPLLNEFELDDLIVVEREEGASTFKRLDADKFRTWLDDYSVGELWEKNIIGGRPSK
>CP019290.1|AXX60928.1|2854023_2854224_-|hypothetical-protein
MVNLSILLIGFLFSDYDVLLIEWLVDLAELSVFRLMDDYTSQPSLSALFSLFSQSNSDGLKIVHQV
>CP019290.1|AXX60927.1|2853413_2853881_-|DNA-repair-protein-RadC
MRENNYYFDGPVTADRVLDAAAEILAARALRGDQYCNPEATKTYLSCKLKHHEREVFAVMFLDNQHRLIAFEELFFGTIDSASVYPREVLKAALKVNAAALIFAHNHPSGDATPSQADKQITQRLKEALALVDIRVLDHIVVGDSAISFAERGLL
>CP019290.1|AXX60926.1|2852967_2853417_-|hypothetical-protein
MIQKTSGELELLDGFHRALLLVIQRYSIPPQAQRMVLNCRQRRYYQTGQGLHPIEIQFRRTSASEDWQVVCLASFSYSENKPSEMEPELYFHLFNLWCYQPDSGAASLAHPQVKALLDTWLNALSRHLTQSLFDDIQLSIIQTFDEHHS
>CP019290.1|AXX60925.1|2852497_2852929_-|hypothetical-protein
MSILNFTPSVLPVSNKLLTLLNQHCHASMESTQSTSHALSIHFRDKSYSAEEGGYHPVEIGLNIVNGKTVDILYITDFAYMGNYYLELERCIDFDFGNQVAFTVATGWQSIRSPGIDELYQMWEQNFLQCVEWECYDDIQISH
>CP019290.1|AXX60924.1|2852151_2852490_+|protein-of-unknown-function-DUF1232
MQDTQHQEHYSEQSFWDTLKRYAKKAGREVIETALILYYCAKDSDTPRWAKTAILSALGYFVLPIDAIPDVLVGVGYSDDIGVLMAALTSVGAHVKQEHKQEAKQQLEVWLD
>CP019290.1|AXX60923.1|2851760_2852012_-|hypothetical-protein
MGFWDNVGKLAKAGAQAGAKMASDTYGDMKEAQADAARKSDDQLARTIANRSGGTWAIGAARQELKSRGYSDDAIQSLVNRHR
>CP019290.1|AXX60922.1|2850611_2851604_-|WYL-domain-containing-protein
MRLKIKPSMNDTKLNRSQHYIQLVLEIYKRIPNSRKITAKEIQQQLSEVGIVRSERTIQRNLTDIAQFFDDVDVDMRDKPFGYSRRSRHLLSHGPQEAVLLSLAENYLRYLLPVNLMKTLDTVFNDAKQHLFPTTSNVKERQWLKKVRFVSEGVPLLPPHIDNEIFEKVSYALFHNRYLSLCYTNANLEQKSKEVMPLGLAQQGSRLYLVCRFRGHINERSLALHRIHKASISTFDFAYPSDFDLERYDLDGRFYFGEGEEIRLSFCIGRESGYHLLETPLSMDQHVELIDGGYQVTATVIDSLQLDRWLRGFGDEVWSIAKEECTTKIA
>CP019290.1|AXX60921.1|2850406_2850595_+|Transcriptional-regulator
MRLIRLKEVLDNTGLSRAYIYKLMAEGKFPKSVSLGSRSVAWVESEVQDWILERVAERDERC
>CP019290.1|AXX60931.1|2857888_2858527_-|CRISPR-associated-protein,-Csy4-family
MNYYQEMTLLPDADIALGFLWQNVFQQVHIALVEHKVASNQSLVAVGFPDYRQAKFPLGAKLRLFAKEQATLEKLAIHRWLTRLEDYVHIKGIKPVPNDVTYVSFVRKQVKSPERIERDMQQKAVLWAAKSGKPLVECLADLQQSKPTALCSLPFIYLHSQQTKQRSPDKNSKFPLFIEMQQQSTSQDGSFDCYGLSSKANGQSMLATVPHF
>CP019290.1|AXX60932.1|2858536_2859568_-|CRISPR-associated-protein,-Csy3-family
MAKNNDIASVLAFEKKLVPSDGYLFGCQWETKEQATPLALQEKSVRGTISNRLKAAVKNDPAKLNAEVEKANLQRVDACALGQDHDTLKLHFTLKVLGGLAQPSACNNALFKQSYSAAVSQYITKYGCFELAKRYATNLANARFLWRNRVGAEEIEVQVKALNKGAEQAWTFNAKQFSTRHFDHNDSQINSLANRIAHVLASETDHLMLQIDCYAKVGKAQEVYPSEELVLDKGNSKTKKSKILYAVNEHAAMHSQKIGNALRSIDTWYPDYASEGQSAGAIAIEPYGAVTNLGKAFRTPKDKQDFYTFFDKWARGESLPREEDEHYVMAVLVRGGVFGESDK
>CP019290.1|AXX60933.1|2859579_2860467_-|CRISPR-associated-protein,-Csy2-family
MNVLILPHLKIHNANALSSPFTIGFPAMTAWLGFVHALERKLSQAGLSDLMLHSAAVVSHRCDVQTHKGEGDFVHSIIGTANPLDKDGSRSAFIEEARCHLDVSLVIEWSGNEDQVQQPEFTQQLQAVIVTMKVAGGDVLSVGKPSVKSVITQDDTAQVLRQLMPGYVLIERRDLMIEAMQQGADAIDALLGYLTVHHRCEQLEDQSVVWHSQRKTSGWIVPIATGFQGISPLGEAKNQRDSSVPHRFAESVVTLGEFVMVHKIKHLDDILWQYHPDLENDLYLCQPVNAINEHQ
>CP019290.1|AXX60934.1|2860463_2861726_-|CRISPR-associated-protein,-Csy1-family
MIDPAIAAFFAERKEAWLKKNISAAMPDAEVLEKQQECEQNFLLDNWLPDAAKRAGQISVASHPCTFSHPSARKNKNGYVSSIIAKNKPRIDGFLRSGNVSVEPDALGNAAALDVYKFLSLEMSDQRSLLVHIEQESELARQLLDIPSCEYQALRDGFLKMVDSDQASVSSSKIKQVYFPIADGEYHLLSLLTHSGHLFELRKRLDALRFGDAVKEARECKKTNHFHPAGYQEIFGLTTIGFGGTKPQNISVLNNQNAGKAHLLASIPPELTPRDIRLPRTDFFKESFTAWQAKEVLESLHRLFLTDYNNINLRDGRDYRIQQYVDLVIEKMWQVRLFLEEYSGELSSALPLEQKIWLYPEFAEQRQQEDEWLDKIIRHIARGLINHYSRSKVIANPVTMADQELLAIEEVVASNKENLR
>CP019290.1|AXX60935.1|2861955_2865324_-|CRISPR-associated-helicase-Cas3,-Yersinia-type
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLRQTASRSTAVSCRWIRSRSRSQFLWVVGNKKKFNAEGYVPVNSTEKDLLNSEFENDWKYLPLIKAITGMAALLHDWGKASLLFQEKLNPEIKNKHKGDPLRHEWISCLLFQQWISNQNHERLDEVWLNALINQGIDETCFKTKVLQKEKALAELPTAAALIAWLIVSHHRLPLPKEKDLCDRQREVDNSSLADLLARITPAWGYENRFDEYNALLPKCFEFPLGLLSNSSIWLAELKRRAKDLLHYLPLLDQAINDGSWRGILHHARLCLMLGDHYYSSQPNDHQWKTSIDLYANTDPTTKARKQKLDEHLVNVAKVAVKTVQLLPFFETEPLKATELGELAPKANTPKAFRWQDKAVRKINEWREHTEDKSQGYFVVNMASTGCGKTIANAKIMQALSEEGESLRFILALGLRTLTLQTGDEYKERLKLQESDLAVLIGSKAISELHKSGKAVEKDDIEPEQADAGSESLESLQDENDVLDWQGVLPEEELTTVLTKEKDRKLLYAPVLVCTIDHIMASTETKRGGRYILPCLRLMSSDLVIDEIDDFTGDDLIAIGRLVHLAAMLGRKVMISSATIPPDLALGLYNAYRQGWKVFAASRDRVSTVNCVYVDEFSADVQMVGCDDADLAAYEAFQQRFVSKRVDKLKQQVAKRKADIIPCIKHNEQPLEEQYFETVKQAVLAKHQHHNTLEPESQIRVSFGVVRVANIQPCVELTQYLLSCEWPADTEVRCMAYHSQQVLLLRHEQEKHLDQVLKRKEKSGELPKAFAHPVIREHLTVCQAKNLIFILVATPVEEVGRDHDFDWAVIEPSSFRSIIQMAGRVRRHRDGEIKEPNIGLLQYNVKGFRGGAERVFNHPGYETDSATQLATHDLCELVDETSLLQAVNAIVRIQKRAVLEPRNNLADLEHFATAKTLGTDQIGKPQQANISRQERYSRNRRSRSPQSCWHEHLHGHIHGYWWLTALPQYFKRFRKSEPTVQIYLVKKARSIEFCLPDEGMPSIDEVLNIKHLPLPPTQQQKLWLQRDYSELVSLYSPSPEQEFATSVRYGEISFIYREGNQQYSYNDQLGLVRTC
>CP019290.1|AXX60936.1|2865320_2866310_-|CRISPR-associated-protein-Cas1
MDDISPSDLKVILHSKRANMYYLEYCRVMQKDGRVLYLTEADKENLYFNIPIANTTVLMLGNGTSITQAAMRMLSQAGVLVGFCGGGGTPLHMACEVEWFTPQSEYRPTEYLQGWLSFWFDDEKRLAAAKQFQNARIDYLQRVWRSDRELTHEKFNLQDEVIKQSLDTFHQRTEAASKPADLLLTEAQLTKALYKYAANNTGKEGFTRQHQPDKKSTDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDIADLIKDAIVLPWAFVCAKENASEQEFRQQILQAFIEHKALDYMFDTVKHVALQGKEKEEREAHQL
>CP019290.1|AXX60937.1|2866424_2867219_-|Transcriptional-regulator
MLALWQGYVRNKDLVDQFSITRQQAYQDIRAYQEQHPERLKKMVSGPYQFSAQYLSEAPKHSLEHYLQWLSTGHFYAPQSSFNAALGEQCSVPQRYVAPQVIAALTAAIRQQKRLELGYVSLSNPEWEGRIFHPHTLVKTGLRWHVRGYCEKSQGYRDLVLSRCRGDVELLDASEHTKEDDRVWNTQVDLIFAPDPRLNDEQKEVIAHDYQMENGQLRITTRAALVDYLLKEMQVKTHYLEGTPEAQQLILVNPRDVKPWLFER
>CP019290.1|AXX60938.1|2867370_2867895_-|phage-integrase-family-protein
MIECGQRISALLEMRWSEVDLQEKVWLLPASSEDRHTKSQESRKVPLSDYLLALLKEQRESVPSKWKLVWPQLLADKVQEPAAVRALIKRNLPEDFERFSPHDLRRTFISRCSEMGLDIVAIEKTVGHQLPGMLRVYNHHDYLEEQLVVLQAWGEKLQSLTVANVVPLSASKSA
>CP019290.1|AXX60939.1|2868463_2869180_-|Periplasmic-protein
MREMTTKAALILGASLIVGLGVLGYLVQQTAIQYKALDRIVTVKGLSEREYPADTVIWPIRYTVASNDIQALFEQVDAQAELITAFLAERELSDSVQFSAPSVIDKKAQQYGGEANADYRYLAIQTITVYSNKVDSVRQAISLIGQLGKKGIVFNQDAYDNPIVYSFTRLNEIKPEMIEEATHNAREVAEKFAKDSNSSLGKIRTASQGQFSIMDRDHNTPHIKRIRVVSTVQYYLSD
>CP019290.1|AXX60940.1|2869580_2871338_+|Putative-hemolysin
MAINSPFRLPRKTPFGIGENVAEWMTGLSKLDKFYAQRPPHCDTQTFLRYTLEVLGIDYQIVKGSLANVPQIGPTVVVANHPLGCVEGVILAELLLMMREDVQILANQYLKTVPELDTLFIGVDVFDSQQAAKSNMKALRDANKHLAQGGLLLVFPAGEVSQLVDRKKKRLEDKEWSRSVSALIRRHKAHALPVFIDGQNSQRFYLAGKIHPLLRTLMLGRELLNKKQQAIPIAIGQPIKFKEVQHLTDEQLVSYLRLNTYLLSAEPPLHHRMDHDTNPPLAPIAEPLEKQKWLLDLAMLPEDALLLRQGNFSVYCTTAKYIPSILHEIGRQREINFRAVGEGTGYAIDIDRFDHHYHHLFVWDDENQHLVGAYRLGLVDKLLEKSGLDGLYSRTLFDYDAPFLTQLGQSIEMGRSVITSPYQRSMNALLLLWKGIATFVSQHPQYTHLFGPVSISNDYSPTARQLLAQSMTLHHYDAASAELVKPLNPIPDHHPKWNTSMLTALGDLQLLSRVISRIDEGKGVPVLLRQYLGLNGKLVCFNVDPAFNNALDGMIVVDLRDVPEKTLGKYMTPAKARHYLSLHQA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP019290_1	1.3\|2856234\|32\|CP019290\|CRISPRCasFinder,CRT	2856234-2856265	32	NC_009702	Vibrio vulnificus pC4602-1 plasmid	23944-23975	0	1.0
CP019290_1	1.3\|2856234\|32\|CP019290\|CRISPRCasFinder,CRT	2856234-2856265	32	NZ_CP012741	Vibrio vulnificus strain FORC_017 plasmid unnamed, complete sequence	33165-33196	0	1.0
CP019290_1	1.3\|2856234\|32\|CP019290\|CRISPRCasFinder,CRT	2856234-2856265	32	NC_005128	Vibrio vulnificus YJ016 plasmid pYJ016, complete sequence	5755-5786	1	0.969
CP019290_1	1.4\|2856294\|32\|CP019290\|CRISPRCasFinder,CRT	2856294-2856325	32	NZ_CP018299	Photobacterium damselae strain Phdp Wu-1 plasmid plas1, complete sequence	37579-37610	2	0.938
CP019290_1	1.23\|2857434\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857434-2857465	32	MG592590	Vibrio phage 1.223.O._10N.261.48.A9, partial genome	27377-27408	2	0.938
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	KT898134	Aeromonas phage phiARM81mr, complete genome	26494-26525	3	0.906
CP019290_1	1.23\|2857434\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857434-2857465	32	MN956515	Vibrio phage V039C, complete genome	11781-11812	3	0.906
CP019290_1	1.23\|2857434\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857434-2857465	32	MN922296	Vibrio phage phiV039C, complete genome	11781-11812	3	0.906
CP019290_1	1.23\|2857434\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857434-2857465	32	MG592398	Vibrio phage 1.013.O._10N.286.54.F9, partial genome	42915-42946	3	0.906
CP019290_1	1.23\|2857434\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857434-2857465	32	MG592413	Vibrio phage 1.029.O._10N.261.55.A7, partial genome	33658-33689	3	0.906
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	NC_006552	Pseudomonas phage F116, complete genome	23916-23947	5	0.844
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	AY625898	Pseudomonas aeruginosa phage F116, complete genome	23916-23947	5	0.844
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	LT603684	Pseudomonas phage phiC725A genome assembly	24247-24278	5	0.844
CP019290_1	1.6\|2856414\|32\|CP019290\|CRISPRCasFinder,CRT	2856414-2856445	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1109125-1109156	7	0.781
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	MN304822	Phage 64_12, partial genome	27007-27038	7	0.781
CP019290_1	1.11\|2856714\|32\|CP019290\|CRISPRCasFinder,CRT	2856714-2856745	32	NZ_CP046724	Pantoea agglomerans strain ASB05 plasmid pASB05p2, complete sequence	71193-71224	7	0.781
CP019290_1	1.11\|2856714\|32\|CP019290\|CRISPRCasFinder,CRT	2856714-2856745	32	NZ_CP034471	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_2, complete sequence	209336-209367	7	0.781
CP019290_1	1.11\|2856714\|32\|CP019290\|CRISPRCasFinder,CRT	2856714-2856745	32	NZ_CP034150	Pantoea agglomerans strain L15 plasmid pPagL15_2, complete sequence	71150-71181	7	0.781
CP019290_1	1.11\|2856714\|32\|CP019290\|CRISPRCasFinder,CRT	2856714-2856745	32	NZ_CP034476	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_2, complete sequence	197797-197828	7	0.781
CP019290_1	1.11\|2856714\|32\|CP019290\|CRISPRCasFinder,CRT	2856714-2856745	32	NZ_CP031651	Pantoea agglomerans strain TH81 plasmid unnamed2, complete sequence	169094-169125	7	0.781
CP019290_1	1.22\|2857374\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857374-2857405	32	MN694637	Marine virus AFVG_250M580, complete genome	36970-37001	7	0.781
CP019290_1	1.1\|2856114\|32\|CP019290\|CRISPRCasFinder,CRT	2856114-2856145	32	KT588075	Acinetobacter phage Ab105-2phi, complete genome	4261-4292	8	0.75
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024377	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp23, complete sequence	8881-8912	8	0.75
CP019290_1	1.26\|2857614\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857614-2857645	32	NC_019754	Crinalium epipsammum PCC 9333 plasmid pCRI9333.03, complete sequence	16735-16766	8	0.75
CP019290_1	1.26\|2857614\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857614-2857645	32	NZ_CP013204	Paenibacillus sp. IHB B 3084 plasmid pHD01, complete sequence	68552-68583	8	0.75
CP019290_1	1.1\|2856114\|32\|CP019290\|CRISPRCasFinder,CRT	2856114-2856145	32	KT588073	Acinetobacter phage Ab105-3phi, partial genome	17751-17782	9	0.719
CP019290_1	1.1\|2856114\|32\|CP019290\|CRISPRCasFinder,CRT	2856114-2856145	32	MK340941	Acinetobacter phage AbTJ, complete genome	4202-4233	9	0.719
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	MN693840	Marine virus AFVG_250M262, complete genome	40753-40784	9	0.719
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	MN693764	Marine virus AFVG_250M260, complete genome	1245-1276	9	0.719
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	MN694215	Marine virus AFVG_250M156, complete genome	1231-1262	9	0.719
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	MN694023	Marine virus AFVG_250M259, complete genome	40392-40423	9	0.719
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	MN694629	Marine virus AFVG_250M263, complete genome	1247-1278	9	0.719
CP019290_1	1.7\|2856474\|32\|CP019290\|CRISPRCasFinder,CRT	2856474-2856505	32	MN693970	Marine virus AFVG_250M261, complete genome	40682-40713	9	0.719
CP019290_1	1.9\|2856594\|32\|CP019290\|CRISPRCasFinder,CRT	2856594-2856625	32	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	176096-176127	9	0.719
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	16624-16655	9	0.719
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024331	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-12	4673-4704	9	0.719
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	16673-16704	9	0.719
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	17103-17134	9	0.719
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024345	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-10	4527-4558	9	0.719
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	17195-17226	9	0.719
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	17138-17169	9	0.719
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024374	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp41, complete sequence	12987-13018	9	0.719
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024376	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp26, complete sequence	13023-13054	9	0.719
CP019290_1	1.17\|2857074\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857074-2857105	32	NZ_CP024377	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp23, complete sequence	17920-17951	9	0.719
CP019290_1	1.25\|2857554\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857554-2857585	32	MN694706	Marine virus AFVG_250M574, complete genome	18567-18598	9	0.719
CP019290_1	1.26\|2857614\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857614-2857645	32	NZ_CP019234	Bacillus thuringiensis strain YGd22-03 plasmid pYGD83, complete sequence	73350-73381	9	0.719
CP019290_1	1.8\|2856534\|32\|CP019290\|CRISPRCasFinder,CRT	2856534-2856565	32	NC_005893	Lactobacillus phage phiAT3, complete genome	36642-36673	10	0.688
CP019290_1	1.8\|2856534\|32\|CP019290\|CRISPRCasFinder,CRT	2856534-2856565	32	AY605066	Bacteriophage phi AT3, complete sequence	36642-36673	10	0.688
CP019290_1	1.15\|2856954\|32\|CP019290\|CRISPRCasFinder,CRT	2856954-2856985	32	NZ_CP010859	Marinovum algicola DG 898 plasmid pMaD4, complete sequence	91711-91742	10	0.688
CP019290_1	1.16\|2857014\|32\|CP019290\|CRISPRCasFinder,CRT	2857014-2857045	32	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	131271-131302	10	0.688
CP019290_1	1.21\|2857314\|32\|CP019290\|CRISPRCasFinder,CRT,PILER-CR	2857314-2857345	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1155838-1155869	10	0.688

1. spacer 1.3|2856234|32|CP019290|CRISPRCasFinder,CRT matches to NC_009702 (Vibrio vulnificus pC4602-1 plasmid) position: , mismatch: 0, identity: 1.0

aatacagttgcgacaaagtcgggggtgtttca	CRISPR spacer
aatacagttgcgacaaagtcgggggtgtttca	Protospacer
********************************

2. spacer 1.3|2856234|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP012741 (Vibrio vulnificus strain FORC_017 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aatacagttgcgacaaagtcgggggtgtttca	CRISPR spacer
aatacagttgcgacaaagtcgggggtgtttca	Protospacer
********************************

3. spacer 1.3|2856234|32|CP019290|CRISPRCasFinder,CRT matches to NC_005128 (Vibrio vulnificus YJ016 plasmid pYJ016, complete sequence) position: , mismatch: 1, identity: 0.969

aatacagttgcgacaaagtcgggggtgtttca	CRISPR spacer
aatacagttgcgacaaagtcgggggtgttgca	Protospacer
***************************** **

4. spacer 1.4|2856294|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP018299 (Photobacterium damselae strain Phdp Wu-1 plasmid plas1, complete sequence) position: , mismatch: 2, identity: 0.938

aatccatcattgattcgtgccttgatgcttat	CRISPR spacer
aatccatcattgattcatgccttgatgcttac	Protospacer
****************.**************.

5. spacer 1.23|2857434|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to MG592590 (Vibrio phage 1.223.O._10N.261.48.A9, partial genome) position: , mismatch: 2, identity: 0.938

cctaccacaacacaaagaagcatgcttgcatt	CRISPR spacer
cctaccacaacacaaagaggcttgcttgcatt	Protospacer
******************.** **********

6. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to KT898134 (Aeromonas phage phiARM81mr, complete genome) position: , mismatch: 3, identity: 0.906

atcctcaaagcgcgtcagctcggattctccac	CRISPR spacer
gtcctcaaggcgcgccagctcggattctccac	Protospacer
.*******.*****.*****************

7. spacer 1.23|2857434|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to MN956515 (Vibrio phage V039C, complete genome) position: , mismatch: 3, identity: 0.906

cctaccacaacacaaagaagcatgcttgcatt	CRISPR spacer
tctaccacaacacaaagaagcctgtttgcatt	Protospacer
.******************** **.*******

8. spacer 1.23|2857434|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to MN922296 (Vibrio phage phiV039C, complete genome) position: , mismatch: 3, identity: 0.906

cctaccacaacacaaagaagcatgcttgcatt	CRISPR spacer
tctaccacaacacaaagaagcctgtttgcatt	Protospacer
.******************** **.*******

9. spacer 1.23|2857434|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to MG592398 (Vibrio phage 1.013.O._10N.286.54.F9, partial genome) position: , mismatch: 3, identity: 0.906

cctaccacaacacaaagaagcatgcttgcatt	CRISPR spacer
cctaccacaacacaaagaggcttgcttgcact	Protospacer
******************.** ********.*

10. spacer 1.23|2857434|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to MG592413 (Vibrio phage 1.029.O._10N.261.55.A7, partial genome) position: , mismatch: 3, identity: 0.906

cctaccacaacacaaagaagcatgcttgcatt	CRISPR spacer
cctaccacaacacaaagaggcttgcttgcact	Protospacer
******************.** ********.*

11. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to NC_006552 (Pseudomonas phage F116, complete genome) position: , mismatch: 5, identity: 0.844

atcctcaaagcgcgtcagctcggattctccac	CRISPR spacer
atcctcaaggcgcgtcagctcggctttacgac	Protospacer
********.************** **. * **

12. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to AY625898 (Pseudomonas aeruginosa phage F116, complete genome) position: , mismatch: 5, identity: 0.844

atcctcaaagcgcgtcagctcggattctccac	CRISPR spacer
atcctcaaggcgcgtcagctcggctttacgac	Protospacer
********.************** **. * **

13. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to LT603684 (Pseudomonas phage phiC725A genome assembly) position: , mismatch: 5, identity: 0.844

atcctcaaagcgcgtcagctcggattctccac	CRISPR spacer
atcctcaaggcgcgtcagctcggctttacgac	Protospacer
********.************** **. * **

14. spacer 1.6|2856414|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 7, identity: 0.781

cttatcttcgcatctacgagcgt----gatgcaaat	CRISPR spacer
ctcatcttcgcatcaacgagcgtggacggtgc----	Protospacer
**.*********** ********    *.***

15. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to MN304822 (Phage 64_12, partial genome) position: , mismatch: 7, identity: 0.781

atcctcaaagcgcgtcagctcggattctccac---	CRISPR spacer
atcctcaaggcgcgtcagatcgg---cgcgacgct	Protospacer
********.********* ****   * * **

16. spacer 1.11|2856714|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP046724 (Pantoea agglomerans strain ASB05 plasmid pASB05p2, complete sequence) position: , mismatch: 7, identity: 0.781

ggtaaaaaacggcatcactcgcggagctaatg	CRISPR spacer
gctaaaaaacggccacactcgcggaacatatt	Protospacer
* ***********  **********.*  **

17. spacer 1.11|2856714|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP034471 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_2, complete sequence) position: , mismatch: 7, identity: 0.781

ggtaaaaaacggcatcactcgcggagctaatg	CRISPR spacer
gctaaaaaacggccacactcgcggaacatatt	Protospacer
* ***********  **********.*  **

18. spacer 1.11|2856714|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP034150 (Pantoea agglomerans strain L15 plasmid pPagL15_2, complete sequence) position: , mismatch: 7, identity: 0.781

ggtaaaaaacggcatcactcgcggagctaatg	CRISPR spacer
gctaaaaaacggccacactcgcggaacatatt	Protospacer
* ***********  **********.*  **

19. spacer 1.11|2856714|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP034476 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_2, complete sequence) position: , mismatch: 7, identity: 0.781

ggtaaaaaacggcatcactcgcggagctaatg	CRISPR spacer
gctaaaaaacggccacactcgcggaacatatt	Protospacer
* ***********  **********.*  **

20. spacer 1.11|2856714|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP031651 (Pantoea agglomerans strain TH81 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ggtaaaaaacggcatcactcgcggagctaatg	CRISPR spacer
gctaaaaaacggccacactcgcggaacatatt	Protospacer
* ***********  **********.*  **

21. spacer 1.22|2857374|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to MN694637 (Marine virus AFVG_250M580, complete genome) position: , mismatch: 7, identity: 0.781

aaagtcacgcacttgattacatgtaccgaaaa	CRISPR spacer
tatataaagcacttgattacctggaccgaaaa	Protospacer
 * .* * ************ ** ********

22. spacer 1.1|2856114|32|CP019290|CRISPRCasFinder,CRT matches to KT588075 (Acinetobacter phage Ab105-2phi, complete genome) position: , mismatch: 8, identity: 0.75

acgttaagcctttcggcggtgaaacccgtgaa	CRISPR spacer
actctggtgctttaggcggtgaaaccggtgaa	Protospacer
** .*..  **** ************ *****

23. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024377 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp23, complete sequence) position: , mismatch: 8, identity: 0.75

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
gttcagtagaaatcccttctttattctctaat	Protospacer
* * *. . ************ ** *******

24. spacer 1.26|2857614|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NC_019754 (Crinalium epipsammum PCC 9333 plasmid pCRI9333.03, complete sequence) position: , mismatch: 8, identity: 0.75

ttggttttagaccgtgcaatttctttcgttaa	CRISPR spacer
ttggttttagaccctgcaaattcttcttccag	Protospacer
************* ***** *****.. ..*.

25. spacer 1.26|2857614|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013204 (Paenibacillus sp. IHB B 3084 plasmid pHD01, complete sequence) position: , mismatch: 8, identity: 0.75

ttggttttagaccgtgcaatttctttcgttaa	CRISPR spacer
tgcgttataaaccgtgcaatttctttccaata	Protospacer
*  *** **.*****************    *

26. spacer 1.1|2856114|32|CP019290|CRISPRCasFinder,CRT matches to KT588073 (Acinetobacter phage Ab105-3phi, partial genome) position: , mismatch: 9, identity: 0.719

acgttaagcctttcggcggtgaaacccgtgaa	CRISPR spacer
actcaggtgctttaggcggtgaaaccggtgaa	Protospacer
** . ..  **** ************ *****

27. spacer 1.1|2856114|32|CP019290|CRISPRCasFinder,CRT matches to MK340941 (Acinetobacter phage AbTJ, complete genome) position: , mismatch: 9, identity: 0.719

acgttaagcctttcggcggtgaaacccgtgaa	CRISPR spacer
actcaggtgctttaggcggtgaaaccggtgaa	Protospacer
** . ..  **** ************ *****

28. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to MN693840 (Marine virus AFVG_250M262, complete genome) position: , mismatch: 9, identity: 0.719

atcctcaaagcgcgtcagctcggattctccac	CRISPR spacer
gtgttaaaggcgcgtcagctcggtttctcgtg	Protospacer
.* .* **.************** *****

29. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to MN693764 (Marine virus AFVG_250M260, complete genome) position: , mismatch: 9, identity: 0.719

atcctcaaagcgcgtcagctcggattctccac	CRISPR spacer
gtgttaaaggcgcgtcagctcggtttctcgtg	Protospacer
.* .* **.************** *****

30. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to MN694215 (Marine virus AFVG_250M156, complete genome) position: , mismatch: 9, identity: 0.719

atcctcaaagcgcgtcagctcggattctccac	CRISPR spacer
gtgttaaaggcgcgtcagctcggtttctcgtg	Protospacer
.* .* **.************** *****

31. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to MN694023 (Marine virus AFVG_250M259, complete genome) position: , mismatch: 9, identity: 0.719

atcctcaaagcgcgtcagctcggattctccac	CRISPR spacer
gtgttaaaggcgcgtcagctcggtttctcgtg	Protospacer
.* .* **.************** *****

32. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to MN694629 (Marine virus AFVG_250M263, complete genome) position: , mismatch: 9, identity: 0.719

atcctcaaagcgcgtcagctcggattctccac	CRISPR spacer
gtgttaaaggcgcgtcagctcggtttctcgtg	Protospacer
.* .* **.************** *****

33. spacer 1.7|2856474|32|CP019290|CRISPRCasFinder,CRT matches to MN693970 (Marine virus AFVG_250M261, complete genome) position: , mismatch: 9, identity: 0.719

atcctcaaagcgcgtcagctcggattctccac	CRISPR spacer
gtgttaaaggcgcgtcagctcggtttctcgtg	Protospacer
.* .* **.************** *****

34. spacer 1.9|2856594|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 9, identity: 0.719

---cttaaccttcttcgctttttcttgctccatta	CRISPR spacer
aggct---gcttcttcgcttcttcttgccccacgt	Protospacer
   **    ***********.*******.***.

35. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 9, identity: 0.719

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
attcagtagaaatcccttctttattctctaat	Protospacer
. * *. . ************ ** *******

36. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024331 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-12) position: , mismatch: 9, identity: 0.719

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
attcagtagaaatcccttctttattctctaat	Protospacer
. * *. . ************ ** *******

37. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 9, identity: 0.719

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
attcagtagaaatcccttctttattctctaat	Protospacer
. * *. . ************ ** *******

38. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 9, identity: 0.719

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
attcagtagaaatcccttctttattctctaat	Protospacer
. * *. . ************ ** *******

39. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024345 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-10) position: , mismatch: 9, identity: 0.719

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
attcagtagaaatcccttctttattctctaat	Protospacer
. * *. . ************ ** *******

40. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 9, identity: 0.719

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
attcagtagaaatcccttctttattctctaat	Protospacer
. * *. . ************ ** *******

41. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 9, identity: 0.719

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
attcagtagaaatcccttctttattctctaat	Protospacer
. * *. . ************ ** *******

42. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024374 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp41, complete sequence) position: , mismatch: 9, identity: 0.719

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
attcagtagaaatcccttctttattctctaat	Protospacer
. * *. . ************ ** *******

43. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024376 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp26, complete sequence) position: , mismatch: 9, identity: 0.719

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
attcagtagaaatcccttctttattctctaat	Protospacer
. * *. . ************ ** *******

44. spacer 1.17|2857074|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024377 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp23, complete sequence) position: , mismatch: 9, identity: 0.719

gataaaggcaaatcccttcttgatgctctaat	CRISPR spacer
attcagtagaaatcccttctttattctctaat	Protospacer
. * *. . ************ ** *******

45. spacer 1.25|2857554|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to MN694706 (Marine virus AFVG_250M574, complete genome) position: , mismatch: 9, identity: 0.719

gctgactgtatttgctgtaaacgtcgctatca	CRISPR spacer
catcacagtatttgctgtaaaagtcgccgttg	Protospacer
  * ** ************** *****..*..

46. spacer 1.26|2857614|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019234 (Bacillus thuringiensis strain YGd22-03 plasmid pYGD83, complete sequence) position: , mismatch: 9, identity: 0.719

ttggttttagaccgtgcaatttctttcgttaa	CRISPR spacer
gaagttttagaccgtgctgtttctttagatgg	Protospacer
  .************** .******* * *..

47. spacer 1.8|2856534|32|CP019290|CRISPRCasFinder,CRT matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 10, identity: 0.688

atcttcggtcaacatgttagtgaacgaacgat	CRISPR spacer
tcgttcggtcaacatgtaagtgagcggctaac	Protospacer
 . ************** *****.**. ..*.

48. spacer 1.8|2856534|32|CP019290|CRISPRCasFinder,CRT matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcggtcaacatgttagtgaacgaacgat	CRISPR spacer
tcgttcggtcaacatgtaagtgagcggctaac	Protospacer
 . ************** *****.**. ..*.

49. spacer 1.15|2856954|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP010859 (Marinovum algicola DG 898 plasmid pMaD4, complete sequence) position: , mismatch: 10, identity: 0.688

aagcgcagacaggataagcgcaggctgctaga	CRISPR spacer
cagcgcaaacaggacaagcgcaggccagagcg	Protospacer
 ******.******.**********..  . .

50. spacer 1.16|2857014|32|CP019290|CRISPRCasFinder,CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 10, identity: 0.688

gcataaagacgctcagcgccagcagcggattt	CRISPR spacer
cgacaaagacgatcagcgccagcaccgcgccg	Protospacer
  *.******* ************ ** ...

51. spacer 1.21|2857314|32|CP019290|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtttcgcaagctttcatccttgattagata	CRISPR spacer
gcatatcgcaagctttcatccttgtcggccct	Protospacer
**.* ******************* . .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

527222 : 540331

uncultured_Mediterranean_phage(22.22%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX58798.1\|527222_528524_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	1.5e-131	58.5
AXX58799.1\|528768_529050_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA
AXX58800.1\|529049_529763_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AXX58801.1\|529759_530236_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AXX58802.1\|530271_531315_+\|tRNA	tRNA pseudouridine 13 synthase	NA	NA	NA	NA
AXX58803.1\|531320_532088_+	5-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-68	51.4
AXX58804.1\|532090_532717_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.1e-38	53.6
AXX58805.1\|532760_533657_+	Lipoprotein NlpD	I3PV79	Clostridium_phage	1.5e-13	34.1
AXX58806.1\|533737_534730_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	4.5e-35	34.5
AXX58807.1\|534805_537367_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.3e-30	22.8
AXX58808.1\|537450_537954_+	C-terminal domain of CinA type S	B5TK85	Pseudomonas_phage	1.4e-24	43.9
AXX58809.1\|538087_539134_+	RecA protein	A0A2D1GPX2	Mycobacterium_phage	5.9e-110	59.4
AXX58810.1\|539136_539454_+	hypothetical protein	NA	NA	NA	NA
AXX58811.1\|539478_539763_+	Mobile element protein	NA	NA	NA	NA
AXX58812.1\|539764_540331_+	Mobile element protein	A0A0P0I4A4	Acinetobacter_phage	4.5e-32	43.1

DBSCAN-SWA_2

1649436 : 1658839

Vibrio_phage(90.0%)

integrase

attL 1646223:1646236|attR 1653845:1653858

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1646223:1646236	attL	NA	NA	NA	NA
AXX59852.1\|1649436_1650906_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.4e-45	31.9
AXX59853.1\|1651056_1651413_-	antirepressor	Q858Q3	Vibrio_phage	6.3e-24	56.8
AXX59854.1\|1651605_1651872_+	hypothetical protein	NA	NA	NA	NA
AXX59855.1\|1651868_1652060_+	hypothetical protein	NA	NA	NA	NA
AXX59856.1\|1652062_1652263_+	Phage protein	C3W4P3	Vibrio_phage	1.8e-20	69.2
AXX59857.1\|1652252_1653320_+	RstA phage-related replication protein	Q64EV8	Vibrio_phage	2.2e-152	72.0
AXX59858.1\|1653321_1653672_+\|integrase	Phage integrase	Q858R2	Vibrio_phage	5.6e-41	70.9
AXX59859.1\|1653674_1653908_+	hypothetical protein	G8IRU7	Vibrio_phage	7.8e-07	38.5
1653845:1653858	attR	NA	NA	NA	NA
AXX59860.1\|1653929_1654148_+	hypothetical protein	Q783U2	Vibrio_phage	5.2e-05	48.6
AXX59861.1\|1654264_1655713_+	Phage attachment protein	NA	NA	NA	NA
AXX59862.1\|1655736_1656069_+	Accessory cholera enterotoxin	R9TRT6	Vibrio_phage	6.3e-10	34.3
AXX59863.1\|1656072_1657488_+	Zona occludens toxin	Q783T9	Vibrio_phage	4.7e-86	40.0
AXX59864.1\|1657495_1657765_+	hypothetical protein	NA	NA	NA	NA
AXX59865.1\|1658467_1658839_-	regulator	Q9MCC4	Vibrio_phage	2.0e-41	67.2

DBSCAN-SWA_3

2537018 : 2543654

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX60648.1\|2537018_2537489_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-32	48.7
AXX60649.1\|2537664_2538774_-	3,4-dihydroxy-2-butanone 4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.9e-64	40.4
AXX60650.1\|2538871_2539528_-	Riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	3.6e-33	35.9
AXX60651.1\|2539529_2540636_-	Diaminohydroxyphosphoribosylaminopyrimidine deaminase	A0A1V0SE20	Indivirus	1.5e-42	33.3
AXX60652.1\|2540655_2541105_-	Ribonucleotide reductase transcriptional regulator NrdR	NA	NA	NA	NA
AXX60653.1\|2541305_2542556_-	Gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.0e-100	49.2
AXX60654.1\|2542586_2543654_-	Glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-61	39.8

DBSCAN-SWA_4

2620230 : 2627285

Powai_lake_megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX60721.1\|2620230_2620656_-	Nucleoside diphosphate kinase	A0A167REB2	Powai_lake_megavirus	5.1e-20	41.4
AXX60722.1\|2620719_2622018_-	Peptidase B	Q6GYZ8	Mycoplasma_phage	6.5e-34	32.8
AXX60723.1\|2622170_2622365_-	Fe-S assembly protein IscX	NA	NA	NA	NA
AXX60724.1\|2622446_2622785_-	Ferredoxin, 2Fe-2S	NA	NA	NA	NA
AXX60725.1\|2622796_2624650_-	Chaperone protein HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.1e-106	39.4
AXX60726.1\|2624671_2625187_-	Chaperone protein HscB	NA	NA	NA	NA
AXX60727.1\|2625247_2625571_-	Iron binding protein IscA for iron-sulfur cluster assembly	A0A2H4N7N5	Lake_Baikal_phage	1.4e-25	53.3
AXX60728.1\|2625643_2626027_-	Iron-sulfur cluster assembly scaffold protein IscU	A0A218MKD1	uncultured_virus	2.0e-52	77.4
AXX60729.1\|2626070_2627285_-	Cysteine desulfurase	A0A1X7C038	Faustovirus	3.7e-31	32.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP019291

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

911274 : 917724

Vibrio_phage(100.0%)

integrase

attL 911689:911703|attR 927100:927114

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX62069.1\|911274_911652_-	hypothetical protein	Q858Q3	Vibrio_phage	1.9e-42	69.4
911689:911703	attL	NA	NA	NA	NA
AXX62070.1\|911841_912087_+	hypothetical protein	A0A2I7RNI2	Vibrio_phage	7.7e-05	51.8
AXX62071.1\|912083_912275_+	hypothetical protein	NA	NA	NA	NA
AXX62072.1\|912277_912478_+	Phage protein	C3W4P3	Vibrio_phage	6.9e-20	67.7
AXX62073.1\|912467_913535_+	RstA phage-related replication protein	Q64EV8	Vibrio_phage	1.1e-151	71.2
AXX62074.1\|913536_913887_+\|integrase	Phage integrase	Q858R2	Vibrio_phage	1.1e-39	69.1
AXX62075.1\|913889_914135_+	hypothetical protein	G8IRU7	Vibrio_phage	2.2e-20	57.5
AXX62076.1\|914161_914368_+	hypothetical protein	R9TRU5	Vibrio_phage	1.6e-08	64.1
AXX62077.1\|914501_916010_+	Phage protein	G8IRU9	Vibrio_phage	1.9e-21	34.1
AXX62078.1\|916009_916354_+	Accessory cholera enterotoxin	Q64EV1	Vibrio_phage	5.3e-36	67.5
AXX62079.1\|916356_917724_+	Zona occludens toxin	Q64EV0	Vibrio_phage	9.2e-180	68.9
927100:927114	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP019292

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP019290

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP019291

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection