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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP032101 Arcobacter marinus strain JCM 15502 chromosome, complete genome 5 crisprs PrimPol,DEDDh,csa3,cas3 0 3 3 0

Results visualization

1. CP032101
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP032101_1 335597-335712 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP032101_2 911269-911413 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP032101_3 923947-924109 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP032101_7 2739657-2739745 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP032101_6 2738509-2738598 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP032101_4 4.2|1603138|30|CP032101|CRISPRCasFinder 1603138-1603167 30 NC_049466 Escherichia phage vB_EcoM_4HA13, complete genome 47894-47923 4 0.867
CP032101_4 4.2|1603138|30|CP032101|CRISPRCasFinder 1603138-1603167 30 MN018232 Synechococcus phage S-B43, complete genome 176059-176088 5 0.833
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 MK448913 Streptococcus phage Javan346, complete genome 31338-31367 6 0.8
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 MK448722 Streptococcus phage Javan269, complete genome 31316-31345 6 0.8
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 MK448907 Streptococcus phage Javan320, complete genome 31342-31371 6 0.8
CP032101_4 4.2|1603138|30|CP032101|CRISPRCasFinder 1603138-1603167 30 MN693032 Marine virus AFVG_117M42, complete genome 23905-23934 6 0.8
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 NZ_AP014824 Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence 38706-38735 7 0.767
CP032101_4 4.2|1603138|30|CP032101|CRISPRCasFinder 1603138-1603167 30 NC_008442 Borrelia duttonii plasmid DNA, complete sequence, strain: Ly 18333-18362 7 0.767
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 NZ_CP043057 Dolichospermum sp. UHCC 0315A plasmid pUHCC0315a, complete sequence 46615-46644 8 0.733
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 NZ_CP053290 Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence 38904-38933 8 0.733
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 NC_011655 Bacillus cereus AH187 plasmid pAH187_270, complete sequence 209758-209787 8 0.733
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 NC_005707 Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence 126523-126552 8 0.733
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 NC_010924 Bacillus cereus strain AH187 plasmid pCER270, complete sequence 266167-266196 8 0.733
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 CP045776 Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence 258592-258621 8 0.733
CP032101_4 4.1|1603084|30|CP032101|CRISPRCasFinder 1603084-1603113 30 NC_016792 Bacillus cereus NC7401 plasmid pNCcld, complete sequence 265036-265065 8 0.733
CP032101_4 4.2|1603138|30|CP032101|CRISPRCasFinder 1603138-1603167 30 NZ_CP042631 Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-4, complete sequence 23760-23789 8 0.733
CP032101_4 4.2|1603138|30|CP032101|CRISPRCasFinder 1603138-1603167 30 MK799832 Synechococcus phage S-B05, complete genome 152738-152767 8 0.733
CP032101_5 5.1|1620945|31|CP032101|CRISPRCasFinder 1620945-1620975 31 MW117966 Synechococcus phage S-H9-1, complete genome 78687-78717 8 0.742
CP032101_5 5.1|1620945|31|CP032101|CRISPRCasFinder 1620945-1620975 31 KU686211 Synechococcus phage S-WAM2 isolate 0810PA29, complete genome 164606-164636 8 0.742
CP032101_5 5.1|1620945|31|CP032101|CRISPRCasFinder 1620945-1620975 31 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 232881-232911 8 0.742
CP032101_5 5.1|1620945|31|CP032101|CRISPRCasFinder 1620945-1620975 31 MN694161 Marine virus AFVG_250M528, complete genome 48768-48798 8 0.742
CP032101_5 5.1|1620945|31|CP032101|CRISPRCasFinder 1620945-1620975 31 MG198570 Lake Baikal phage Baikal-20-5m-C28, complete genome 154455-154485 8 0.742
CP032101_4 4.2|1603138|30|CP032101|CRISPRCasFinder 1603138-1603167 30 NC_048775 Aeromonas phage LAh_8, complete genome 57597-57626 9 0.7
CP032101_4 4.2|1603138|30|CP032101|CRISPRCasFinder 1603138-1603167 30 NC_048774 Aeromonas phage LAh_6, complete genome 19071-19100 9 0.7
CP032101_4 4.2|1603138|30|CP032101|CRISPRCasFinder 1603138-1603167 30 NC_048773 Aeromonas phage 4_4572, complete genome 37848-37877 9 0.7
CP032101_5 5.1|1620945|31|CP032101|CRISPRCasFinder 1620945-1620975 31 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 926810-926840 9 0.71
CP032101_5 5.1|1620945|31|CP032101|CRISPRCasFinder 1620945-1620975 31 NZ_KX711616 Bacillus subtilis strain 72 plasmid pBS72, complete sequence 11178-11208 9 0.71
CP032101_5 5.1|1620945|31|CP032101|CRISPRCasFinder 1620945-1620975 31 MH412654 Synechococcus phage S-T4, complete genome 141139-141169 10 0.677
CP032101_5 5.1|1620945|31|CP032101|CRISPRCasFinder 1620945-1620975 31 NZ_CP011133 Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence 212473-212503 10 0.677

1. spacer 4.2|1603138|30|CP032101|CRISPRCasFinder matches to NC_049466 (Escherichia phage vB_EcoM_4HA13, complete genome) position: , mismatch: 4, identity: 0.867

aatatcatcattagaaccaccatctaaata-	CRISPR spacer
aatatcattcttagaaccaccatc-aactac	Protospacer
********. ************** ** ** 

2. spacer 4.2|1603138|30|CP032101|CRISPRCasFinder matches to MN018232 (Synechococcus phage S-B43, complete genome) position: , mismatch: 5, identity: 0.833

-aatatcatcattagaaccaccatctaaata	CRISPR spacer
acaaatca-cattagaatcaccatctaaatc	Protospacer
  * **** ********.************ 

3. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to MK448913 (Streptococcus phage Javan346, complete genome) position: , mismatch: 6, identity: 0.8

actatcatttcctgttccaccaattaaagt----	CRISPR spacer
aatatcatttcctgatccacc----aaagtctag	Protospacer
* ************ ******    *****    

4. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to MK448722 (Streptococcus phage Javan269, complete genome) position: , mismatch: 6, identity: 0.8

actatcatttcctgttccaccaattaaagt----	CRISPR spacer
aatatcatttcctgatccacc----aaagtctag	Protospacer
* ************ ******    *****    

5. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to MK448907 (Streptococcus phage Javan320, complete genome) position: , mismatch: 6, identity: 0.8

actatcatttcctgttccaccaa---ttaaagt	CRISPR spacer
aatatcatttcctgatccaccaaaatctaa---	Protospacer
* ************ ********   .***   

6. spacer 4.2|1603138|30|CP032101|CRISPRCasFinder matches to MN693032 (Marine virus AFVG_117M42, complete genome) position: , mismatch: 6, identity: 0.8

aatatcatcattagaaccaccatctaaata-	CRISPR spacer
aatatcatcattagaagcagcat-tagctgg	Protospacer
**************** ** *** **. *. 

7. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to NZ_AP014824 (Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence) position: , mismatch: 7, identity: 0.767

actatcatttcctgttccaccaattaaagt	CRISPR spacer
ggtatcatttcctgttccacctatcatgga	Protospacer
. ******************* **.* .* 

8. spacer 4.2|1603138|30|CP032101|CRISPRCasFinder matches to NC_008442 (Borrelia duttonii plasmid DNA, complete sequence, strain: Ly) position: , mismatch: 7, identity: 0.767

aatatcatcattagaaccaccatctaaata	CRISPR spacer
aatatcaacattagaatcaccattttcaac	Protospacer
******* ********.******.*  *  

9. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to NZ_CP043057 (Dolichospermum sp. UHCC 0315A plasmid pUHCC0315a, complete sequence) position: , mismatch: 8, identity: 0.733

actatcatttcctgttccaccaattaaagt	CRISPR spacer
ttgatcatttccttgtccaccaattaacag	Protospacer
 . **********  ************ . 

10. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to NZ_CP053290 (Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

actatcatttcctgttccaccaattaaagt	CRISPR spacer
tgaacaatttcctgttcaacaaattaaaga	Protospacer
   *. *********** ** ******** 

11. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to NC_011655 (Bacillus cereus AH187 plasmid pAH187_270, complete sequence) position: , mismatch: 8, identity: 0.733

actatcatttcctgttccaccaattaaagt	CRISPR spacer
tgaacaatttcctgttcaacaaattaaaga	Protospacer
   *. *********** ** ******** 

12. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to NC_005707 (Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence) position: , mismatch: 8, identity: 0.733

actatcatttcctgttccaccaattaaagt	CRISPR spacer
tgaacaatttcctgttcaacaaattaaaga	Protospacer
   *. *********** ** ******** 

13. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to NC_010924 (Bacillus cereus strain AH187 plasmid pCER270, complete sequence) position: , mismatch: 8, identity: 0.733

actatcatttcctgttccaccaattaaagt	CRISPR spacer
tgaacaatttcctgttcaacaaattaaaga	Protospacer
   *. *********** ** ******** 

14. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to CP045776 (Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence) position: , mismatch: 8, identity: 0.733

actatcatttcctgttccaccaattaaagt	CRISPR spacer
tgaacaatttcctgttcaacaaattaaaga	Protospacer
   *. *********** ** ******** 

15. spacer 4.1|1603084|30|CP032101|CRISPRCasFinder matches to NC_016792 (Bacillus cereus NC7401 plasmid pNCcld, complete sequence) position: , mismatch: 8, identity: 0.733

actatcatttcctgttccaccaattaaagt	CRISPR spacer
tgaacaatttcctgttcaacaaattaaaga	Protospacer
   *. *********** ** ******** 

16. spacer 4.2|1603138|30|CP032101|CRISPRCasFinder matches to NZ_CP042631 (Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-4, complete sequence) position: , mismatch: 8, identity: 0.733

aatatcatcattagaaccaccatctaaata	CRISPR spacer
gtattcatcataagaaccaccagctaataa	Protospacer
.   ******* ********** ****  *

17. spacer 4.2|1603138|30|CP032101|CRISPRCasFinder matches to MK799832 (Synechococcus phage S-B05, complete genome) position: , mismatch: 8, identity: 0.733

aatatcatcattagaaccaccatctaaata	CRISPR spacer
acaaattacattagaatcaccatctaaatc	Protospacer
*  * .  ********.************ 

18. spacer 5.1|1620945|31|CP032101|CRISPRCasFinder matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 8, identity: 0.742

gttcatcatttccagcagcaccaattatttt	CRISPR spacer
tgttgtcattaccagcagcaccaataattac	Protospacer
  *..***** ************** *** .

19. spacer 5.1|1620945|31|CP032101|CRISPRCasFinder matches to KU686211 (Synechococcus phage S-WAM2 isolate 0810PA29, complete genome) position: , mismatch: 8, identity: 0.742

gttcatcatttccagcagcaccaattatttt	CRISPR spacer
tattgtcattgccagcagcaccaatgattac	Protospacer
  *..***** ************** *** .

20. spacer 5.1|1620945|31|CP032101|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.742

gttcatcatttccagcagcaccaattatttt	CRISPR spacer
cagcaatttttccatcagcaacaattatttt	Protospacer
   ** . ****** ***** **********

21. spacer 5.1|1620945|31|CP032101|CRISPRCasFinder matches to MN694161 (Marine virus AFVG_250M528, complete genome) position: , mismatch: 8, identity: 0.742

gttcatcatttccagcagcaccaattatttt	CRISPR spacer
ctacatcatttgcaacagcaccaattttacc	Protospacer
 * ******** **.*********** * ..

22. spacer 5.1|1620945|31|CP032101|CRISPRCasFinder matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 8, identity: 0.742

gttcatcatttccagcagcaccaattatttt	CRISPR spacer
cttcatcattaccaacagcaccaaaaaccat	Protospacer
 ********* ***.*********  *.. *

23. spacer 4.2|1603138|30|CP032101|CRISPRCasFinder matches to NC_048775 (Aeromonas phage LAh_8, complete genome) position: , mismatch: 9, identity: 0.7

aatatcatcattagaaccaccatctaaata	CRISPR spacer
ccaatcaccattagaaccaccatcagcctg	Protospacer
   ****.**************** .  *.

24. spacer 4.2|1603138|30|CP032101|CRISPRCasFinder matches to NC_048774 (Aeromonas phage LAh_6, complete genome) position: , mismatch: 9, identity: 0.7

aatatcatcattagaaccaccatctaaata	CRISPR spacer
ccaatcaccattagaaccaccatcagcctg	Protospacer
   ****.**************** .  *.

25. spacer 4.2|1603138|30|CP032101|CRISPRCasFinder matches to NC_048773 (Aeromonas phage 4_4572, complete genome) position: , mismatch: 9, identity: 0.7

aatatcatcattagaaccaccatctaaata	CRISPR spacer
ccaatcaccattagaaccaccatcagcctg	Protospacer
   ****.**************** .  *.

26. spacer 5.1|1620945|31|CP032101|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 9, identity: 0.71

gttcatcatttccagcagcaccaattatttt	CRISPR spacer
caattgcgtttctagtagcaccaattatttt	Protospacer
   .  *.****.**.***************

27. spacer 5.1|1620945|31|CP032101|CRISPRCasFinder matches to NZ_KX711616 (Bacillus subtilis strain 72 plasmid pBS72, complete sequence) position: , mismatch: 9, identity: 0.71

gttcatcatttccagcagcaccaattatttt	CRISPR spacer
tcggatcatccccagcagcaccaattaagta	Protospacer
 .  *****..****************  * 

28. spacer 5.1|1620945|31|CP032101|CRISPRCasFinder matches to MH412654 (Synechococcus phage S-T4, complete genome) position: , mismatch: 10, identity: 0.677

gttcatcatttccagcagcaccaattatttt	CRISPR spacer
cggtgacacttccaccagcaccaattattga	Protospacer
   .. **.***** **************  

29. spacer 5.1|1620945|31|CP032101|CRISPRCasFinder matches to NZ_CP011133 (Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

gttcatcatttccagcagcaccaattatttt	CRISPR spacer
aacggcgtttttcagcagcaccaattacttt	Protospacer
. . ..  ***.***************.***

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 367041 : 373903 9 Campylobacter_virus(33.33%) tRNA NA
DBSCAN-SWA_2 884147 : 895461 10 Paramecium_bursaria_Chlorella_virus(22.22%) NA NA
DBSCAN-SWA_3 1377395 : 1430523 54 Mamastrovirus(14.29%) plate,tRNA,integrase attL 1393613:1393628|attR 1435722:1435737
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage