CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023434	Aerococcaceae bacterium ZY16052 chromosome, complete genome	2 crisprs	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,RT,csa3,WYL	0	3	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023434_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023434_1

828439-828546

Orphan

Consensus_repeat	Method
AAAAAGTTCAAAAAGTGCTTGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023434_1

>merge|CP023434|1|828439-828546|CRISPRCasFinder
AAAAAGTTCAAAAAGTGCTTGACGGACAAAAGCGAAACATGGTATAGTAATACTTGTCGTTTCGAGAGCACCCCAAGAACTTCAAAAAAGTTCCAAAAGTGCTTGACG

>CP023434|1|1|828439-828546|CRISPRCasFinder
AAAAAGTTCAAAAAGTGCTTGACG	GACAAAAGCGAAACATGGTATAGTAATACTTGTCGTTTCGAGAGCACCCCAAGAACTTCA
AAAAAGTTCCAAAAGTGCTTGACG

Protein	Signature genes	Signature genes Name	Protein_function
CP023434.1\|AXY25263.1\|847516_848266_+\|siderophore-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226963
CP023434.1\|AXY25264.1\|848351_848837_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283241
CP023434.1\|AXY25255.1\|825192_825708_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224874
CP023434.1\|AXY25256.1\|825931_826519_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|365914
CP023434.1\|AXY25254.1\|824181_825180_-\|ferredoxin--NADP(+)-reductase	unknown	unknown	gnl\|CDD\|223566
CP023434.1\|AXY25267.1\|850821_852372_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225218
CP023434.1\|AXY25260.1\|844562_845525_+\|iron-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238560
CP023434.1\|AXY25268.1\|853054_853693_+\|RNA-polymerase-subunit-sigma	unknown	unknown	gnl\|CDD\|236233
CP023434.1\|AXY25249.1\|819948_821529_+\|multifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase	unknown	unknown	gnl\|CDD\|223808
CP023434.1\|AXY25252.1\|822903_823527_+\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|377811
CP023434.1\|AXY25262.1\|846513_847536_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226964
CP023434.1\|AXY25250.1\|821540_822128_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|368821
CP023434.1\|AXY25261.1\|845602_846511_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226965
CP023434.1\|AXY25251.1\|822130_822907_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
CP023434.1\|AXY25257.1\|826535_826946_+\|general-stress-protein	unknown	unknown	gnl\|CDD\|181215
CP023434.1\|AXY25265.1\|848946_849720_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
CP023434.1\|AXY25259.1\|836212_836749_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|183534
CP023434.1\|AXY25266.1\|849808_850492_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379233
CP023434.1\|AXY25253.1\|823597_824170_-\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|224186
CP023434.1\|AXY25258.1\|826960_828304_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504

Protein	Function_ID	Function_description	E-value
CP023434.1\|AXY25263.1\|847516_848266_+\|siderophore-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	4.96853e-125
CP023434.1\|AXY25264.1\|848351_848837_+\|hypothetical-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	0.000325035
CP023434.1\|AXY25255.1\|825192_825708_-\|hypothetical-protein	gnl\|CDD\|224874	COG1963, COG1963, Uncharacterized protein conserved in bacteria [Function unknown].	7.09028e-41
CP023434.1\|AXY25256.1\|825931_826519_+\|peptidylprolyl-isomerase	gnl\|CDD\|365914	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilized in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function.	9.66046e-69
CP023434.1\|AXY25254.1\|824181_825180_-\|ferredoxin--NADP(+)-reductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	1.48876e-73
CP023434.1\|AXY25267.1\|850821_852372_-\|hypothetical-protein	gnl\|CDD\|225218	COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown].	1.57652e-17
CP023434.1\|AXY25260.1\|844562_845525_+\|iron-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238560	cd01140, FatB, Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	6.27866e-74
CP023434.1\|AXY25268.1\|853054_853693_+\|RNA-polymerase-subunit-sigma	gnl\|CDD\|236233	PRK08311, PRK08311, RNA polymerase sigma factor SigI.	1.62196e-63
CP023434.1\|AXY25249.1\|819948_821529_+\|multifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase	gnl\|CDD\|223808	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism].	1.00834e-62
CP023434.1\|AXY25252.1\|822903_823527_+\|TIGR01906-family-membrane-protein	gnl\|CDD\|377811	pfam07314, DUF1461, Protein of unknown function (DUF1461). This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long. These are possibly integral membrane proteins.	7.33133e-34
CP023434.1\|AXY25262.1\|846513_847536_+\|iron-ABC-transporter-permease	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.5832e-78
CP023434.1\|AXY25250.1\|821540_822128_+\|transcriptional-regulator	gnl\|CDD\|368821	pfam06265, DUF1027, Protein of unknown function (DUF1027). This family consists of several hypothetical bacterial proteins of unknown function.	1.1628e-41
CP023434.1\|AXY25261.1\|845602_846511_+\|iron-ABC-transporter-permease	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	2.24569e-97
CP023434.1\|AXY25251.1\|822130_822907_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	9.95231e-99
CP023434.1\|AXY25257.1\|826535_826946_+\|general-stress-protein	gnl\|CDD\|181215	PRK08059, PRK08059, general stress protein 13; Validated.	4.71502e-42
CP023434.1\|AXY25265.1\|848946_849720_-\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.96506e-40
CP023434.1\|AXY25259.1\|836212_836749_+\|arginine--tRNA-ligase	gnl\|CDD\|183534	PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed.	3.1669e-65
CP023434.1\|AXY25266.1\|849808_850492_-\|hypothetical-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	5.71473e-13
CP023434.1\|AXY25253.1\|823597_824170_-\|phosphatidylglycerophosphatase-A	gnl\|CDD\|224186	COG1267, PgpA, Phosphatidylglycerophosphatase A and related proteins [Lipid metabolism].	8.57842e-46
CP023434.1\|AXY25258.1\|826960_828304_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0

>CP023434.1|AXY25258.1|826960_828304_+|glucose-6-phosphate-isomerase
MDHIRYDYAPASPYFAEHELDYLAPYIQLAHEQLHEGTGAGSDFTDWVDWPETYDKEEFDRIKQAAEKIKSDSDVLVVIGIGGSYLGARAAIDFLQDSFYNVKAGTKGMPQVVFAGNSISSTYLHDLVDLIGERDFSINMISKSGTTTEPAIAFRVLKEKLIEKYGEAEAVKRIYATTDKARGALKSEADEMGYETFVIPDGIGGRFTVLTAVGLLPIAVAGGDIDALMEGAREGQQRYASANLKENEAYQYAAVRNILHRKGKDIEILVNYEPGMTYFSEWWKQLYGESEGKDQKGIYPASANFSTDLHSIGQTIQDGQRNIFETVLKVEEPRHDIEIPAYEEDLDGLKYLEGKGIDYVNTKAFQGTLLAHTDGNVPNTIVYIPAMDEHSLGQLIYFFEKAVAVSGYLNGVNPFDQPGVEAYKQNMFALLGKPGFEELAEELNNRL
>CP023434.1|AXY25257.1|826535_826946_+|general-stress-protein
MTEFAIGDIIEGKVTGLQPYGVFVQLNEREQGLVHISECKHGFVTDLNEFIAIGQKVKVIIIDIDEFTHKISLSMRALQPLNIPNYPARIKKKPRRRLPNIGFKTLAKKMPEWIKEGEEIIAKDEFNLYNENKLKK
>CP023434.1|AXY25256.1|825931_826519_+|peptidylprolyl-isomerase
MTTYPQLDLANQKADLTIHTNKGDIDIVLFDEETPLTAKNFRDLAAQGYYNDVIFHRIIEDFMIQGGDPTGTGMGGESVYGGSFQDEFTPTLFNLRGALSMANAGPNTNGSQFFIVTARQVPAQMLGQMKGAAFPEEIIETYAEQGGTPWLDQRHTVFGHVISGMDVVDAIESVETDAQDKPKEPITIESITSHT
>CP023434.1|AXY25255.1|825192_825708_-|hypothetical-protein
MNIPLITSLLAIVLTQAAKLPIAWLFNRKSAKVSIVTSTGGMPSSHSAAVSSLVTALTLEYGFASPFVAITTVFGVIVMFDSMGVRRQSGDQGVILDLLARYHMQELKEMDHNYDEDDSTDNPVSLNLSLSTYDRAIIKKYMGHKPSEVFVGVLSGVLIAFLVRFVYVRFL
>CP023434.1|AXY25254.1|824181_825180_-|ferredoxin--NADP(+)-reductase
MKETIYDITIIGAGPVGLFTAFYASLRQAKVKVIESLAQPGGQPAYLYPEKLIYDIPAYPSISGEALRDQLLKQLDRFEPSLVFNEEVLALKEQTDSDGKAYFEIMTNQAIHASRTVIIAAGNGAFSPRKLSLDNADDFEGGNLHYYINNIEQFTDRVVAVCGGGDSAVDWALTLEPLAKKVYIIHRRQKFRALESSIAQLEASSVEIMTPYVPTHIEGNNGVIDALVINKARTDHFQTLEVDDIIVNYGFTSSIGEIRHWDLALERNKLVVDQHMQTSRPGIYAVGDIATYPGKVDIIASGFGEAPQAVNNALVYMDPEHIQPHMHSTSLF
>CP023434.1|AXY25253.1|823597_824170_-|phosphatidylglycerophosphatase-A
MAPKENLLKKSVLKDQAYRLLEERGVTIEDIADIVYELQKNYVDNLTIEECIENVHAVLKKREVQNAVITGIEIDIVAENGHFSDVLSDLLMRDEGLYGIDEVLVLSIVNVYGSIGLTNFGYVDKVKPGIIGELNDSKDEHCNTFIDDIVGALAAAAASRLAHSQPAKDDVHAHPSPEVSYERSKHSFLN
>CP023434.1|AXY25252.1|822903_823527_+|TIGR01906-family-membrane-protein
MKSPWQRILAISSFVMVSLALAIASTMLISPFVYRLSINGFHLQDISGIASEALMENYLVVLKFLFNPWVSSLKMPYFTSSPGGQQHFLEVKLLIYGIFLIGIFAGIYVIWTLYHCRNKRGNKAMQPHFMVAILLPLFILFMIFIAFDQVFYLFHEVFFRNDLWLFDPLTDPVITVLPQGFFMILFVIAILFYEGYILLFRRLMKVA
>CP023434.1|AXY25251.1|822130_822907_+|TIGR01457-family-HAD-type-hydrolase
MKQYSGYLIDLDGTTYYGKRRIPTAELFIQELLARDIPFKFLTNNATRQIHQIQQMLEQDYDLPVKDSHIYTSIIAMVNYLQHHHPDAELFVIGEEPLKTELRQAGFTISQDRSADVVVQALNRQTNYEELAMATQAILNGATFLVTNTDQLIPTADGLYPSSGATTAFLKHATSIEPIVMGKPHAPIIEGALEQLGLPKDEVLMIGDNYQTDIQVGIQNGVDTLLVLTGVTQKEEVPHLPVAPTYVVDNLSQWMDKI
>CP023434.1|AXY25250.1|821540_822128_+|transcriptional-regulator
MSEKESLTNQLESILTYYAKGEAETYLFARIDDAHIQIEDETYTLVADYREGFDLERFKDRYDEYFAKYDYIVGDWAADQLRLRGFYQLNRQKVPRNRTIDFLDDYLKEYCNFGCAYFVLAKQDVAATYPEELVTYYQRHQQQLERNEQKLGQVDKPRQKANIQTRSKQKSQSKQAVRTKRKHKGSFIIRKKEEA
>CP023434.1|AXY25249.1|819948_821529_+|multifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase
MQPNKRKNQSKGWFFFVCVKFRIIKEGAFEREATGIHALLREENMNAANYLCGKGGCQRYLEDREELMKLHLLHTNDLHGHLEHWDVIRTFLIDRQDTYRNLNEPVLTFDIGDAMDAVHPMVEATQGKVMVDIFNEARYDKVTLGNNEGLNFTKETLAALYQAADFDVIIGNLRDGRTQEPLPWAKPYDFIEVDGLQVLVIGLTAPYQTYPLNGYLIQMPDYALGEIFKQTHKEQSADLTILLSHLGIRTDRKLAQQFPELDVILGAHTHHVLVDGEEVNGVMLGAAGRYGEFVGEMTLTYDAPKHNWSIEAKAHSIEQLAERYKLPVQNDRYRAKGEAYLAEKIISTQSPGLYVQELSGQHSFIHFALEAIMQETNLDLAVLNSGLFLSDLPEGHVTAKQIHEALPHPMHLAVIEMQGWQLLELLEEMDSQAEDLLYQMINGLGFRGKIFGELVWSGISYHDVSQNWSVHSRPIETDAIYRFATVDHLWFLPFFPSIDRYGQPELRFPKFLRHVVQEHLNTLYTD
>CP023434.1|AXY25259.1|836212_836749_+|arginine--tRNA-ligase
MDAAHDIALEQIELKNPDLENKDEVAEQVGVGAVIFHDLKNDRTNSFDFNLEEVVQFEGETKLYVQYTNARIQTILERYGKEVDSSKVESLTDDLAWQLVKQLNNYPGAIRLAGEKYEPSILARNVLRLAQIFNKYYANIRILEDDDLLESRIALIQAVVIVIEDALSLLGIAAPKKM
>CP023434.1|AXY25260.1|844562_845525_+|iron-ABC-transporter-substrate-binding-protein
MKKIFRFFIMLLVFFLPFASANAQDTITITDIHGEVEVPKNPERVVSLDNRTFETLDQWGVKLLAAPKGLIPQEISYATDDAIEDIGNHREPNLEVIAAVEPDLVIVGQRFAKYYDDIKALVPDAAVIDLNIDLETPVDGNYGQTLVDGLKTPVQQLGEIFDKKAEADALVSDFEASVQAATDAYNGEDTVMGVIVSGGDVGYSAPITGRVWGPLFDLFAWKPALEVEGATSDHQGDDISVEAIAESNPAWLMVLDRDAAANEGEEAITAVEVIESSQALNTTDAVQKGQIVYAPLDTYTNESIQTFTELFQSIADAMKD
>CP023434.1|AXY25261.1|845602_846511_+|iron-ABC-transporter-permease
MLLALFSLFTGEYQLTGHDEGWRMLWITRWPRTASLILSGIAMAMSGLVMQLMSQNRFVDASTSGTLEWSSLGILLAYVLFKNPTIFERMTLSIVMAFVGTLIFYKLLQNIRLEGPLMVPIVGMMIGAVISALVTFMSMAMGLDQVVQTWFVASFSSIEMGRYEYLWLILGLVLLLYLFADRLTLASLGEETATSLGLSYQSTVLVGVCLVAFAVGLTSAVIGQLPFVGLIVPNLVSLYRGDHLRSNLPWVCLCGAGIMLVSDILSRILIRPFEVPVSILLSIFGAIVFTVLLFRKYLTKGG
>CP023434.1|AXY25262.1|846513_847536_+|iron-ABC-transporter-permease
MSQKTLAFQKAISQKRYRVLLGTLLFLAVGLSLLYLIINIPVAPTSASFWPIVKRRIVSLLAMLAVSIGQSAATVTFQSFTQNRLITPSLLGFDALYALINTMIIFFLGTRSFLEANNFAGVILSILIMIGVSLFLYGGLLLQEFADVQFVLLIGAVIGIGLRALTNFMQSLLSPSQFDMLKAKLLGSVNNANATVLPLALLVLVSGLILLMRRTQTLNTLSLGRDISINLGLHYKKELLYFLTLVTLFMAVSTALVGSMNFYGFLVAMLTYECVPTYDHRYLLPVACLLGFVMLLAAYLVMNHLFQAQGVVSVVIELVGGFAFLSVLLRRGRSHAFNKG
>CP023434.1|AXY25263.1|847516_848266_+|siderophore-ABC-transporter-ATP-binding-protein
MRLTKVEKRFNTNRIIGPISLDFPKGELTSIIGPNGAGKTTSLLMMGRLLAMDSGHITVSGLDIDNTPSEELAKVLAILRQENHFATRLTVRQLVSFGRYPYSKGRLTAEDEAIITKYIHYLGLAPLENLYLHELSGGQRQRTYVAMVLAQETDYILLDEPLNNLDIAASVQMMNYLREMTTQLSRTIIVVIHDLNMAAKYSDNLCLMKDGQVTHFGKVEEIMQSALLSDLYNVSIQVIDGPDGPIAIY
>CP023434.1|AXY25264.1|848351_848837_+|hypothetical-protein
MTDTWENIKGQKDEIVGKVKEVYGKASDNAELQAEGVQQQVEGEIRQAAAKGRQDEASLKADAEASAAEAQESVKRQSQQTLENVQQKADDNLKDAIQEGKELKEEAARKAEELRQQAIQENKENLQEARDKSAEAHRTAESFDDAARATVEDSLSEEEAE
>CP023434.1|AXY25265.1|848946_849720_-|hypothetical-protein
MRVSRSPCYKWLKREPSPSQLRLEWLREQIQEVYDNYNETYGYRRITIYLNYYKDAKVNHKCVYRLMKLMGLQAVIRRKGYQYKPSKPQHVADNVLDRQFDKDYEPRQVLLTDITEFKYGENCKAYLSAILDYGDNKIIAHKLSKRNNNQLVEDTVVQIEDEIISGETLFHSDRGFQYTSYFFKKFVDEHGLIQSMLSVGKCIDNGPMENFWGIIKVEMYLLNTYDSFEALEADIARYIDFYNNERVTLAMGLKIPA
>CP023434.1|AXY25266.1|849808_850492_-|hypothetical-protein
MRSSRKHSDSELEKYIRLYLEDGISYRTLREEYGLLLSKQTFSNYVTKYRSHGYSGIQTKSSNNHYSHDFKLAVVEEYLDHQEPIRQLALKYNIPSHSTVKNWIIKYTKGEEIKDVVPKPEVYTMKGQKKTQEEKIEIVKDYLETGMSYRETAEKFAVSYNNVYSWVQKYQKHGPDGLIDGRGRRKPESIQTEEEKLRTEMAALKVRNEYLETENAALKKCKKWKES
>CP023434.1|AXY25267.1|850821_852372_-|hypothetical-protein
MKKSMKRILISASVMASMSLVLGHSQVALESVLANSPEAQVEAANQRGRYSNHPVVKAEQEKALNTSINRWEERKPDAIKSEISRQDEAGSIAYVVQWGDTLANIAEAAGQTVENLRAINGMDENTQVVPGDVLAGILNDDQQIAGAYEDFDDDYDDDYDDYDDYDDYDDYDDFDDYDDDYDDDFDDYDDDYDDDDNSDDDNSDDDSDWDDDYYDDVDDNDWDDDDDDNTTDAMPAEQAPTEQSPADTFGDQNNSDWLESFYQDPNNIPGHTPKTTGELPTTEANAEISTITPEVPAESTAAEATPAEQAASESTNAESAPTESTIADSSQANPASVDETQPAEQAAEQAPTEATNGQVADTAPAELAPVDANASNSGTVDMNAVTEHFHALVNQERAAHGGTQLAYGNHLQTAAQNRTQEITNQFSHTRPDGSSFYTAPGFEQGGSVVGENLQQAYFSQDATAQEIAQRLFDNWKQSPGHYQNMMDGSYTTHALQVDSYQSGNGLVVYSTQVFSN
>CP023434.1|AXY25268.1|853054_853693_+|RNA-polymerase-subunit-sigma
MGGIHIDQDINQLIEEHYGFIIQVVSETTNRYVNVKSDDTFSIALLAFEEAVEKYEEDKGAFLAFVRLVIRSRVIDYLRKEQRNQHQSLESMSEDGVQFEDSRQKSDTNLKFEIEDWKQDIASFNISLEQLVDESPKHQDSRERAIRISERSSKHPPITKPLFEKKRLPIKLTATYNNVTEKVIKGNKIFIISVIVIFKKGYSSLVDWIKGG

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Crispr_ID: CP023434_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023434_2

917699-918336

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GTCTTTCCCGCATACGCGGGGGTGATCC	PILER-CR
GTCTTTCCCGCATACGCGGGGGTGATCC	CRISPRCasFinder
GTCTTTCCCGCATACGCGGGGGTGATCC	CRT

10 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP023434_2

>merge|CP023434|2|917699-918336|PILER-CR,CRISPRCasFinder,CRT
GTCTTTCCCGCATACGCGGGGGTGATCCTGACTGGGTTTTTCAGCAATCCCTGAACACTGTGTCTTTCCCGCATACGCGGGGGTGATCCCGATATTTAGAACAGTAAATACATCTTTGCCCCGTCTTTCCCGCATACGCGGGGGTGATCCTCAAAGCGGTTCATCGAATCACTACCAAGGAATGTCTTTCCCGCATACGCGGGGGTGATCCCAAACAACATTGAACGAACTTACACCTATGCTCGTCTTTCCCGCATACGCGGGGGTGATCCCTATATTATATCTTAAAAAGGAAGATGACCATGGTCTTTCCCGCATACGCGGGGGTGATCCCACCACTCCTTTCTATAAAATCCTAAAGTGATTGTCTTTCCCGCATACGCGGGGGTGATCCCAAACAACATTGAACGAACTTACACCTATGCTCGTCTTTCCCGCATACGCGGGGGTGATCCCAAAAAACCATCCTGTAACGCATAACGATTTTCGTCTTTCCCGCATACGCGGGGGTGATCCCACGTTCGCCGGTCCAGTCATCGCTTGCTTTAAGTCTTTCCCGCATACGCGGGGGTGATCCTGAAAACGACTCTACTAATTTAATAGCTGTACAGTCTTTCCCGCATACGCGGGGGTGATCC

>CP023434|2|1|917699-918336|PILER-CR
GTCTTTCCCGCATACGCGGGGGTGATCC	TGACTGGGTTTTTCAGCAATCCCTGAACACTGT
GTCTTTCCCGCATACGCGGGGGTGATCC	CGATATTTAGAACAGTAAATACATCTTTGCCCC
GTCTTTCCCGCATACGCGGGGGTGATCC	TCAAAGCGGTTCATCGAATCACTACCAAGGAAT
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAACAACATTGAACGAACTTACACCTATGCTC
GTCTTTCCCGCATACGCGGGGGTGATCC	CTATATTATATCTTAAAAAGGAAGATGACCATG
GTCTTTCCCGCATACGCGGGGGTGATCC	CACCACTCCTTTCTATAAAATCCTAAAGTGATT
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAACAACATTGAACGAACTTACACCTATGCTC
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAAAAACCATCCTGTAACGCATAACGATTTTC
GTCTTTCCCGCATACGCGGGGGTGATCC	CACGTTCGCCGGTCCAGTCATCGCTTGCTTTAA
GTCTTTCCCGCATACGCGGGGGTGATCC	TGAAAACGACTCTACTAATTTAATAGCTGTACA
GTCTTTCCCGCATACGCGGGGGTGATCC

>CP023434|2|2|917699-918336|CRISPRCasFinder
GTCTTTCCCGCATACGCGGGGGTGATCC	TGACTGGGTTTTTCAGCAATCCCTGAACACTGT
GTCTTTCCCGCATACGCGGGGGTGATCC	CGATATTTAGAACAGTAAATACATCTTTGCCCC
GTCTTTCCCGCATACGCGGGGGTGATCC	TCAAAGCGGTTCATCGAATCACTACCAAGGAAT
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAACAACATTGAACGAACTTACACCTATGCTC
GTCTTTCCCGCATACGCGGGGGTGATCC	CTATATTATATCTTAAAAAGGAAGATGACCATG
GTCTTTCCCGCATACGCGGGGGTGATCC	CACCACTCCTTTCTATAAAATCCTAAAGTGATT
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAACAACATTGAACGAACTTACACCTATGCTC
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAAAAACCATCCTGTAACGCATAACGATTTTC
GTCTTTCCCGCATACGCGGGGGTGATCC	CACGTTCGCCGGTCCAGTCATCGCTTGCTTTAA
GTCTTTCCCGCATACGCGGGGGTGATCC	TGAAAACGACTCTACTAATTTAATAGCTGTACA
GTCTTTCCCGCATACGCGGGGGTGATCC

>CP023434|2|1|917699-918336|CRT
GTCTTTCCCGCATACGCGGGGGTGATCC	TGACTGGGTTTTTCAGCAATCCCTGAACACTGT
GTCTTTCCCGCATACGCGGGGGTGATCC	CGATATTTAGAACAGTAAATACATCTTTGCCCC
GTCTTTCCCGCATACGCGGGGGTGATCC	TCAAAGCGGTTCATCGAATCACTACCAAGGAAT
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAACAACATTGAACGAACTTACACCTATGCTC
GTCTTTCCCGCATACGCGGGGGTGATCC	CTATATTATATCTTAAAAAGGAAGATGACCATG
GTCTTTCCCGCATACGCGGGGGTGATCC	CACCACTCCTTTCTATAAAATCCTAAAGTGATT
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAACAACATTGAACGAACTTACACCTATGCTC
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAAAAACCATCCTGTAACGCATAACGATTTTC
GTCTTTCCCGCATACGCGGGGGTGATCC	CACGTTCGCCGGTCCAGTCATCGCTTGCTTTAA
GTCTTTCCCGCATACGCGGGGGTGATCC	TGAAAACGACTCTACTAATTTAATAGCTGTACA
GTCTTTCCCGCATACGCGGGGGTGATCC

Protein	Signature genes	Signature genes Name	Protein_function
CP023434.1\|AXY25314.1\|918966_919149_+\|hypothetical-protein	unknown	unknown	unknown
CP023434.1\|AXY25316.1\|919965_920721_+\|transposase	unknown	unknown	gnl\|CDD\|379233
CP023434.1\|AXY25312.1\|915837_916782_+\|subtype-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP023434.1\|AXY25311.1\|915200_915845_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
CP023434.1\|AXY25313.1\|916781_917684_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
CP023434.1\|AXY25309.1\|913402_914476_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP023434.1\|AXY25319.1\|923622_925218_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173869
CP023434.1\|AXY25320.1\|925365_927159_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
CP023434.1\|AXY25306.1\|908362_911122_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP023434.1\|AXY25317.1\|920816_921512_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
CP023434.1\|AXY25305.1\|904690_906106_+\|flippase	unknown	unknown	gnl\|CDD\|240532
CP023434.1\|AXY26710.1\|918471_918714_+\|hypothetical-protein	unknown	unknown	unknown
CP023434.1\|AXY25304.1\|903690_904668_+\|glycosyl-transferase-family-A	unknown	unknown	gnl\|CDD\|182223
CP023434.1\|AXY25308.1\|912816_913401_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
CP023434.1\|AXY25307.1\|911108_912824_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
CP023434.1\|AXY25318.1\|922340_923504_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
CP023434.1\|AXY25315.1\|919474_919909_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
CP023434.1\|AXY25322.1\|928916_929111_-\|hypothetical-protein	unknown	unknown	unknown
CP023434.1\|AXY25310.1\|914477_915188_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
CP023434.1\|AXY25321.1\|927520_928060_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|376292

Protein	Function_ID	Function_description	E-value
CP023434.1\|AXY25316.1\|919965_920721_+\|transposase	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	3.04527e-12
CP023434.1\|AXY25312.1\|915837_916782_+\|subtype-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.52238e-127
CP023434.1\|AXY25311.1\|915200_915845_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.42955e-59
CP023434.1\|AXY25313.1\|916781_917684_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	7.44893e-44
CP023434.1\|AXY25309.1\|913402_914476_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	8.21209e-146
CP023434.1\|AXY25319.1\|923622_925218_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
CP023434.1\|AXY25306.1\|908362_911122_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.1056e-84
CP023434.1\|AXY25317.1\|920816_921512_+\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.23041e-38
CP023434.1\|AXY25305.1\|904690_906106_+\|flippase	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	3.85216e-112
CP023434.1\|AXY25315.1\|919474_919909_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	2.62169e-09
CP023434.1\|AXY25304.1\|903690_904668_+\|glycosyl-transferase-family-A	gnl\|CDD\|182223	PRK10073, PRK10073, putative glycosyl transferase; Provisional.	3.86211e-44
CP023434.1\|AXY25308.1\|912816_913401_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	5.53967e-36
CP023434.1\|AXY25307.1\|911108_912824_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	3.03753e-88
CP023434.1\|AXY25318.1\|922340_923504_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	6.65534e-51
CP023434.1\|AXY25320.1\|925365_927159_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP023434.1\|AXY25310.1\|914477_915188_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	9.53523e-45
CP023434.1\|AXY25321.1\|927520_928060_-\|superoxide-dismutase	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	4.00432e-37

>CP023434.1|AXY25313.1|916781_917684_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPLTVITLKNVPPSLKGDLTKWMQEISTGVYVGNFNTKVREQLWQRVRESAGVGEATMSYATRNEIGYQFETHNSTRIPIDYDGIPLIMIPKEYKVEESKLNSGFSDAAKFRKAKKHTNKVERSESMSYVVLDIETDGLNPKEHSIIEIAAVKVQGANHAEFHSFVAYDKKLPPEITRLTGITESVLEQGERIDVAIESLLAFLGDFAIIGYNIAFDISFINEVLKRLSYKPLTNSIYDMQKYVKREQPFLSNYKLETVLEAYGIDKHVPHRALEDARLIYELSTKVNEFHKKFKLYSLS
>CP023434.1|AXY25312.1|915837_916782_+|subtype-I-E-CRISPR-associated-endonuclease-Cas1
MSDFKGARKTNIPELPRIGDRVSFIYIEHAKINRQDSAITFADSKGIVRFPAAMIGVLLLGPGTDITHRAIELIGDTGTSIVWVGERGVRHYAHGRSLARSTRFLERQAKLVSNTRTRLEVARLMYQMRFPKENVSKLTMQQLRGREGARIRKVYRHYSKLYDVPWSGREYNPDDFEASDPINQALSASNVALYGVVHSIVVALGMSPGLGFVHTGHDLSFVYDVADLYKAELTIPISFEITSTIDDGDDISRFARLKVRDAMVDGKMMKRIVKDLQALLDIPDDERLYIDTINLWDDKDHLVDYGVNYSIGEL
>CP023434.1|AXY25311.1|915200_915845_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYISRVVIDYENRRKTRDLMHLGAYHNWVEHSFSEEISQGVRSRKLWRIDRLDGEFVLLIISEVKPDISKLERYGVPGTGMTKDYTMFLNSIEQGMKARFKITLNPVVSMPTEGARRGRVVPLVNIEDQMKFLKDRSVKHGFYVDDNDFQITERSFEPLKKNNGRDLRISRVTYEGNLIVQDIDKFRDLLINGMGQKKAYGFGLMTIIPVKEDV
>CP023434.1|AXY25310.1|914477_915188_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRLMKTILLKFAGPMQAWGSSSSFETRDTDTHPTKSAIIGLIGASLGYRRDDELIHKLNELKIAVRVDQPGRRLHDYHTAAKTKANGSFERTYVTNRYYLEDAVFIVAINHPTDAWITEIAEALKHPYFQGYLGRRSLPLTYDYFLGVIDKDIIQAIEEIPWQAHKSYQKKHSNKVTVFMDAELSNEGPVTMRKDRVKSFSQKNRMFDYRGEVRRSVFAPIKTQLSSTEHDAFDAI
>CP023434.1|AXY25309.1|913402_914476_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MQSRLFMDVHVIQTLPPSNINRDDTGSPKTAQYGGVRRARVSSQSWKKAIRDYFNTNGDAQNVGVRTLEIVRYVADKIQSIDPSISEEAAMKLADQTFKTAKVSTKDQRAKALFFLGDTQADQLAEAAINGVADKKTLQEILRNNPAVDIALFGRMVADDPSLNEDASSQIAHAISTHAVQTEFDFYTAVDDLAPEDNAGAGMLGTLEFNSSTLYRYGNVAVHELMQQLESKESVINALKLFVEAFSNSMPTGKVNSYANQTIPDLILVTLRDDRPVNLVTAFETPVKSNHGNVVESVMKLFEEADKAHKFVKEPLTANYVSMVDLEANKISASELASLSTLTEQLGNDLTQLIIED
>CP023434.1|AXY25308.1|912816_913401_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSENLDIYLIVSRILRRIESNLETSSGKAILANLRHSVGRPISESVEIWPLVFEEIPEHYLSNRGELTKEERAIISTLQLYAIHQQSKPLSVNSYDKSDSVGKALKALRQEDNQVAIDRRFNTMITASTYEELIHHLRQLIRLLRNKAPQQRLNYASLANDLYWFQRGYEESIRLRWGKAYYRGQQVKEDKGED
>CP023434.1|AXY25307.1|911108_912824_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSRFNLIDEPWISVMVNLSGETKEVSLKELFTNAHQYVQLAGDTKTQDFAVFRVLLAILHTVFSRVDADGEAYEYVTLDDNFRVVDIEENPRVKLMYEKELMDTWQELWNSGRFPEIINLYLQQWHERFYLFDEMYPFYQVTEQVVSADNINKARPSVISGKNINRQISESGNKTALFSPKYSAKNNKEKLTEAEIARWLITFQGYTGLSDKVIFGKEKYDVSNSKGWLFDLGGIYLEGDNLFETLLLNLVLNHPVDEYKSLQQKPAWEFSGEEVVNRLLKQEPVRNLAELYTNWSRAIYIDPSTDIADAFQLSIVKLPEIKHQNQFLEPMTLWRFNRTGTNKETFTPRKHTFQQAMWRSFGLISLPDDDSENQRRPKIMDWYRTVKPFIGDRRVVINTVSMQDDGNATSWVPTNEIIDRMNVEDFIIDDDKPEGWLYRVDSIVSETQQMINIHYRNFLRDIVQIRGLDGKNDYIPQSIAKIYEAVDRPFREWLEGIGTGDSMDEKTFEWRETLFTILTNETNRIIDNATYRDYRGVTIKDGTRILNIVTAHNRLIYHLRKGLKMKEADYE
>CP023434.1|AXY25306.1|908362_911122_+|CRISPR-associated-helicase/endonuclease-Cas3
MEKIISKLWAKKKEENGQFKWLSLTQHLWDTQNIIVYLWDHWLSEAQRQIVIQSLAVPAPEIARNLARFLGAIHDNGKATPVFQVKKGYNHSPDLDAALIEKLELAGFTGISTLQLASPNESHHALAGERIIRQLGVKEDIASIIGAHHGKPVEHEERIAREVAFPRNYFQADSVDHPTAQKWLKAQEVILEWALNISDFKDVSALPEVSQAGQVILTGLLITADWIASNEQYFPLKSLTDEDIDWSNHRSQTAWKKWFKTYPIDLSNKTKDIYQSFENRFEFSPRNVQTEVLEIVDSVDEPGLFILEAPMGLGKTETALMGAEVLMDKTQRSGIFFGLPTQATSNGIFPRIEKWLTRLSEENKESVQIRLSHGKASLNESFAGLARNIDDDGEGQVFVNEWFAGRKTAALDDFVVGTVDQCLMLALKQKHLMLRHLGFSKKVVILDEVHAYDAYTNQYLSQALKWLAYYDVPVIVLSATLPAQTRVQLVDAYLWGKGSYLSKASKKQIQGDSYPLLTYIDGVKVEQFEAFEEIEDKRVQVKSLSDDQLDATLQSLLHLGAVVGVVVNTVKKAQELAADCVRQFGQDKVCLLHSSFIATDRAKLEADLIEMIGKDGQRPKGQIIIGTQVLEQSLDIDFDVLITDLAPMDLLIQRIGRLHRHLIPRPNGLEKPVTYVLGMGDSFDFDKGSSAVYGEYLLMRTQCLLPESINIPSDISPLVQQVYSDNDEITLDKDLEEKYLQAKQCFETELKIKKSKANTYLLSDPQFEDLHVGQQSLIGWLKGPSQDVSDEKSYAQVRDIQESIEIIAVRKLFEGYTFFGEDIDISHQIEEFTVGKRLANETIKLPMALTQRWNIDTTIEELEIYNKKYLANWQDQAWLRGKLGLIFDEEGECTLNGYRLKYDAFYGLMYEREEQSESI
>CP023434.1|AXY25305.1|904690_906106_+|flippase
MKNLKEGIIYNAIGKYSNVIITFLVQVILSRLLAPDEFGIIAVVNVFLVFFQLLSDFGIGPAIIQRKDIDDNEVNQIFSFSVYFSLFLTLVFTLLAYPISRFYRNPELVSVVPVMSLALLFNSLCMVPQNLLLKEKHFKLVNMVQIIGSATNGLVSVLLAFRGFSYYSIILGNISRAFFQWFFYMYHTRLKFYFRFSVAPLKKIYKFARNQFGFNVINYFSRNLDSILIGRYMSAGQLGYYDKAYQLSLYPNTIFTSVITSAIQPIFSEFQDNLKAIKDGYLNIAKALANFGVPLTVFLWFTSEDIILFLYGDQWQPSVLAFKILSLSVWIQMLQSSTGAFFQSANRTDLLLTSGILSTLLNIIAIVIGISRGSIYWVAIMIVISFSMNFLQTNYLLLNKTFGGSLLEAFKVLVKPTIMGIVTLFFLILLPINNYSPFINLIFKGIAFLLSLILGLLITNQMKELLILLKR
>CP023434.1|AXY25304.1|903690_904668_+|glycosyl-transferase-family-A
MSNELLLSIIVPIFNTEHYLAECLDSLLSQGITDYEIICINDGSTDNSLEILEKYSECYPFIRVFNQCNKGLSVTRNRGINLAKGKYIYFMDSDDVLEENSLIYIIDQMEQKNLDLYVFDAESFLDDSVKEDLEIIRYDKSQSYGIYETGVCLFEELVKDRVFSPSACLYIIRRGVLINTKLHFIEDILHEDEAFTVEAFLFSARSMHENKFFFKRRIRSDSIMTRKRTVKNFEGYYAVFKRLNQYKSYSIGVRKRIAIIYNSMVDIYLELNNFEQNNVYLQYVDAVNQAKENRYYTLTTWLKHKNSITRWVYEILIFLKNKLMN
>CP023434.1|AXY26710.1|918471_918714_+|hypothetical-protein
MTVIALVRYVGESFGVDSLTNGKIYSVVGVDGTDMIRVVDDSEEDYLYEIINPAPLDGSSEGGKWEIIKDYTGELSTYLK
>CP023434.1|AXY25314.1|918966_919149_+|hypothetical-protein
MDRRLLDELKKVRKALENIAKALEKANRMDEEFYKKEHGIGLKECTEPEIPDEVLKEYII
>CP023434.1|AXY25315.1|919474_919909_+|VanZ-family-protein
MPYEDQTLIPILQRLLPNQPLSGFFNRIQFSYGNEVISMESMGYYSLLEFFIRKGAHFINFGFLGLMIYFFLRPYINHAIILYGVAITLTFGLASFDELHQVSTLNRSGCIEDVLLDTLGAIVFVSLAHFFISLFRQNKQTDSD
>CP023434.1|AXY25316.1|919965_920721_+|transposase
MRSNRKYSDSELEKYIRLYLEDGISYRTLREEYGLLLSKQTFSNYVTKYRSHGYSGIQTKTSNNHYSHDFKLAVVEEYLDHQEPIRQLALKYNIPSHSTVKNWIIKYTKGEENKDVVPKPEVYTMKSQKKTQEEKIEIVKDYLETGMSYRETAEKYDVSYNNVYSWVQKYQKHGPDGLIDGRGRRKPESIQTEEEKLKTENAALKARNEYLETENAVLKKLQEVERELMLQEQNTKRNSRRLRNLSKKDIK
>CP023434.1|AXY25317.1|920816_921512_+|hypothetical-protein
MEQIQEVYDNYNGIYGYRRITIYLNYYKDAKVNHKCVYRLMKLMGLQAVIRRKRYQYKPSKPQHVADNVLDRQFDKDYEPRQVLLTDITEFKYGENCKAYLSAILDYGDNKIIAHKLSKRNNNQLVEDTVVQIEDEIISGETLFHSDRGFQYTSYFFKKFVDEHGLIQSMSRVGKCIDNGPMENFWGIIKAEMYRLNTYDSFEALEADIARYIDFYNNERVTLAMGLKIPV
>CP023434.1|AXY25318.1|922340_923504_+|MFS-transporter
MEHSKEELPMVLLLLMACMTFMAIVSEMTISGIIPNLVSDLGISELQAGNLVGYYSVAAALVTIPVSMWTVSWNRKRLLLGIIAFYFLGNVLIAFSASYPTLIMGRLIGGTAAGALWPMISAFVMKLVHAEHHGRAVVIALSGATLGISVGLPLMTSIAQFAIWRVEMAFVALLFLVLSLGVYFWMPNTPGDERTAENSLSTVLGHGSVWLVMMLVALVVYANYSVYTYQANMLETFAYSGGITLAQSLFGFGSLLAVFITAKYIDSHLQWVTLGVITASIIAFLVFFFVEGASSLWHGAFILWGMGFGPLTTLFQTLASRQVPASATAIVNAIQAAVYDVSIMLGSSLGGVLLVNSGIGLVLQVAMIGLFVANELVLVSRRIFALR
>CP023434.1|AXY25319.1|923622_925218_-|ABC-transporter-substrate-binding-protein
MKRLFKLLLALLLALNVGVPLASAQAPSDLNLTLSSEPPSLDPGVTNDSTSVAILHNVFEGLTNNVDGEVEPGVAESWEISEDGLVYTFHLRDNVVWSNGDPVTAHDFEYSWKRVLNPDTAAQNSTVLHIIQGAEAYNTGEGTADEVGIKAIDDYTLEVTLEHPAPYFIELPGYYTLLPVHQATVEASDAWATEAGDGYVSNGPYILSEWNHNSDLTLSRNDAYWDNANTTIDSAFIQIIESEATQNAEYQAGNLSYLGAPFGSVSLDSVDLYRANGELQANPYSAIYWYKVNTTDEIMQNANIRKALALAINRQELIDNILKSEQIPAMSLVPPVVKGFEEKHDYFQDADFEQARQYLAQGLEELGMSDPSELTINLSINDSEAHSAVAQFIQAGWTTELGINTNIDSTEWQVYLDKVSNLDYQVARLGWIGAYNDATIFLNQYRAVDTGNNDTGWENPDFTRLMNESDQEQDDAQRIQLMKDAEAVMMEDMPVIPLYFYSNDFVTQAGYENLEPNAFGYIQLKHVTLAD
>CP023434.1|AXY25320.1|925365_927159_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGFVGNGPVQKVLVDGLAKLEYRGYDSAGIYIMDTDGQDALFKTEGRIADLDQLVDYDLPAMMGIGHTRWATHGEKATRNAHPHQSASGRFTLVHNGVIENYEALKAEYLQDYPFQSETDTEVLVALVDFLAKEKGLSGEDAFYQMLALVQGSYAIALVDNHTPDRLYGAKHKSPLLLAIGDGFNGLVSDAMAMIAYTDQYVELQDGEVLILEADQVHITTLDKKPIERAPYTAELDAQDLEKGTYPFYMLKEIDEQPAVLRTLINAYIQDGAYHIDADLLQAIQAADHLYIIACGTSYNAGWIGKKLLENWANIPTDVYLASEFAYDMPLLSARPFFIFLSQSGETADSRQALVEVNCMGAPSLTITNVKGSTLSREASYTLLLHAGPEIAVASTKAYTAQISVMALLAAALGNIPIQEIARDLGIVASTMESILAEKSRIQGWADSNLMETRNAFYIGRTSDYYVSMEAALKLKEISYIQTEAFAAGELKHGTIALIEEGTPVLALITDPVTGSHTRGNLEETKARGAQTMVISMEDTARDGDDFVIQSVRSELRPLVSVVVTQLIAYYTALGRGLDVDKPRNLAKSVTVE
>CP023434.1|AXY25321.1|927520_928060_-|superoxide-dismutase
MVKSASEKVAEEVAFEVVSDVINQDEEVIGTATFQEDADGVVTLHLQVESLPEGEFGTHIHEVGLATPPTFEDAGSHFNPTNVEHGSESESGPHLGDLPNLVVGADGKVDETFEIPGVTLDPDGEHTLNSLDGSSLIIHTEAYDYVSQPTGDAGDRQAAAVIFAPQEGSEHIIRLMMSK
>CP023434.1|AXY25322.1|928916_929111_-|hypothetical-protein
MVEFTTLVKEGQTQVCNTFYALVPTVVRNPVCILDKEATAARGINLYLIRRERLAFADAPDAVV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP023434_2	2.5\|917971\|33\|CP023434\|PILER-CR,CRISPRCasFinder,CRT	917971-918003	33	NZ_CP032531	Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence	89533-89565	7	0.788
CP023434_2	2.9\|918215\|33\|CP023434\|PILER-CR,CRISPRCasFinder,CRT	918215-918247	33	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	875832-875864	7	0.788
CP023434_2	2.9\|918215\|33\|CP023434\|PILER-CR,CRISPRCasFinder,CRT	918215-918247	33	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	880512-880544	7	0.788
CP023434_2	2.2\|917788\|33\|CP023434\|PILER-CR,CRISPRCasFinder,CRT	917788-917820	33	MG065675	UNVERIFIED: Campylobacter phage A118, complete genome	48943-48975	9	0.727
CP023434_2	2.2\|917788\|33\|CP023434\|PILER-CR,CRISPRCasFinder,CRT	917788-917820	33	MG065669	UNVERIFIED: Campylobacter phage A123, complete genome	48927-48959	9	0.727
CP023434_2	2.5\|917971\|33\|CP023434\|PILER-CR,CRISPRCasFinder,CRT	917971-918003	33	NZ_CP036489	Rahnella aquatilis strain MEM40 plasmid pMEM40-2, complete sequence	35809-35841	10	0.697
CP023434_2	2.2\|917788\|33\|CP023434\|PILER-CR,CRISPRCasFinder,CRT	917788-917820	33	KC595511	Bacillus phage Basilisk, complete genome	60433-60465	11	0.667
CP023434_2	2.2\|917788\|33\|CP023434\|PILER-CR,CRISPRCasFinder,CRT	917788-917820	33	MG967618	Bacillus phage v_B-Bak10, complete genome	60663-60695	11	0.667

1. spacer 2.5|917971|33|CP023434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032531 (Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence) position: , mismatch: 7, identity: 0.788

ctatattatatcttaaaaaggaagatgaccatg-	CRISPR spacer
atatattatatcttaaaaagggaggtgg-agtgt	Protospacer
 ********************.**.**.  .**

2. spacer 2.9|918215|33|CP023434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 7, identity: 0.788

cacgttcgccggtccagtcatcgcttgctttaa	CRISPR spacer
cggtctcgccggtccagtcatcgcctgcttcag	Protospacer
*.  .*******************.*****.*.

3. spacer 2.9|918215|33|CP023434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 7, identity: 0.788

cacgttcgccggtccagtcatcgcttgctttaa	CRISPR spacer
cggtctcgccggtccagtcatcgcctgcttcag	Protospacer
*.  .*******************.*****.*.

4. spacer 2.2|917788|33|CP023434|PILER-CR,CRISPRCasFinder,CRT matches to MG065675 (UNVERIFIED: Campylobacter phage A118, complete genome) position: , mismatch: 9, identity: 0.727

cgatatttagaacagtaaatacatctttgcccc	CRISPR spacer
aactatttggaacagtaaagacatcttagacaa	Protospacer
 . *****.********** ******* * *

5. spacer 2.2|917788|33|CP023434|PILER-CR,CRISPRCasFinder,CRT matches to MG065669 (UNVERIFIED: Campylobacter phage A123, complete genome) position: , mismatch: 9, identity: 0.727

cgatatttagaacagtaaatacatctttgcccc	CRISPR spacer
aactatttggaacagtaaagacatcttagacaa	Protospacer
 . *****.********** ******* * *

6. spacer 2.5|917971|33|CP023434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036489 (Rahnella aquatilis strain MEM40 plasmid pMEM40-2, complete sequence) position: , mismatch: 10, identity: 0.697

ctatattatatcttaaaaaggaagatgaccatg	CRISPR spacer
tttagttatatctgaaaaaggaaaatgacagaa	Protospacer
.*  .******** *********.***** . .

7. spacer 2.2|917788|33|CP023434|PILER-CR,CRISPRCasFinder,CRT matches to KC595511 (Bacillus phage Basilisk, complete genome) position: , mismatch: 11, identity: 0.667

cgatatttagaacagtaaatacatctttgcccc	CRISPR spacer
tccaatttagaaaagtaaatatatctttcagta	Protospacer
.   ******** ********.******   .

8. spacer 2.2|917788|33|CP023434|PILER-CR,CRISPRCasFinder,CRT matches to MG967618 (Bacillus phage v_B-Bak10, complete genome) position: , mismatch: 11, identity: 0.667

cgatatttagaacagtaaatacatctttgcccc	CRISPR spacer
tctaatttagaaaagtaaatatatctttctgta	Protospacer
.   ******** ********.****** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

183187 : 247117

Staphylococcus_phage(25.0%)

integrase,transposase

attL 175518:175533|attR 246116:246131

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
175518:175533	attL	NA	NA	NA	NA
AXY24698.1\|183187_184945_-\|transposase	transposase	NA	NA	NA	NA
AXY24699.1\|185431_185878_+	50S ribosomal protein L13	NA	NA	NA	NA
AXY24700.1\|185895_186288_+	30S ribosomal protein S9	NA	NA	NA	NA
AXY24701.1\|186412_187090_-	hypothetical protein	NA	NA	NA	NA
AXY24702.1\|187296_187740_+	hypothetical protein	NA	NA	NA	NA
AXY24703.1\|187749_188784_+	hypothetical protein	NA	NA	NA	NA
AXY24704.1\|188777_189539_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.0e-31	35.8
AXY24705.1\|190058_190550_-	hypothetical protein	NA	NA	NA	NA
AXY24706.1\|190684_191068_-	hypothetical protein	NA	NA	NA	NA
AXY24707.1\|191323_192499_+	carboxylate--amine ligase	NA	NA	NA	NA
AXY24708.1\|192509_193262_+\|transposase	transposase	NA	NA	NA	NA
AXY24709.1\|193699_194482_+	hypothetical protein	NA	NA	NA	NA
AXY24710.1\|194494_195322_+	hypothetical protein	NA	NA	NA	NA
AXY24711.1\|195654_196821_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	3.5e-111	54.2
AXY24712.1\|196854_197433_+	hypothetical protein	NA	NA	NA	NA
AXY24713.1\|197787_198489_-	hypothetical protein	NA	NA	NA	NA
AXY24714.1\|198638_199187_-	isochorismatase	G3MA16	Bacillus_virus	1.1e-30	41.9
AXY24715.1\|199792_200260_+	cupin	NA	NA	NA	NA
AXY24716.1\|200385_201264_-	sugar isomerase	NA	NA	NA	NA
AXY24717.1\|201432_202854_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
AXY24718.1\|202864_203707_+	HAD family hydrolase	NA	NA	NA	NA
AXY24719.1\|204057_205281_+	hypothetical protein	NA	NA	NA	NA
AXY24720.1\|205572_206310_+	multidrug ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-27	30.4
AXY24721.1\|206302_207637_+	hypothetical protein	NA	NA	NA	NA
AXY24722.1\|207708_209520_+	hypothetical protein	NA	NA	NA	NA
AXY26685.1\|210614_211448_+	hypothetical protein	NA	NA	NA	NA
AXY24723.1\|213353_215441_+	hypothetical protein	NA	NA	NA	NA
AXY24724.1\|215678_215969_+	hypothetical protein	NA	NA	NA	NA
AXY24725.1\|215984_216665_+	hypothetical protein	NA	NA	NA	NA
AXY24726.1\|216558_216813_+	hypothetical protein	NA	NA	NA	NA
AXY24727.1\|216836_217025_+	hypothetical protein	NA	NA	NA	NA
AXY24728.1\|217086_217272_+	hypothetical protein	NA	NA	NA	NA
AXY24729.1\|217489_217972_+	hypothetical protein	NA	NA	NA	NA
AXY24730.1\|217968_218397_+	hypothetical protein	NA	NA	NA	NA
AXY24731.1\|218742_219771_+	hypothetical protein	NA	NA	NA	NA
AXY24732.1\|219929_220220_+	hypothetical protein	NA	NA	NA	NA
AXY24733.1\|220378_220609_+	hypothetical protein	NA	NA	NA	NA
AXY24734.1\|220767_220986_+	hypothetical protein	NA	NA	NA	NA
AXY24735.1\|221144_221378_+	hypothetical protein	NA	NA	NA	NA
AXY24736.1\|221490_221676_+	hypothetical protein	NA	NA	NA	NA
AXY24737.1\|221855_222938_+	peptidase M28	NA	NA	NA	NA
AXY24738.1\|222951_223959_+	lipoate--protein ligase	NA	NA	NA	NA
AXY24739.1\|224424_227082_+	hypothetical protein	A0A141HSE6	Bacillus_phage	6.6e-17	35.5
AXY24740.1\|227300_229601_-	bifunctional glutamate--cysteine ligase/glutathione synthetase	NA	NA	NA	NA
AXY24741.1\|236877_238200_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
AXY24742.1\|238349_239483_-\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	5.6e-58	36.2
AXY24743.1\|239536_240469_-	hypothetical protein	NA	NA	NA	NA
AXY24744.1\|240481_241228_-	multidrug transporter	S4SVC5	Staphylococcus_phage	2.6e-35	39.8
AXY24745.1\|241261_242488_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
AXY24746.1\|243042_243336_+	hypothetical protein	NA	NA	NA	NA
AXY24747.1\|243619_244450_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	6.1e-110	70.1
AXY24748.1\|244659_245655_+	hypothetical protein	NA	NA	NA	NA
AXY24749.1\|246184_247117_+\|transposase	IS481 family transposase	NA	NA	NA	NA
246116:246131	attR	NA	NA	NA	NA

DBSCAN-SWA_2

427932 : 468094

Streptococcus_phage(31.43%)

head,capsid,portal,holin,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY24896.1\|427932_429348_-	hypothetical protein	S5M9Y4	Brevibacillus_phage	3.6e-22	42.2
AXY24897.1\|429340_429553_-\|holin	holin	A0A075EHP3	Siphovirus	1.8e-05	42.4
AXY24898.1\|429574_429919_-	hypothetical protein	A0A1P8BKU2	Lactococcus_phage	1.3e-10	36.5
AXY24899.1\|429937_432481_-	hypothetical protein	A0A2P1JTV5	Anoxybacillus_phage	2.8e-12	22.9
AXY24900.1\|432490_433525_-	hypothetical protein	NA	NA	NA	NA
AXY24901.1\|433521_435021_-	hypothetical protein	A0A1S5SA59	Streptococcus_phage	1.7e-94	45.8
AXY24902.1\|435020_435737_-	hypothetical protein	A0A1S5SA63	Streptococcus_phage	1.1e-56	47.5
AXY24903.1\|435733_439222_-	hypothetical protein	A1EAB0	Streptococcus_phage	2.3e-86	71.9
AXY24904.1\|439236_439545_-	hypothetical protein	NA	NA	NA	NA
AXY24905.1\|439595_439970_-	hypothetical protein	A0A2P1JTV4	Anoxybacillus_phage	2.5e-23	51.4
AXY24906.1\|439998_440616_-\|tail	phage major tail protein, TP901-1 family	D7RWD5	Brochothrix_phage	2.1e-22	37.7
AXY24907.1\|440628_441012_-	hypothetical protein	NA	NA	NA	NA
AXY24908.1\|441011_441356_-	hypothetical protein	A0A1L2K255	Streptococcus_phage	1.2e-16	45.4
AXY24909.1\|441356_441650_-	hypothetical protein	NA	NA	NA	NA
AXY24910.1\|441646_441967_-\|head,tail	phage head-tail adapter protein	A0A2H4IYR7	uncultured_Caudovirales_phage	6.7e-17	45.8
AXY24911.1\|441971_442151_-	hypothetical protein	Q4ZC68	Staphylococcus_virus	4.6e-07	53.8
AXY24912.1\|442150_442948_-\|capsid	N4-gp56 family major capsid protein	A0A2H4PQL1	Staphylococcus_phage	2.7e-83	58.5
AXY24913.1\|442949_443537_-	hypothetical protein	C9E2J3	Enterococcus_phage	3.6e-08	32.3
AXY24914.1\|443639_443858_-	hypothetical protein	NA	NA	NA	NA
AXY24915.1\|444106_444337_-	hypothetical protein	NA	NA	NA	NA
AXY26692.1\|444339_446037_-	hypothetical protein	A0A1P8BM47	Lactococcus_phage	1.1e-46	36.6
AXY24916.1\|446020_447385_-\|portal	phage portal protein	Q9AZ65	Lactococcus_phage	7.9e-99	45.0
AXY24917.1\|447384_448647_-\|terminase	PBSX family phage terminase large subunit	B6CXD2	Clostridium_phage	1.3e-95	45.3
AXY24918.1\|448639_449164_-\|terminase	terminase	A0A097BYA2	Enterococcus_phage	7.9e-39	50.0
AXY24919.1\|449465_449885_-	transcriptional regulator	NA	NA	NA	NA
AXY24920.1\|450090_450324_-	hypothetical protein	NA	NA	NA	NA
AXY24921.1\|450327_450558_-	hypothetical protein	NA	NA	NA	NA
AXY24922.1\|450669_451161_-	single-stranded DNA-binding protein	A0A218MNB4	uncultured_virus	5.1e-40	67.5
AXY24923.1\|451157_451616_-	hypothetical protein	Q0R588	Streptococcus_phage	4.3e-09	44.0
AXY24924.1\|451521_452001_-	hypothetical protein	NA	NA	NA	NA
AXY24925.1\|452002_452914_-	DnaD domain protein	A0A0A7S128	Clostridium_phage	1.6e-34	36.4
AXY24926.1\|452996_453305_-	hypothetical protein	D9J0X5	Brochothrix_phage	1.0e-22	53.8
AXY24927.1\|453315_454167_-	recombinase RecT	D2IYT9	Enterococcus_phage	1.4e-80	55.0
AXY24928.1\|454182_454398_-	hypothetical protein	A0A2I6QR20	Streptococcus_phage	3.9e-21	64.8
AXY24929.1\|454400_455360_-	hypothetical protein	D2IYT8	Enterococcus_phage	6.7e-60	42.6
AXY24930.1\|455329_456112_-	hypothetical protein	NA	NA	NA	NA
AXY24931.1\|456083_456278_-	hypothetical protein	NA	NA	NA	NA
AXY24932.1\|456463_456901_-	hypothetical protein	NA	NA	NA	NA
AXY24933.1\|456893_457868_-	hypothetical protein	A0A286QN42	Streptococcus_phage	7.8e-32	43.9
AXY24934.1\|458153_458366_-	hypothetical protein	A0A1X9I6I3	Streptococcus_phage	6.7e-05	39.3
AXY24935.1\|458508_458886_+	hypothetical protein	A0A1S5SCT1	Streptococcus_phage	6.1e-17	43.0
AXY24936.1\|459017_459275_-	hypothetical protein	NA	NA	NA	NA
AXY24937.1\|459349_459517_+	YjzC family protein	A0A0A7RTS6	Clostridium_phage	4.7e-14	70.6
AXY24938.1\|459513_459720_-	hypothetical protein	NA	NA	NA	NA
AXY24939.1\|459701_459899_-	hypothetical protein	NA	NA	NA	NA
AXY24940.1\|460341_460596_-	DUF739 domain-containing protein	C5IUM3	Streptococcus_phage	3.2e-06	37.0
AXY24941.1\|460768_461182_+	hypothetical protein	A0A1S5S8T5	Streptococcus_phage	1.5e-08	34.6
AXY24942.1\|461187_461589_+	hypothetical protein	R9TQI1	Paenibacillus_phage	5.3e-11	36.1
AXY24943.1\|461642_462143_+	hypothetical protein	NA	NA	NA	NA
AXY24944.1\|462257_462677_+	hypothetical protein	NA	NA	NA	NA
AXY24945.1\|462774_463770_+	hypothetical protein	A0A1Q1PVS3	Staphylococcus_phage	1.7e-21	26.5
AXY24946.1\|463895_465323_+	recombinase family protein	D7RWL2	Brochothrix_phage	1.4e-93	43.0
AXY24947.1\|465378_466206_+	ribokinase	NA	NA	NA	NA
AXY24948.1\|466177_466576_+	D-ribose pyranase	NA	NA	NA	NA
AXY24949.1\|466606_468094_+	D-xylose ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.6e-12	26.9

DBSCAN-SWA_3

504393 : 512126

Paenibacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY24985.1\|504393_505137_+	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	3.6e-05	33.3
AXY24986.1\|505263_505524_+	hypothetical protein	NA	NA	NA	NA
AXY24987.1\|505600_506296_-	hypothetical protein	A0A0C5AC89	Paenibacillus_phage	5.9e-50	46.5
AXY24988.1\|506462_507146_-\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	7.6e-18	33.5
AXY24989.1\|507557_509378_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	1.4e-21	27.6
AXY24990.1\|509474_511394_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	6.5e-107	39.3
AXY24991.1\|511802_512126_-	hypothetical protein	H7BUM7	unidentified_phage	2.2e-07	30.2

DBSCAN-SWA_4

2128569 : 2143415

Streptococcus_phage(76.92%)

integrase,transposase

attL 2130357:2130370|attR 2135147:2135160

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY26291.1\|2128569_2129553_+	multidrug ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.6e-22	35.2
AXY26292.1\|2129539_2130352_+	ABC transporter permease	NA	NA	NA	NA
2130357:2130370	attL	NA	NA	NA	NA
AXY26293.1\|2130377_2130590_+	hypothetical protein	NA	NA	NA	NA
AXY26294.1\|2130711_2131929_-\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
AXY26295.1\|2132010_2132214_-	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
AXY26296.1\|2132197_2132449_+	hypothetical protein	NA	NA	NA	NA
AXY26769.1\|2132592_2134131_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.4e-19	26.9
AXY26297.1\|2134127_2134886_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	7.1e-41	36.7
AXY26298.1\|2135161_2135392_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
2135147:2135160	attR	NA	NA	NA	NA
AXY26299.1\|2135388_2135811_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
AXY26300.1\|2136315_2136669_+	XRE family transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
AXY26301.1\|2136728_2136914_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	3.9e-17	67.9
AXY26302.1\|2137014_2138934_-	tetracycline resistance ribosomal protection protein	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.1
AXY26303.1\|2138949_2139036_-	tetracycline resistance protein	NA	NA	NA	NA
AXY26304.1\|2139310_2140243_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	3.1e-171	99.4
AXY26305.1\|2140239_2141241_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
AXY26306.1\|2141237_2143415_-	hypothetical protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0

DBSCAN-SWA_5

2419619 : 2432580

Streptococcus_phage(30.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY26549.1\|2419619_2421323_-	hypothetical protein	D2KRB9	Lactobacillus_phage	1.3e-13	42.0
AXY26550.1\|2421625_2422894_+\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	2.5e-86	42.2
AXY26551.1\|2423028_2423214_-	hypothetical protein	NA	NA	NA	NA
AXY26552.1\|2423215_2423902_-	hypothetical protein	NA	NA	NA	NA
AXY26553.1\|2423902_2425324_-	sensor histidine kinase	W8CYF6	Bacillus_phage	2.7e-25	28.5
AXY26554.1\|2425320_2426037_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.2e-32	35.8
AXY26555.1\|2426160_2426604_-	single-stranded DNA-binding protein	S5MNH0	Brevibacillus_phage	1.5e-14	37.7
AXY26556.1\|2426672_2427593_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	1.6e-50	39.7
AXY26557.1\|2427612_2428635_-	hypothetical protein	A1IMD5	Streptococcus_phage	3.0e-90	52.6
AXY26558.1\|2428631_2429519_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.0e-10	34.8
AXY26559.1\|2429681_2431406_-	phosphoglucomutase	A0A1X9I671	Streptococcus_phage	3.1e-177	54.0
AXY26560.1\|2431644_2432580_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.1e-87	51.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection