CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025304	Burkholderia pseudomallei strain R15 chromosome R15.1, complete sequence	2 crisprs	NA	2	3	0	0
CP025305	Burkholderia pseudomallei strain R15 chromosome R15.2, complete sequence	2 crisprs	NA	0	0	0	0

Cas Category Instructions

Results visualization

1. CP025304

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CRISPR-Cas detection and classification

Crispr_ID: CP025304_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025304_1

320878-321006

Orphan

Consensus_repeat	Method
GGCTGATCGAAGTGGCTGATCGAAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP025304_1

>merge|CP025304|1|320878-321006|CRISPRCasFinder
GGCGGATCGAGGCGGCTCATCGAAGCGATCAATCGAAGCGATCAATCGAAGCGGCCGATCGAAGCGGCTGATCGAAGTGGCTGATCGAAGTGGCTGATCGAAGTGGCTGATCGAAGTGGCTGATCGAAG

>CP025304|1|1|320878-321006|CRISPRCasFinder
GGCGGATCGAGGCGGCTCATCGAAG	CGATCAATCGAAGCGATCAATCGAAGC
GGCCGATCGAAGCGGCTGATCGAAG	TGGCTGATCGAAGTGGCTGATCGAAGT
GGCTGATCGAAGTGGCTGATCGAAG

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Crispr_ID: CP025304_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025304_2

1651171-1651283

Orphan

Consensus_repeat	Method
CAAGCACGACAAGCACGACAAGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP025304_2

>merge|CP025304|2|1651171-1651283|CRISPRCasFinder
CAAACGCGGCGAGCGCGGCAAACGAGACCAACGCGGTGAGCATTGCAAGCACGACAAGCACGACAAGCACGACAAGCACGACAAGCACGACAAGCATGACAAGCATGACAAGC

>CP025304|2|2|1651171-1651283|CRISPRCasFinder
CAAACGCGGCGAGCGCGGCAAAC	GAGACCAACGCGGTGAGCATTG
CAAGCACGACAAGCACGACAAGC	ACGACAAGCACGACAAGCACGA
CAAGCATGACAAGCATGACAAGC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP025304_1	1.2\|320955\|27\|CP025304\|CRISPRCasFinder	320955-320981	27	CP025304.1	320981-321007	0	1.0
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	974951-974972	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345702-1345723	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345711-1345732	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345720-1345741	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345729-1345750	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345738-1345759	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345747-1345768	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345756-1345777	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345765-1345786	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345774-1345795	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345783-1345804	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345792-1345813	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1345801-1345822	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	1782170-1782191	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP025305.1	2496189-2496210	2	0.909

1. spacer 1.2|320955|27|CP025304|CRISPRCasFinder matches to position: 320981-321007, mismatch: 0, identity: 1.0

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
tggctgatcgaagtggctgatcgaagt	Protospacer
***************************

2. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 974951-974972, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acggcaagcacggcaagcacga	Protospacer
***.********.*********

3. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345702-1345723, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

4. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345711-1345732, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

5. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345720-1345741, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

6. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345729-1345750, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

7. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345738-1345759, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

8. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345747-1345768, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

9. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345756-1345777, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacatgcacga	Protospacer
****** ******** ******

10. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345765-1345786, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacatgcacgacacgcacga	Protospacer
****** ******** ******

11. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345774-1345795, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacacgcacgacacgcacga	Protospacer
****** ******** ******

12. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345783-1345804, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacacgcacgacacgcacga	Protospacer
****** ******** ******

13. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345792-1345813, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacacgcacgacacgcacga	Protospacer
****** ******** ******

14. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1345801-1345822, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacacgcacgacacgcacga	Protospacer
****** ******** ******

15. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 1782170-1782191, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacaagcaccgcaagcacga	Protospacer
*********** .*********

16. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to position: 2496189-2496210, mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
acgacgagcacgacgagcacga	Protospacer
*****.********.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013598	Rhizobium sp. N741 plasmid pRspN741c, complete sequence	71759-71780	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013561	Rhizobium phaseoli strain N841 plasmid pRphaN841d, complete sequence	72312-72333	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	71683-71704	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013508	Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence	71759-71780	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013519	Rhizobium sp. N113 plasmid pRspN113b, complete sequence	71760-71781	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013492	Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence	71757-71778	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013514	Rhizobium sp. N1314 plasmid pRspN1314c, complete sequence	72311-72332	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013497	Rhizobium sp. N621 plasmid pRspN621b, complete sequence	71757-71778	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	71683-71704	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NC_010996	Rhizobium etli CIAT 652 plasmid pB, complete sequence	69522-69543	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	NZ_CP013604	Rhizobium sp. N731 plasmid pRspN731c, complete sequence	72311-72332	2	0.909
CP025304_2	2.2\|1651239\|22\|CP025304\|CRISPRCasFinder	1651239-1651260	22	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1567061-1567082	2	0.909
CP025304_1	1.2\|320955\|27\|CP025304\|CRISPRCasFinder	320955-320981	27	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	1015989-1016015	4	0.852
CP025304_1	1.2\|320955\|27\|CP025304\|CRISPRCasFinder	320955-320981	27	NZ_CP005085	Sphingobium sp. TKS plasmid pTK1, complete sequence	490950-490976	5	0.815
CP025304_1	1.2\|320955\|27\|CP025304\|CRISPRCasFinder	320955-320981	27	NC_009508	Sphingomonas wittichii RW1 plasmid pSWIT02, complete sequence	79837-79863	5	0.815
CP025304_1	1.1\|320903\|27\|CP025304\|CRISPRCasFinder	320903-320929	27	NC_010865	Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence	127776-127802	6	0.778
CP025304_1	1.1\|320903\|27\|CP025304\|CRISPRCasFinder	320903-320929	27	NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	157384-157410	6	0.778
CP025304_1	1.1\|320903\|27\|CP025304\|CRISPRCasFinder	320903-320929	27	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	31326-31352	7	0.741

1. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NZ_CP013598 (Rhizobium sp. N741 plasmid pRspN741c, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

2. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NZ_CP013561 (Rhizobium phaseoli strain N841 plasmid pRphaN841d, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

3. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NZ_CP013502 (Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

4. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NZ_CP013508 (Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

5. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NZ_CP013519 (Rhizobium sp. N113 plasmid pRspN113b, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

6. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NZ_CP013492 (Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

7. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NZ_CP013514 (Rhizobium sp. N1314 plasmid pRspN1314c, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

8. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NZ_CP013497 (Rhizobium sp. N621 plasmid pRspN621b, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

9. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NZ_CP013592 (Rhizobium sp. N871 plasmid pRspN871b, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

10. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NC_010996 (Rhizobium etli CIAT 652 plasmid pB, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

11. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to NZ_CP013604 (Rhizobium sp. N731 plasmid pRspN731c, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
tcgacaagcacgacaagcacta	Protospacer
 ******************* *

12. spacer 2.2|1651239|22|CP025304|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 2, identity: 0.909

acgacaagcacgacaagcacga	CRISPR spacer
ccgccaagcacgacaagcacga	Protospacer
 ** ******************

13. spacer 1.2|320955|27|CP025304|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 4, identity: 0.852

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
gggctgatcgaaggggttgatcgaagg	Protospacer
 ************ **.*********

14. spacer 1.2|320955|27|CP025304|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 5, identity: 0.815

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
tggctgatcgaagtggatgttcgcggg	Protospacer
**************** ** *** .*

15. spacer 1.2|320955|27|CP025304|CRISPRCasFinder matches to NC_009508 (Sphingomonas wittichii RW1 plasmid pSWIT02, complete sequence) position: , mismatch: 5, identity: 0.815

tggctgatcgaagtggctgatcgaagt	CRISPR spacer
tggctgatcgaagtggatgttcgcggg	Protospacer
**************** ** *** .*

16. spacer 1.1|320903|27|CP025304|CRISPRCasFinder matches to NC_010865 (Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence) position: , mismatch: 6, identity: 0.778

cgatcaatcgaagcgatcaatcgaagc	CRISPR spacer
gtagatgtcgaagcgatcaatcgaagc	Protospacer
  *   .********************

17. spacer 1.1|320903|27|CP025304|CRISPRCasFinder matches to NZ_CP021216 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence) position: , mismatch: 6, identity: 0.778

cgatcaatcgaagcgatcaatcgaagc	CRISPR spacer
gtagatgtcgaagcgatcaatcgaagc	Protospacer
  *   .********************

18. spacer 1.1|320903|27|CP025304|CRISPRCasFinder matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 7, identity: 0.741

cgatcaatcgaagcgatcaatcgaagc	CRISPR spacer
gcgctgatcgaagcgatcaatcgaatc	Protospacer
  ....******************* *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP025305

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP025305_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025305_1

2602383-2602475

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025305_1

>merge|CP025305|1|2602383-2602475|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>CP025305|1|1|2602383-2602475|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

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Crispr_ID: CP025305_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025305_2

3005276-3005421

Orphan

Consensus_repeat	Method
GCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCGAAG	PILER-CR
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP025305_2

>merge|CP025305|2|3005276-3005421|PILER-CR,CRISPRCasFinder
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCG

>CP025305|2|1|3005276-3005421|PILER-CR
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAA	TGCCCGAT
CATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAAT	ACCCGATCA
TCGGGATGCTCGATCGCCG

>CP025305|2|2|3005326-3005411|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage