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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP031115 Rubrobacter indicoceani strain SCSIO 08198 chromosome, complete genome 4 crisprs NA 1 10 0 0
CP031117 Rubrobacter indicoceani strain SCSIO 08198 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
CP031116 Rubrobacter indicoceani strain SCSIO 08198 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP031115
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031115_1 1103423-1108466 Orphan I-C
69 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031115_2 1971900-1971962 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031115_3 1972359-1972429 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031115_4 1989157-1989397 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP031115_2 2.1|1971923|16|CP031115|CRISPRCasFinder 1971923-1971938 16 CP031115.1 1971587-1971602 0 1.0
CP031115_2 2.1|1971923|16|CP031115|CRISPRCasFinder 1971923-1971938 16 CP031117.1 41954-41969 2 0.875

1. spacer 2.1|1971923|16|CP031115|CRISPRCasFinder matches to position: 1971587-1971602, mismatch: 0, identity: 1.0

taccgcccgtcgccgt	CRISPR spacer
taccgcccgtcgccgt	Protospacer
****************

2. spacer 2.1|1971923|16|CP031115|CRISPRCasFinder matches to position: 41954-41969, mismatch: 2, identity: 0.875

taccgcccgtcgccgt	CRISPR spacer
tacaggccgtcgccgt	Protospacer
*** * **********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP031115_3 3.1|1972382|25|CP031115|CRISPRCasFinder 1972382-1972406 25 NZ_CP032347 Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence 238056-238080 3 0.88
CP031115_3 3.1|1972382|25|CP031115|CRISPRCasFinder 1972382-1972406 25 NZ_CP032323 Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence 878060-878084 3 0.88
CP031115_3 3.1|1972382|25|CP031115|CRISPRCasFinder 1972382-1972406 25 NZ_CP038031 Rhodococcus ruber strain R1 plasmid unnamed1, complete sequence 34145-34169 3 0.88
CP031115_3 3.1|1972382|25|CP031115|CRISPRCasFinder 1972382-1972406 25 NC_010335 Caulobacter sp. K31 plasmid pCAUL01, complete sequence 122280-122304 3 0.88
CP031115_3 3.1|1972382|25|CP031115|CRISPRCasFinder 1972382-1972406 25 NZ_CP022567 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence 185669-185693 4 0.84
CP031115_3 3.1|1972382|25|CP031115|CRISPRCasFinder 1972382-1972406 25 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 1218711-1218735 4 0.84
CP031115_3 3.1|1972382|25|CP031115|CRISPRCasFinder 1972382-1972406 25 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 594364-594388 4 0.84
CP031115_3 3.1|1972382|25|CP031115|CRISPRCasFinder 1972382-1972406 25 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 1068698-1068722 5 0.8
CP031115_1 1.9|1104040|36|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104040-1104075 36 NC_011887 Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence 23519-23554 7 0.806
CP031115_1 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104624-1104658 35 KJ510412 Mycobacterium phage ZoeJ, complete genome 16235-16269 8 0.771
CP031115_1 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104624-1104658 35 MH834601 Mycobacterium phage BoostSeason, complete genome 16320-16354 8 0.771
CP031115_1 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104624-1104658 35 NC_028759 Mycobacterium phage Mufasa, complete genome 16314-16348 8 0.771
CP031115_1 1.5|1103749|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1103749-1103783 35 NZ_CP032323 Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence 175502-175536 9 0.743
CP031115_1 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104624-1104658 35 MH669013 Gordonia phage Skysand, complete genome 43308-43342 9 0.743
CP031115_1 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104624-1104658 35 MF919542 Gordonia phage Patio, complete genome 43088-43122 9 0.743
CP031115_1 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104624-1104658 35 MK977699 Gordonia Phage Lollipop1437, complete genome 43852-43886 9 0.743
CP031115_1 1.18|1104696|34|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104696-1104729 34 MN694339 Marine virus AFVG_250M667, complete genome 24758-24791 9 0.735
CP031115_1 1.21|1104913|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104913-1104947 35 NC_023068 Streptomyces sp. F11 plasmid pFP12, complete sequence 6138-6172 9 0.743
CP031115_1 1.9|1104040|36|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104040-1104075 36 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 309330-309365 10 0.722
CP031115_1 1.21|1104913|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104913-1104947 35 AP021851 Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome 151266-151300 10 0.714
CP031115_1 1.22|1104985|34|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104985-1105018 34 NZ_AP014580 Burkholderia sp. RPE67 plasmid p2, complete sequence 130230-130263 10 0.706
CP031115_1 1.30|1105564|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1105564-1105598 35 CP042595 Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence 55185-55219 10 0.714
CP031115_1 1.37|1106075|36|CP031115|PILER-CR,CRISPRCasFinder,CRT 1106075-1106110 36 NC_020894 Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence 136110-136145 10 0.722
CP031115_1 1.37|1106075|36|CP031115|PILER-CR,CRISPRCasFinder,CRT 1106075-1106110 36 NC_017766 Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence 136111-136146 10 0.722
CP031115_1 1.63|1107963|34|CP031115|PILER-CR,CRISPRCasFinder,CRT 1107963-1107996 34 NZ_CP025547 Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence 269892-269925 10 0.706
CP031115_1 1.5|1103749|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1103749-1103783 35 NZ_CP020371 Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence 129551-129585 11 0.686
CP031115_1 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104624-1104658 35 NC_008242 Chelativorans sp. BNC1 plasmid 1, complete sequence 183735-183769 11 0.686
CP031115_1 1.22|1104985|34|CP031115|PILER-CR,CRISPRCasFinder,CRT 1104985-1105018 34 NC_016978 Comamonas testosteroni plasmid pI2, complete sequence 50192-50225 11 0.676
CP031115_1 1.30|1105564|35|CP031115|PILER-CR,CRISPRCasFinder,CRT 1105564-1105598 35 NZ_CP054841 Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence 443181-443215 11 0.686

1. spacer 3.1|1972382|25|CP031115|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 3, identity: 0.88

gaccaccgtcgcccccgacggtgcc	CRISPR spacer
caccatcgtcgcccccgacggcgcc	Protospacer
 ****.***************.***

2. spacer 3.1|1972382|25|CP031115|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 3, identity: 0.88

gaccaccgtcgcccccgacggtgcc	CRISPR spacer
caccatcgtcgcccccgacggcgcc	Protospacer
 ****.***************.***

3. spacer 3.1|1972382|25|CP031115|CRISPRCasFinder matches to NZ_CP038031 (Rhodococcus ruber strain R1 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

gaccaccgtcgcccccgacggtgcc	CRISPR spacer
catcaccgtcgcccccgacggtggc	Protospacer
 *.******************** *

4. spacer 3.1|1972382|25|CP031115|CRISPRCasFinder matches to NC_010335 (Caulobacter sp. K31 plasmid pCAUL01, complete sequence) position: , mismatch: 3, identity: 0.88

gaccaccgtcgcccccgacggtgcc	CRISPR spacer
gcccatcgtcgcccccgacggcgcc	Protospacer
* ***.***************.***

5. spacer 3.1|1972382|25|CP031115|CRISPRCasFinder matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 4, identity: 0.84

gaccaccgtcgcccccgacggtgcc	CRISPR spacer
cgtcaccgtcgccgccgacggtgcc	Protospacer
 ..********** ***********

6. spacer 3.1|1972382|25|CP031115|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 4, identity: 0.84

gaccaccgtcgcccccgacggtgcc	CRISPR spacer
ccccaccgtcgccctcgacggcgcc	Protospacer
  ************.******.***

7. spacer 3.1|1972382|25|CP031115|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 4, identity: 0.84

gaccaccgtcgcccccgacggtgcc	CRISPR spacer
ccccaccgtcgccctcgacggcgcc	Protospacer
  ************.******.***

8. spacer 3.1|1972382|25|CP031115|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 5, identity: 0.8

gaccaccgtcgcccccgacggtgcc	CRISPR spacer
ccggaccgtcgcccgcgacggtgcc	Protospacer
    ********** **********

9. spacer 1.9|1104040|36|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 7, identity: 0.806

gggataccgtcgccgtcctgatccgggtcgt-cgcgg	CRISPR spacer
gccacaccgtcgccgtcctgatcggtgtcgtacgct-	Protospacer
*  *.****************** * ***** ***  

10. spacer 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to KJ510412 (Mycobacterium phage ZoeJ, complete genome) position: , mismatch: 8, identity: 0.771

caaagggtgtcgaggccctcgccgccggagtcctt	CRISPR spacer
tagaggttgtcgaggccctcggcgccgggctgctc	Protospacer
.*.*** ************** ******. * **.

11. spacer 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to MH834601 (Mycobacterium phage BoostSeason, complete genome) position: , mismatch: 8, identity: 0.771

caaagggtgtcgaggccctcgccgccggagtcctt	CRISPR spacer
tagaggttgtcgaggccctcggcgccgggctgctc	Protospacer
.*.*** ************** ******. * **.

12. spacer 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NC_028759 (Mycobacterium phage Mufasa, complete genome) position: , mismatch: 8, identity: 0.771

caaagggtgtcgaggccctcgccgccggagtcctt	CRISPR spacer
tagaggttgtcgaggccctcggcgccgggctgctc	Protospacer
.*.*** ************** ******. * **.

13. spacer 1.5|1103749|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.743

gggatgccgtcgccgtccgggtcagcgtccgggtc	CRISPR spacer
ggcattccgtcgccgtccgggtcagcacgcccgcg	Protospacer
** ** ********************.. *  *. 

14. spacer 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to MH669013 (Gordonia phage Skysand, complete genome) position: , mismatch: 9, identity: 0.743

caaagggtgtcgaggccctcgccgccggagtcctt	CRISPR spacer
atcagggtgtcgagggtctcgccgccggacttgct	Protospacer
   ************ .************ *. .*

15. spacer 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to MF919542 (Gordonia phage Patio, complete genome) position: , mismatch: 9, identity: 0.743

caaagggtgtcgaggccctcgccgccggagtcctt	CRISPR spacer
atcagggtgtcgagggtctcgccgccggacttgct	Protospacer
   ************ .************ *. .*

16. spacer 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to MK977699 (Gordonia Phage Lollipop1437, complete genome) position: , mismatch: 9, identity: 0.743

caaagggtgtcgaggccctcgccgccggagtcctt	CRISPR spacer
atcagggtgtcgagggtctcgccgccggacttgct	Protospacer
   ************ .************ *. .*

17. spacer 1.18|1104696|34|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to MN694339 (Marine virus AFVG_250M667, complete genome) position: , mismatch: 9, identity: 0.735

cggtacgggaaactgggacggcggcgggaacgtc-----	CRISPR spacer
cggcccgggaaactgggacggcggt-----cgcctttaa	Protospacer
***. *******************.     **.*     

18. spacer 1.21|1104913|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NC_023068 (Streptomyces sp. F11 plasmid pFP12, complete sequence) position: , mismatch: 9, identity: 0.743

atcaagcccgagtacgtcgcgaagatacgaaccga	CRISPR spacer
gcacaggccgagtacgtcgcgaagatccgccgcga	Protospacer
..  ** ******************* **   ***

19. spacer 1.9|1104040|36|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 10, identity: 0.722

gggataccgtcgccgtcctgatccgggtcgtcgcgg	CRISPR spacer
cgctggctctcgccatcctgatcctggtcgtcgcga	Protospacer
 *   .*. *****.********* **********.

20. spacer 1.21|1104913|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to AP021851 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome) position: , mismatch: 10, identity: 0.714

atcaagcccgagtacgtcgcgaagatacgaaccga	CRISPR spacer
ttcaagcccgagtacgtcggcaagatgaacttcta	Protospacer
 ******************  *****. .  .* *

21. spacer 1.22|1104985|34|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014580 (Burkholderia sp. RPE67 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.706

ctctgaacctgcgcgagaagctcggagacgcgtt	CRISPR spacer
tcctgaaccttcgcgagaagttcggagttgaccg	Protospacer
..******** *********.****** .*  . 

22. spacer 1.30|1105564|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 10, identity: 0.714

atgcgcgcccgtccgcaggcgcgtggtgcgattag	CRISPR spacer
gtccgcgctcgtccgcaggcgcgcggtgagcgcgc	Protospacer
.* *****.**************.**** *  .. 

23. spacer 1.37|1106075|36|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NC_020894 (Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence) position: , mismatch: 10, identity: 0.722

accgaccagcagccgcaccacaggaactcgtggcag	CRISPR spacer
gccgaccagcagcagcaccacacgaaccggcccgac	Protospacer
.************ ******** ****. *.   * 

24. spacer 1.37|1106075|36|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NC_017766 (Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence) position: , mismatch: 10, identity: 0.722

accgaccagcagccgcaccacaggaactcgtggcag	CRISPR spacer
gccgaccagcagcagcaccacacgaaccggcccgac	Protospacer
.************ ******** ****. *.   * 

25. spacer 1.63|1107963|34|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025547 (Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cgggcgtgttaggcgaccagggcggcgatgcggg	CRISPR spacer
cgggcgtggtcggcgaccagggcgccaccacacc	Protospacer
******** * ************* *. ..*.  

26. spacer 1.5|1103749|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 11, identity: 0.686

gggatgccgtcgccgtccgggtcagcgtccgggtc	CRISPR spacer
gcagattgaccgccgtcggggtcagcgtcagggtc	Protospacer
* ..  . ..******* *********** *****

27. spacer 1.17|1104624|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NC_008242 (Chelativorans sp. BNC1 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.686

caaagggtgtcgaggccctcgccgccggagtcctt	CRISPR spacer
tcgagggtgtcgaggctcttgccgccggggagacg	Protospacer
. .*************.**.********.*   . 

28. spacer 1.22|1104985|34|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NC_016978 (Comamonas testosteroni plasmid pI2, complete sequence) position: , mismatch: 11, identity: 0.676

ctctgaacctgcgcgagaagctcggagacgcgtt	CRISPR spacer
ccggcgcgctgcgcgagaagctgggcgacgcggc	Protospacer
*.   .  ************** ** ****** .

29. spacer 1.30|1105564|35|CP031115|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

atgcgcgcccgtccgcaggcgcgtggtgcgattag	CRISPR spacer
gattgcgcccgtccgcgggcgcgtgctgcaggtgt	Protospacer
.  .************.******** ***.. *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP031117
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage