CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP018498	Altererythrobacter sp. B11 DNA, complete genome	1 crisprs	PD-DExK,RT,csa3,DEDDh,DinG	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: AP018498_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018498_2

1941017-1941179

Orphan

Consensus_repeat	Method
TGGTGACCCCTACGGGAATCGAACCCGTGTTTCAGCCGTGAGAGGGCCGCGTCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018498_2

>merge|AP018498|2|1941017-1941179|CRISPRCasFinder
TGGTGACCCCTACGGGAATCGAACCCGTGTTTCAGCCGTGAGAGGGCCGCGTCCTGACCGCTAGACGAAGGGGCCAGGCGCAGGGCGCATGGCGCAATGTGCATCCGGTGGTGACCCCTACGGGAATCGAACCCGTGTTTCAGCCGTGAAAGGGCCGCGTCCT

>AP018498|2|2|1941017-1941179|CRISPRCasFinder
TGGTGACCCCTACGGGAATCGAACCCGTGTTTCAGCCGTGAGAGGGCCGCGTCCT	GACCGCTAGACGAAGGGGCCAGGCGCAGGGCGCATGGCGCAATGTGCATCCGG
TGGTGACCCCTACGGGAATCGAACCCGTGTTTCAGCCGTGAAAGGGCCGCGTCCT

Protein	Signature genes	Signature genes Name	Protein_function
AP018498.1\|BBC72712.1\|1930159_1932262_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
AP018498.1\|BBC72722.1\|1944612_1945158_+\|molybdenum-cofactor-biosysynthesis-protein	unknown	unknown	gnl\|CDD\|225167
AP018498.1\|BBC72717.1\|1939816_1940329_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
AP018498.1\|BBC72718.1\|1940393_1940921_+\|conserved-hypothetical-protein	unknown	unknown	gnl\|CDD\|376775
AP018498.1\|BBC72714.1\|1933266_1936743_-\|conserved-hypothetical-protein	unknown	unknown	gnl\|CDD\|224011
AP018498.1\|BBC72727.1\|1949619_1951368_-\|acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236380
AP018498.1\|BBC72725.1\|1947953_1948973_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
AP018498.1\|BBC72716.1\|1938296_1939202_+\|conserved-hypothetical-protein	unknown	unknown	gnl\|CDD\|187720
AP018498.1\|BBC72711.1\|1929223_1930156_+\|conserved-hypothetical-protein	unknown	unknown	gnl\|CDD\|366246
AP018498.1\|BBC72721.1\|1943983_1944604_+\|conserved-hypothetical-protein	unknown	unknown	gnl\|CDD\|379603
AP018498.1\|BBC72710.1\|1928026_1929130_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
AP018498.1\|BBC72728.1\|1951478_1952405_-\|tRNA-dimethylallyltransferase	unknown	unknown	gnl\|CDD\|234626
AP018498.1\|BBC72719.1\|1941279_1943061_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
AP018498.1\|BBC72726.1\|1949104_1949620_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
AP018498.1\|BBC72724.1\|1947119_1947761_-\|polyisoprenoid-binding-protein	unknown	unknown	gnl\|CDD\|225228
AP018498.1\|BBC72709.1\|1926860_1928015_+\|conserved-hypothetical-protein	unknown	unknown	gnl\|CDD\|274656
AP018498.1\|BBC72715.1\|1937065_1938304_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|340837
AP018498.1\|BBC72723.1\|1945164_1946850_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154
AP018498.1\|BBC72720.1\|1943249_1943996_+\|conserved-hypothetical-protein	unknown	unknown	unknown
AP018498.1\|BBC72713.1\|1932269_1933274_-\|conserved-hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP018498.1\|BBC72712.1\|1930159_1932262_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	4.23834e-68
AP018498.1\|BBC72722.1\|1944612_1945158_+\|molybdenum-cofactor-biosysynthesis-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	3.14597e-22
AP018498.1\|BBC72717.1\|1939816_1940329_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.38626e-34
AP018498.1\|BBC72718.1\|1940393_1940921_+\|conserved-hypothetical-protein	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	4.90661e-67
AP018498.1\|BBC72714.1\|1933266_1936743_-\|conserved-hypothetical-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	2.16227e-154
AP018498.1\|BBC72727.1\|1949619_1951368_-\|acetolactate-synthase-large-subunit	gnl\|CDD\|236380	PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated.	0
AP018498.1\|BBC72725.1\|1947953_1948973_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
AP018498.1\|BBC72716.1\|1938296_1939202_+\|conserved-hypothetical-protein	gnl\|CDD\|187720	cd08651, FMT_core_like_4, Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.	2.07792e-70
AP018498.1\|BBC72711.1\|1929223_1930156_+\|conserved-hypothetical-protein	gnl\|CDD\|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	9.27256e-18
AP018498.1\|BBC72721.1\|1943983_1944604_+\|conserved-hypothetical-protein	gnl\|CDD\|379603	pfam14412, AHH, A nuclease family of the HNH/ENDO VII superfamily with conserved AHH. AHH is a predicted nuclease of the HNH/ENDO VII superfamily of the treble clef fold. The name is derived from the conserved motif, AHH. It is found in bacterial polymorphic toxin systems and functions as a toxin module. Like WHH and LHH, the AHH nuclease contains 4 conserved histidines of which, the first one is predicted to bind a metal-ion and the other three ones are involved in activation of a water molecule for hydrolysis.	2.36666e-10
AP018498.1\|BBC72710.1\|1928026_1929130_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.75435e-16
AP018498.1\|BBC72728.1\|1951478_1952405_-\|tRNA-dimethylallyltransferase	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	2.59882e-118
AP018498.1\|BBC72719.1\|1941279_1943061_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	3.57498e-176
AP018498.1\|BBC72726.1\|1949104_1949620_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.87726e-80
AP018498.1\|BBC72724.1\|1947119_1947761_-\|polyisoprenoid-binding-protein	gnl\|CDD\|225228	COG2353, COG2353, Uncharacterized conserved protein [Function unknown].	8.14037e-47
AP018498.1\|BBC72709.1\|1926860_1928015_+\|conserved-hypothetical-protein	gnl\|CDD\|274656	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.	5.62723e-50
AP018498.1\|BBC72715.1\|1937065_1938304_+\|glycosyl-transferase	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	7.33899e-111
AP018498.1\|BBC72723.1\|1945164_1946850_-\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0

>AP018498.1|BBC72718.1|1940393_1940921_+|conserved-hypothetical-protein
MAAVALLLLLPLMAAIGIGVAATLGRPILFVQERSGLGQRSFHLIKFRTMRNDRDARGDLLPDAMRTSRFGAILRRTRLDELPGLVNVMRGDMALVGPRPLLPETVAAMGHSGLARAEVRPGMTGWAQVTGNTLLSNEQKFARDLWYIENRSWRLDAVILLRTVRVVLLGERLRG
>AP018498.1|BBC72717.1|1939816_1940329_+|DNA-binding-response-regulator
MRKQCGEVRLVFLTQDLDVDYMIEAFGHGAHGFILNDVGCESLLNSLHLVALGEKFLPGKLVDSLPQMSSGGSLMMKGGVGDSPLSDREAEILNCLVVGLPNKLIARRLDLCEATVKVHVKGILRKLGVQNRTQAAIFALNNGLDRTFRVSGDECAVAGDEADAPTPQMA
>AP018498.1|BBC72716.1|1938296_1939202_+|conserved-hypothetical-protein
MPDLILIGAVESTRIALEAAHRAEGWRVRALVTLPPESCGRHSDYCDLAPQACGMGVEIIHAARINDAAVIARIGALRPDLLLVVGWSQICGPDFLAISPGRVLGYHPAPLPRLRGRAVIPWTILLREPVSAGTLFWIDGGTDSGPIVEQEFFLVAPDETARSLYDRHMEVLASLLAKALRRIGQGDAAGIPQKEHLATFAARRVKADGLIAWSQGTDAIDRLIRAVGRPYPGAFTHLGMERVTIWAAVPEPCGSYEAALPGQIVAAAPSHWLVRTGDGLLLVTDWHRADGGVSPIHQRLG
>AP018498.1|BBC72715.1|1937065_1938304_+|glycosyl-transferase
MKIIVHSSLAFSLVNFRGALLAALVAEGHEVTATAPDRDARVEEELARIGVGFIQVPMARASLSPLTDLRTLAAYIGLMLRQRPDVVIAYTQKPIIYGGIAARLAGIGSYYVIMSGLGFVFSPAGAARPALRRCVSLLYRQAISRARAVFVFNSDDRAEMLRHRIIGPHHKVVQIPGSGVDTDHFIARPLPEPPRTVLMIARLMRDKGVREFVESARLVKRLFPEARFRILGRVEEDNPTAIGREELARWAEEGVVELLPETRDVRAHLAEAAIFALPSYYREGLPRTILEALATGRPVVTTALPGCRDAIVEGVTGLLVPPCDPVALADAIMRLLRDPERLAAMSLAARRAAEEKYDVRLVNRMLIDAMELSRRDGETDSPAGSITSPVSSAIFASSGAVLATSREGRPDA
>AP018498.1|BBC72714.1|1933266_1936743_-|conserved-hypothetical-protein
MLDLLDTAKLTDPSPTREAAPDIPPVTQLPGEHRLSEGAPAAMLPSDRERTRTLPRPAPFTLKSKRTLRLIVVAALDLLAVTLTLQIVMVLGYPAMGGGPLHKIGFVGQFALVTTLVLWLNGLYRHSWRFTRLADCIHLVRLVGIALFVAWSVSVAAVPMRLPDLPLLVTIPILHAALLIVVMTGMRIARRQLREARRVQGGTAVVHAPPRAARKAIVLGPPEWASSVIELVRGDPSAGLDVVGALLSEEGDAIGRLSGVPVLGGPEMLASAVVGLEERGRAPACLILCDAAAGSTAAQRAKIVERARKLDLEICRFSSRLGELLKSGEAGASPLLSTARLLGRPEFLMATQIVDECIRGRRILVTGAGGTIGGELSRQLAAFGPAEITLLDHAEHDLYEIDSQMRQACPTLPIRQALCSIRERDAVRAVFEQARPEIVFHAAALKHVPLVEENPCAGVHTNVVGTRNIADAVCEFGARAMVQVSTDKAVNPVGVMGATKRVGEIYSQALDLCGVDDPDAPRFITVRFGNVLGSSGSVVPLFTRQIEHGGPLTVTHPDITRYFMTVREAVQLILQSSSHALKRDTMRGNIYVLDMGEPVRILDLAQQMIRLAGYEPEVDMDIRIVGLRPGEKLFEELFDSCEEQVESSIPGIFEARSRPIPLPLLNQAIRRMERLIAERDEEEIRRVLHNLVRIPSGQADARMPFGDFASLMADYARGHFTVHSSGGETQTALATVTAAPLGQATKEPVPESVFFPASPPVRHVPIYLVKSETTLASRWPSYDPDEIEAVRDILSSGRVNALVHGEHTRNFETSFARFTGARRAIAVNNGTAALELALRALGVGSGHEVIVPARSFFATTSCVVAVGAEPVFADVDPVSQTICPESVERMIGPRTKAIIAVHLNGWPCDIAALKELCDRHRLLLVEDCAQAHGAAVGGQRVGSFGHAAAFSFCTDKIISTAGEGGMVVTSDEDVFLRAWAYKDHGKSHAKVHDGKAGSAFRFIHDSFGSNLRLTEAQAAIGTIQLAKLPDRLARRRANAEMLNRLLQDHPMMSVPQPGADITHAWYKYNLQVRVDRLQARSSVAEIVAELRERGITCGPGSCPDMSKEAAFASREVKTDGDLPSATALGPTNLMLAVDHLFDERHIQAIGSHVREVVA
>AP018498.1|BBC72713.1|1932269_1933274_-|conserved-hypothetical-protein
MPKLGRPPAAKLIATRHISELRPGSLRALFQGGAAVVMIDVDEGAADIWRRMVLKTAEILPWLLSLADIAANHYGGADITTALGDVVYFQPGLHGYIGRKIELDLDEAGRLRCQPDHFRQNGSVVSPDADAMVRCWELVEGIMRALAPQDWRGPSHRAVVQRLKYQPSAEDFSNLAKLTHNGLSRWGRLGYRIDVNRGTLHHRLSGRWVSDAFGVLLAAPGLRGIAKGINSAIAGRIAAEAVGNRVVVERPHLDNRYFSALCGCRQSVRTEFLAQGSWHEVPVGLNRLAIMPGLLAKRDFQIRPLLHRVTYPKDLAGATPDPQTGDVTLLLGAV
>AP018498.1|BBC72712.1|1930159_1932262_+|acyltransferase
MSDGGHLGSGFLTRDSGAVPTAFRPSFYDLLVRKPFNADAPAHPEPVSQCRPYRADIDGLRAIAVWSVVLFHTELGIVSGGFVGVDVFFVISGYLITGILLREQAEGRFSLLDFYERRVRRIFPALFAMLAICSIAALVLMLPADLRDYGQNLAGASGSVSNFTLLAQVDYFDGDAKLKPLLHTWSLGIEEQFYLFWPMLLLLVHRSRALFLTACGAVAAISFGGNLWFLAKKPDEVFYLLPFRAWELLLGGMVAAGVLPILRSVHLAGVAAAAGLALIVYAIVAFSDRMAFPGAAALAPCVGAGLVIWAGRDCSRNVVARLLAAPALVFSGKISYSLYLWHWPVFAFLRYRMIEEPGAVLMLLLLPLTFLCAMLSWHYVERPFRTKRWLPTRRGALLGGAVAVICGVALGSALHMSRGLPGRFPAEVNRLAMQGEETDPFKMCSWRSDYGPHCVIGNPAKVDAMLWGDSHAGTLWAAVEPVSALAGVQYAANSACPPGLELATSAACLNMNRADLRFALDHPEVKVVILAARWSLYLKGRALGLGPAETNAGLPRLRWSDGRPVDASTPAATAAMARDLGRLVAQLLAAGKTVVIVYPVPEVGYDVPFTLARLEQRGEVLDGFVRPLGLYLGRQREAFQMLDALGTHPGLRRVYPQVAICPDNDRCLTNLAGRSLYSDSNHLSPVGARMLSPLIAEALR
>AP018498.1|BBC72711.1|1929223_1930156_+|conserved-hypothetical-protein
MSLKTLLRDLSFSAGEAILSPSAKTRGWMGSLRRAASDWARDAYVLSYPKSGRTWLRTMMGYLVCRQYGLQVDNPMEVQHFWKISSSVPNIGFTHDDYPNLKTGAEVSTDKSAYAGKRIVFLTRDPRDVLVSYYFDARNRMKVIDCDMEHFLFHERGSIDAIVAFYNAWAANRHVPRGFHWITYEAMHDDAKSVLSGTAQFLGLPSVDDALLEEAVRFASFDNMRRTELKDGFRHERLRPADMNNPDSYKVRRGKIGGYVDYFNVEMTTYIDDYIAANLDPFFACYRRGGSAGPERAPDMLPSTPRPGCA
>AP018498.1|BBC72710.1|1928026_1929130_+|acyltransferase
MAANAQSEAARQGITRSAAQRDFNAATHALRGFASLAVFWAHLLGGTAEHIYAHDERYVGLIHAPWCFGRWGVVLFFAISGFVILPSIRRYSLGEFALRRFLRLYPLFLAFSVMFVVLNALTNEYPGTNSPGAVVSGLLFLNLFSHTDQLTPNAWSLTYEVMFYTLAAGGYFLAVTRRSAIGGAIAAVLGALFLLRYPIAAFFLGGVLVRLACDAGLRPPPGAVRSGEVLYGLACIALASSFHFDFSQADMANPFAWALMAATIGYFYFAVQPESLTTLAARSRILIYLGTVSYSLYLVHPYVYYVMRTLFQRAGLFTADWAFSMALFIAVTTPVALALTHLAHKAFEVGPYEWFFRQRIYRKQRAG
>AP018498.1|BBC72709.1|1926860_1928015_+|conserved-hypothetical-protein
MMLMHRAILAMPRLNANEDEARVAVLPLGADESFAEGDLLFTVETTKAANDVIAPCAGRVCRLLAAVDDLVPVGGPICEVELEQDVPVGELELTWIDRDADEALPVRTERHVSAKARQRAQELGVDIDEIRTANGEIRVRDVERLAASPSARRAKTTPSPAIRNRFGPADAVILGGAGHARTIMDALAGAGFRLVGAVDQAIPGGTRVLDELQVLGPEAMLAELRESGLRYAFIGVGGAVSNASRRKVFEKARSLGFELPPLVAKSAYLGRGSTLGAASYCLPGSSVGAAVTIGENCIVNQNAVICHDSQIGDDVHLAPNAVVAGHCHIGSGSTLGMCATLINGCRIGTDCLVHNNVSVTTDVADGAVLTLADALARMPTRLGT
>AP018498.1|BBC72719.1|1941279_1943061_-|single-stranded-DNA-specific-exonuclease-RecJ
MASLSAVLGVERSLSGKVWRWRGGNMALQGGAAGLEDDIVTQLLLARGVPREDLELHRSPSLRGFLPDPSAFRDMDQAAERIAESVIAREAVTVYGDYDVDGATSAALLIRLYRMLGHDARHYIPDRLLEGYGPSGEALVRLGEEGSSLVVTVDCGAMAHEALGMAHDAGIDVIVVDHHKCSADLPRAFALVNPNRLDETDLAAAHGHLAAVGVAFLLAVAVVRTLRRRGFFADRREPDLMSLLDLVALGTVADVAAIRGLNRAFVAQGLKVMARRDNIGLAALIDASRLNRAPSCSDCGFALGPRINAGGRVGEATLGVRLLTTQDADEARMISAQLSQLNEERRAIEAAVQEAAEAQLAAQHNRAVQVLSGRGWHPGVIGIVAGRIKERTGKPALVIALDEESGLGKGSGRSIAGVDLGAAIIGARDHGLLVAGGGHAMAAGLTVAEGKLEAFAEWLDERLAGPVARASAEQVTTLDLSIAPRGLTPQLVETLESAGPFGVGWPGPRVAVGPVHLIKADVVGNDHLRLIAGGQDGGSFKAIGFRMADSEMGQALLHGAQGRRLWLAGRAKIDDWGSQLKAELHLEDAAWSG
>AP018498.1|BBC72720.1|1943249_1943996_+|conserved-hypothetical-protein
MAELAILFPRGQRPAATDVAALLAGVGEASISLDPARAPGGGRVAGRDWLELLMGGITFDLAGLAPGSAEGLPKAAHVFALPPGTPERDLEAISLRPGPHLSIGGGILPLPVLRCLAALGARLSLLSGAEAVAWAPARSWSGPAHFRDSVNGWLAGGVFPGFGLAALSPQPGGAMVSEGLAAFTGQELRISPALARDRVVGAKLGLRLLHWMVENGTLRAPRLLTGPEGETLRLDLSRGGSVVEVWKA
>AP018498.1|BBC72721.1|1943983_1944604_+|conserved-hypothetical-protein
MESLGGAEGNPGRSAPPQRHRPSLSFHSVNRAGQAGHDPGLQRHHLLPCQLLSQACFGPLFASLGCAAMGFDDFRRNGVLLPATGSAAMRLGLPLHRGPHRRYNAMVAERMGQIERAWALLRRVAPDRARLDALMRIDLLQRALRRRLLRPAASAMRLNSRCPLGAGLDFSSLDSMAEMLWGETERRGSEGAEREAASLAPGVAAG
>AP018498.1|BBC72722.1|1944612_1945158_+|molybdenum-cofactor-biosysynthesis-protein
MAPHVLTVARSPRHGFAKQSCTRIRLLPGLGVDGDAHAGVTVQHLSRKRQFPHAPNLRQVHLLQAELLAELAEQGFAVAPGALGENVTTLGMDLLSLPRGTRLRLGAHALVELTGLRNPCRQIDENIGPGAMAAVLARAADGSLIRKAGVMAVVLEAGEVQAGDPILVAQLPVEAEPLQPV
>AP018498.1|BBC72723.1|1945164_1946850_-|2-isopropylmalate-synthase
MPMLKEPGRKYRPFPPINLPDRQWPSRVIEAAPRWLSTDLRDGNQSIIDPMDSVKKNRFFDLLVEIGVKEIEVGFPSAGKTEFDFIAGLVRGGRVPDDVLVQVLTQSRADLIEKSFESLEGARAAIVHLYNAVSPAWREIVFRMSKPEVKAIAVKGAQLLRDEAAKRPETEWHFQYSPETFSTAELDFSLEVCEAVMEVLRPTPEHPIILNLPATVEAATPNVYADQIEYFCRNLPNRDSAVISLHTHNDRGTGVAAAELGLMAGADRVEGCLFGNGERTGNCCLVTVALNLYTQGVNPQLDFSDIDRVIETVEYCNQLPVPARHPYGGELVFTAFSGSHQDAIKKGFEAQGQRNDEEWRVPYLPIDPADLGRNYEAVIRVNSQSGKGGFAWVLEQGQGLKLPKKLQADFSRHVQNMADELGRELDAADIWDSFQHAYFIGADHATFDLIDYEETRASDGTRLFAGTIRVGGKQQQVSGRGKGLVSSVLTTLRQTFGLQLEVVDYTEHALGKGTDARAATYLECALPDGSTVWGVGIDEDVATASVRAILSAANGAVREPG
>AP018498.1|BBC72724.1|1947119_1947761_-|polyisoprenoid-binding-protein
MRKWILPLAAAASIATVAVGSLQAQGDAPAAVDVSTIEAGSYTADPSHSMVGWSVNHLGFNDYLGIFGDVSGTLTLDPANPAASKVDVMIPIASVTVPSAGLKDHLLRAGKDGGKPDFFGPSPAPAHFVSTKVEKTGDTTATITGDLTLNGVTKPVTIEASVSGAGTNGMSKKKTVGFHGTTTLKRSDFGVDFGIPFGISDEVELYVSTAFEK
>AP018498.1|BBC72725.1|1947953_1948973_-|ketol-acid-reductoisomerase
MKVYYDADADLNLITDKKIAVLGYGSQGHAHAQNLRDSGVKDVAIALRPGSASAKKAEGAGFKVMSNSEAAEWADVLMILAPDEHQAAIWENDLKGRMKPGAALAFAHGLNIHFGLIEAPEDIDVIMIAPKGPGHTVRGEYVKGGGVPCLIAVHQDASGNAHDVALAYASGVGGGRSGVIETNFKEECETDLFGEQAVLCGGITHLIQAGFETLVEAGYAPEMAYFECLHETKLIVDLLYEGGIANMRYSISNTAEYGDITTGPRIITDETKAEMKRVLADIQSGRFVKNFVLDNRAGQPELKASRKAAAAHPIEQTGARLRAMMPWISANKLVDQEKN
>AP018498.1|BBC72726.1|1949104_1949620_-|acetolactate-synthase-small-subunit
MKIQHRDSERHVLTILVDNEAGILAKIAGLFTARGYNIDSLTVADISEDHAVSRITIVTKGPPPVIDQIMAQLERLVPVHKVTDLTDEGPHVERELALVKVAGRGEHRVEALRLADVFRATAIDTTTSSFIFEITGAPEKIDSFVALMRELGLVEVGRTGIVGMMRGAEGA
>AP018498.1|BBC72727.1|1949619_1951368_-|acetolactate-synthase-large-subunit
MIVSEERSGAAILIESLVRQGVEYVFGYPGGAVLPIYDELFSDKRIRHILVRHEAGAAHAAEGYARSTGKPGVVLVTSGPGATNAITGIADAFMDSIPLVVITGQVATNLIGTDAFQEADTVGLTRHCTKHNYLVKDPDALAATIDEAFEIATTGRPGPVVVDIPKNVQVATAMLSAHAPQRPRRYQPRMVAAVEEIADAIELIAGARRPVFYTGGGVINSGPRASELLRQLQALTGAPVTSTLMGLGAFPTDHADWLGMLGMHGTYEANMAMNECDVMVNIGARFDDRVTGRLDAFSPHSKKIHIDIDRASINKVVEVDLGIVGDCATVLEQLIAAWDGRKPADLAEWKQRVEGWRERRSLSYPARPDSIMPQLAVERLYAATRHLDPIITTEVGQHQMWAAQYFGFQGPNKWLTSGGLGTMGYGLPAAIGAQLGNPDALVIDIAGEASIQMNIQELGTASQFRLPVKVFILNNEYMGMVRQWQELTYESRYSNSYSDSLPDFVRLAEAYGWKGIRIHQESELDAGIAAMMAHDGPVIVDCQVSKDANCFPMIPSGAAHTEMLLYGDAHAGTMEDEAKALV
>AP018498.1|BBC72728.1|1951478_1952405_-|tRNA-dimethylallyltransferase
MALIAGPTASGKSDLAVELALELARRGSRGVVINADSAQVYADLAALSARPTEAEMRGVEHLLFGAWDGAAACSAADWSEAARRTIEQAHRAGDVPILVGGTGLYLRSLLDGIAPIPPIDPTIREEVRALPTAEAYAALQREDPQRAAALNPGDSSRIARALEVIRSTGTSMVQWFGHASGGIGEAITLFPLVLLPDRDWLYERCDLRFARMLDRGAVAEVEALLARCLSPELPVMRAIGVPEIAGWLRGEWSREEAVARGQQATRNYAKRQFTWFRRQPPEDWQRTGNENNSIPLRFETLFRHLGLT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	1202292-1202319	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	788075-788102	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	1154238-1154265	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	1216760-1216787	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1830445-1830472	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	79677-79704	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1575620-1575647	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1399591-1399618	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	1132608-1132635	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	340657-340684	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	1390453-1390480	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	1216169-1216196	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	519208-519235	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	519724-519751	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	586743-586770	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	145582-145609	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	1403283-1403310	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	1456044-1456071	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	2097294-2097321	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	719614-719641	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	508300-508327	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	519209-519236	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP016462	Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence	185770-185797	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	140293-140320	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	423657-423684	5	0.821
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_KM406416	Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence	171963-171990	6	0.786
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP025015	Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence	200046-200073	6	0.786
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP020950	Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence	90670-90697	6	0.786
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1270052-1270079	6	0.786
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1141073-1141100	6	0.786
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1598467-1598494	7	0.75
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP016821	Rhodococcus sp. p52 plasmid pDF01, complete sequence	125164-125191	7	0.75
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	89839-89866	7	0.75
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	106474-106501	7	0.75
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	NZ_CP012918	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence	92030-92057	7	0.75
AP018498_1	1.1\|369873\|28\|AP018498\|CRISPRCasFinder	369873-369900	28	MN602268	Bacteriophage DSS3_MAL1, complete genome	24157-24184	8	0.714

1. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

2. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

3. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

4. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

5. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

6. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
tgccatggcggcggtcgcagccgcgcgg	Protospacer
.* ******* **************  *

7. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

8. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

9. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

10. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

11. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

12. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

13. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

14. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

15. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

16. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

17. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

18. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

19. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
cgacatgtcgtccgtcgcagccgctgct	Protospacer
******* **** *********** *.

20. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

21. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

22. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ctggatcgcgtcgggcgcagccgcggtg	Protospacer
* . ** ******* *************

23. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP016462 (Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
cgcgatggcgtcggtcgcggccgcgttc	Protospacer
**  **************.****** *

24. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
cgtgctggcgtcgctcgcggccgcggtg	Protospacer
**   ******** ****.*********

25. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 5, identity: 0.821

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
cgacatggcggcggtcgcatccgtgtcg	Protospacer
********** ******** ***.* .*

26. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 6, identity: 0.786

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
cgacgtggcgtcggtcgcatccgcccaa	Protospacer
****.************** ****   .

27. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP025015 (Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence) position: , mismatch: 6, identity: 0.786

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
tgcataggcatcggtcgcagccgcggtg	Protospacer
.*    ***.******************

28. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP020950 (Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence) position: , mismatch: 6, identity: 0.786

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
gctcatggcgtcgatcgcagcctcggcg	Protospacer
   **********.******** ***.*

29. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 6, identity: 0.786

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ttgcgtggcgacgatcgcagccgcggtg	Protospacer
. .*.***** **.**************

30. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 6, identity: 0.786

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ttgcgtggcgacgatcgcagccgcggtg	Protospacer
. .*.***** **.**************

31. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.75

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ccggcccgcgtcggtcgcacccgcggtg	Protospacer
* .  . ************ ********

32. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP016821 (Rhodococcus sp. p52 plasmid pDF01, complete sequence) position: , mismatch: 7, identity: 0.75

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ggttgaggcgtcggtcgccgccgcggtt	Protospacer
 * .. ************ ********

33. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 7, identity: 0.75

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ggctcgggcgacggtcgcagccgcggtc	Protospacer
 * .  **** ****************

34. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 7, identity: 0.75

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ggctcgggcgacggtcgcagccgcggtc	Protospacer
 * .  **** ****************

35. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to NZ_CP012918 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence) position: , mismatch: 7, identity: 0.75

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
ggtggtggcgtcggccgcagccgcggcc	Protospacer
 *  .*********.***********.

36. spacer 1.1|369873|28|AP018498|CRISPRCasFinder matches to MN602268 (Bacteriophage DSS3_MAL1, complete genome) position: , mismatch: 8, identity: 0.714

cgacatggcgtcggtcgcagccgcggtg	CRISPR spacer
gatggtggtgtcggtcgcagccgcggac	Protospacer
 .  .***.*****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

756637 : 769454

Caulobacter_phage(22.22%)

tail,capsid,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBC71593.1\|756637_758962_-	conserved hypothetical protein	A0A1V0DYB0	Dinoroseobacter_phage	3.5e-30	42.6
BBC71594.1\|758973_759540_-\|tail	tail tape measure protein	D6PEW0	uncultured_phage	3.9e-07	35.7
BBC71595.1\|759532_759850_-	conserved hypothetical protein	NA	NA	NA	NA
BBC71596.1\|759846_760254_-\|tail	phage tail protein	NA	NA	NA	NA
BBC71597.1\|760283_760676_-	conserved hypothetical protein	NA	NA	NA	NA
BBC71598.1\|760665_760851_-	conserved hypothetical protein	NA	NA	NA	NA
BBC71599.1\|760847_761396_-	conserved hypothetical protein	NA	NA	NA	NA
BBC71600.1\|761490_762624_-\|capsid	phage capsid protein	Q8W627	Enterobacteria_phage	1.7e-78	45.6
BBC71601.1\|762704_763094_-	peptidase U35	Q6JIM8	Burkholderia_virus	2.3e-11	33.8
BBC71602.1\|763090_763399_-	conserved hypothetical protein	K4I011	Acidithiobacillus_phage	1.0e-09	47.4
BBC71603.1\|763395_764553_-\|portal	portal protein	W8ECU7	Geobacillus_phage	1.9e-45	37.0
BBC71604.1\|764911_765481_-	hypothetical protein	A0A0K1LMR9	Caulobacter_phage	2.5e-22	35.7
BBC71605.1\|765490_766873_-	ATP-binding protein	A0A0K1LMR9	Caulobacter_phage	1.8e-74	37.7
BBC71606.1\|766838_767360_-	conserved hypothetical protein	NA	NA	NA	NA
BBC71607.1\|767545_768181_+	cytochrome b561	NA	NA	NA	NA
BBC71608.1\|768203_769454_-	8-amino-7-oxononanoate synthase	V5LQ39	Emiliania_huxleyi_virus	1.5e-35	29.5

DBSCAN-SWA_2

2509859 : 2553954

Stx2-converting_phage(40.0%)

integrase,transposase

attL 2516627:2516643|attR 2556424:2556440

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBC73270.1\|2509859_2510138_+\|transposase	transposase	NA	NA	NA	NA
BBC73271.1\|2510179_2511031_+\|integrase	integrase	NA	NA	NA	NA
BBC73272.1\|2511027_2511450_-	hypothetical protein	NA	NA	NA	NA
BBC73273.1\|2511676_2512336_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73274.1\|2512399_2512945_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73275.1\|2512980_2513478_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73276.1\|2513533_2514811_-	monooxygenase	NA	NA	NA	NA
BBC73277.1\|2514906_2515875_+	conserved hypothetical protein	NA	NA	NA	NA
BBC73278.1\|2515878_2517381_-	aldehyde dehydrogenase	NA	NA	NA	NA
2516627:2516643	attL	NA	NA	NA	NA
BBC73279.1\|2517393_2519469_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
BBC73280.1\|2519475_2519781_-	ethyl tert-butyl ether degradation protein EthD	NA	NA	NA	NA
BBC73281.1\|2519803_2521099_-	phenylacetate-CoA ligase	NA	NA	NA	NA
BBC73282.1\|2521123_2523154_-	bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase	NA	NA	NA	NA
BBC73283.1\|2523176_2523968_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA
BBC73284.1\|2524059_2524527_+	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA
BBC73285.1\|2524519_2525722_+	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA
BBC73286.1\|2525787_2526771_+	phenylacetate-CoA oxygenase subunit PaaA	NA	NA	NA	NA
BBC73287.1\|2526784_2527069_+	phenylacetate-CoA oxygenase subunit PaaB	NA	NA	NA	NA
BBC73288.1\|2527068_2527839_+	phenylacetic acid degradation protein	NA	NA	NA	NA
BBC73289.1\|2527825_2528323_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA
BBC73290.1\|2528333_2529407_+	phenylacetate-CoA oxygenase	E3SNZ1	Prochlorococcus_phage	5.6e-07	41.0
BBC73291.1\|2529475_2530063_+	TetR family transcriptional regulator	NA	NA	NA	NA
BBC73292.1\|2530162_2530534_+	conserved hypothetical protein	NA	NA	NA	NA
BBC73293.1\|2530901_2533448_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73294.1\|2533522_2534698_-	glycerol dehydrogenase	NA	NA	NA	NA
BBC73295.1\|2534721_2535237_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73296.1\|2535718_2536567_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73297.1\|2536612_2537338_-	2-deoxy-D-gluconate 3-dehydrogenase	A0A0M4JSW6	Mollivirus	5.8e-08	39.8
BBC73298.1\|2537378_2538164_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
BBC73299.1\|2538163_2539369_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA
BBC73300.1\|2539365_2540016_-	succinyl-CoA--3-ketoacid-CoA transferase	NA	NA	NA	NA
BBC73301.1\|2540012_2540723_-	succinyl-CoA--3-ketoacid-CoA transferase	NA	NA	NA	NA
BBC73302.1\|2540916_2541693_-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	NA	NA	NA	NA
BBC73303.1\|2541689_2542712_-	NADH oxidase	NA	NA	NA	NA
BBC73304.1\|2542733_2543240_-	benzoate 1,2-dioxygenase small subunit	NA	NA	NA	NA
BBC73305.1\|2543236_2544619_-	benzoate 1,2-dioxygenase alpha subunit	NA	NA	NA	NA
BBC73306.1\|2544647_2545538_-	catechol 1,2-dioxygenase	NA	NA	NA	NA
BBC73307.1\|2545574_2545865_-	muconolactone delta-isomerase	NA	NA	NA	NA
BBC73308.1\|2545880_2547029_-	muconate cycloisomerase	NA	NA	NA	NA
BBC73309.1\|2547135_2548059_+	LysR family transcriptional regulator	NA	NA	NA	NA
BBC73310.1\|2548240_2548504_+	AlpA family transcriptional regulator	NA	NA	NA	NA
BBC73311.1\|2548484_2549798_-\|integrase	integrase	A0A2L0V119	Agrobacterium_phage	1.8e-79	39.6
BBC73312.1\|2550720_2551485_+	conserved hypothetical protein	NA	NA	NA	NA
BBC73313.1\|2551532_2551880_+\|transposase	transposase	NA	NA	NA	NA
BBC73314.1\|2551876_2552218_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	8.2e-29	52.4
BBC73315.1\|2552289_2553954_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-110	44.3
2556424:2556440	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2588003 : 2610428

Bacillus_phage(20.0%)

terminase,integrase,capsid,transposase

attL 2589389:2589403|attR 2611227:2611241

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBC73350.1\|2588003_2588273_+\|transposase	transposase	A0A1P8CWP5	Bacillus_phage	5.0e-05	31.5
BBC73351.1\|2588320_2589145_+\|transposase	transposase	U5P429	Shigella_phage	1.8e-85	59.9
BBC73352.1\|2589358_2589946_+	TetR family transcriptional regulator	NA	NA	NA	NA
2589389:2589403	attL	NA	NA	NA	NA
BBC73353.1\|2590205_2590847_+	structural protein MipA	NA	NA	NA	NA
BBC73354.1\|2591367_2592699_-\|integrase	integrase	Q8W6M6	Sinorhizobium_phage	2.3e-71	37.3
BBC73355.1\|2593376_2594141_-\|integrase	integrase	S5WIU1	Leptospira_phage	3.9e-47	44.1
BBC73356.1\|2594239_2594506_-\|transposase	transposase	NA	NA	NA	NA
BBC73357.1\|2594752_2596549_+	resolvase	R9TP69	Rhizobium_phage	6.6e-85	34.7
BBC73358.1\|2596566_2597892_-\|integrase	integrase	A0A2H4J5F8	uncultured_Caudovirales_phage	2.5e-12	24.1
BBC73359.1\|2598317_2598800_+	conserved hypothetical protein	NA	NA	NA	NA
BBC73360.1\|2598922_2599984_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73361.1\|2599986_2600526_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73362.1\|2600522_2601122_-	conserved hypothetical protein	A0A1B2APW1	Phage_Wrath	3.9e-10	35.5
BBC73363.1\|2601121_2602393_-\|capsid	major capsid protein	NA	NA	NA	NA
BBC73364.1\|2602394_2602742_-	HNH endonuclease	A0A0U4JWW4	Bacillus_phage	3.8e-05	34.6
BBC73365.1\|2602732_2604193_-\|terminase	terminase	NA	NA	NA	NA
BBC73366.1\|2604360_2604726_-	hypothetical protein	NA	NA	NA	NA
BBC73367.1\|2604897_2605539_-	hypothetical protein	NA	NA	NA	NA
BBC73368.1\|2605794_2607105_-\|transposase	transposase	NA	NA	NA	NA
BBC73369.1\|2607222_2607750_-	hypothetical protein	A0A0F7L738	uncultured_marine_virus	1.2e-15	40.2
BBC73370.1\|2607742_2608348_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73371.1\|2608344_2608551_-	hypothetical protein	NA	NA	NA	NA
BBC73372.1\|2608547_2608736_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73373.1\|2608815_2609172_-	conserved hypothetical protein	NA	NA	NA	NA
BBC73374.1\|2609171_2610428_-\|integrase	integrase	A0A0R6PIF4	Moraxella_phage	3.3e-27	25.2
2611227:2611241	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2850025 : 2886686

Leptospira_phage(28.57%)