CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP032173	Klebsiella pneumoniae strain AR_0160 plasmid unnamed1, complete sequence	0 crisprs	csa3	2
CP032174	Klebsiella pneumoniae strain AR_0160 plasmid unnamed2, complete sequence	0 crisprs	NA	0
CP032175	Klebsiella pneumoniae strain AR_0160 chromosome, complete genome	0 crisprs	DEDDh,csa3,cas3,WYL,DinG	6

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

383676 : 390581

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ25091.1\|383676_385155_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.9e-29	27.9
AXZ25092.1\|385151_385874_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AXZ25093.1\|386192_387554_+	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
AXZ29605.1\|387799_388693_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
AXZ25094.1\|388933_389707_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
AXZ29606.1\|389717_390581_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_2

3882070 : 3891534

Dickeya_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ28248.1\|3882070_3883186_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
AXZ28249.1\|3883182_3885123_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
AXZ28250.1\|3885062_3885266_+	hypothetical protein	NA	NA	NA	NA
AXZ28251.1\|3885199_3885421_-	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AXZ28252.1\|3885746_3886064_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AXZ28253.1\|3886094_3888374_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AXZ28254.1\|3888494_3888713_-	translation initiation factor IF-1	NA	NA	NA	NA
AXZ28255.1\|3889066_3889768_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AXZ28256.1\|3889812_3891534_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	9.0e-15	34.8

DBSCAN-SWA_3

4006607 : 4019041

Pectobacterium_phage(54.55%)

protease,integrase

attL 3996077:3996093|attR 4015775:4015791

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3996077:3996093	attL	NA	NA	NA	NA
AXZ28340.1\|4006607_4007267_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	3.2e-37	46.6
AXZ28341.1\|4007536_4009189_+	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA
AXZ28342.1\|4009464_4010493_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	4.0e-95	54.4
AXZ28343.1\|4010496_4010721_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	5.9e-20	66.7
AXZ28344.1\|4010686_4010881_-	hypothetical protein	H9C154	Pectobacterium_phage	6.3e-10	60.7
AXZ28345.1\|4010930_4011116_-	hypothetical protein	NA	NA	NA	NA
AXZ28346.1\|4011117_4011684_-	hypothetical protein	H9C156	Pectobacterium_phage	3.3e-51	61.5
AXZ28347.1\|4011683_4013813_-	hypothetical protein	H9C157	Pectobacterium_phage	2.8e-98	34.3
AXZ28348.1\|4013842_4014088_-	hypothetical protein	A0A1B1W282	Salmonella_phage	3.7e-15	59.5
AXZ29754.1\|4014095_4014329_-	hypothetical protein	NA	NA	NA	NA
AXZ28349.1\|4015270_4015657_-	helix-turn-helix domain-containing protein	A5VW98	Enterobacteria_phage	3.4e-15	57.8
AXZ28350.1\|4015737_4015932_+	transcriptional regulator	NA	NA	NA	NA
4015775:4015791	attR	NA	NA	NA	NA
AXZ28351.1\|4015992_4016439_+	hypothetical protein	H9C162	Pectobacterium_phage	5.7e-30	56.1
AXZ29755.1\|4016522_4016681_+	adenylate cyclase	NA	NA	NA	NA
AXZ29756.1\|4016698_4017667_+	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	5.5e-38	73.5
AXZ28352.1\|4018276_4019041_-	hypothetical protein	U5N3V8	Enterobacteria_phage	5.3e-36	36.0

DBSCAN-SWA_4

4172789 : 4241395

Enterobacteria_phage(51.43%)

terminase,portal,tail,capsid,tRNA,integrase,plate

attL 4199993:4200010|attR 4236151:4236168

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ29767.1\|4172789_4173896_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AXZ28488.1\|4173952_4174411_-	NUDIX hydrolase	NA	NA	NA	NA
AXZ28489.1\|4174427_4175078_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AXZ28490.1\|4175318_4176569_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
AXZ28491.1\|4176841_4177555_-	ArsR family transcriptional regulator	NA	NA	NA	NA
AXZ28492.1\|4177551_4177944_-	amino acid-binding protein	NA	NA	NA	NA
AXZ28493.1\|4177936_4178260_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AXZ28494.1\|4178502_4178682_+	hypothetical protein	NA	NA	NA	NA
AXZ28495.1\|4178708_4178936_-	DUF1272 domain-containing protein	NA	NA	NA	NA
AXZ28496.1\|4179048_4180242_-	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
AXZ28497.1\|4180863_4181049_+	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA
AXZ28498.1\|4181139_4181634_+	ferritin-like domain-containing protein	NA	NA	NA	NA
AXZ28499.1\|4181660_4182167_+	ferritin-like domain-containing protein	NA	NA	NA	NA
AXZ28500.1\|4182183_4183071_+	manganese catalase family protein	NA	NA	NA	NA
AXZ28501.1\|4183126_4184533_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
AXZ28502.1\|4184529_4185540_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
AXZ28503.1\|4185655_4185853_-	hypothetical protein	NA	NA	NA	NA
AXZ28504.1\|4186431_4187064_+	DNA-binding protein	NA	NA	NA	NA
AXZ28505.1\|4187103_4187283_+	hypothetical protein	NA	NA	NA	NA
AXZ28506.1\|4187680_4188367_+	EAL domain-containing protein	NA	NA	NA	NA
AXZ28507.1\|4188677_4190186_-	UbiD family decarboxylase	NA	NA	NA	NA
AXZ28508.1\|4191202_4192987_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
AXZ28509.1\|4193060_4194269_-	HD domain-containing protein	NA	NA	NA	NA
AXZ28510.1\|4194571_4195615_+	type II asparaginase	NA	NA	NA	NA
AXZ28511.1\|4195869_4196061_-	hypothetical protein	NA	NA	NA	NA
AXZ28512.1\|4196276_4197191_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
AXZ28513.1\|4197280_4197919_+	leucine efflux protein	NA	NA	NA	NA
AXZ28514.1\|4198049_4198313_+	DUF2534 family protein	NA	NA	NA	NA
AXZ28515.1\|4198371_4198497_-	hypothetical protein	NA	NA	NA	NA
AXZ29768.1\|4198614_4198689_-	hypothetical protein	NA	NA	NA	NA
AXZ28516.1\|4198688_4198790_-	hypothetical protein	NA	NA	NA	NA
AXZ28517.1\|4198847_4199861_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
4199993:4200010	attL	NA	NA	NA	NA
AXZ28518.1\|4200126_4201110_-\|integrase	integrase	Q83VS6	Escherichia_phage	8.4e-151	79.8
AXZ28519.1\|4201225_4201525_-	XRE family transcriptional regulator	Q1JS83	Enterobacteria_phage	3.0e-43	85.9
AXZ28520.1\|4201646_4201925_+	hypothetical protein	Q1JS60	Enterobacteria_phage	2.0e-41	87.6
AXZ28521.1\|4201945_4202164_+	DUF4761 domain-containing protein	A0A0M5M1I3	Salmonella_phage	4.7e-06	49.1
AXZ28522.1\|4202179_4202557_+	hypothetical protein	NA	NA	NA	NA
AXZ28523.1\|4202572_4202845_+	hypothetical protein	NA	NA	NA	NA
AXZ28524.1\|4202913_4203138_+	hypothetical protein	NA	NA	NA	NA
AXZ28525.1\|4203134_4203701_+	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	3.6e-13	32.6
AXZ29769.1\|4203709_4203937_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.9e-05	41.0
AXZ28526.1\|4203933_4204890_+	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	6.6e-84	52.9
AXZ28527.1\|4204907_4207535_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	1.7e-190	50.7
AXZ28528.1\|4208069_4208768_+	hypothetical protein	NA	NA	NA	NA
AXZ28529.1\|4208840_4209443_+	hypothetical protein	NA	NA	NA	NA
AXZ28530.1\|4209433_4209889_+	hypothetical protein	NA	NA	NA	NA
AXZ28531.1\|4210244_4210925_+	DUF2971 domain-containing protein	NA	NA	NA	NA
AXZ28532.1\|4211060_4211273_-	hypothetical protein	NA	NA	NA	NA
AXZ28533.1\|4211459_4212521_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.2e-142	68.7
AXZ28534.1\|4212514_4214242_-	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	2.6e-232	67.9
AXZ28535.1\|4214398_4215238_+\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	5.6e-95	66.3
AXZ28536.1\|4215247_4216282_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.6e-96	50.0
AXZ28537.1\|4216331_4217189_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.1e-69	58.1
AXZ28538.1\|4217301_4217817_+\|capsid	capsid assembly protein	A0A0A7NPU2	Enterobacteria_phage	4.1e-40	49.4
AXZ28539.1\|4217816_4218017_+\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
AXZ28540.1\|4218007_4218292_+\|tail	phage tail protein	NA	NA	NA	NA
AXZ28541.1\|4218288_4218834_+	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
AXZ29770.1\|4218845_4219175_+	DUF2570 domain-containing protein	NA	NA	NA	NA
AXZ28542.1\|4219356_4219824_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	5.4e-47	59.5
AXZ28543.1\|4219820_4220456_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	6.6e-56	50.5
AXZ28544.1\|4220452_4221040_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.2e-61	61.0
AXZ28545.1\|4221036_4221387_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	2.1e-27	54.8
AXZ28546.1\|4221388_4222312_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	9.9e-53	43.6
AXZ28547.1\|4222301_4225328_+\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
AXZ28548.1\|4225324_4225537_+	hypothetical protein	NA	NA	NA	NA
AXZ28549.1\|4225536_4226634_+\|tail	phage tail protein	G4KKN6	Yersinia_phage	8.8e-08	46.7
AXZ28550.1\|4226864_4228595_-	deoxycytidylate deaminase	NA	NA	NA	NA
AXZ28551.1\|4228842_4229280_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.8e-52	67.4
AXZ28552.1\|4229295_4232271_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	6.3e-218	46.7
AXZ29771.1\|4232257_4232416_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
AXZ28553.1\|4232415_4232733_-\|tail	phage tail assembly protein	B9A7B2	Serratia_phage	1.0e-17	54.8
AXZ28554.1\|4232778_4233294_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
AXZ28555.1\|4233293_4234466_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	2.9e-158	70.7
AXZ28556.1\|4234620_4235760_+	phage late control D family protein	B9A7A9	Serratia_phage	3.6e-145	70.5
AXZ29772.1\|4235803_4236055_+	hypothetical protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
AXZ28557.1\|4236319_4236559_+	DUF333 domain-containing protein	NA	NA	NA	NA
4236151:4236168	attR	NA	NA	NA	NA
AXZ28558.1\|4236548_4236905_-	DUF488 domain-containing protein	NA	NA	NA	NA
AXZ28559.1\|4236891_4237401_-	DUF523 domain-containing protein	NA	NA	NA	NA
AXZ28560.1\|4237546_4238239_+	hypothetical protein	NA	NA	NA	NA
AXZ28561.1\|4238270_4239455_-	cyanate MFS transporter	NA	NA	NA	NA
AXZ29773.1\|4239556_4240348_+	AraC family transcriptional regulator	NA	NA	NA	NA
AXZ28562.1\|4240331_4240778_-	DUF441 domain-containing protein	NA	NA	NA	NA
AXZ28563.1\|4240894_4241395_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_5

4351822 : 4410066

Enterobacteria_phage(21.82%)

transposase,holin,terminase,tail,integrase

attL 4342661:4342676|attR 4377505:4377520

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4342661:4342676	attL	NA	NA	NA	NA
AXZ28670.1\|4351822_4352632_-	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
AXZ28671.1\|4352633_4353626_-	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
AXZ28672.1\|4353625_4354516_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
AXZ28673.1\|4354692_4355880_+\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.2e-120	52.2
AXZ28674.1\|4355776_4356091_-	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
AXZ28675.1\|4356100_4356340_-	DUF4060 family protein	M9P0E0	Enterobacteria_phage	6.8e-22	67.5
AXZ28676.1\|4356380_4357490_-	enterohemolysin	H6WRX0	Salmonella_phage	1.0e-184	86.7
AXZ28677.1\|4357502_4360547_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.0e-292	57.4
AXZ28678.1\|4360684_4360840_-	hypothetical protein	K7PGY4	Enterobacteria_phage	1.5e-14	71.2
AXZ28679.1\|4360848_4361040_-	DUF1482 family protein	NA	NA	NA	NA
AXZ28680.1\|4361146_4361245_-	hypothetical protein	NA	NA	NA	NA
AXZ28681.1\|4361336_4361645_-	hypothetical protein	G8C7T6	Escherichia_phage	1.7e-25	62.2
AXZ28682.1\|4361871_4362228_-	hypothetical protein	NA	NA	NA	NA
AXZ28683.1\|4362324_4362588_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXZ28684.1\|4362590_4363127_+	hypothetical protein	M9NZI6	Enterobacteria_phage	3.1e-59	68.3
AXZ28685.1\|4363474_4364395_+	hypothetical protein	K7PGZ0	Enterobacteria_phage	1.7e-92	61.3
AXZ28686.1\|4364391_4365135_+	Replication protein P	A0A0M3ULE2	Salmonella_phage	6.9e-65	54.8
AXZ28687.1\|4365127_4365463_+	DUF977 family protein	H6WRX9	Salmonella_phage	4.4e-11	43.0
AXZ28688.1\|4365455_4366241_+	hypothetical protein	A4JX52	Burkholderia_virus	1.7e-66	53.3
AXZ28689.1\|4366368_4366776_+	hypothetical protein	R9TME7	Aeromonas_phage	6.6e-09	35.3
AXZ28690.1\|4366772_4367255_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	2.9e-72	83.4
AXZ28691.1\|4368101_4368359_+	hypothetical protein	NA	NA	NA	NA
AXZ28692.1\|4368474_4369470_-	SppA protein	NA	NA	NA	NA
AXZ28693.1\|4369817_4370177_+	XRE family transcriptional regulator	L7TKV7	Pseudomonas_virus	9.2e-23	50.9
AXZ28694.1\|4370179_4370656_+	ImmA/IrrE family metallo-endopeptidase	L7THB5	Pseudomonas_virus	2.6e-17	30.7
AXZ28695.1\|4371261_4371495_+	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	2.9e-25	68.8
AXZ28696.1\|4371572_4371794_+	hypothetical protein	NA	NA	NA	NA
AXZ28697.1\|4371851_4372451_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.3e-90	79.9
AXZ28698.1\|4372450_4372657_+	hypothetical protein	H6WRY8	Salmonella_phage	5.3e-23	71.2
AXZ28699.1\|4372659_4372956_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	2.1e-36	71.9
AXZ28700.1\|4372952_4373309_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.5e-41	64.1
AXZ28701.1\|4373424_4374246_+	antitermination protein	K7PKS8	Enterobacteria_phage	4.0e-98	67.1
AXZ28702.1\|4374605_4374830_+	hypothetical protein	NA	NA	NA	NA
AXZ29776.1\|4374937_4375339_+	hypothetical protein	G8C7V8	Escherichia_phage	4.3e-37	71.7
AXZ28703.1\|4375324_4376089_-	hypothetical protein	U5N3V8	Enterobacteria_phage	5.3e-36	36.0
AXZ28704.1\|4376085_4377585_-\|transposase	IS21 family transposase	NA	NA	NA	NA
4377505:4377520	attR	NA	NA	NA	NA
AXZ28705.1\|4377734_4378016_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-32	73.1
AXZ28706.1\|4378015_4378645_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	1.3e-85	74.4
AXZ28707.1\|4378647_4378923_+	hypothetical protein	G8C7W1	Escherichia_phage	4.3e-12	44.9
AXZ28708.1\|4378873_4379050_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	2.2e-22	87.7
AXZ28709.1\|4379106_4379307_+	hypothetical protein	A0A1L6Z528	Klebsiella_phage	5.9e-19	73.3
AXZ28710.1\|4379752_4379941_+	hypothetical protein	NA	NA	NA	NA
AXZ28711.1\|4380047_4380269_+	DNA gyrase subunit B	NA	NA	NA	NA
AXZ28712.1\|4380553_4380799_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	6.7e-33	95.1
AXZ28713.1\|4381147_4382152_+\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.3e-37	45.0
AXZ28714.1\|4382129_4383437_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
AXZ28715.1\|4383436_4384837_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	4.9e-128	53.7
AXZ28716.1\|4384820_4385933_+	hypothetical protein	I6PD76	Cronobacter_phage	2.1e-110	54.8
AXZ28717.1\|4386463_4387249_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	4.6e-67	63.6
AXZ28718.1\|4387259_4388213_+	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	1.1e-131	74.0
AXZ28719.1\|4388534_4388930_+	protein singed	A0A0S2SYB7	Pseudomonas_phage	2.5e-13	44.2
AXZ28720.1\|4388931_4389186_+	hypothetical protein	J9Q7U0	Salmonella_phage	8.0e-21	52.4
AXZ28721.1\|4389195_4389429_+	hypothetical protein	A0A1V0E8A3	Vibrio_phage	1.7e-09	47.7
AXZ28722.1\|4389415_4389799_+	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
AXZ28723.1\|4389800_4390352_+	hypothetical protein	G8C7Q1	Escherichia_phage	1.7e-28	40.4
AXZ28724.1\|4390348_4390741_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AXZ28725.1\|4390764_4391937_+	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
AXZ28726.1\|4391990_4392473_+	hypothetical protein	NA	NA	NA	NA
AXZ28727.1\|4392640_4392808_+	hypothetical protein	NA	NA	NA	NA
AXZ28728.1\|4393019_4393397_+	hypothetical protein	NA	NA	NA	NA
AXZ28729.1\|4393460_4396397_+\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	5.7e-102	37.7
AXZ28730.1\|4396480_4396816_+	hypothetical protein	NA	NA	NA	NA
AXZ28731.1\|4397127_4397592_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.3e-53	59.9
AXZ28732.1\|4397588_4398071_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	7.2e-79	90.6
AXZ28733.1\|4398081_4398462_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.7e-67	92.9
AXZ28734.1\|4398458_4401527_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	94.3
AXZ28735.1\|4401732_4405110_+	hypothetical protein	A0A2H5BNP5	Klebsiella_phage	0.0e+00	58.8
AXZ28736.1\|4405109_4405454_+	hypothetical protein	A0A2H5BNP5	Klebsiella_phage	5.3e-28	55.5
AXZ28737.1\|4405570_4406464_-	hypothetical protein	NA	NA	NA	NA
AXZ28738.1\|4407184_4407607_+	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	44.5
AXZ28739.1\|4408156_4408576_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
AXZ28740.1\|4408577_4409843_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.5e-208	82.9
AXZ28741.1\|4409835_4410066_-	hypothetical protein	A0A2H4J5W2	uncultured_Caudovirales_phage	7.0e-16	49.3

DBSCAN-SWA_6

4676962 : 4687850

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ28985.1\|4676962_4677583_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
AXZ28986.1\|4677575_4678841_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
AXZ28987.1\|4678852_4679755_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.8e-158	99.3
AXZ28988.1\|4679792_4680026_-	hypothetical protein	NA	NA	NA	NA
AXZ28989.1\|4680016_4680778_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AXZ28990.1\|4680798_4681659_-	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
AXZ28991.1\|4681956_4682217_+	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AXZ28992.1\|4682303_4683392_+	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	1.8e-210	99.7
AXZ28993.1\|4683422_4684688_-	MFS transporter	NA	NA	NA	NA
AXZ28994.1\|4684742_4687850_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032173

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2957 : 76232

Escherichia_phage(16.67%)

protease,transposase,integrase

attL 52514:52542|attR 76847:76875

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ24555.1\|2957_3662_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	6.9e-139	99.6
AXZ24556.1\|3805_3994_-	hypothetical protein	NA	NA	NA	NA
AXZ24557.1\|4986_5802_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXZ24558.1\|5826_7335_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.6e-34	39.2
AXZ24559.1\|7344_8067_+	GntR family transcriptional regulator	NA	NA	NA	NA
AXZ24560.1\|8066_8903_+	DUF1989 domain-containing protein	NA	NA	NA	NA
AXZ24561.1\|8943_10398_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
AXZ24562.1\|11186_11837_-	GntR family transcriptional regulator	NA	NA	NA	NA
AXZ24563.1\|12176_13421_+	divalent metal cation transporter	NA	NA	NA	NA
AXZ24564.1\|13429_14203_+	LamB/YcsF family protein	NA	NA	NA	NA
AXZ24565.1\|14199_15006_+	putative hydro-lyase	NA	NA	NA	NA
AXZ24566.1\|15018_16602_+	allophanate hydrolase	NA	NA	NA	NA
AXZ24567.1\|16601_18347_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
AXZ24568.1\|19814_20279_-	hypothetical protein	NA	NA	NA	NA
AXZ24569.1\|22681_23182_+	hypothetical protein	NA	NA	NA	NA
AXZ24570.1\|23224_24580_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
AXZ24571.1\|24595_24880_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	6.4e-19	55.9
AXZ24572.1\|24869_25118_-	plasmid stabilization protein	NA	NA	NA	NA
AXZ24666.1\|26865_27147_+	DNA-binding protein	A0A1B1IUF9	uncultured_Mediterranean_phage	6.8e-05	38.2
AXZ24573.1\|27181_27751_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
AXZ24574.1\|27856_30652_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
AXZ24575.1\|30651_30849_+	hypothetical protein	NA	NA	NA	NA
AXZ24576.1\|31086_31836_+	diguanylate cyclase	NA	NA	NA	NA
AXZ24577.1\|31822_32785_+\|protease	Zn-dependent protease	NA	NA	NA	NA
AXZ24667.1\|34180_34267_-	ABC transporter	NA	NA	NA	NA
AXZ24578.1\|34413_36999_+	EAL domain-containing protein	G3MA91	Bacillus_virus	3.5e-23	36.2
AXZ24579.1\|37157_37862_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXZ24580.1\|38012_38279_+	DUF1778 domain-containing protein	NA	NA	NA	NA
AXZ24581.1\|38266_38749_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXZ24668.1\|38956_40303_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
AXZ24582.1\|40361_41156_+	tetratricopeptide repeat protein	NA	NA	NA	NA
AXZ24583.1\|41194_42904_-	hypothetical protein	NA	NA	NA	NA
AXZ24584.1\|43268_45080_-	hypothetical protein	NA	NA	NA	NA
AXZ24585.1\|45076_46963_-	AAA family ATPase	NA	NA	NA	NA
AXZ24586.1\|47118_47595_-	hypothetical protein	NA	NA	NA	NA
AXZ24587.1\|47783_48773_+\|integrase	integrase	A0A0K0N6I5	Gordonia_phage	2.7e-08	28.0
AXZ24669.1\|49512_49833_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.0e-20	53.7
AXZ24588.1\|49877_51167_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	7.6e-168	70.9
AXZ24589.1\|51562_52486_+\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	1.0e-174	98.7
52514:52542	attL	NA	NA	NA	NA
AXZ24590.1\|53573_55073_+\|transposase	IS21 family transposase	NA	NA	NA	NA
AXZ24591.1\|55069_55834_+	hypothetical protein	A0A059NT77	Lactococcus_phage	9.7e-30	35.4
AXZ24592.1\|55884_56931_-	FUSC family protein	NA	NA	NA	NA
AXZ24593.1\|57196_57706_+	DUF2778 domain-containing protein	NA	NA	NA	NA
AXZ24594.1\|59448_59721_+	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
AXZ24595.1\|59720_61109_+	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	6.3e-51	29.0
AXZ24596.1\|61101_62214_+	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.5e-47	33.8
AXZ24597.1\|62210_62846_+	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
AXZ24670.1\|63402_63780_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.6e-57	91.3
AXZ24598.1\|63776_64124_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	4.1e-60	96.5
AXZ24599.1\|67947_69681_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	29.6
AXZ24600.1\|69688_70636_-	acetamidase	A0A1V0S8X7	Catovirus	9.6e-11	22.7
AXZ24601.1\|70680_72285_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXZ24602.1\|72297_73218_-	ABC transporter permease	NA	NA	NA	NA
AXZ24603.1\|73217_74066_-	ABC transporter permease	NA	NA	NA	NA
AXZ24604.1\|74062_74656_-	ANTAR domain-containing protein	NA	NA	NA	NA
AXZ24605.1\|74652_75780_-	regulator	NA	NA	NA	NA
AXZ24606.1\|76064_76232_-\|integrase	integrase	NA	NA	NA	NA
76847:76875	attR	NA	NA	NA	NA

DBSCAN-SWA_2

86140 : 148728

Bacillus_phage(18.18%)

integrase,transposase,holin

attL 85690:85705|attR 118500:118515

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
85690:85705	attL	NA	NA	NA	NA
AXZ24615.1\|86140_87145_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXZ24616.1\|87548_88541_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
AXZ24617.1\|88910_89993_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	6.5e-189	98.1
AXZ24618.1\|90114_93189_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
AXZ24619.1\|93240_94494_+	MFS transporter	NA	NA	NA	NA
AXZ24620.1\|94609_95533_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.2e-172	97.7
AXZ24621.1\|97279_98020_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
AXZ24622.1\|98716_99727_-	replication initiation protein	J9Q7H0	Salmonella_phage	3.0e-87	54.3
AXZ24623.1\|100467_101634_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	3.0e-224	97.7
AXZ24624.1\|101633_102605_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	1.4e-150	86.9
AXZ24672.1\|102818_103211_+	hypothetical protein	NA	NA	NA	NA
AXZ24625.1\|103681_103987_-	hypothetical protein	NA	NA	NA	NA
AXZ24626.1\|104040_104292_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
AXZ24627.1\|104370_105642_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.6e-154	63.5
AXZ24628.1\|105641_105845_-	umuDC operon-like protein	A0A1W6JNS2	Morganella_phage	1.5e-09	57.9
AXZ24629.1\|105903_106608_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXZ24673.1\|106736_107585_+	DNA helicase UvrD	NA	NA	NA	NA
AXZ24674.1\|108128_109037_+	HNH endonuclease	NA	NA	NA	NA
AXZ24630.1\|109222_109573_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	6.0e-19	51.4
AXZ24631.1\|109720_110152_-	silver-binding protein SilE	NA	NA	NA	NA
AXZ24632.1\|110402_111878_-	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.0e-27	30.1
AXZ24633.1\|111870_112551_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-31	36.0
AXZ24634.1\|112740_114126_+	Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA	NA	NA	NA
AXZ24635.1\|114154_114508_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
AXZ24636.1\|114621_115914_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXZ24637.1\|115924_119071_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	4.0e-61	22.5
118500:118515	attR	NA	NA	NA	NA
AXZ24638.1\|119157_119598_+	hypothetical protein	NA	NA	NA	NA
AXZ24639.1\|119724_122172_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	4.4e-84	35.8
AXZ24640.1\|122212_122410_+	DUF2933 domain-containing protein	NA	NA	NA	NA
AXZ24641.1\|122443_123181_-	peptidase	A0A2H4JAF5	uncultured_Caudovirales_phage	1.3e-10	31.9
AXZ24642.1\|123469_123919_-	copper resistance protein	NA	NA	NA	NA
AXZ24643.1\|124152_125970_+	multicopper oxidase PcoA	NA	NA	NA	NA
AXZ24644.1\|125969_126866_+	copper resistance protein B	NA	NA	NA	NA
AXZ24645.1\|126905_127286_+	copper resistance system chaperone PcoC	NA	NA	NA	NA
AXZ24646.1\|127290_128220_+	copper resistance protein D	NA	NA	NA	NA
AXZ24647.1\|128274_128955_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
AXZ24648.1\|128951_130352_+	sensor histidine kinase	W8CYF6	Bacillus_phage	2.4e-18	26.6
AXZ24649.1\|130567_131002_+	copper-binding protein	NA	NA	NA	NA
AXZ24675.1\|133131_133746_-	hypothetical protein	NA	NA	NA	NA
AXZ24650.1\|134096_134522_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-50	70.7
AXZ24651.1\|134534_135824_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.1e-170	73.5
AXZ24652.1\|135871_137623_-	arsenical pump-driving ATPase	NA	NA	NA	NA
AXZ24653.1\|137640_138003_-	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
AXZ24654.1\|138050_138404_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	4.1e-23	50.0
AXZ24655.1\|140004_142008_+\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	4.1e-19	24.9
AXZ24656.1\|142070_143348_+	DUF2254 domain-containing protein	NA	NA	NA	NA
AXZ24657.1\|147228_148728_+\|transposase	IS21 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032175

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP032173

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection