CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP032194	Salmonella enterica subsp. enterica serovar Senftenberg strain AR_0127 chromosome, complete genome	0 crisprs	DinG,cas3,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	8
CP032192	Salmonella enterica subsp. enterica serovar Senftenberg strain AR_0127 plasmid unnamed1, complete sequence	0 crisprs	DEDDh	1
CP032193	Salmonella enterica subsp. enterica serovar Senftenberg strain AR_0127 plasmid unnamed2, complete sequence	0 crisprs	DEDDh	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

103958 : 202316

104

Salmonella_phage(76.92%)

lysis,terminase,capsid,tail,tRNA,protease,head,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ35507.1\|103958_104762_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
AXZ35508.1\|104754_106077_+	chromosome partition protein MukF	NA	NA	NA	NA
AXZ35509.1\|106057_106762_+	chromosome partition protein MukE	NA	NA	NA	NA
AXZ35510.1\|106761_111228_+	chromosome partition protein MukB	NA	NA	NA	NA
AXZ35511.1\|111572_113420_+	L,D-transpeptidase	NA	NA	NA	NA
AXZ35512.1\|113679_114228_+	DUF882 domain-containing protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
AXZ35513.1\|114255_114903_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AXZ35514.1\|114964_116155_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
AXZ35515.1\|116339_117431_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
AXZ35516.1\|118037_119438_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	4.5e-81	35.8
AXZ35517.1\|119638_120100_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AXZ35518.1\|120416_121631_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
AXZ35519.1\|121876_123313_+	sodium:alanine symporter family protein	NA	NA	NA	NA
AXZ35520.1\|123390_124593_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AXZ35521.1\|124787_126080_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	3.4e-253	100.0
AXZ35522.1\|126124_126373_-	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AXZ35523.1\|126413_126653_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AXZ35524.1\|126695_127853_-	enterohemolysin	S4TTE8	Salmonella_phage	1.0e-216	99.5
AXZ35525.1\|127815_130743_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	98.6
AXZ35526.1\|130869_131220_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	2.0e-59	94.8
AXZ35527.1\|131241_131400_-	hypothetical protein	H6WRX3	Salmonella_phage	2.4e-23	100.0
AXZ35528.1\|131796_132201_-	transcriptional regulator	H6WRX4	Salmonella_phage	4.2e-72	100.0
AXZ35529.1\|132330_132567_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.8e-38	100.0
AXZ35530.1\|132532_132907_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AXZ35531.1\|132998_133904_+	Replication protein O	A0A0M5M7Y1	Salmonella_phage	9.1e-176	99.7
AXZ35532.1\|133900_134602_+	Replication protein P	A0A0M3ULE2	Salmonella_phage	8.4e-129	99.6
AXZ39995.1\|134646_135048_+	chromosome partitioning protein ParB	S4TTI6	Salmonella_phage	6.4e-73	99.2
AXZ35533.1\|135044_135827_+	hypothetical protein	A0A1V0E5L5	Salmonella_phage	8.6e-66	92.8
AXZ35534.1\|135826_136300_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	4.3e-68	80.1
AXZ39996.1\|136657_137215_+	DUF551 domain-containing protein	K7P7E4	Enterobacteria_phage	1.1e-38	50.5
AXZ35535.1\|137313_137580_+	hypothetical protein	S4TNF2	Salmonella_phage	1.5e-46	100.0
AXZ35536.1\|137734_137974_+	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
AXZ35537.1\|137963_138269_+	hypothetical protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
AXZ35538.1\|138308_138911_+	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	7.5e-110	99.0
AXZ35539.1\|138910_139117_+	hypothetical protein	S4TNP0	Salmonella_phage	3.9e-34	98.5
AXZ35540.1\|139119_139761_+	hypothetical protein	S4TSR3	Salmonella_phage	3.3e-116	100.0
AXZ35541.1\|139757_139904_+	YlcG family protein	H6WRZ0	Salmonella_phage	1.5e-19	100.0
AXZ35542.1\|139893_140691_+	antitermination protein	H6WRZ1	Salmonella_phage	5.2e-151	100.0
AXZ35543.1\|141084_141399_+	hypothetical protein	H6WRZ3	Salmonella_phage	2.4e-51	100.0
AXZ35544.1\|141401_141944_+	lysozyme	H6WRZ4	Salmonella_phage	1.6e-103	100.0
AXZ35545.1\|142341_142809_+\|lysis	lysis protein	H6WRZ5	Salmonella_phage	1.5e-78	99.4
AXZ35546.1\|142859_143171_+	KilA-N domain-containing protein	S4TSR0	Salmonella_phage	1.4e-48	93.1
AXZ35547.1\|143192_143516_+	DNA-binding protein	A0A1V0E5R9	Salmonella_phage	3.6e-58	99.1
AXZ35548.1\|143512_143770_+	hypothetical protein	A0A1V0E5Q1	Salmonella_phage	3.8e-39	100.0
AXZ35549.1\|143914_144460_-	hypothetical protein	S4TR57	Salmonella_phage	5.0e-97	100.0
AXZ35550.1\|144536_144872_+	hypothetical protein	S4TTH3	Salmonella_phage	3.7e-42	73.9
AXZ35551.1\|144992_145721_+	Fur-regulated protein	M9NZE9	Enterobacteria_phage	1.4e-97	77.7
AXZ35552.1\|145735_147193_+	glycosyltransferase family 2 protein	S4TSQ9	Salmonella_phage	7.8e-286	97.5
AXZ35553.1\|147393_147756_+	HNH endonuclease	K7PJS8	Enterobacterial_phage	1.3e-32	61.6
AXZ35554.1\|147736_148330_+	hypothetical protein	S4TR53	Salmonella_phage	5.3e-116	100.0
AXZ35555.1\|148322_148691_+	HNH endonuclease	S4TTG9	Salmonella_phage	3.1e-66	100.0
AXZ35556.1\|148798_149293_+\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	1.7e-83	100.0
AXZ35557.1\|149289_150951_+\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	0.0e+00	99.8
AXZ35558.1\|151009_152944_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	100.0
AXZ35559.1\|153148_154504_+\|portal	phage portal protein	S4TTG7	Salmonella_phage	2.8e-261	100.0
AXZ35560.1\|154500_155544_+\|head,tail	phage gp6-like head-tail connector protein	S4TNN1	Salmonella_phage	2.0e-134	100.0
AXZ35561.1\|155540_155867_+\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	2.2e-55	100.0
AXZ35562.1\|155875_156226_+\|head,tail	head-tail adaptor protein	S4TND9	Salmonella_phage	1.7e-58	100.0
AXZ35563.1\|156222_156672_+	hypothetical protein	S4TR46	Salmonella_phage	1.5e-75	100.0
AXZ35564.1\|156668_157016_+	DUF3168 domain-containing protein	S4TTG3	Salmonella_phage	1.7e-58	100.0
AXZ35565.1\|157071_157515_+	hypothetical protein	S4TNM8	Salmonella_phage	7.5e-75	95.9
AXZ35566.1\|157523_157907_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
AXZ35567.1\|157915_158194_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	5.3e-42	95.6
AXZ35568.1\|158214_158634_-	hypothetical protein	NA	NA	NA	NA
AXZ35569.1\|158718_162204_+\|tail	phage tail tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	0.0e+00	72.1
AXZ35570.1\|162249_162609_+	hypothetical protein	NA	NA	NA	NA
AXZ35571.1\|162597_162822_-	hypothetical protein	NA	NA	NA	NA
AXZ35572.1\|162987_163581_+	hypothetical protein	S4TSP7	Salmonella_phage	3.1e-108	95.9
AXZ35573.1\|163580_164165_+	hypothetical protein	S4TND4	Salmonella_phage	1.6e-104	96.9
AXZ35574.1\|164171_164570_+	hypothetical protein	S4TR39	Salmonella_phage	2.9e-70	93.2
AXZ35575.1\|164569_167281_+	DUF1983 domain-containing protein	S4TTF5	Salmonella_phage	0.0e+00	94.4
AXZ35576.1\|167289_168249_+	hypothetical protein	H6WRW5	Salmonella_phage	2.8e-183	99.7
AXZ35577.1\|168259_169390_+\|tail	tail fiber domain-containing protein	S4TSP4	Salmonella_phage	2.7e-201	98.9
AXZ35578.1\|169596_169803_-	DinI family protein	S4TNM0	Salmonella_phage	1.8e-31	100.0
AXZ35579.1\|170229_172842_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	3.7e-20	22.8
AXZ35580.1\|173049_174060_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AXZ35581.1\|174225_174768_+	cell division protein ZapC	NA	NA	NA	NA
AXZ35582.1\|174764_175874_-	MOSC domain-containing protein	NA	NA	NA	NA
AXZ35583.1\|175972_178081_+	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AXZ35584.1\|178093_180001_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	5.4e-53	29.8
AXZ35585.1\|180015_181269_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
AXZ35586.1\|181273_182914_+	intermembrane transport protein PqiB	NA	NA	NA	NA
AXZ35587.1\|182910_183474_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
AXZ35588.1\|183729_183897_+	ribosome modulation factor	NA	NA	NA	NA
AXZ35589.1\|183996_184515_-	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AXZ35590.1\|184583_186344_-\|protease	Lon protease family protein	NA	NA	NA	NA
AXZ35591.1\|186529_186982_+	macrodomain Ter protein	NA	NA	NA	NA
AXZ39997.1\|187053_188106_-	porin OmpA	NA	NA	NA	NA
AXZ35592.1\|188462_188972_-	cell division inhibitor SulA	NA	NA	NA	NA
AXZ35593.1\|189188_189794_+	DNA transformation protein	NA	NA	NA	NA
AXZ35594.1\|189780_191934_-	TIGR01666 family membrane protein	NA	NA	NA	NA
AXZ35595.1\|191952_192399_-	YccF domain-containing protein	NA	NA	NA	NA
AXZ35596.1\|192522_194577_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
AXZ35597.1\|194612_195071_-	methylglyoxal synthase	NA	NA	NA	NA
AXZ35598.1\|195165_195828_-	DUF2057 family protein	NA	NA	NA	NA
AXZ35599.1\|195998_196415_+	CoA-binding protein	NA	NA	NA	NA
AXZ35600.1\|196459_196777_-	heat-shock protein HspQ	NA	NA	NA	NA
AXZ35601.1\|196834_198046_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
AXZ35602.1\|198260_198809_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AXZ35603.1\|198834_199614_+	AraC family transcriptional regulator	NA	NA	NA	NA
AXZ35604.1\|199662_199944_+	acylphosphatase	NA	NA	NA	NA
AXZ35605.1\|199940_200270_-	sulfurtransferase TusE	NA	NA	NA	NA
AXZ35606.1\|200356_201016_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
AXZ35607.1\|201635_202316_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	1.7e-81	71.0

DBSCAN-SWA_2

1254830 : 1261127

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ36661.1\|1254830_1255361_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.4e-51	56.5
AXZ36662.1\|1255365_1256244_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.0e-107	64.1
AXZ36663.1\|1256291_1257191_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
AXZ36664.1\|1257190_1258276_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AXZ36665.1\|1258652_1259546_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXZ36666.1\|1259723_1261127_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.3e-21	26.5

DBSCAN-SWA_3

1342077 : 1351248

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ36733.1\|1342077_1344111_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
AXZ36734.1\|1344351_1344810_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AXZ36735.1\|1344981_1345512_+	DUF1307 domain-containing protein	NA	NA	NA	NA
AXZ36736.1\|1345568_1346036_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AXZ36737.1\|1346082_1346802_-	DNA-binding response regulator	NA	NA	NA	NA
AXZ36738.1\|1346798_1348484_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AXZ36739.1\|1348706_1349438_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXZ36740.1\|1349497_1349605_+	hypothetical protein	NA	NA	NA	NA
AXZ36741.1\|1349585_1350317_-	ABC transporter permease	NA	NA	NA	NA
AXZ36742.1\|1350300_1351248_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_4

1567385 : 1635993

Salmonella_phage(52.46%)

lysis,terminase,capsid,tail,tRNA,protease,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ36940.1\|1567385_1568198_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
AXZ36941.1\|1568197_1569211_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AXZ36942.1\|1569278_1570415_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	5.0e-22	29.1
AXZ36943.1\|1570518_1571520_+	flagella biosynthesis regulator	NA	NA	NA	NA
AXZ36944.1\|1571516_1572695_-	MFS transporter	NA	NA	NA	NA
AXZ36945.1\|1572874_1573249_-	hypothetical protein	NA	NA	NA	NA
AXZ36946.1\|1573421_1573604_+	DNA-binding protein	NA	NA	NA	NA
AXZ36947.1\|1573597_1573816_+	hypothetical protein	NA	NA	NA	NA
AXZ36948.1\|1573815_1574334_+	DUF3828 domain-containing protein	NA	NA	NA	NA
AXZ36949.1\|1574400_1575057_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXZ36950.1\|1575154_1576369_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
AXZ36951.1\|1576468_1578529_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
AXZ36952.1\|1578580_1578856_-	YfcL family protein	NA	NA	NA	NA
AXZ36953.1\|1578888_1579437_-	elongation factor P hydroxylase	NA	NA	NA	NA
AXZ36954.1\|1579436_1580246_-	hypothetical protein	NA	NA	NA	NA
AXZ36955.1\|1580245_1581070_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
AXZ36956.1\|1581073_1582159_-	chorismate synthase	A0A291AU41	Pandoravirus	9.1e-90	47.8
AXZ36957.1\|1582194_1583127_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
AXZ36958.1\|1583292_1583844_+	endonuclease SmrB	NA	NA	NA	NA
AXZ36959.1\|1583943_1584429_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
AXZ36960.1\|1584637_1586785_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
AXZ36961.1\|1586784_1588095_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
AXZ36962.1\|1588272_1588557_-	DUF406 family protein	NA	NA	NA	NA
AXZ36963.1\|1588927_1590235_+	long-chain fatty acid transporter	NA	NA	NA	NA
AXZ36964.1\|1590295_1591051_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AXZ36965.1\|1591339_1592281_+	hypothetical protein	E7DYY8	Enterobacteria_phage	1.4e-147	88.2
AXZ36966.1\|1592595_1593765_+	DUF4102 domain-containing protein	C6ZR22	Salmonella_phage	2.3e-211	90.0
AXZ36967.1\|1593792_1593906_+	virulence protein	S4TND2	Salmonella_phage	2.1e-10	83.8
AXZ36968.1\|1595252_1596212_-	hypothetical protein	H6WRW5	Salmonella_phage	2.8e-183	99.7
AXZ36969.1\|1596220_1598932_-	DUF1983 domain-containing protein	S4TTF5	Salmonella_phage	0.0e+00	94.4
AXZ36970.1\|1598931_1599330_-	hypothetical protein	S4TR39	Salmonella_phage	2.9e-70	93.2
AXZ36971.1\|1599919_1600513_-	hypothetical protein	S4TSP7	Salmonella_phage	3.1e-108	95.9
AXZ36972.1\|1600678_1600903_+	hypothetical protein	NA	NA	NA	NA
AXZ36973.1\|1600891_1601251_-	hypothetical protein	NA	NA	NA	NA
AXZ36974.1\|1601296_1604611_-\|tail	phage tail tape measure protein	S4TTF9	Salmonella_phage	0.0e+00	95.4
AXZ36975.1\|1604657_1604993_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	7.0e-57	100.0
AXZ40058.1\|1605049_1605328_-	DUF4035 domain-containing protein	S4TND7	Salmonella_phage	1.9e-44	100.0
AXZ36976.1\|1605351_1605723_-\|tail	phage tail protein	S4TSQ0	Salmonella_phage	3.0e-61	94.2
AXZ36977.1\|1605750_1606455_-\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	4.4e-93	74.4
AXZ36978.1\|1606511_1606859_-	DUF3168 domain-containing protein	S4TTG3	Salmonella_phage	3.2e-57	97.4
AXZ36979.1\|1606855_1607305_-	hypothetical protein	S4TR46	Salmonella_phage	2.5e-73	96.6
AXZ36980.1\|1607301_1607640_-\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	70.5
AXZ36981.1\|1607649_1607976_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	5.2e-49	85.2
AXZ36982.1\|1607975_1608173_-	hypothetical protein	K7PHI6	Enterobacteria_phage	2.2e-10	66.0
AXZ36983.1\|1608216_1609434_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	1.0e-198	88.6
AXZ36984.1\|1609443_1610292_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.3e-131	87.9
AXZ36985.1\|1610305_1611613_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	3.8e-215	85.7
AXZ36986.1\|1611612_1613355_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	1.6e-141	46.2
AXZ36987.1\|1613308_1613773_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.3e-48	62.1
AXZ36988.1\|1613905_1614250_-	HNH endonuclease	K7P7P6	Enterobacteria_phage	1.0e-47	75.7
AXZ36989.1\|1614368_1614836_-\|lysis	lysis protein	I6RSQ8	Salmonella_phage	2.5e-73	96.8
AXZ36990.1\|1614924_1615422_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.9e-87	93.3
AXZ36991.1\|1615421_1615694_-	hypothetical protein	A0A1V0E5R8	Salmonella_phage	1.1e-41	100.0
AXZ36992.1\|1616085_1616850_-	antitermination protein	A0A0M4RTW7	Salmonella_phage	8.0e-141	97.6
AXZ36993.1\|1616846_1617026_-	hypothetical protein	A0A1V0E5I7	Salmonella_phage	7.1e-24	100.0
AXZ36994.1\|1617006_1617210_-	protein ninH	I6RSQ6	Salmonella_phage	7.2e-33	100.0
AXZ36995.1\|1617206_1617431_-	protein ninY	Q76H69	Enterobacteria_phage	4.1e-37	98.6
AXZ36996.1\|1617427_1618033_-	recombination protein NinG	G9L693	Escherichia_phage	8.1e-96	97.0
AXZ36997.1\|1618025_1618202_-	protein ninF	Q76H71	Enterobacteria_phage	1.5e-26	96.6
AXZ36998.1\|1618194_1618536_-	DUF2591 domain-containing protein	Q76H72	Enterobacteria_phage	2.1e-64	100.0
AXZ36999.1\|1618538_1618715_-	NinE family protein	A0A220NRK6	Escherichia_phage	1.9e-26	96.6
AXZ37000.1\|1618711_1619158_-	recombination protein NinB	I6R0N7	Salmonella_phage	7.8e-80	98.6
AXZ37001.1\|1619114_1619411_-	hypothetical protein	E7C9R7	Salmonella_phage	2.0e-47	98.0
AXZ37002.1\|1619675_1619939_-	hypothetical protein	I6R992	Salmonella_phage	2.5e-25	67.8
AXZ40059.1\|1619950_1620145_-	hypothetical protein	NA	NA	NA	NA
AXZ37003.1\|1620159_1620366_-	hypothetical protein	A0A192Y802	Salmonella_phage	1.2e-30	97.1
AXZ37004.1\|1620438_1621815_-	replicative DNA helicase	A0A192Y673	Salmonella_phage	4.3e-254	99.8
AXZ40060.1\|1621811_1622699_-	replication protein	G9L680	Escherichia_phage	9.9e-143	98.0
AXZ37005.1\|1622761_1623034_-	hypothetical protein	G9L679	Escherichia_phage	3.9e-42	96.7
AXZ37006.1\|1623056_1623347_-	hypothetical protein	I6RSP4	Salmonella_phage	4.5e-44	97.9
AXZ37007.1\|1623455_1623683_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	8.7e-27	80.0
AXZ37008.1\|1623792_1624479_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	1.9e-93	76.7
AXZ37009.1\|1624529_1625552_+	hypothetical protein	A4KWR9	Enterobacteria_phage	6.2e-72	40.9
AXZ37010.1\|1625695_1625899_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	2.0e-27	98.5
AXZ37011.1\|1626479_1626782_+	regulator	B8K1E6	Salmonella_phage	3.5e-47	93.0
AXZ37012.1\|1626784_1627381_+	hypothetical protein	V5URU3	Shigella_phage	6.2e-48	50.0
AXZ37013.1\|1627457_1628576_+	hypothetical protein	Q5G8T6	Enterobacteria_phage	9.5e-66	71.2
AXZ37014.1\|1628726_1628981_+	hypothetical protein	NA	NA	NA	NA
AXZ37015.1\|1629066_1629201_+	hypothetical protein	K7PHK2	Enterobacteria_phage	2.1e-09	78.0
AXZ37016.1\|1629185_1629380_+	hypothetical protein	M9NZE2	Enterobacteria_phage	4.7e-05	38.3
AXZ37017.1\|1629467_1629656_+	hypothetical protein	C6ZR38	Salmonella_phage	1.7e-23	82.3
AXZ37018.1\|1629663_1630371_+	recombinase	E7C9Q0	Salmonella_phage	7.9e-135	96.2
AXZ37019.1\|1630371_1630830_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	2.6e-70	89.0
AXZ37020.1\|1630838_1631318_+	hypothetical protein	Q716E9	Shigella_phage	9.3e-87	91.2
AXZ37021.1\|1631331_1631616_+	hypothetical protein	NA	NA	NA	NA
AXZ37022.1\|1631779_1632331_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	8.8e-57	59.4
AXZ37023.1\|1632621_1632843_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.6e-14	54.3
AXZ37024.1\|1632842_1633916_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	2.0e-142	67.6
AXZ37025.1\|1633878_1634121_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AXZ37026.1\|1634230_1634476_+	hypothetical protein	NA	NA	NA	NA
AXZ40061.1\|1634589_1634793_+	hypothetical protein	I6RSG8	Salmonella_phage	7.3e-17	56.7
AXZ37027.1\|1635054_1635993_-\|protease	omptin family outer membrane protease PgtE	NA	NA	NA	NA

DBSCAN-SWA_5

1867003 : 1960609

Salmonella_phage(72.0%)

lysis,capsid,tail,plate,tRNA,head,portal,integrase

attL 1929312:1929358|attR 1960727:1960773

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ37229.1\|1867003_1867741_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA
AXZ37230.1\|1867870_1869205_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
AXZ40068.1\|1869222_1870122_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXZ37231.1\|1870224_1870812_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
AXZ37232.1\|1870873_1871257_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
AXZ37233.1\|1871575_1872265_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
AXZ37234.1\|1872380_1873418_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AXZ37235.1\|1873621_1874041_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
AXZ37236.1\|1874113_1874794_+	DTW domain-containing protein	NA	NA	NA	NA
AXZ37237.1\|1874847_1877508_+	protein lysine acetyltransferase	NA	NA	NA	NA
AXZ37238.1\|1877622_1878978_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AXZ37239.1\|1879020_1879344_+	YfiM family lipoprotein	NA	NA	NA	NA
AXZ37240.1\|1879340_1880642_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.4
AXZ37241.1\|1880745_1881201_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
AXZ37242.1\|1881217_1881448_-	hypothetical protein	NA	NA	NA	NA
AXZ37243.1\|1887154_1889728_-	chaperone protein ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
AXZ37244.1\|1889857_1890589_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AXZ37245.1\|1890585_1891566_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
AXZ37246.1\|1891697_1892435_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AXZ37247.1\|1892706_1893045_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AXZ40069.1\|1893148_1893196_+	hypothetical protein	NA	NA	NA	NA
AXZ37248.1\|1893295_1894456_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AXZ37249.1\|1894416_1895325_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
AXZ37250.1\|1895382_1896504_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AXZ37251.1\|1896513_1897584_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
AXZ37252.1\|1898023_1898542_+	YfiR family protein	NA	NA	NA	NA
AXZ37253.1\|1898534_1899755_+	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
AXZ37254.1\|1899911_1900259_-	50S ribosomal protein L19	NA	NA	NA	NA
AXZ37255.1\|1900299_1901067_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AXZ37256.1\|1901111_1901660_-	ribosome maturation factor RimM	NA	NA	NA	NA
AXZ40070.1\|1901678_1901927_-	30S ribosomal protein S16	NA	NA	NA	NA
AXZ37257.1\|1902240_1903602_-	signal recognition particle protein	NA	NA	NA	NA
AXZ37258.1\|1903767_1904559_+	inner membrane protein YpjD	NA	NA	NA	NA
AXZ37259.1\|1904623_1905865_+	DUF21 domain-containing protein	NA	NA	NA	NA
AXZ37260.1\|1905985_1906591_+	cytoplasmic protein	NA	NA	NA	NA
AXZ40071.1\|1906625_1907216_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AXZ37261.1\|1907339_1908218_+	NAD(+) kinase	NA	NA	NA	NA
AXZ37262.1\|1908303_1909965_+	DNA repair protein RecN	NA	NA	NA	NA
AXZ37263.1\|1910113_1910452_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AXZ37264.1\|1910617_1910908_-	RnfH family protein	NA	NA	NA	NA
AXZ37265.1\|1910897_1911374_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AXZ40072.1\|1911523_1912006_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AXZ37266.1\|1924164_1925574_+	type I secretion protein TolC	NA	NA	NA	NA
AXZ37267.1\|1925570_1927751_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
AXZ40073.1\|1927758_1928922_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
1929312:1929358	attL	NA	NA	NA	NA
AXZ37268.1\|1929452_1929836_+	hypothetical protein	NA	NA	NA	NA
AXZ40074.1\|1929875_1930094_-	levansucrase regulator	E5G6Q4	Salmonella_phage	9.8e-28	75.0
AXZ37269.1\|1930161_1931262_-	phage late control D family protein	E5G6Q3	Salmonella_phage	3.7e-187	92.6
AXZ37270.1\|1931258_1931744_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.9e-72	93.8
AXZ37271.1\|1931740_1934518_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.9e-117	42.3
AXZ37272.1\|1934510_1934630_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
AXZ37273.1\|1934644_1934947_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
AXZ37274.1\|1935001_1935517_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.3e-91	98.8
AXZ37275.1\|1935526_1936699_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	5.0e-211	93.6
AXZ37276.1\|1936833_1937430_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	3.3e-49	49.5
AXZ37277.1\|1937429_1938689_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.7e-125	50.5
AXZ37278.1\|1938685_1939291_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.6e-112	95.0
AXZ37279.1\|1939283_1940192_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	2.1e-148	93.7
AXZ37280.1\|1940178_1940538_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.4e-55	92.4
AXZ37281.1\|1940534_1941113_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.8e-106	96.4
AXZ37282.1\|1941181_1941628_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	3.2e-65	89.0
AXZ37283.1\|1941620_1942052_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	3.1e-73	96.5
AXZ37284.1\|1942147_1942573_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	5.5e-67	97.2
AXZ37285.1\|1942572_1942950_-	peptidase	A0A1S6KZZ2	Salmonella_phage	9.9e-60	96.0
AXZ37286.1\|1942954_1943464_-	lysozyme	A0A1S6KZY9	Salmonella_phage	1.9e-93	97.6
AXZ37287.1\|1943444_1943660_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
AXZ37288.1\|1943663_1943867_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	4.2e-33	97.0
AXZ37289.1\|1943866_1944331_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	5.4e-84	97.4
AXZ37290.1\|1944424_1945075_-	hypothetical protein	A0A1S6KZX1	Salmonella_phage	1.4e-114	99.5
AXZ37291.1\|1945078_1946140_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.3e-194	98.9
AXZ37292.1\|1946156_1946990_-\|capsid	capsid protein	E5G6M5	Salmonella_phage	3.8e-128	97.5
AXZ37293.1\|1947132_1948899_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	94.9
AXZ37294.1\|1948898_1949942_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.6e-176	86.9
AXZ37295.1\|1949989_1950685_-	hypothetical protein	NA	NA	NA	NA
AXZ37296.1\|1950704_1951769_-	hypothetical protein	NA	NA	NA	NA
AXZ37297.1\|1951765_1952830_-	hypothetical protein	NA	NA	NA	NA
AXZ37298.1\|1952839_1953058_-	hypothetical protein	NA	NA	NA	NA
AXZ37299.1\|1953153_1953387_-	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
AXZ37300.1\|1953398_1953587_-	hypothetical protein	A0A1S6L006	Salmonella_phage	6.1e-26	98.4
AXZ37301.1\|1953748_1956157_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	97.0
AXZ37302.1\|1956147_1957008_-	DNA adenine methylase	E5G6L8	Salmonella_phage	6.2e-134	82.8
AXZ37303.1\|1957004_1957232_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.1e-34	92.0
AXZ37304.1\|1957231_1957465_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	9.2e-24	79.2
AXZ37305.1\|1957532_1957874_-	hypothetical protein	E5G6L5	Salmonella_phage	7.6e-51	85.8
AXZ37306.1\|1957837_1958038_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	6.7e-31	92.4
AXZ37307.1\|1958045_1958555_-	hypothetical protein	A0A1S6L008	Salmonella_phage	1.2e-84	94.1
AXZ37308.1\|1958587_1958830_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	5.2e-38	96.2
AXZ37309.1\|1958949_1959582_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	8.1e-107	91.9
AXZ37310.1\|1959583_1960609_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.2e-194	95.3
1960727:1960773	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2431990 : 2481299

Salmonella_phage(46.3%)

lysis,terminase,capsid,holin,transposase,tail,plate,tRNA,protease,head,portal,integrase

attL 2441802:2441850|attR 2472494:2472542

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ37754.1\|2431990_2433232_+\|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A0F6YPT7	Sinorhizobium_phage	6.5e-92	47.9
AXZ37755.1\|2433335_2434157_-	undecaprenyl-diphosphatase	NA	NA	NA	NA
AXZ37756.1\|2434254_2434614_-	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
AXZ37757.1\|2434720_2435332_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
AXZ37758.1\|2435339_2435678_+	hypothetical protein	NA	NA	NA	NA
AXZ37759.1\|2435581_2436595_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
AXZ37760.1\|2436822_2437038_+	30S ribosomal protein S21	NA	NA	NA	NA
AXZ37761.1\|2437273_2439019_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
AXZ37762.1\|2439033_2441016_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
AXZ37763.1\|2441139_2441646_-	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
2441802:2441850	attL	NA	NA	NA	NA
AXZ37764.1\|2442004_2442223_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	9.5e-39	98.6
AXZ37765.1\|2442289_2443459_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	1.1e-210	97.7
AXZ37766.1\|2443455_2443941_-\|tail	phage tail protein	Q6K1G5	Salmonella_virus	2.3e-85	99.4
AXZ37767.1\|2443955_2446397_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	94.1
AXZ37768.1\|2446389_2446545_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
AXZ37769.1\|2446541_2446877_-\|tail	phage tail assembly protein	S4TTB2	Salmonella_phage	1.4e-52	100.0
AXZ37770.1\|2446939_2447458_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
AXZ37771.1\|2447473_2448661_-\|tail	phage tail protein	Q6K1H0	Salmonella_virus	6.4e-222	99.2
AXZ37772.1\|2448829_2449450_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	2.1e-99	87.7
AXZ37773.1\|2449419_2451513_-\|tail	phage tail protein	A0A1B0VFW4	Salmonella_phage	5.3e-227	97.5
AXZ37774.1\|2451523_2452054_-\|tail	phage tail protein I	Q6K1H3	Salmonella_virus	4.1e-104	100.0
AXZ37775.1\|2452046_2452955_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.6e-159	99.3
AXZ37776.1\|2452961_2453309_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	7.2e-57	98.3
AXZ37777.1\|2453305_2453947_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	1.7e-112	97.7
AXZ37778.1\|2454015_2454465_-	phage virion morphogenesis protein	S4TP59	Salmonella_phage	4.2e-73	99.3
AXZ37779.1\|2454457_2454925_-\|tail	phage tail protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
AXZ37780.1\|2454887_2455061_-\|lysis	phage lysis protein	S4TNY4	Salmonella_phage	1.1e-24	96.5
AXZ37781.1\|2455032_2455446_-\|lysis	LysB family phage lysis regulatory protein	S4TRW3	Salmonella_phage	6.4e-44	98.5
AXZ37782.1\|2455442_2455940_-	lysozyme	S4TUB1	Salmonella_phage	1.2e-92	99.4
AXZ37783.1\|2455926_2456223_-\|holin	holin	S4TP56	Salmonella_phage	4.4e-47	100.0
AXZ37784.1\|2456226_2456430_-\|tail	phage tail protein	S4TTA0	Salmonella_phage	8.8e-31	97.0
AXZ37785.1\|2456429_2456936_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.3e-91	100.0
AXZ37786.1\|2457029_2457779_-\|terminase	terminase	Q6K1I5	Salmonella_virus	3.2e-126	96.4
AXZ37787.1\|2457782_2458850_-\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	2.0e-198	99.4
AXZ37788.1\|2458926_2459781_-\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	1.1e-151	95.1
AXZ37789.1\|2459946_2461716_+	oxidoreductase	A0A0M4RE51	Salmonella_phage	0.0e+00	100.0
AXZ37790.1\|2461715_2462762_+\|portal	phage portal protein	A0A0M4S6E8	Salmonella_phage	4.0e-191	100.0
AXZ37791.1\|2462782_2462983_+	hypothetical protein	NA	NA	NA	NA
AXZ37792.1\|2462896_2463079_-	hypothetical protein	NA	NA	NA	NA
AXZ37793.1\|2463364_2463574_-	hypothetical protein	Q6K1F0	Salmonella_virus	1.4e-31	92.8
AXZ37794.1\|2463781_2464513_-	hypothetical protein	Q37850	Escherichia_phage	1.1e-126	93.0
AXZ37795.1\|2464595_2465036_-	DinI family protein	A0A218M4I0	Erwinia_phage	4.4e-67	93.4
AXZ37796.1\|2465153_2467376_-	replication endonuclease	A0A0M3ULG0	Salmonella_phage	0.0e+00	97.3
AXZ40094.1\|2467372_2467654_-	DUF551 domain-containing protein	NA	NA	NA	NA
AXZ37797.1\|2467678_2467948_-	hypothetical protein	A0A218M4I8	Erwinia_phage	1.1e-33	79.3
AXZ37798.1\|2467944_2468349_-	hypothetical protein	NA	NA	NA	NA
AXZ37799.1\|2468345_2468930_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	7.5e-107	97.4
AXZ37800.1\|2468926_2469154_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	1.6e-25	81.9
AXZ37801.1\|2469153_2469381_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	6.8e-32	100.0
AXZ37802.1\|2469450_2469651_-	hypothetical protein	A0A0M5M7U3	Salmonella_phage	2.3e-31	98.5
AXZ37803.1\|2469637_2469865_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	2.1e-36	97.3
AXZ37804.1\|2469872_2470382_-	hypothetical protein	A0A0M4QWN1	Salmonella_phage	6.2e-89	98.8
AXZ37805.1\|2470412_2470676_-	hypothetical protein	A0A218M4I5	Erwinia_phage	3.3e-38	89.7
AXZ37806.1\|2470806_2471385_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	3.5e-64	63.0
AXZ37807.1\|2471384_2472422_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	1.1e-198	97.1
AXZ37808.1\|2473290_2474402_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.9e-06	25.0
2472494:2472542	attR	NA	NA	NA	NA
AXZ37809.1\|2474444_2475017_-	hypothetical protein	NA	NA	NA	NA
AXZ37810.1\|2475104_2476766_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	1.5e-311	94.2
AXZ37811.1\|2476749_2477106_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	3.3e-57	93.2
AXZ37812.1\|2477246_2477690_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.2e-51	63.9
AXZ37813.1\|2477690_2477981_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	1.8e-29	57.7
AXZ37814.1\|2477973_2478312_-\|head,tail	head-tail adaptor	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-23	46.8
AXZ37815.1\|2478308_2479538_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	2.8e-212	86.2
AXZ37816.1\|2479539_2480100_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	2.2e-87	84.7
AXZ37817.1\|2480144_2481299_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	7.8e-148	67.5

DBSCAN-SWA_7

3553806 : 3574035

Burkholderia_phage(38.1%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ38767.1\|3553806_3554535_-	hypothetical protein	A0A292GAQ8	Xanthomonas_phage	3.5e-13	28.2
AXZ38768.1\|3555272_3555728_-	hypothetical protein	NA	NA	NA	NA
AXZ38769.1\|3555724_3556426_-	DUF4376 domain-containing protein	K7PMH7	Enterobacteria_phage	7.6e-29	45.9
AXZ38770.1\|3556428_3557874_-	short-chain fatty acid transporter	A0A0M3ULH6	Salmonella_phage	5.0e-75	38.1
AXZ38771.1\|3557876_3558509_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
AXZ38772.1\|3558501_3559617_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.5e-100	51.7
AXZ38773.1\|3559607_3559967_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	3.1e-34	63.3
AXZ38774.1\|3560130_3561678_-	hypothetical protein	B9UDL6	Salmonella_phage	2.5e-48	29.9
AXZ38775.1\|3561677_3562607_-	glycosyltransferase	S5FKN0	Shigella_phage	6.7e-150	83.8
AXZ38776.1\|3562603_3562966_-	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
AXZ38777.1\|3563293_3564016_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
AXZ38778.1\|3564025_3565069_-	phage protein D	A4JWL3	Burkholderia_virus	2.9e-77	45.9
AXZ38779.1\|3565056_3565266_-	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AXZ38780.1\|3565265_3566219_-	chemotaxis protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
AXZ38781.1\|3566218_3568585_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.7e-70	30.9
AXZ38782.1\|3568681_3568810_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
AXZ38783.1\|3568769_3569087_-\|tail	phage tail assembly protein	NA	NA	NA	NA
AXZ38784.1\|3569138_3569663_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AXZ38785.1\|3569662_3571090_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	71.2
AXZ38786.1\|3571079_3571277_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AXZ38787.1\|3571273_3571729_-	hypothetical protein	NA	NA	NA	NA
AXZ38788.1\|3571888_3572203_-	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AXZ38789.1\|3572215_3572821_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.0e-61	61.0
AXZ38790.1\|3572823_3573111_-	hypothetical protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
AXZ38791.1\|3573687_3574035_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

DBSCAN-SWA_8

3856182 : 3867960

Salmonella_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ39042.1\|3856182_3857445_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	2.8e-66	35.6
AXZ39043.1\|3857475_3858114_+	hypothetical protein	NA	NA	NA	NA
AXZ39044.1\|3858484_3858715_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AXZ40151.1\|3858776_3859361_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AXZ39045.1\|3859353_3859713_+	hypothetical protein	NA	NA	NA	NA
AXZ39046.1\|3859744_3860029_+	hypothetical protein	NA	NA	NA	NA
AXZ39047.1\|3860025_3860409_+	hypothetical protein	NA	NA	NA	NA
AXZ39048.1\|3860405_3863078_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	2.1e-58	34.4
AXZ39049.1\|3863478_3864240_+	septation initiation protein	NA	NA	NA	NA
AXZ39050.1\|3864239_3864512_+	hypothetical protein	A0A2I8TV89	Erwinia_phage	6.3e-08	46.9
AXZ39051.1\|3864689_3864869_+	hypothetical protein	NA	NA	NA	NA
AXZ39052.1\|3864888_3865200_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	2.4e-27	66.0
AXZ40152.1\|3865214_3865334_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
AXZ39053.1\|3865326_3867960_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.8e-106	31.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032192

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

40424 : 53469

Salmonella_phage(33.33%)

integrase,transposase

attL 35588:35602|attR 52567:52581

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
35588:35602	attL	NA	NA	NA	NA
AXZ35169.1\|40424_41429_-\|transposase	IS110 family transposase IS4321	NA	NA	NA	NA
AXZ35170.1\|41507_44480_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
AXZ35171.1\|44482_45040_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
AXZ35172.1\|45077_45401_-\|transposase	transposase	NA	NA	NA	NA
AXZ35173.1\|45345_46359_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
AXZ35309.1\|46565_47144_+	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
AXZ35174.1\|47312_47660_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AXZ35175.1\|47653_48493_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AXZ35176.1\|48422_48602_-	hypothetical protein	NA	NA	NA	NA
AXZ35177.1\|48620_49121_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXZ35178.1\|49426_49540_-	NTP-binding protein	NA	NA	NA	NA
AXZ35179.1\|49627_50392_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AXZ35180.1\|50593_51430_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AXZ35310.1\|51429_52233_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AXZ35181.1\|52339_53469_-\|transposase	IS3-like element IS1133 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.6e-52	41.1
52567:52581	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP032193

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3878 : 39532

Escherichia_phage(28.57%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ35319.1\|3878_5420_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXZ35407.1\|6818_7592_+	ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
AXZ35320.1\|7572_7854_-	hypothetical protein	NA	NA	NA	NA
AXZ35321.1\|8073_8259_-	hypothetical protein	NA	NA	NA	NA
AXZ35322.1\|8307_9492_+\|transposase	IS4-like element ISEc29 family transposase	A0A0F7LAS3	uncultured_marine_virus	4.5e-50	35.4
AXZ35323.1\|9890_11366_+	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
AXZ35324.1\|11421_12306_+	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
AXZ35325.1\|12664_13207_-	DNA-binding protein	NA	NA	NA	NA
AXZ35326.1\|14091_14796_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AXZ35327.1\|17461_17971_-	ROS/MUCR transcriptional regulator domain protein	NA	NA	NA	NA
AXZ35328.1\|18018_20106_-	conjugal transfer protein TrbC	NA	NA	NA	NA
AXZ35329.1\|20118_21069_-	DsbC family protein	NA	NA	NA	NA
AXZ35408.1\|21079_22342_-	conjugal transfer protein TrbA	NA	NA	NA	NA
AXZ35409.1\|22386_22662_-	lytic transglycosylase	NA	NA	NA	NA
AXZ35410.1\|22886_23270_-	DUF1496 domain-containing protein	NA	NA	NA	NA
AXZ35330.1\|23349_24003_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXZ35331.1\|24095_24353_+	antitoxin	NA	NA	NA	NA
AXZ35332.1\|24354_24687_+	mRNA interferase PemK	NA	NA	NA	NA
AXZ35333.1\|25031_25466_+	peptidase	A0A1W6JNS2	Morganella_phage	4.7e-29	55.4
AXZ35334.1\|25453_26719_+	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	4.0e-113	51.1
AXZ35335.1\|26741_27590_-	3'-5' exonuclease	A0A1D9C9N8	Salinivibrio_phage	5.0e-27	38.9
AXZ35336.1\|27592_27913_-	chromosome segregation protein ParM	NA	NA	NA	NA
AXZ35411.1\|28057_28309_-	hypothetical protein	NA	NA	NA	NA
AXZ35337.1\|28764_28974_-	hypothetical protein	NA	NA	NA	NA
AXZ35338.1\|28976_29195_-	hypothetical protein	NA	NA	NA	NA
AXZ35339.1\|29239_29923_-	hypothetical protein	NA	NA	NA	NA
AXZ35340.1\|29919_30192_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXZ35341.1\|30209_31484_-	RelB antitoxin	NA	NA	NA	NA
AXZ35342.1\|32010_32355_+	hypothetical protein	NA	NA	NA	NA
AXZ35343.1\|32537_33122_+	hypothetical protein	NA	NA	NA	NA
AXZ35344.1\|33583_34288_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXZ35345.1\|34520_35381_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
AXZ35346.1\|35393_35936_+	tunicamycin resistance protein	NA	NA	NA	NA
AXZ35347.1\|36417_36609_-	hypothetical protein	NA	NA	NA	NA
AXZ35348.1\|36614_36860_+	hypothetical protein	NA	NA	NA	NA
AXZ35349.1\|36910_38047_+	DUF3883 domain-containing protein	NA	NA	NA	NA
AXZ35350.1\|38161_39532_+\|transposase	IS1182-like element ISCfr1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032194

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP032192

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP032193

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection