CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP032227	Klebsiella pneumoniae strain AR_0046 plasmid unnamed5, complete sequence	0 crisprs	RT	5
CP032226	Klebsiella pneumoniae strain AR_0046 plasmid unnamed4, complete sequence	0 crisprs	NA	1
CP032225	Klebsiella pneumoniae strain AR_0046 plasmid unnamed3, complete sequence	0 crisprs	DEDDh	1
CP032222	Klebsiella pneumoniae strain AR_0046 chromosome, complete genome	0 crisprs	cas3,csa3,RT,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	6
CP032223	Klebsiella pneumoniae strain AR_0046 plasmid unnamed1, complete sequence	0 crisprs	RT,DinG,c2c10_CAS-V-U3	2
CP032224	Klebsiella pneumoniae strain AR_0046 plasmid unnamed2, complete sequence	0 crisprs	DEDDh	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9092

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ62262.1\|483_741_-	hypothetical protein	NA	NA	NA	NA
AXZ62263.1\|1508_2375_+	RepB family plasmid replication initiator protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
AXZ62264.1\|2551_2821_-	hypothetical protein	NA	NA	NA	NA
AXZ62265.1\|3235_4441_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
AXZ62266.1\|4437_5415_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
AXZ62267.1\|5496_6768_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	4.9e-151	63.3
AXZ62268.1\|6767_7199_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.6e-29	53.3
AXZ62269.1\|7356_7608_+	hypothetical protein	NA	NA	NA	NA
AXZ62270.1\|7607_9092_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.8e-32	35.5

DBSCAN-SWA_2

13814 : 15794

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ62272.1\|13814_14519_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AXZ62305.1\|14543_15794_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0

DBSCAN-SWA_3

21093 : 24148

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ62278.1\|21093_22017_+\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	4.1e-176	98.7
AXZ62279.1\|22209_22428_+	hypothetical protein	NA	NA	NA	NA
AXZ62280.1\|23968_24148_-	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	6.8e-11	60.3

DBSCAN-SWA_4

28299 : 38596

Escherichia_phage(50.0%)

integrase,transposase

attL 30095:30154|attR 42645:43466

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ62281.1\|28299_29004_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXZ62282.1\|29193_30009_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
30095:30154	attL	NA	NA	NA	NA
AXZ62283.1\|30159_30864_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXZ62284.1\|31053_31233_+	hypothetical protein	NA	NA	NA	NA
AXZ62285.1\|31162_32002_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AXZ62286.1\|31995_32343_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AXZ62287.1\|33308_33782_-	trimethoprim-resistant dihydrofolate reductase DfrA1	G3MBI7	Bacillus_virus	3.7e-19	32.1
AXZ62288.1\|33924_34383_-	aminoglycoside N-acetyltransferase AAC(6')-Il	NA	NA	NA	NA
AXZ62289.1\|34476_35277_-	subclass B1 metallo-beta-lactamase VIM-27	NA	NA	NA	NA
AXZ62290.1\|35443_36457_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
AXZ62291.1\|36395_36653_+	hypothetical protein	NA	NA	NA	NA
AXZ62292.1\|36598_37303_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXZ62293.1\|37630_37744_-	NTP-binding protein	NA	NA	NA	NA
AXZ62294.1\|37831_38596_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
42645:43466	attR	NA	NA	NA	NA

DBSCAN-SWA_5

41934 : 44220

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ62299.1\|41934_42639_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXZ62307.1\|42663_44220_+	PAS domain S-box protein	A0A1B0V854	Salmonella_phage	1.1e-83	99.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032226

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

47176 : 70031

Escherichia_phage(57.14%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ62212.1\|47176_47830_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXZ62213.1\|48049_48514_+	mRNA interferase PemK	NA	NA	NA	NA
AXZ62214.1\|48510_48615_+	hypothetical protein	NA	NA	NA	NA
AXZ62215.1\|48650_51548_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
AXZ62216.1\|51642_52248_+	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	9.4e-20	35.3
AXZ62254.1\|53024_53417_+	cysteine hydrolase	NA	NA	NA	NA
AXZ62217.1\|53554_54439_+	EamA family transporter	NA	NA	NA	NA
AXZ62218.1\|54470_55670_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AXZ62219.1\|55748_56426_+	TetR family transcriptional regulator	NA	NA	NA	NA
AXZ62255.1\|56457_56700_-	relaxase	NA	NA	NA	NA
AXZ62220.1\|58321_59026_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXZ62256.1\|59169_59724_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
AXZ62257.1\|59854_60685_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
AXZ62221.1\|61316_62021_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXZ62222.1\|62127_62988_+	aminoglycoside N-acetyltransferase AAC(3)-IIa	NA	NA	NA	NA
AXZ62223.1\|63000_63543_+	tunicamycin resistance protein	NA	NA	NA	NA
AXZ62224.1\|64736_65441_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXZ62225.1\|67762_68095_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
AXZ62226.1\|68141_69017_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
AXZ62227.1\|69326_70031_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP032225

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 108481

118

Salmonella_phage(89.8%)

integrase,tail,terminase,capsid

attL 27796:27820|attR 44169:44193

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ62042.1\|355_1084_-	hypothetical protein	J9Q6K2	Salmonella_phage	1.7e-79	70.7
AXZ62043.1\|1145_2831_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	91.1
AXZ62044.1\|3681_3837_-	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	1.7e-05	61.2
AXZ62045.1\|3836_4262_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	9.8e-56	80.9
AXZ62046.1\|4364_4553_-	hypothetical protein	J9Q800	Salmonella_phage	3.3e-08	52.5
AXZ62047.1\|4549_4828_-	hypothetical protein	NA	NA	NA	NA
AXZ62048.1\|5259_5847_-	ribonuclease HI	J9Q745	Salmonella_phage	3.4e-91	80.2
AXZ62049.1\|6419_6653_-	hypothetical protein	J9Q7H5	Salmonella_phage	7.8e-31	84.0
AXZ62050.1\|6850_7444_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	5.9e-99	85.3
AXZ62051.1\|7628_8462_-	hypothetical protein	J9Q7Z9	Salmonella_phage	5.1e-64	56.4
AXZ62052.1\|8587_9136_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	3.2e-75	74.4
AXZ62154.1\|9132_9714_-	hypothetical protein	I6WLM5	Burkholderia_virus	7.2e-33	55.0
AXZ62053.1\|9936_10356_-	hypothetical protein	J9Q743	Salmonella_phage	1.9e-51	73.4
AXZ62054.1\|10419_11064_-	hypothetical protein	J9Q7H4	Salmonella_phage	3.1e-93	77.1
AXZ62055.1\|11063_11540_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	4.9e-72	79.6
AXZ62056.1\|11536_11950_-	hypothetical protein	J9Q7Z8	Salmonella_phage	4.7e-55	77.4
AXZ62057.1\|11951_13055_-	thymidylate synthase	J9Q6J6	Salmonella_phage	6.7e-181	80.1
AXZ62058.1\|13248_14124_-	phosphoribosyl-ATP pyrophosphohydrolase	J9Q742	Salmonella_phage	2.3e-139	84.7
AXZ62059.1\|14201_15344_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	9.0e-213	95.8
AXZ62060.1\|15474_17778_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	91.1
AXZ62061.1\|17853_18423_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.1e-94	89.9
AXZ62062.1\|18432_19179_-	hypothetical protein	J9Q6J5	Salmonella_phage	2.9e-79	61.7
AXZ62063.1\|19168_21085_-	exonuclease	J9Q741	Salmonella_phage	9.5e-300	84.6
AXZ62155.1\|21081_21276_-	hypothetical protein	J9Q7H1	Salmonella_phage	2.8e-18	66.1
AXZ62064.1\|21314_22400_-	exonuclease SbcCD subunit D	J9Q7S9	Salmonella_phage	5.4e-183	84.5
AXZ62065.1\|22588_23083_-	N-acetyltransferase	J9Q6J3	Salmonella_phage	1.0e-59	67.1
AXZ62066.1\|23158_23803_-	hypothetical protein	J9Q739	Salmonella_phage	3.7e-99	81.1
AXZ62067.1\|23899_24112_-	hypothetical protein	NA	NA	NA	NA
AXZ62068.1\|24123_25221_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.2e-73	47.3
AXZ62069.1\|25672_25885_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
AXZ62070.1\|25884_26220_-	hypothetical protein	J9Q7Z5	Salmonella_phage	2.1e-37	67.6
AXZ62071.1\|26216_26396_-	hypothetical protein	NA	NA	NA	NA
AXZ62072.1\|26929_28006_-	recombinase	J9Q736	Salmonella_phage	3.8e-197	96.4
27796:27820	attL	NA	NA	NA	NA
AXZ62073.1\|28008_28275_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.7e-34	84.1
AXZ62074.1\|28274_29219_-	exonuclease	J9Q7S6	Salmonella_phage	5.4e-171	92.7
AXZ62075.1\|29279_30287_-	regulator	J9Q7Z3	Salmonella_phage	6.0e-144	88.0
AXZ62076.1\|30406_30838_-	hypothetical protein	J9Q6I8	Salmonella_phage	4.0e-65	90.9
AXZ62077.1\|30958_31195_+	hypothetical protein	NA	NA	NA	NA
AXZ62078.1\|31187_31403_+	cold shock protein CspG	A0A1W6JNX5	Morganella_phage	4.5e-25	80.0
AXZ62079.1\|31555_31999_-	hypothetical protein	J9Q7S4	Salmonella_phage	6.4e-58	81.6
AXZ62080.1\|31995_35514_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	93.3
AXZ62081.1\|35488_35692_-	hypothetical protein	J9Q6I7	Salmonella_phage	7.2e-25	80.6
AXZ62082.1\|35694_36927_-	porphyrin biosynthesis protein	J9Q733	Salmonella_phage	1.3e-212	86.6
AXZ62083.1\|37023_39303_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	2.7e-245	63.3
AXZ62084.1\|39905_40286_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXZ62085.1\|40280_41381_-\|integrase	integrase	A0A1P8DTG6	Proteus_phage	1.6e-17	30.0
AXZ62086.1\|41729_42089_+	hypothetical protein	NA	NA	NA	NA
AXZ62087.1\|42153_42564_-	toxin YafO	NA	NA	NA	NA
AXZ62088.1\|42573_43191_-	hypothetical protein	NA	NA	NA	NA
AXZ62156.1\|43285_43531_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.2e-13	47.4
AXZ62089.1\|43659_44505_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	3.8e-91	66.5
44169:44193	attR	NA	NA	NA	NA
AXZ62090.1\|45378_46170_+	hypothetical protein	NA	NA	NA	NA
AXZ62091.1\|47584_47809_-	nuclease	NA	NA	NA	NA
AXZ62092.1\|47936_48152_-	hypothetical protein	NA	NA	NA	NA
AXZ62093.1\|48148_48364_-	hypothetical protein	J9Q6I3	Salmonella_phage	8.5e-24	78.6
AXZ62094.1\|48466_49789_-	DNA ligase	J9Q7G5	Salmonella_phage	5.1e-228	85.9
AXZ62095.1\|49788_50256_-	hypothetical protein	J9Q7R9	Salmonella_phage	3.4e-49	63.9
AXZ62096.1\|50335_51124_-	hypothetical protein	J9Q7Z0	Salmonella_phage	2.6e-70	50.8
AXZ62097.1\|51413_52580_+	hypothetical protein	NA	NA	NA	NA
AXZ62098.1\|52622_53741_-	DNA primase	J9Q720	Salmonella_phage	6.3e-203	91.6
AXZ62099.1\|53893_55234_-	DNA helicase	J9Q7G4	Salmonella_phage	5.4e-241	96.0
AXZ62100.1\|55298_56024_-	hypothetical protein	J9Q7R8	Salmonella_phage	1.9e-128	88.8
AXZ62101.1\|56230_56995_-	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	1.9e-49	41.2
AXZ62102.1\|57010_57373_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.2e-43	97.9
AXZ62103.1\|57372_58038_-	plasmid stability protein	J9Q7R7	Salmonella_phage	2.9e-102	83.7
AXZ62157.1\|58359_58917_+	hypothetical protein	A0A2H4J5U3	uncultured_Caudovirales_phage	1.4e-33	43.8
AXZ62104.1\|59113_59365_-	hypothetical protein	J9Q7R6	Salmonella_phage	5.8e-24	72.3
AXZ62105.1\|59367_60060_-	hypothetical protein	J9Q7Y7	Salmonella_phage	7.0e-120	89.6
AXZ62106.1\|60073_60397_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
AXZ62107.1\|60487_61933_-\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	8.0e-41	38.6
AXZ62108.1\|61985_74156_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	2.4e-29	57.5
AXZ62109.1\|74172_74784_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	4.5e-78	73.9
AXZ62110.1\|74771_75569_-\|tail	phage tail protein	J9Q7R4	Salmonella_phage	5.4e-140	85.3
AXZ62111.1\|75561_76260_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.2e-122	87.4
AXZ62112.1\|76346_76682_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	2.6e-51	84.5
AXZ62113.1\|76725_81258_-\|tail	phage tail tape measure protein	J9Q712	Salmonella_phage	0.0e+00	71.4
AXZ62114.1\|81265_81499_-	hypothetical protein	J9Q7F7	Salmonella_phage	3.4e-34	93.5
AXZ62115.1\|81615_81933_-	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
AXZ62116.1\|81994_82741_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	1.6e-106	83.4
AXZ62117.1\|82808_83201_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.0e-46	67.5
AXZ62118.1\|83202_83676_-	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
AXZ62119.1\|83666_84011_-	hypothetical protein	J9Q7F6	Salmonella_phage	2.8e-53	91.2
AXZ62120.1\|84108_84942_-	hypothetical protein	J9Q7R2	Salmonella_phage	4.8e-131	83.4
AXZ62121.1\|84941_85376_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.9e-63	84.0
AXZ62122.1\|85423_85852_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	7.9e-29	71.6
AXZ62123.1\|85930_86809_-\|capsid	phage major capsid protein	J9Q710	Salmonella_phage	4.7e-153	94.2
AXZ62124.1\|86835_87735_-	hypothetical protein	J9Q7F4	Salmonella_phage	1.0e-123	82.6
AXZ62125.1\|87757_89347_-	hypothetical protein	J9Q7R1	Salmonella_phage	3.9e-275	88.7
AXZ62126.1\|89364_90621_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
AXZ62127.1\|90623_91265_-	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
AXZ62128.1\|91441_91708_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
AXZ62129.1\|91717_92608_-	hypothetical protein	J9Q7I6	Salmonella_phage	5.4e-165	97.0
AXZ62130.1\|92604_93156_-	hypothetical protein	NA	NA	NA	NA
AXZ62131.1\|93145_93787_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	6.8e-109	96.7
AXZ62132.1\|93783_94452_-	chromosome partitioning protein ParB	J9Q6L1	Salmonella_phage	6.6e-107	91.9
AXZ62133.1\|94451_95132_-	chromosome partitioning protein ParB	J9Q756	Salmonella_phage	1.4e-107	89.3
AXZ62134.1\|95215_96775_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	3.1e-280	93.1
AXZ62135.1\|96777_97056_+	hypothetical protein	J9Q7T9	Salmonella_phage	6.2e-27	70.3
AXZ62136.1\|97120_97657_+	hypothetical protein	NA	NA	NA	NA
AXZ62137.1\|98427_98784_+	hypothetical protein	NA	NA	NA	NA
AXZ62138.1\|98833_99364_+	transcriptional regulator	J9Q6L0	Salmonella_phage	2.5e-56	69.6
AXZ62139.1\|99679_100330_+	hypothetical protein	J9Q754	Salmonella_phage	8.4e-107	91.7
AXZ62140.1\|100380_100584_+	hypothetical protein	J9Q7I3	Salmonella_phage	4.1e-28	95.5
AXZ62141.1\|101176_101659_-	hypothetical protein	J9Q805	Salmonella_phage	1.3e-64	70.6
AXZ62158.1\|101671_101863_-	hypothetical protein	NA	NA	NA	NA
AXZ62142.1\|101914_102103_+	hypothetical protein	E5FFJ6	Burkholderia_phage	1.1e-11	61.1
AXZ62143.1\|102130_102412_-	ABC transporter	J9Q753	Salmonella_phage	5.3e-42	83.9
AXZ62144.1\|102538_102946_-	hypothetical protein	NA	NA	NA	NA
AXZ62145.1\|103065_103377_-	hypothetical protein	J9Q7T7	Salmonella_phage	3.0e-30	66.0
AXZ62146.1\|103513_103726_-	hypothetical protein	J9Q804	Salmonella_phage	4.4e-25	77.9
AXZ62147.1\|103738_103957_-	hypothetical protein	J9Q6K7	Salmonella_phage	2.9e-27	81.9
AXZ62148.1\|104518_104710_+	hypothetical protein	NA	NA	NA	NA
AXZ62149.1\|105513_105702_-	hypothetical protein	J9Q6K5	Salmonella_phage	3.6e-18	66.7
AXZ62150.1\|105715_106033_-	hypothetical protein	J9Q750	Salmonella_phage	5.4e-43	75.2
AXZ62151.1\|106231_106660_-	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
AXZ62159.1\|106840_107104_-	hypothetical protein	J9Q7T5	Salmonella_phage	9.7e-30	71.6
AXZ62152.1\|107235_107493_-	hypothetical protein	NA	NA	NA	NA
AXZ62153.1\|107944_108481_-	hypothetical protein	J9Q748	Salmonella_phage	1.6e-74	73.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP032222

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

429482 : 438947

Dickeya_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ57139.1\|429482_430598_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
AXZ57140.1\|430594_432535_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
AXZ57141.1\|432474_432657_+	hypothetical protein	NA	NA	NA	NA
AXZ57142.1\|432611_432833_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AXZ57143.1\|433158_433476_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AXZ57144.1\|433506_435786_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AXZ57145.1\|435907_436126_-	translation initiation factor IF-1	NA	NA	NA	NA
AXZ57146.1\|436479_437181_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AXZ57147.1\|437225_438947_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_2

1102825 : 1113712

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ57750.1\|1102825_1103446_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
AXZ57751.1\|1103438_1104704_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	7.8e-234	99.8
AXZ57752.1\|1104715_1105618_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
AXZ57753.1\|1105878_1106640_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AXZ57754.1\|1106660_1107521_-	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
AXZ57755.1\|1107818_1108079_+	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AXZ57756.1\|1108165_1109254_+	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
AXZ57757.1\|1109284_1110550_-	MFS transporter	NA	NA	NA	NA
AXZ57758.1\|1110604_1113712_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

DBSCAN-SWA_3

1958371 : 2005310

Enterobacteria_phage(26.67%)

capsid,transposase,protease,integrase,head,tail,portal,terminase,lysis

attL 1963310:1963369|attR 2005421:2005484

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ61632.1\|1958371_1958866_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	5.7e-31	50.7
AXZ58566.1\|1958846_1960280_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	8.9e-101	53.0
AXZ58567.1\|1960323_1961031_-	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	27.7
AXZ58568.1\|1961073_1961355_-	hypothetical protein	NA	NA	NA	NA
AXZ61633.1\|1961235_1961502_+	hypothetical protein	NA	NA	NA	NA
AXZ58569.1\|1961893_1963039_+	porin	Q1MVN1	Enterobacteria_phage	8.4e-118	58.7
1963310:1963369	attL	NA	NA	NA	NA
AXZ58570.1\|1963643_1964015_-	hypothetical protein	K7PGV5	Enterobacterial_phage	5.4e-26	52.0
AXZ58571.1\|1963971_1964211_-	DNA polymerase V	I6PD82	Cronobacter_phage	6.8e-22	55.7
AXZ58572.1\|1964287_1965772_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AXZ58573.1\|1965771_1966023_-	hypothetical protein	NA	NA	NA	NA
AXZ58574.1\|1966684_1967521_+	hypothetical protein	NA	NA	NA	NA
AXZ58575.1\|1967553_1968297_-	hypothetical protein	NA	NA	NA	NA
AXZ58576.1\|1968311_1970072_-	SGNH/GDSL hydrolase family protein	A0A286S1P0	Klebsiella_phage	6.7e-50	83.3
AXZ58577.1\|1970149_1973227_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	61.5
AXZ58578.1\|1973223_1973604_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	3.6e-57	79.4
AXZ58579.1\|1973616_1974093_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	4.8e-51	65.8
AXZ58580.1\|1974079_1974553_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.4e-55	62.1
AXZ58581.1\|1974573_1977963_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.5e-303	57.5
AXZ58582.1\|1978023_1978257_-	hypothetical protein	K7PH16	Enterobacteria_phage	3.2e-08	45.8
AXZ58583.1\|1978390_1979890_+\|transposase	IS21 family transposase	NA	NA	NA	NA
AXZ58584.1\|1979886_1980642_+	hypothetical protein	U5N3V8	Enterobacteria_phage	2.9e-34	33.9
AXZ58585.1\|1980746_1981052_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	8.1e-28	64.6
AXZ58586.1\|1981054_1981459_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	1.7e-33	57.7
AXZ58587.1\|1981489_1982194_-	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	7.2e-80	67.4
AXZ58588.1\|1982250_1982598_-	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	4.0e-31	61.1
AXZ58589.1\|1982594_1983044_-	hypothetical protein	Q9MCS9	Enterobacteria_phage	1.9e-62	82.6
AXZ58590.1\|1983040_1983379_-\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.4e-42	74.1
AXZ58591.1\|1983390_1983717_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.2e-40	68.5
AXZ58592.1\|1984055_1985273_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	3.9e-182	81.4
AXZ61634.1\|1985282_1986131_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.0e-128	84.6
AXZ58593.1\|1986143_1987451_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	4.3e-211	84.4
AXZ58594.1\|1987450_1989193_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	2.0e-139	45.6
AXZ58595.1\|1989146_1989611_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	6.3e-48	60.8
AXZ58596.1\|1989793_1990135_-	HNH endonuclease	K7P7P4	Enterobacteria_phage	6.0e-48	74.8
AXZ58597.1\|1990190_1990436_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.2e-18	65.4
AXZ58598.1\|1990635_1991031_+	hypothetical protein	NA	NA	NA	NA
AXZ58599.1\|1991367_1991526_-	rz1 lytic protein	NA	NA	NA	NA
AXZ58600.1\|1991820_1992159_+	hypothetical protein	NA	NA	NA	NA
AXZ58601.1\|1992233_1992698_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	1.6e-43	62.9
AXZ58602.1\|1992694_1993225_-	lysozyme	K7PLY1	Enterobacteria_phage	3.2e-80	80.0
AXZ58603.1\|1993227_1993476_-\|lysis	lysis protein	NA	NA	NA	NA
AXZ58604.1\|1994183_1994762_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	7.6e-51	57.2
AXZ58605.1\|1994775_1995756_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	6.4e-135	67.2
AXZ58606.1\|1995768_1996146_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	6.7e-48	75.2
AXZ58607.1\|1996155_1996965_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	3.5e-110	68.9
AXZ58608.1\|1996961_1997876_-	transcriptional regulator	H2DE83	Erwinia_phage	3.1e-30	59.6
AXZ58609.1\|1997832_1998045_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	6.4e-16	70.9
AXZ58610.1\|1998282_1998744_-	hypothetical protein	K7PJS5	Enterobacterial_phage	6.4e-69	87.5
AXZ58611.1\|1998778_1999021_-	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
AXZ58612.1\|1999118_1999814_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.5e-87	71.3
AXZ58613.1\|2000527_2001445_+	hypothetical protein	A0A1W6JP69	Morganella_phage	1.5e-45	36.5
AXZ58614.1\|2001534_2001834_+	hypothetical protein	K7PJS4	Enterobacterial_phage	7.2e-13	47.6
AXZ58615.1\|2001833_2002619_+	hypothetical protein	C7BGF1	Burkholderia_phage	1.1e-60	52.1
AXZ58616.1\|2003218_2004049_+	hypothetical protein	NA	NA	NA	NA
AXZ58617.1\|2004088_2004316_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	1.1e-29	78.4
AXZ58618.1\|2004317_2005310_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	1.1e-174	86.9
2005421:2005484	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2073256 : 2082636

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ58678.1\|2073256_2074423_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.7
AXZ58679.1\|2074602_2075157_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.9e-52	58.2
AXZ58680.1\|2075171_2076062_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
AXZ58681.1\|2076093_2076963_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.3e-110	66.7
AXZ61640.1\|2076976_2078041_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.8e-105	54.7
AXZ58682.1\|2078195_2079566_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	6.4e-32	25.9
AXZ58683.1\|2079587_2081003_-	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
AXZ58684.1\|2081229_2082636_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7

DBSCAN-SWA_5

2126757 : 2133662

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ58714.1\|2126757_2128236_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3
AXZ58715.1\|2128232_2128955_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AXZ58716.1\|2129273_2130635_+	U32 family peptidase	Q6DW11	Phage_TP	1.1e-206	94.5
AXZ61642.1\|2130880_2131774_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
AXZ58717.1\|2132014_2132788_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.6e-26	36.3
AXZ61643.1\|2132798_2133662_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_6

3139846 : 3190355

Salmonella_phage(23.91%)

capsid,integrase,head,plate,tail,holin,tRNA,portal,terminase,lysis

attL 3159873:3159888|attR 3190892:3190907

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ59623.1\|3139846_3141088_+\|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A0F6YPT7	Sinorhizobium_phage	5.2e-89	50.1
AXZ59624.1\|3141099_3141921_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
AXZ59625.1\|3142119_3142503_-	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
AXZ59626.1\|3142610_3143228_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
AXZ59627.1\|3143489_3143636_-	short-chain dehydrogenase	NA	NA	NA	NA
AXZ59628.1\|3143625_3144450_+	urease accessory protein	NA	NA	NA	NA
AXZ59629.1\|3144459_3144762_+	urease subunit gamma	NA	NA	NA	NA
AXZ59630.1\|3144771_3145092_+	urease subunit beta	NA	NA	NA	NA
AXZ59631.1\|3145084_3146788_+	urease subunit alpha	NA	NA	NA	NA
AXZ59632.1\|3146797_3147274_+	urease accessory protein UreE	NA	NA	NA	NA
AXZ59633.1\|3147275_3147950_+	urease accessory protein UreF	NA	NA	NA	NA
AXZ59634.1\|3147958_3148576_+	urease accessory protein UreG	NA	NA	NA	NA
AXZ59635.1\|3148729_3150337_+	allantoin permease	NA	NA	NA	NA
AXZ59636.1\|3150381_3151395_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.3e-109	59.2
AXZ59637.1\|3151403_3151634_-	hypothetical protein	NA	NA	NA	NA
AXZ59638.1\|3151632_3151848_+	30S ribosomal protein S21	NA	NA	NA	NA
AXZ59639.1\|3151959_3153705_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-75	38.7
AXZ59640.1\|3153923_3155765_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
AXZ59641.1\|3155864_3156371_-	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
AXZ59642.1\|3156729_3156948_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	3.2e-34	88.9
AXZ59643.1\|3157041_3157449_+	hypothetical protein	S4TTB4	Salmonella_phage	1.2e-26	44.3
AXZ59644.1\|3157489_3158650_-	phage late control D family protein	Q7Y4C6	Escherichia_virus	8.3e-174	80.6
AXZ59645.1\|3158649_3159129_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.3e-69	80.9
AXZ59646.1\|3159145_3161584_-\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	2.1e-299	73.8
3159873:3159888	attL	NA	NA	NA	NA
AXZ59647.1\|3161576_3161714_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	2.2e-17	91.1
AXZ59648.1\|3161728_3162004_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.4e-31	77.3
AXZ59649.1\|3162064_3162580_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.2e-68	75.0
AXZ59650.1\|3162593_3163775_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	7.9e-196	86.6
AXZ59651.1\|3163884_3164964_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	4.7e-30	43.3
AXZ59652.1\|3164975_3165704_-	hypothetical protein	NA	NA	NA	NA
AXZ59653.1\|3165709_3167974_-	hypothetical protein	B5TAB2	Burkholderia_phage	7.0e-108	40.8
AXZ59654.1\|3167975_3168578_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.0e-53	57.6
AXZ59655.1\|3168570_3169479_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	5.2e-115	72.2
AXZ59656.1\|3169483_3169831_-\|plate	baseplate assembly protein	Q7Y4D7	Escherichia_virus	4.9e-45	77.4
AXZ59657.1\|3169827_3170469_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	2.0e-92	77.5
AXZ59658.1\|3170811_3171855_-	hypothetical protein	NA	NA	NA	NA
AXZ59659.1\|3172183_3172633_-	phage virion morphogenesis protein	O80313	Escherichia_phage	4.7e-48	68.0
AXZ59660.1\|3172625_3173093_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	9.1e-63	74.2
AXZ59661.1\|3173055_3173307_-\|holin	holin	S4TNY4	Salmonella_phage	2.6e-24	72.5
AXZ59662.1\|3173188_3173620_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	1.1e-41	66.9
AXZ59663.1\|3173616_3174114_-	lysozyme	A0A0F7LBS0	Escherichia_phage	4.8e-78	84.8
AXZ59664.1\|3174100_3174391_-\|holin	holin	A0A0M5M1H1	Salmonella_phage	2.2e-35	80.6
AXZ59665.1\|3174395_3174599_-\|tail	phage tail protein	S4TTA0	Salmonella_phage	9.5e-25	79.1
AXZ59666.1\|3174598_3175105_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	5.4e-61	84.3
AXZ59667.1\|3175201_3175945_-\|terminase	terminase	Q94MJ2	Enterobacteria_phage	9.6e-99	78.9
AXZ59668.1\|3175948_3177007_-\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	4.9e-165	83.8
AXZ59669.1\|3177080_3177935_-\|capsid	capsid scaffolding protein	Q94MB7	Escherichia_virus	9.6e-127	81.3
AXZ59670.1\|3178100_3179870_+	oxidoreductase	A0A0F7LCK3	Escherichia_phage	6.3e-306	87.9
AXZ59671.1\|3179869_3180913_+\|portal	phage portal protein	M1SV64	Escherichia_phage	4.4e-166	82.1
AXZ59672.1\|3181425_3181620_-	hypothetical protein	S4TRZ0	Salmonella_phage	4.7e-13	64.1
AXZ59673.1\|3181618_3182050_+	hypothetical protein	S4TUD6	Salmonella_phage	2.9e-71	93.7
AXZ59674.1\|3182188_3183139_-	RNA-directed DNA polymerase	E5E3S8	Burkholderia_phage	8.7e-36	37.7
AXZ59675.1\|3183116_3183425_-	XRE family transcriptional regulator	E5E3S9	Burkholderia_phage	2.4e-11	38.1
AXZ59676.1\|3184045_3184486_-	DinI family protein	A0A218M4I0	Erwinia_phage	3.4e-67	95.6
AXZ59677.1\|3184604_3186821_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	95.1
AXZ59678.1\|3186822_3187044_-	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	5.5e-34	95.9
AXZ59679.1\|3187043_3187271_-	DUF2732 domain-containing protein	A0A218M4I9	Erwinia_phage	2.9e-30	97.3
AXZ59680.1\|3187338_3187677_-	hypothetical protein	A0A218M4I7	Erwinia_phage	1.6e-53	93.8
AXZ61679.1\|3187640_3187841_-	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	8.1e-29	92.4
AXZ59681.1\|3187848_3188358_-	hypothetical protein	A0A0M4QWN1	Salmonella_phage	8.9e-88	96.4
AXZ59682.1\|3188388_3188652_-	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
AXZ59683.1\|3188781_3189357_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	1.2e-59	58.2
AXZ59684.1\|3189356_3190355_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	4.5e-192	98.2
3190892:3190907	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. CP032223

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

38054 : 52481

Salmonella_phage(28.57%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ61798.1\|38054_39296_-	hypothetical protein	A0A2P9HXK7	Yersinia_phage	6.7e-12	28.9
AXZ61799.1\|40179_40635_-	hypothetical protein	NA	NA	NA	NA
AXZ61800.1\|40922_41531_-	hypothetical protein	K4JV11	Caulobacter_phage	1.5e-25	42.2
AXZ61801.1\|41600_42050_-\|tail	phage tail protein	A0A1I9KFG8	Aeromonas_phage	1.3e-18	40.7
AXZ61802.1\|42059_42245_-	hypothetical protein	A0A1V0E5M0	Salmonella_phage	1.6e-10	67.4
AXZ61803.1\|42501_43269_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	3.5e-43	62.7
AXZ61804.1\|43332_43857_-	hypothetical protein	NA	NA	NA	NA
AXZ61805.1\|44310_44598_-	hypothetical protein	NA	NA	NA	NA
AXZ61806.1\|44878_45151_-	hypothetical protein	I7B2L9	Escherichia_phage	1.5e-12	48.9
AXZ61960.1\|45742_45937_-	hypothetical protein	NA	NA	NA	NA
AXZ61807.1\|48086_48473_-	hypothetical protein	H6WRY2	Salmonella_phage	3.7e-17	85.1
AXZ61808.1\|48565_48889_-	hypothetical protein	E5AGF3	Erwinia_phage	1.6e-13	46.9
AXZ61809.1\|48889_49534_-	hypothetical protein	A0A0U4JEF1	Pseudomonas_phage	1.4e-05	39.8
AXZ61810.1\|49530_49758_-	hypothetical protein	A9YWV3	Burkholderia_phage	1.5e-10	49.4
AXZ61811.1\|50235_50424_-	hypothetical protein	NA	NA	NA	NA
AXZ61812.1\|50420_50918_-	hypothetical protein	A0A2I6TCG8	Escherichia_phage	2.6e-23	67.1
AXZ61813.1\|51010_51229_-	hypothetical protein	R9TRD3	Aeromonas_phage	4.4e-20	66.7
AXZ61814.1\|51394_51646_-	hypothetical protein	S5MQM0	Escherichia_phage	1.9e-22	76.7
AXZ61815.1\|51765_52080_-	hypothetical protein	NA	NA	NA	NA
AXZ61816.1\|52160_52481_-	hypothetical protein	J9Q750	Salmonella_phage	1.7e-28	50.9

DBSCAN-SWA_2

75447 : 83435

Burkholderia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ61839.1\|75447_75765_-	DUF3846 domain-containing protein	A0A2H4P7A4	Pseudomonas_phage	3.2e-11	47.7
AXZ61840.1\|75792_76041_-	hypothetical protein	NA	NA	NA	NA
AXZ61841.1\|76620_77823_+	restriction endonuclease	E5E3X4	Burkholderia_phage	1.8e-33	37.7
AXZ61842.1\|77912_79328_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.1e-106	50.9
AXZ61843.1\|79399_79729_-	hypothetical protein	A0A060D1I0	Salmonella_phage	5.7e-11	62.2
AXZ61844.1\|79817_80252_-	hypothetical protein	NA	NA	NA	NA
AXZ61963.1\|80284_80545_-	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	5.9e-11	41.0
AXZ61845.1\|80553_80757_-	hypothetical protein	NA	NA	NA	NA
AXZ61846.1\|80798_81242_-	hypothetical protein	NA	NA	NA	NA
AXZ61847.1\|81472_81832_+	hypothetical protein	NA	NA	NA	NA
AXZ61848.1\|82016_82427_-	DNA-binding protein	Q71TH9	Escherichia_phage	2.9e-41	60.0
AXZ61849.1\|82551_82866_+	hypothetical protein	NA	NA	NA	NA
AXZ61850.1\|82856_83435_-	HNH endonuclease	W0LI46	Edwardsiella_phage	1.2e-40	57.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. CP032224

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8233 : 71164

Klebsiella_phage(80.0%)

head,tail,portal,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXZ61975.1\|8233_10156_+	protelomerase	Q6UAV6	Klebsiella_phage	0.0e+00	93.4
AXZ61976.1\|10210_10990_-	hypothetical protein	O64341	Escherichia_phage	3.3e-118	80.9
AXZ61977.1\|10986_11217_-	hypothetical protein	NA	NA	NA	NA
AXZ61978.1\|11213_11552_-	host cell division inhibitor Icd-like protein	Q77WP0	Escherichia_phage	1.7e-26	79.5
AXZ61979.1\|11910_13044_+	hypothetical protein	NA	NA	NA	NA
AXZ61980.1\|13070_13595_-	hypothetical protein	NA	NA	NA	NA
AXZ61981.1\|13694_14027_-	hypothetical protein	O64344	Escherichia_phage	2.5e-46	86.2
AXZ61982.1\|14029_14356_-	hypothetical protein	O64345	Escherichia_phage	4.7e-42	72.9
AXZ61983.1\|14342_14549_-	hypothetical protein	NA	NA	NA	NA
AXZ61984.1\|14541_18546_-	origin of replication binding family protein	A0A2I6TD01	Escherichia_phage	0.0e+00	81.4
AXZ61985.1\|18796_19405_-	XRE family transcriptional regulator	Q6UAU6	Klebsiella_phage	9.6e-105	92.6
AXZ62038.1\|19485_19695_+	hypothetical protein	Q6UAU5	Klebsiella_phage	7.7e-30	92.8
AXZ61986.1\|19684_20422_+	phage antitermination protein	Q6UAU4	Klebsiella_phage	2.2e-119	84.5
AXZ61987.1\|20402_20624_+	hypothetical protein	A0A2I6TCB2	Escherichia_phage	2.4e-29	74.0
AXZ61988.1\|20833_21442_+	3'-5' exonuclease	Q6UAU3	Klebsiella_phage	2.5e-97	87.5
AXZ61989.1\|22042_22288_+	hypothetical protein	G8C7U9	Escherichia_phage	5.1e-25	83.1
AXZ61990.1\|22280_22607_+	hypothetical protein	Q6UAT7	Klebsiella_phage	1.9e-51	93.5
AXZ61991.1\|22627_22855_+	hypothetical protein	O64355	Escherichia_phage	2.8e-25	80.3
AXZ61992.1\|22958_23162_+	hypothetical protein	Q6UAT5	Klebsiella_phage	3.5e-19	76.6
AXZ61993.1\|23206_23494_-	XRE family transcriptional regulator	Q6UAT4	Klebsiella_phage	1.7e-43	96.8
AXZ61994.1\|23493_23802_-	type II toxin-antitoxin system RelE/ParE family toxin	Q6UAT3	Klebsiella_phage	3.9e-46	94.2
AXZ62039.1\|23972_24194_+	hypothetical protein	O64358	Escherichia_phage	3.0e-32	90.4
AXZ61995.1\|24205_24433_+	hypothetical protein	Q6UAT1	Klebsiella_phage	1.6e-28	84.0
AXZ61996.1\|24750_25812_+	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	1.6e-171	93.2
AXZ61997.1\|25870_26182_+	hypothetical protein	Q6UAS9	Klebsiella_phage	6.3e-44	89.1
AXZ61998.1\|26178_26670_+	hypothetical protein	Q6UAS8	Klebsiella_phage	1.9e-82	90.2
AXZ61999.1\|26686_27163_+	hypothetical protein	Q6UAS7	Klebsiella_phage	1.7e-61	79.7
AXZ62000.1\|27416_27716_+	DUF4406 domain-containing protein	Q6UAS4	Klebsiella_phage	3.0e-51	96.0
AXZ62001.1\|27984_28623_+	hypothetical protein	Q6UAS3	Klebsiella_phage	9.0e-45	44.7
AXZ62002.1\|28622_28985_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	2.0e-62	93.3
AXZ62003.1\|28981_29305_+	hypothetical protein	NA	NA	NA	NA
AXZ62004.1\|29304_29733_+	hypothetical protein	Q6UAS0	Klebsiella_phage	2.7e-37	59.0
AXZ62040.1\|29818_30019_+	hypothetical protein	Q6UAR8	Klebsiella_phage	3.4e-11	90.9
AXZ62005.1\|30149_30584_+\|terminase	terminase	Q6UAY1	Klebsiella_phage	2.4e-73	95.8
AXZ62006.1\|30618_32328_+\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	0.0e+00	95.1
AXZ62007.1\|32321_32501_+	hypothetical protein	Q6UAX9	Klebsiella_phage	2.4e-16	80.7
AXZ62008.1\|32500_33760_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	8.9e-222	89.5
AXZ62009.1\|33796_34717_+	S49 family peptidase	Q6UAX7	Klebsiella_phage	1.9e-149	88.2
AXZ62010.1\|34794_36081_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	2.2e-215	89.0
AXZ62011.1\|36139_36400_+	hypothetical protein	Q6UAX5	Klebsiella_phage	4.3e-22	62.7
AXZ62012.1\|36380_36698_+\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
AXZ62013.1\|36694_37033_+\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
AXZ62014.1\|37013_37403_+	hypothetical protein	Q6UAX2	Klebsiella_phage	5.3e-56	84.5
AXZ62015.1\|37399_37801_+	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	93.2
AXZ62016.1\|37832_38294_+\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	1.0e-66	83.7
AXZ62017.1\|38351_38717_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
AXZ62018.1\|38737_38950_+	hypothetical protein	Q6UAW9	Klebsiella_phage	1.4e-31	87.5
AXZ62019.1\|38949_42306_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	86.6
AXZ62020.1\|42305_42644_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
AXZ62021.1\|42640_43396_+\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	6.7e-124	80.1
AXZ62022.1\|43397_44108_+	peptidase P60	Q6UAW4	Klebsiella_phage	6.7e-134	89.8
AXZ62023.1\|44154_44982_+	hypothetical protein	A0A0P0IYG9	Acinetobacter_phage	2.3e-08	44.0
AXZ62024.1\|44998_45592_+\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	3.7e-85	80.7
AXZ62025.1\|45654_57813_+	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.6
AXZ62026.1\|57816_58125_+	hypothetical protein	A0A248SL87	Klebsiella_phage	1.6e-28	54.5
AXZ62027.1\|58127_58775_+	hypothetical protein	A0A248SKJ6	Klebsiella_phage	1.9e-74	58.8
AXZ62028.1\|58878_59112_+	cor protein	Q38624	Escherichia_phage	1.1e-21	57.9
AXZ62029.1\|59189_60335_+\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	1.7e-38	38.3
AXZ62030.1\|60409_61387_-	ParB/RepB/Spo0J family plasmid partition protein	Q6UAV8	Klebsiella_phage	2.6e-160	89.5
AXZ62031.1\|61389_62553_-	plasmid-partitioning protein SopA	Q6UAV7	Klebsiella_phage	2.1e-225	98.4
AXZ62032.1\|64751_65729_+	ParB/RepB/Spo0J family plasmid partition protein	Q6UAV8	Klebsiella_phage	2.6e-160	89.5
AXZ62033.1\|67023_67257_-	cor protein	Q38624	Escherichia_phage	1.1e-21	57.9
AXZ62034.1\|67360_68008_-	hypothetical protein	A0A248SKJ6	Klebsiella_phage	1.9e-74	58.8
AXZ62035.1\|68321_70931_-	DUF1983 domain-containing protein	A0A0P0IKE4	Klebsiella_phage	7.7e-18	46.2
AXZ62036.1\|70930_71164_-	hypothetical protein	Q6UAW1	Klebsiella_phage	1.3e-06	62.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage