CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	11 crisprs	cas3,DEDDh,DinG,csa3,WYL	3	4	10	0
AP018924	Staphylococcus aureus JMUB3031 plasmid pJMUB3031 DNA, complete genome	0 crisprs	csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: AP018923_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_1

654588-654679

Orphan

Consensus_repeat	Method
CAACTGCATAAAAGCCTCTAATCGCTAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018923_1

>merge|AP018923|1|654588-654679|CRISPRCasFinder
CAACTGCATAAAAGCCTCTAATCGCTAAAGGTGAAGAGGAACGCAGTTGGCTTGCTTGCGCACAACTGCATAAAAGCCTCTAATCGCTAAAG

>AP018923|1|1|654588-654679|CRISPRCasFinder
CAACTGCATAAAAGCCTCTAATCGCTAAAG	GTGAAGAGGAACGCAGTTGGCTTGCTTGCGCA
CAACTGCATAAAAGCCTCTAATCGCTAAAG

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG10016.1\|644465_645092_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|335700
AP018923.1\|BBG10030.1\|658391_658898_+\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG10025.1\|653825_654461_+\|putative-endonuclease-III	unknown	unknown	gnl\|CDD\|225140
AP018923.1\|BBG10028.1\|656752_657472_+\|L-2-haloalkanoic-acid-dehalogenase	unknown	unknown	gnl\|CDD\|223943
AP018923.1\|BBG10027.1\|655699_656698_+\|transport-system-permease-protein	unknown	unknown	gnl\|CDD\|376439
AP018923.1\|BBG10031.1\|659059_659776_+\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG10024.1\|651773_653435_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
AP018923.1\|BBG10032.1\|659944_660733_+\|putative-esterase/lipase	unknown	unknown	gnl\|CDD\|223669
AP018923.1\|BBG10034.1\|662097_662283_+\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG10022.1\|650073_651084_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|181842
AP018923.1\|BBG10033.1\|660982_661357_-\|accessory-regulator-A	unknown	unknown	gnl\|CDD\|130944
AP018923.1\|BBG10019.1\|647214_647691_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366181
AP018923.1\|BBG10018.1\|646510_646936_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223728
AP018923.1\|BBG10035.1\|662304_663234_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225778
AP018923.1\|BBG10026.1\|654711_655599_+\|periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|238563
AP018923.1\|BBG10023.1\|651360_651777_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226896
AP018923.1\|BBG10029.1\|657455_658256_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223669
AP018923.1\|BBG10020.1\|647730_649026_+\|putative-phosphohydrolase	unknown	unknown	gnl\|CDD\|224004
AP018923.1\|BBG10017.1\|645361_646300_+\|putative-oxidoreducatse	unknown	unknown	gnl\|CDD\|381309
AP018923.1\|BBG10021.1\|649068_649575_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378039

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG10016.1\|644465_645092_+\|hypothetical-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	4.44435e-60
AP018923.1\|BBG10025.1\|653825_654461_+\|putative-endonuclease-III	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	6.89847e-90
AP018923.1\|BBG10028.1\|656752_657472_+\|L-2-haloalkanoic-acid-dehalogenase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
AP018923.1\|BBG10027.1\|655699_656698_+\|transport-system-permease-protein	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.85545e-49
AP018923.1\|BBG10024.1\|651773_653435_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
AP018923.1\|BBG10032.1\|659944_660733_+\|putative-esterase/lipase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.91231e-35
AP018923.1\|BBG10022.1\|650073_651084_+\|alcohol-dehydrogenase	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
AP018923.1\|BBG10033.1\|660982_661357_-\|accessory-regulator-A	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
AP018923.1\|BBG10019.1\|647214_647691_+\|hypothetical-protein	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
AP018923.1\|BBG10018.1\|646510_646936_+\|hypothetical-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	1.91552e-22
AP018923.1\|BBG10035.1\|662304_663234_-\|hypothetical-protein	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	6.05558e-37
AP018923.1\|BBG10026.1\|654711_655599_+\|periplasmic-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	5.51028e-73
AP018923.1\|BBG10023.1\|651360_651777_+\|hypothetical-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	6.64437e-58
AP018923.1\|BBG10029.1\|657455_658256_+\|hypothetical-protein	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.45049e-26
AP018923.1\|BBG10020.1\|647730_649026_+\|putative-phosphohydrolase	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.70707e-150
AP018923.1\|BBG10017.1\|645361_646300_+\|putative-oxidoreducatse	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	7.3194e-168
AP018923.1\|BBG10021.1\|649068_649575_+\|hypothetical-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	1.08203e-97

>AP018923.1|BBG10025.1|653825_654461_+|putative-endonuclease-III
MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQVKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>AP018923.1|BBG10024.1|651773_653435_+|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>AP018923.1|BBG10023.1|651360_651777_+|hypothetical-protein
MDKKVSIQTKQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLDVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>AP018923.1|BBG10022.1|650073_651084_+|alcohol-dehydrogenase
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>AP018923.1|BBG10021.1|649068_649575_+|hypothetical-protein
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>AP018923.1|BBG10020.1|647730_649026_+|putative-phosphohydrolase
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>AP018923.1|BBG10019.1|647214_647691_+|hypothetical-protein
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>AP018923.1|BBG10018.1|646510_646936_+|hypothetical-protein
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDF
>AP018923.1|BBG10017.1|645361_646300_+|putative-oxidoreducatse
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDNNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVVENIKAADIVLSDDEIQYIDELFPIED
>AP018923.1|BBG10016.1|644465_645092_+|hypothetical-protein
MLLCESKIINKNPKYRIIKYNDEYLMVDIISTWISLFFPFINWFIPKEYVKISREEFENLNIVKPAKKNVFWPVAGSSALLGVALRKYTHLLDIQLDKKLVIAICCITFIGILIFYVRLIKKSSLNIYNTKNKRSKIFLIPTLKNVCFTLFGYILFGGLTMLFLDALLSMSYQNIIVYFVWIAVIMGFFLVNIALIIDKNIHVILKNQ
>AP018923.1|BBG10026.1|654711_655599_+|periplasmic-binding-protein
MKKSLIAFILIFMLVLSGCGMKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKEGKKQFDALNLNKEELLKEKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>AP018923.1|BBG10027.1|655699_656698_+|transport-system-permease-protein
MIAIMNVIIDERKENAMTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVIGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>AP018923.1|BBG10028.1|656752_657472_+|L-2-haloalkanoic-acid-dehalogenase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>AP018923.1|BBG10029.1|657455_658256_+|hypothetical-protein
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAQLAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLMLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTASFINKHHDEKHV
>AP018923.1|BBG10030.1|658391_658898_+|hypothetical-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>AP018923.1|BBG10031.1|659059_659776_+|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>AP018923.1|BBG10032.1|659944_660733_+|putative-esterase/lipase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLNFLKSVS
>AP018923.1|BBG10033.1|660982_661357_-|accessory-regulator-A
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>AP018923.1|BBG10034.1|662097_662283_+|hypothetical-protein
MLLIWCKLLKNNINLGLKNELTIEFAKLKFVVSKYTTQINAFLKIFRPQKNSLSLLKIITS
>AP018923.1|BBG10035.1|662304_663234_-|hypothetical-protein
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSITLLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF

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Crispr_ID: AP018923_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_2

811558-811638

Unclear

Consensus_repeat	Method
TTCTTTATGTTGGGGCCCCGCCAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018923_2

>merge|AP018923|2|811558-811638|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCTTTATGTTGGGGCCCCGCCAACT

>AP018923|2|2|811558-811638|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACT	TGCATTGTTTGTAGAATTTCTTTTCGAAA
TTCTTTATGTTGGGGCCCCGCCAACT

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG10180.1\|815658_816594_+\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|273540
AP018923.1\|BBG10172.1\|805276_805927_+\|HD-domain-protein	unknown	unknown	gnl\|CDD\|378993
AP018923.1\|BBG10179.1\|814152_815592_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276808
AP018923.1\|BBG10171.1\|804263_805103_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226451
AP018923.1\|BBG10177.1\|812812_813652_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
AP018923.1\|BBG10170.1\|802859_803855_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
AP018923.1\|BBG10185.1\|820889_821477_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
AP018923.1\|BBG10181.1\|816939_817164_-\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG10184.1\|819372_820317_+\|sporulation-regulator-WhiA	unknown	unknown	gnl\|CDD\|273194
AP018923.1\|BBG10182.1\|817358_818270_+\|nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|224574
AP018923.1\|BBG10174.1\|806428_808414_+\|UvrABC-system-protein-B	unknown	unknown	gnl\|CDD\|235395
AP018923.1\|BBG10175.1\|808421_811268_+\|excinuclease-ABC,-A-subunit	unknown	unknown	gnl\|CDD\|234734
AP018923.1\|BBG10166.1\|798176_798488_+\|putative-ComF-operon-protein-3	unknown	unknown	gnl\|CDD\|223970
AP018923.1\|BBG10183.1\|818266_819262_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
AP018923.1\|BBG10168.1\|798912_799485_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224461
AP018923.1\|BBG10176.1\|811874_812807_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
AP018923.1\|BBG10169.1\|799898_802430_+\|protein-translocase-subunit-SecA1	unknown	unknown	gnl\|CDD\|237259
AP018923.1\|BBG10167.1\|798465_798852_+\|putative-ComF-operon-protein-3	unknown	unknown	gnl\|CDD\|223970
AP018923.1\|BBG10178.1\|813659_814145_+\|putative-acetyltransferase	unknown	unknown	gnl\|CDD\|100053
AP018923.1\|BBG10173.1\|805923_806160_+\|putative-CsbA-protein	unknown	unknown	gnl\|CDD\|227234

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG10180.1\|815658_816594_+\|thioredoxin-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
AP018923.1\|BBG10172.1\|805276_805927_+\|HD-domain-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
AP018923.1\|BBG10179.1\|814152_815592_+\|hypothetical-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	3.6566e-06
AP018923.1\|BBG10171.1\|804263_805103_+\|hypothetical-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.82721e-42
AP018923.1\|BBG10177.1\|812812_813652_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.82832e-120
AP018923.1\|BBG10170.1\|802859_803855_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
AP018923.1\|BBG10185.1\|820889_821477_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
AP018923.1\|BBG10184.1\|819372_820317_+\|sporulation-regulator-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
AP018923.1\|BBG10182.1\|817358_818270_+\|nucleotide-binding-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
AP018923.1\|BBG10174.1\|806428_808414_+\|UvrABC-system-protein-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
AP018923.1\|BBG10175.1\|808421_811268_+\|excinuclease-ABC,-A-subunit	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
AP018923.1\|BBG10166.1\|798176_798488_+\|putative-ComF-operon-protein-3	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	3.34128e-11
AP018923.1\|BBG10183.1\|818266_819262_+\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
AP018923.1\|BBG10168.1\|798912_799485_+\|hypothetical-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
AP018923.1\|BBG10176.1\|811874_812807_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
AP018923.1\|BBG10169.1\|799898_802430_+\|protein-translocase-subunit-SecA1	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
AP018923.1\|BBG10167.1\|798465_798852_+\|putative-ComF-operon-protein-3	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.32425e-33
AP018923.1\|BBG10178.1\|813659_814145_+\|putative-acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
AP018923.1\|BBG10173.1\|805923_806160_+\|putative-CsbA-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34

>AP018923.1|BBG10175.1|808421_811268_+|excinuclease-ABC,-A-subunit
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>AP018923.1|BBG10174.1|806428_808414_+|UvrABC-system-protein-B
MVEHYPFKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>AP018923.1|BBG10173.1|805923_806160_+|putative-CsbA-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>AP018923.1|BBG10172.1|805276_805927_+|HD-domain-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>AP018923.1|BBG10171.1|804263_805103_+|hypothetical-protein
MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKTPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>AP018923.1|BBG10170.1|802859_803855_+|peptide-chain-release-factor-2
MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>AP018923.1|BBG10169.1|799898_802430_+|protein-translocase-subunit-SecA1
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>AP018923.1|BBG10168.1|798912_799485_+|hypothetical-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>AP018923.1|BBG10167.1|798465_798852_+|putative-ComF-operon-protein-3
MKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>AP018923.1|BBG10166.1|798176_798488_+|putative-ComF-operon-protein-3
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKHLNQDEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFFERLLFM
>AP018923.1|BBG10176.1|811874_812807_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>AP018923.1|BBG10177.1|812812_813652_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYVENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEKLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>AP018923.1|BBG10178.1|813659_814145_+|putative-acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>AP018923.1|BBG10179.1|814152_815592_+|hypothetical-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEGSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKMNKMIEFLLSI
>AP018923.1|BBG10180.1|815658_816594_+|thioredoxin-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>AP018923.1|BBG10181.1|816939_817164_-|hypothetical-protein
MKTRLQQAFFNSSQGPQHREFRKEILQAMRVGVWAPTQRISKRISTDNASWRGPNTEAYEKSAYDNVRVGVGQR
>AP018923.1|BBG10182.1|817358_818270_+|nucleotide-binding-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>AP018923.1|BBG10183.1|818266_819262_+|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>AP018923.1|BBG10184.1|819372_820317_+|sporulation-regulator-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>AP018923.1|BBG10185.1|820889_821477_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK

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Crispr_ID: AP018923_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_3

865679-865760

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018923_3

>merge|AP018923|3|865679-865760|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>AP018923|3|3|865679-865760|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG10241.1\|874033_875275_+\|selenocysteine-lyase	unknown	unknown	gnl\|CDD\|131034
AP018923.1\|BBG10234.1\|867240_868266_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224058
AP018923.1\|BBG10228.1\|861787_862165_-\|transposase-C-for-transposon-Tn554	unknown	unknown	unknown
AP018923.1\|BBG10239.1\|871752_872514_+\|ABC-transporter-ATP-binding-protein-homologue	unknown	unknown	gnl\|CDD\|223473
AP018923.1\|BBG10232.1\|866315_866702_+\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|224572
AP018923.1\|BBG10238.1\|870573_871425_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224946
AP018923.1\|BBG10223.1\|857450_857831_+\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|234918
AP018923.1\|BBG10229.1\|862171_864064_-\|transposase-B-for-transposon-Tn554	unknown	unknown	gnl\|CDD\|271187
AP018923.1\|BBG10225.1\|858826_859489_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225136
AP018923.1\|BBG10237.1\|870146_870341_+\|CsbD-like-family-protein	unknown	unknown	gnl\|CDD\|225777
AP018923.1\|BBG10227.1\|860854_861637_-\|streptomycin-3''-adenylyltransferase	unknown	unknown	gnl\|CDD\|184296
AP018923.1\|BBG10231.1\|865311_865575_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395
AP018923.1\|BBG10226.1\|859997_860729_+\|rRNA-adenine-N-6-methyltransferase	unknown	unknown	gnl\|CDD\|366074
AP018923.1\|BBG10233.1\|866694_866991_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
AP018923.1\|BBG10236.1\|868971_869793_+\|lipoprotein	unknown	unknown	gnl\|CDD\|224381
AP018923.1\|BBG10235.1\|868258_868954_+\|ABC-transporter,-permease-protein-homolog	unknown	unknown	gnl\|CDD\|224922
AP018923.1\|BBG10222.1\|856936_857293_+\|transcriptional-regulator,-Spx/MgsR-family-protein	unknown	unknown	gnl\|CDD\|239334
AP018923.1\|BBG10224.1\|858009_858708_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395
AP018923.1\|BBG10230.1\|864060_865146_-\|transposase-A-for-transposon-Tn554	unknown	unknown	gnl\|CDD\|271186
AP018923.1\|BBG10240.1\|872611_873919_+\|ABC-transporter-associated-protein	unknown	unknown	gnl\|CDD\|223791

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG10241.1\|874033_875275_+\|selenocysteine-lyase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
AP018923.1\|BBG10234.1\|867240_868266_+\|ABC-transporter-family-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
AP018923.1\|BBG10239.1\|871752_872514_+\|ABC-transporter-ATP-binding-protein-homologue	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
AP018923.1\|BBG10232.1\|866315_866702_+\|toprim-domain-containing-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
AP018923.1\|BBG10238.1\|870573_871425_-\|hypothetical-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	4.58436e-76
AP018923.1\|BBG10223.1\|857450_857831_+\|glycine-cleavage-system-protein-H	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.95269e-69
AP018923.1\|BBG10229.1\|862171_864064_-\|transposase-B-for-transposon-Tn554	gnl\|CDD\|271187	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain. This family includes putative Transposase B from transposon Tn554. It belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	6.6262e-52
AP018923.1\|BBG10225.1\|858826_859489_-\|hypothetical-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	5.63343e-23
AP018923.1\|BBG10237.1\|870146_870341_+\|CsbD-like-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
AP018923.1\|BBG10227.1\|860854_861637_-\|streptomycin-3''-adenylyltransferase	gnl\|CDD\|184296	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional.	2.99486e-84
AP018923.1\|BBG10231.1\|865311_865575_+\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	6.68581e-31
AP018923.1\|BBG10226.1\|859997_860729_+\|rRNA-adenine-N-6-methyltransferase	gnl\|CDD\|366074	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.	5.43116e-86
AP018923.1\|BBG10233.1\|866694_866991_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
AP018923.1\|BBG10236.1\|868971_869793_+\|lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.6728e-112
AP018923.1\|BBG10235.1\|868258_868954_+\|ABC-transporter,-permease-protein-homolog	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
AP018923.1\|BBG10222.1\|856936_857293_+\|transcriptional-regulator,-Spx/MgsR-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
AP018923.1\|BBG10224.1\|858009_858708_+\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	3.90791e-52
AP018923.1\|BBG10230.1\|864060_865146_-\|transposase-A-for-transposon-Tn554	gnl\|CDD\|271186	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain. This family includes putative Transposase A from transposon Tn554. It belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	4.0175e-100
AP018923.1\|BBG10240.1\|872611_873919_+\|ABC-transporter-associated-protein	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	9.26601e-136

>AP018923.1|BBG10231.1|865311_865575_+|hypothetical-protein
MEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>AP018923.1|BBG10230.1|864060_865146_-|transposase-A-for-transposon-Tn554
MKVQRIEVENKPYPLYLLLDKEYQLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVGWLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFLHHVNKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDACHTKRDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKELMSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLERKEHKK
>AP018923.1|BBG10229.1|862171_864064_-|transposase-B-for-transposon-Tn554
MNASSKRKIISQSEISKKIAVMNEEMQGFWANNSWDIRKCPHPSAIELSKNPALRNRWVRFERVKNLWLRTELKYFYFYHLNNGIWNAKTVWIRKGTVINKMLDFLDLKYPSITSITEVPIEKAMTEYRTYLTKRGVRITTTNYKITANQEKTPVKANSYYVTNLKQFMEFYENFYFDGEEWDKDVWDRRNLPLPDDKVNPTQYEYTINFKGFRNTYFKQLVKRYCKLRLNVDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILEGLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDEFVLEQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKFQEKLVTNNGDVLDLDEDNEVDDVELQWFKKNINAQVLPNGYCRLPVVAGGCPHANACLDCTHFCTSKQFLPQHEEQLERTEELLAIAKDKQWQRQVETNSRVKERLEQIIGSLTG
>AP018923.1|BBG10228.1|861787_862165_-|transposase-C-for-transposon-Tn554
MDKQVRNTTEIVRLAKQKSKKTREKVDKAISKFSIEGKVINFNSIAKEANVSKSWLYKEHDIRQRIESLRERQITANVVSKPKKSSRSEEILIKTLKRRVMELEKENKKLQNQIQKLYGDLYNKE
>AP018923.1|BBG10227.1|860854_861637_-|streptomycin-3''-adenylyltransferase
MSNLINGKIPNQAIQTLKIVKDLFGSSIVGVYLFGSAVNGGLRINSDVDVLVVVNHSLPQLTRKKLTERLMTISGKIGNTDSVRPLEVTVINRSEVVPWQYPPKREFIYGEWLRGEFENGQIQEPSYDPDLAIVLAQARKNSISLFGPDSSSILVSVPLTDIRRAIKDSLPELIEGIKGDERNVILTLARMWQTVTTGEITSKDVAAEWAIPLLPKEHVTLLDIARKGYRGECDDKWEGLYSKVKALVKYMKNSIETSLN
>AP018923.1|BBG10226.1|859997_860729_+|rRNA-adenine-N-6-methyltransferase
MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH
>AP018923.1|BBG10225.1|858826_859489_-|hypothetical-protein
MNTIESQFDKVAEDYDFVNELLNDYSFFVSNMSPKKGRALDIGCGSGLLVEKLASYYDEVVGIDISNQMLDLAKSKRQLTNTVYLNMNAEQLNFNEKFDFIVSRTTFHHLDDIASVIQQMKELLNEEGRIVILDNVSEVETPPTYVYKLGAIQEFLPHCFKFGIKNAIRIYNHNTSKSWLEHLASDKYLSEQNYYDLYEKLLPGCQFHKMGWAMGVVWTK
>AP018923.1|BBG10224.1|858009_858708_+|hypothetical-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMVLKEMKEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDNLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQAYLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALHLIKSKLQKNHLNQYFHFEYMYLKWKVLISKIVKPVS
>AP018923.1|BBG10223.1|857450_857831_+|glycine-cleavage-system-protein-H
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE
>AP018923.1|BBG10222.1|856936_857293_+|transcriptional-regulator,-Spx/MgsR-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>AP018923.1|BBG10232.1|866315_866702_+|toprim-domain-containing-protein
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>AP018923.1|BBG10233.1|866694_866991_+|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>AP018923.1|BBG10234.1|867240_868266_+|ABC-transporter-family-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>AP018923.1|BBG10235.1|868258_868954_+|ABC-transporter,-permease-protein-homolog
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>AP018923.1|BBG10236.1|868971_869793_+|lipoprotein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMALYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>AP018923.1|BBG10237.1|870146_870341_+|CsbD-like-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>AP018923.1|BBG10238.1|870573_871425_-|hypothetical-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>AP018923.1|BBG10239.1|871752_872514_+|ABC-transporter-ATP-binding-protein-homologue
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>AP018923.1|BBG10240.1|872611_873919_+|ABC-transporter-associated-protein
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVIGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>AP018923.1|BBG10241.1|874033_875275_+|selenocysteine-lyase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFSYEF

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Crispr_ID: AP018923_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_4

1048356-1048448

Orphan

Consensus_repeat	Method
AAAAGCCCCTAACAACTAAAAGTTGTAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018923_4

>merge|AP018923|4|1048356-1048448|CRISPRCasFinder
AAAAGCCCCTAACAACTAAAAGTTGTAAGGAAGAAGAGGGACACATGCGCCGAGCACATGCATAAAATCCCCTAACAACTAAAAGTTGTAAGG

>AP018923|4|4|1048356-1048448|CRISPRCasFinder
AAAAGCCCCTAACAACTAAAAGTTGTAAGG	AAGAAGAGGGACACATGCGCCGAGCACATGCAT
AAAATCCCCTAACAACTAAAAGTTGTAAGG

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG10411.1\|1057550_1058213_+\|putative-pottasium-uptake-protein-KtrA	unknown	unknown	gnl\|CDD\|223643
AP018923.1\|BBG10402.1\|1048457_1048592_-\|predicted-protein	unknown	unknown	unknown
AP018923.1\|BBG10394.1\|1038983_1040468_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
AP018923.1\|BBG10404.1\|1050463_1051636_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224017
AP018923.1\|BBG10410.1\|1056398_1057418_+\|cytochrome-D-ubiquinol-oxidase-subunit-II-homolog	unknown	unknown	gnl\|CDD\|224213
AP018923.1\|BBG10393.1\|1036815_1039005_+\|phosphoribosylformylglycinamidine-synthase-2	unknown	unknown	gnl\|CDD\|234921
AP018923.1\|BBG10407.1\|1052654_1054373_+\|phosphoenolpyruvate-protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
AP018923.1\|BBG10405.1\|1051689_1052232_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368297
AP018923.1\|BBG10398.1\|1043572_1044820_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|237507
AP018923.1\|BBG10397.1\|1042072_1043551_+\|bifunctional-purine-biosynthesis-protein-PurH	unknown	unknown	gnl\|CDD\|234854
AP018923.1\|BBG10408.1\|1054609_1054843_-\|glutaredoxin	unknown	unknown	gnl\|CDD\|239274
AP018923.1\|BBG10395.1\|1040460_1041489_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
AP018923.1\|BBG10401.1\|1047298_1047874_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227065
AP018923.1\|BBG10400.1\|1045883_1047284_-\|putative-cation-ABC-transporter	unknown	unknown	gnl\|CDD\|213192
AP018923.1\|BBG10406.1\|1052385_1052652_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
AP018923.1\|BBG10396.1\|1041491_1042058_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
AP018923.1\|BBG10409.1\|1055040_1056402_+\|cytochrome-D-ubiquinol-oxidase-subunit-I-homolog	unknown	unknown	gnl\|CDD\|376587
AP018923.1\|BBG10399.1\|1045084_1045891_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223692
AP018923.1\|BBG10392.1\|1036151_1036823_+\|phosphoribosylformylglycinamidine-synthase-I-PurQ	unknown	unknown	gnl\|CDD\|235140
AP018923.1\|BBG10403.1\|1048743_1050039_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG10394.1\|1038983_1040468_+\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
AP018923.1\|BBG10404.1\|1050463_1051636_+\|hypothetical-protein	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	2.1836e-146
AP018923.1\|BBG10410.1\|1056398_1057418_+\|cytochrome-D-ubiquinol-oxidase-subunit-II-homolog	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	1.67944e-76
AP018923.1\|BBG10393.1\|1036815_1039005_+\|phosphoribosylformylglycinamidine-synthase-2	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
AP018923.1\|BBG10407.1\|1052654_1054373_+\|phosphoenolpyruvate-protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
AP018923.1\|BBG10405.1\|1051689_1052232_+\|hypothetical-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	0.00788998
AP018923.1\|BBG10398.1\|1043572_1044820_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|237507	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional.	0
AP018923.1\|BBG10397.1\|1042072_1043551_+\|bifunctional-purine-biosynthesis-protein-PurH	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
AP018923.1\|BBG10408.1\|1054609_1054843_-\|glutaredoxin	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	1.21197e-16
AP018923.1\|BBG10395.1\|1040460_1041489_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
AP018923.1\|BBG10401.1\|1047298_1047874_-\|hypothetical-protein	gnl\|CDD\|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	4.34592e-70
AP018923.1\|BBG10400.1\|1045883_1047284_-\|putative-cation-ABC-transporter	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.87437e-64
AP018923.1\|BBG10406.1\|1052385_1052652_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	2.44795e-51
AP018923.1\|BBG10396.1\|1041491_1042058_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	2.03517e-91
AP018923.1\|BBG10409.1\|1055040_1056402_+\|cytochrome-D-ubiquinol-oxidase-subunit-I-homolog	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.48829e-165
AP018923.1\|BBG10399.1\|1045084_1045891_-\|hypothetical-protein	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	7.19598e-29
AP018923.1\|BBG10392.1\|1036151_1036823_+\|phosphoribosylformylglycinamidine-synthase-I-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	1.77638e-140
AP018923.1\|BBG10411.1\|1057550_1058213_+\|putative-pottasium-uptake-protein-KtrA	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	4.35421e-66

>AP018923.1|BBG10401.1|1047298_1047874_-|hypothetical-protein
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYDNL
>AP018923.1|BBG10400.1|1045883_1047284_-|putative-cation-ABC-transporter
MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELPMKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQVPREDMDALIINALNMVNLNVTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQTVVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPSRVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQLIKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDETIQLLKLLDLQNVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIKLFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
>AP018923.1|BBG10399.1|1045084_1045891_-|hypothetical-protein
MYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRRSLKMRYQMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDIIFIIVLIAIITLAYYCSITLPITGIDDVRLGRVG
>AP018923.1|BBG10398.1|1043572_1044820_+|phosphoribosylamine--glycine-ligase
MNVLVIGAGGREHALAYKLNQSNLVKQVFAIPGNEAMTPIAEVHTEISESDHQAILDFAKRQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIAAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKNGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDLNENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQIQSDHLFYRHDIANKALQLK
>AP018923.1|BBG10397.1|1042072_1043551_+|bifunctional-purine-biosynthesis-protein-PurH
MKKAILSVSNKTGIVEFAKALTQLNYELYSTGGTKRILDEANVPVRSVSDLTHFPEIMDGRVKTLHPAVHGGILADRNKPQHLNELSEQHIDLIDMVVVNLYPFQQTVANPDVTMDEAIENIDIGGPTMLRAAAKNYKHVTTIVHPADYQEVLTRLRNDSLDESYRQSLMIKVFEHTAEYDEAIVRFFKGDKETLRYGENPQQSAYFVRTSNAKHTIAGAKQLHGKQLSYNNIKDADATLALVKKFDTPATVAVKHMNPCGVGIGDTIEQAFQHAYEADSQSIFGGIVALNRAVTPELAEQLHSIFLEVIIAPKFTDEALDILKQKKNVRLLEIDMTIDSNEEEFVSVSGGYLVQDKDNYVVPKEEMKVVTEVAPTDEQWEAMLLGWKVVPSVKSNAIILSNNKQTVGIGAGQMNRVGAAKIALERAIEINDHVALVSDGFFPMGDTVELAAQHGIKAIIQPGGSIKDQDSIDMANKHGIAMVVTGTRHFKH
>AP018923.1|BBG10396.1|1041491_1042058_+|phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVSLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDCGMDTGEIIEQRQCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
>AP018923.1|BBG10395.1|1040460_1041489_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDSSEVKEGQVVIGLASSGIHSNGYSLVRKLINESGIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDASRALKILAEQNVEAYQIGHIMKNESTAIELLGV
>AP018923.1|BBG10394.1|1038983_1040468_+|amidophosphoribosyltransferase
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>AP018923.1|BBG10393.1|1036815_1039005_+|phosphoribosylformylglycinamidine-synthase-2
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGDHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKDYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGLLSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>AP018923.1|BBG10392.1|1036151_1036823_+|phosphoribosylformylglycinamidine-synthase-I-PurQ
MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYRETSLSGFDGVLIPGGFSFGDYLRSGAMASVAPIISEVKRLAAEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCTDEIYQQLKANNQIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSWREQHV
>AP018923.1|BBG10402.1|1048457_1048592_-|predicted-protein
MSNENQNKKAAEKAKEVEEKLKDKKEEKTEDINQTKQDIQDTLN
>AP018923.1|BBG10403.1|1048743_1050039_+|hypothetical-protein
MSFLRKHAEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKVDTHVHNVWEFLNAFFSEIIKVMSRFIGNFPIVSAIVIIIFGILVMLIGHTLLRTIKYDYDISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHFMWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRRALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAKRDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFVSGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLTEFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP
>AP018923.1|BBG10404.1|1050463_1051636_+|hypothetical-protein
MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEGDIFQIVTDKSQYVATAYVGRQHKGLGWVLTYDKAQEINTAFFVKLFNTALAERDYYFNIDGTNAFRLFNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDSEYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRDQYAKERHVLNLFSYTGAFSVIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNASVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH
>AP018923.1|BBG10405.1|1051689_1052232_+|hypothetical-protein
MGFKNNLTSNLTNKIGNSVFKIENVDGKGAMPTTIQELRERRQRAEAIVKRKSLMSSTMSVVPIPGLDFGVDLKLMKDIIEDVNKIYGLDHKQVNSVGDDVKERIMSAAAIQGSQFIGKRISSAFLKIVIRDVAKRTAAKQTKWFPVVGQAVSASISYYFMNKIGKDHIQKCENVIKNVM
>AP018923.1|BBG10406.1|1052385_1052652_+|phosphocarrier-protein-HPr
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
>AP018923.1|BBG10407.1|1052654_1054373_+|phosphoenolpyruvate-protein-phosphotransferase
MSKLIKGIAASDGVAIAKAYLLVEPDLTFDKNEKVTDVEGEVAKFNSAIEASKVELTKIRNNAEVQLGADKAAIFDAHLLVLDDPELIQPIQDKIKNENANAATALTDVTTQFVTIFESMDNEYMKERAADIRDVSKRVLSHILGVELPNPSMIDESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSHSAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADTVTVDGVHAELAANIGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLEAMDGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLCLAQQDIFRPQLRALLRASVYGKLNIMFPMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLIQYTLAADRMSERVSYLYQPYNPSILRLVKQVIEASHKEGKWTGMCGEMAGDETAIPLLLGLGLDEFSMSATSILKARRQINGLSKNEMTELANRAVDCATQEEVIELVNNYVK
>AP018923.1|BBG10408.1|1054609_1054843_-|glutaredoxin
MSEIIVYTQNDCPPCTFVKNYLNEHQIDFEERNINNQQYRNEMIDFDAFSTPFILLNGNPMYHVDLDEINKVLNIQD
>AP018923.1|BBG10409.1|1055040_1056402_+|cytochrome-D-ubiquinol-oxidase-subunit-I-homolog
MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
>AP018923.1|BBG10410.1|1056398_1057418_+|cytochrome-D-ubiquinol-oxidase-subunit-II-homolog
MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFAISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
>AP018923.1|BBG10411.1|1057550_1058213_+|putative-pottasium-uptake-protein-KtrA
MGKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAGQSIIDLDIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIATR

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Crispr_ID: AP018923_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_5

1249565-1249657

Unclear

Consensus_repeat	Method
TAAGAAACACTAATCAATAAATTGATAAG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of AP018923_5

>merge|AP018923|5|1249565-1249657|CRISPRCasFinder
TAAGAAACACTAATCAATAAATTGATAAGAAGATTAGAGGAACGCTTGAGCTAAAGCTCATGCATAAGAAACACTAATCAATAAATTGATAAG

>AP018923|5|5|1249565-1249657|CRISPRCasFinder
TAAGAAACACTAATCAATAAATTGATAAG	AAGATTAGAGGAACGCTTGAGCTAAAGCTCATGCA
TAAGAAACACTAATCAATAAATTGATAAG

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG10618.1\|1247724_1248651_+\|malonyl-CoA-acyl-carrier-protein-transacylase	unknown	unknown	gnl\|CDD\|223408
AP018923.1\|BBG10612.1\|1241049_1241238_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
AP018923.1\|BBG10623.1\|1254540_1255791_+\|signal-recognition-particle	unknown	unknown	gnl\|CDD\|236686
AP018923.1\|BBG10624.1\|1255777_1256110_+\|helix-turn-helix-protein,-YlxM-/-p13-like-family-protein	unknown	unknown	gnl\|CDD\|234647
AP018923.1\|BBG10617.1\|1246745_1247732_+\|phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|235414
AP018923.1\|BBG10628.1\|1258903_1259641_+\|tRNA-(guanine-N(1)-)-methyltransferase	unknown	unknown	gnl\|CDD\|234581
AP018923.1\|BBG10611.1\|1240027_1240669_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224480
AP018923.1\|BBG10616.1\|1246183_1246741_+\|transcription-factor-FapR	unknown	unknown	gnl\|CDD\|179847
AP018923.1\|BBG10610.1\|1239376_1240021_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
AP018923.1\|BBG10629.1\|1259743_1260094_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
AP018923.1\|BBG10625.1\|1256135_1257503_+\|signal-recognition-particle-homolog	unknown	unknown	gnl\|CDD\|236780
AP018923.1\|BBG10621.1\|1250096_1250828_+\|RNase-III	unknown	unknown	gnl\|CDD\|234633
AP018923.1\|BBG10627.1\|1258400_1258904_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
AP018923.1\|BBG10613.1\|1241680_1242055_+\|alkaline-shock-protein	unknown	unknown	gnl\|CDD\|224221
AP018923.1\|BBG10620.1\|1249747_1249981_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
AP018923.1\|BBG10615.1\|1243905_1245966_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
AP018923.1\|BBG10614.1\|1242069_1243716_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224378
AP018923.1\|BBG10626.1\|1257937_1258213_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
AP018923.1\|BBG10619.1\|1248643_1249378_+\|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG	unknown	unknown	gnl\|CDD\|235500
AP018923.1\|BBG10622.1\|1250974_1254541_+\|chromosome-partition-protein-Smc	unknown	unknown	gnl\|CDD\|224117

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG10618.1\|1247724_1248651_+\|malonyl-CoA-acyl-carrier-protein-transacylase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	2.53926e-134
AP018923.1\|BBG10612.1\|1241049_1241238_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
AP018923.1\|BBG10623.1\|1254540_1255791_+\|signal-recognition-particle	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
AP018923.1\|BBG10624.1\|1255777_1256110_+\|helix-turn-helix-protein,-YlxM-/-p13-like-family-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	5.84113e-47
AP018923.1\|BBG10617.1\|1246745_1247732_+\|phosphate-acyltransferase	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	6.1953e-178
AP018923.1\|BBG10628.1\|1258903_1259641_+\|tRNA-(guanine-N(1)-)-methyltransferase	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.98496e-164
AP018923.1\|BBG10611.1\|1240027_1240669_+\|hypothetical-protein	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	1.16343e-81
AP018923.1\|BBG10616.1\|1246183_1246741_+\|transcription-factor-FapR	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	2.33658e-99
AP018923.1\|BBG10610.1\|1239376_1240021_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	1.52718e-114
AP018923.1\|BBG10629.1\|1259743_1260094_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70
AP018923.1\|BBG10625.1\|1256135_1257503_+\|signal-recognition-particle-homolog	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
AP018923.1\|BBG10621.1\|1250096_1250828_+\|RNase-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	4.78039e-115
AP018923.1\|BBG10627.1\|1258400_1258904_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.02289e-68
AP018923.1\|BBG10613.1\|1241680_1242055_+\|alkaline-shock-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	4.1554e-37
AP018923.1\|BBG10620.1\|1249747_1249981_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.23888e-31
AP018923.1\|BBG10615.1\|1243905_1245966_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
AP018923.1\|BBG10614.1\|1242069_1243716_+\|hypothetical-protein	gnl\|CDD\|224378	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only].	0
AP018923.1\|BBG10626.1\|1257937_1258213_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
AP018923.1\|BBG10619.1\|1248643_1249378_+\|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	3.68137e-140
AP018923.1\|BBG10622.1\|1250974_1254541_+\|chromosome-partition-protein-Smc	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0

>AP018923.1|BBG10619.1|1248643_1249378_+|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG
MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>AP018923.1|BBG10618.1|1247724_1248651_+|malonyl-CoA-acyl-carrier-protein-transacylase
MSKTAIIFPGQGAQKVGMAQDLFNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGETENTQPALLTHSSALLAALKNLNPDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAFPTGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWNEND
>AP018923.1|BBG10617.1|1246745_1247732_+|phosphate-acyltransferase
MVKLAIDMMGGDNAPDIVLEAVQKAVEDFKDLEIILFGDEKKYNLNHERIEFRHCSEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLDVGANADAKPEHLLQYAQLGDIYAQKIRGIDNPKISLLNIGTEPAKGNSLTKKSYELLNQDHSLNFVGNIEAKTLMDGDTDVVVTDGYTGNMVLKNLEGTAKSIGKMLKDTIMSSTKNKLAGAILKKDLAEFAKKMDYSEYGGSVLLGLEGTVVKAHGSSNAKAFYSAIRQAKIAGEQNIVQTMKETVGESNE
>AP018923.1|BBG10616.1|1246183_1246741_+|transcription-factor-FapR
MKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKGNFKMFYDKRG
>AP018923.1|BBG10615.1|1243905_1245966_+|ATP-dependent-DNA-helicase-RecG
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGRNNSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYGLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD
>AP018923.1|BBG10614.1|1242069_1243716_+|hypothetical-protein
MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAQAAIEKANNTEDCIELMEYIIVKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKVEAKVAKIDKDEFVHDEHDFHGVINTEDIIYGYCTEMMVRFGKNKKAFDEQEFRQDMSQFGDSLLVINDEEIVKVHVHTEYPGKVFNYGQQYGELIKLKVENMREQHREVIRKEQHTAKPKMETVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNKNILMASEQAASIVDAEAVVIPTKSIPQGISALFQYDVDATLEENKAQMADSVNNVKSGSLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLNEMLAEDSEILTVIIGQDAEQAVTDNMINWIEEQYPDVEVEVHEGGQPIYQYFFSVE
>AP018923.1|BBG10613.1|1241680_1242055_+|alkaline-shock-protein
MTLEISNDYGKIDISNEVIASVVGGKAVECYGIVGMASRQQVRDGIAEILGHENYAKGIKVTENNGVVDIDMYIIVSYGVKISEVANNVQSTVKYTLEKSLNVSVNSINIYVQGVRVNNTGKKA
>AP018923.1|BBG10612.1|1241049_1241238_-|50S-ribosomal-protein-L28
MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>AP018923.1|BBG10611.1|1240027_1240669_+|hypothetical-protein
MHINLLCSDRHLPQDIWAKSNEGKWGGVDRGALILLKHQIIPFFSVGDFDSVSKEERQLLTEQLQIKPVQAEKADTDLALAVDKAVALGFDSITIYGATGGRLDHFFGAIQLLLKKAYYKHDVHIEVIDQQNKIELLPKGQHTVEKDKSYPYISFIPMTDDVELSLAGFKYNLARQMLNIGSTLTISNEIESLQAKVTVHDGLILQIRSTDLN
>AP018923.1|BBG10610.1|1239376_1240021_+|ribulose-phosphate-3-epimerase
MTKLYPSLLSVDFLDLQHELKRLEEAGVDGVHFDVMDGQFVPNISIGLPILDAVRKGTTLPIDVHLMIENPEKYIASFAEHGADMISIHVESTPHIHRAIQMIKHLDKKAGVVINPGTPISQIEPILDIVDYVLVMTVNPGFGGQSFIDQCVEKIAGLNAIKMERQLNFDIEVDGGVNTDTAKVCVENGATMLVTGSFFFKQEDYKKVTQALKG
>AP018923.1|BBG10620.1|1249747_1249981_+|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK
>AP018923.1|BBG10621.1|1250096_1250828_+|RNase-III
MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQIK
>AP018923.1|BBG10622.1|1250974_1254541_+|chromosome-partition-protein-Smc
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKTLSHQMKHSDIVVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLEERKKNQSETNARYEEEQENLMELLENISNEISGAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEAKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELSAVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHILKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIQSRVVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKASLKRLEDEIERYTKLSKEGKESVTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQNQQTKHQLKDVKEKIALFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEAKLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAVFKQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>AP018923.1|BBG10623.1|1254540_1255791_+|signal-recognition-particle
MSFFKRLKDKFATNKENEEVKSLTEEQGQDKLEDTHSESSTQDANDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGSK
>AP018923.1|BBG10624.1|1255777_1256110_+|helix-turn-helix-protein,-YlxM-/-p13-like-family-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKQHLSNPEQIQRYIQQLEDLE
>AP018923.1|BBG10625.1|1256135_1257503_+|signal-recognition-particle-homolog
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>AP018923.1|BBG10626.1|1257937_1258213_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>AP018923.1|BBG10627.1|1258400_1258904_+|ribosome-maturation-factor-RimM
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
>AP018923.1|BBG10628.1|1258903_1259641_+|tRNA-(guanine-N(1)-)-methyltransferase
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>AP018923.1|BBG10629.1|1259743_1260094_+|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR

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Crispr_ID: AP018923_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_6

1733938-1734023

Orphan

Consensus_repeat	Method
TCTGTGTTGGGGCCCCATCCCCAACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018923_6

>merge|AP018923|6|1733938-1734023|CRISPRCasFinder
TCTGTGTTGGGGCCCCATCCCCAACTTGCACATTATTGAAATCTGACTTTTGGTCAGCTTCTGTGTTGGGGCCCCGTCCCCAACTT

>AP018923|6|6|1733938-1734023|CRISPRCasFinder
TCTGTGTTGGGGCCCCATCCCCAACTT	GCACATTATTGAAATCTGACTTTTGGTCAGCT
TCTGTGTTGGGGCCCCGTCCCCAACTT

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG11085.1\|1741672_1743439_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
AP018923.1\|BBG11078.1\|1735324_1736467_-\|iron-sulfur-cofactor-synthesis-protein-homolog	unknown	unknown	gnl\|CDD\|224029
AP018923.1\|BBG11083.1\|1739003_1740278_+\|putative-ATPase	unknown	unknown	gnl\|CDD\|237355
AP018923.1\|BBG11071.1\|1726426_1726735_-\|YrzB-like-protein	unknown	unknown	gnl\|CDD\|184235
AP018923.1\|BBG11076.1\|1732956_1733625_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
AP018923.1\|BBG11081.1\|1738214_1738397_-\|CsbD-like-family-protein	unknown	unknown	gnl\|CDD\|225777
AP018923.1\|BBG11077.1\|1734205_1735324_-\|thiouridylase	unknown	unknown	gnl\|CDD\|234664
AP018923.1\|BBG11072.1\|1726749_1727178_-\|Holliday-junction-resolvase-like-protein	unknown	unknown	gnl\|CDD\|223886
AP018923.1\|BBG11075.1\|1730477_1732955_-\|putative-deoxyribonuclease	unknown	unknown	gnl\|CDD\|273632
AP018923.1\|BBG11068.1\|1723297_1724566_-\|protease	unknown	unknown	gnl\|CDD\|223896
AP018923.1\|BBG11086.1\|1743454_1744717_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
AP018923.1\|BBG11067.1\|1722674_1723298_-\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
AP018923.1\|BBG11070.1\|1725503_1726142_-\|putative-caffeoyl-CoA-O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
AP018923.1\|BBG11079.1\|1736778_1737792_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274646
AP018923.1\|BBG11069.1\|1724577_1725501_-\|protease	unknown	unknown	gnl\|CDD\|223896
AP018923.1\|BBG11084.1\|1740438_1741212_-\|putative-molybdopterin-biosynthesis-MoeB-protein	unknown	unknown	gnl\|CDD\|224100
AP018923.1\|BBG11074.1\|1727504_1730135_-\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
AP018923.1\|BBG11080.1\|1738028_1738175_-\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG11082.1\|1738496_1738919_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
AP018923.1\|BBG11073.1\|1727181_1727442_-\|putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|180108

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG11085.1\|1741672_1743439_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
AP018923.1\|BBG11078.1\|1735324_1736467_-\|iron-sulfur-cofactor-synthesis-protein-homolog	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	0
AP018923.1\|BBG11083.1\|1739003_1740278_+\|putative-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
AP018923.1\|BBG11071.1\|1726426_1726735_-\|YrzB-like-protein	gnl\|CDD\|184235	PRK13678, PRK13678, hypothetical protein; Provisional.	9.25085e-27
AP018923.1\|BBG11076.1\|1732956_1733625_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.22121e-16
AP018923.1\|BBG11081.1\|1738214_1738397_-\|CsbD-like-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	4.22501e-07
AP018923.1\|BBG11077.1\|1734205_1735324_-\|thiouridylase	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
AP018923.1\|BBG11072.1\|1726749_1727178_-\|Holliday-junction-resolvase-like-protein	gnl\|CDD\|223886	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair].	3.40149e-56
AP018923.1\|BBG11075.1\|1730477_1732955_-\|putative-deoxyribonuclease	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
AP018923.1\|BBG11068.1\|1723297_1724566_-\|protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	5.98972e-149
AP018923.1\|BBG11086.1\|1743454_1744717_-\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
AP018923.1\|BBG11067.1\|1722674_1723298_-\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	5.13835e-138
AP018923.1\|BBG11070.1\|1725503_1726142_-\|putative-caffeoyl-CoA-O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	1.23148e-73
AP018923.1\|BBG11079.1\|1736778_1737792_+\|hypothetical-protein	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	1.49102e-173
AP018923.1\|BBG11069.1\|1724577_1725501_-\|protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.87045e-104
AP018923.1\|BBG11084.1\|1740438_1741212_-\|putative-molybdopterin-biosynthesis-MoeB-protein	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	1.59061e-126
AP018923.1\|BBG11074.1\|1727504_1730135_-\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
AP018923.1\|BBG11082.1\|1738496_1738919_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	5.58388e-46
AP018923.1\|BBG11073.1\|1727181_1727442_-\|putative-cytosolic-protein	gnl\|CDD\|180108	PRK05473, IreB-like, IreB family regulatory phosphoprotein. IreB (EF1202) was characterized in Enterococcus faecalis as a small protein, well-conserved in the Firmicutes. It belongs to a system that includes the Ser/Thr protein kinase IreK, and phosphatase IreP, undergoes phosphorylation on threonine residues, and is involved in regulating cephalosporin resistance. This family was previously named DUF965 by Pfam model pfam06135.	3.05024e-47

>AP018923.1|BBG11076.1|1732956_1733625_-|hypothetical-protein
MIDQQTIYQYIQNGKIEEALQALFGNIEENPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFYNLANVYYNQQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
>AP018923.1|BBG11075.1|1730477_1732955_-|putative-deoxyribonuclease
MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAETFEKEMPQTKEAIISYLSSDLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIMIRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECIKQGHTYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQYLNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIEQSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLAAPTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLLGDPEAFDIGLKTNGQARLTQLCTLLKNYFNSEDEEMLENTATNDTGASQTTIDDQVEAPMSSNDSGEVTSDSTKTDINVLTEATMFKIDPMINMGEITPYDFIER
>AP018923.1|BBG11074.1|1727504_1730135_-|alanine--tRNA-ligase
MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTTFESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAPFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQLEQRDKEITSLKMGNIENQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
>AP018923.1|BBG11073.1|1727181_1727442_-|putative-cytosolic-protein
MENFDKTMKFDYEELPTQDVRDVLNNVYRTLDERGYNAVNQIVGYLLSGDPAYIPRQNEARNQIRHIDRDVIMEELVSYYLKEQNK
>AP018923.1|BBG11072.1|1726749_1727178_-|Holliday-junction-resolvase-like-protein
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH
>AP018923.1|BBG11071.1|1726426_1726735_-|YrzB-like-protein
MTEHNHDSQLEINNEEELLTLFDEEGNEVLYRKVLEFYHPEFKKEYVILAEEGAQSDEDNMIELVPMINEPDESGDGGKLVPIETDEEWDMIEEVVNTEMEE
>AP018923.1|BBG11070.1|1725503_1726142_-|putative-caffeoyl-CoA-O-methyltransferase
MDDLNKKYLIDLHQHQNSSIEVLREFAEVNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE
>AP018923.1|BBG11069.1|1724577_1725501_-|protease
MTELLVTPKSLSHMETLIDLGADAFVIGEQKFGLRLPGEFNRQQMTEAVALAHKNDKKVYAAVNGLFHNYHLDAVEDYINFLHEIRVDRIIFGDPAVVMYVKAQENPIPLHWNAETLVTNHFQCNYWGKRGASRAVLARELNLDEIINIKENSNVEIEVQVQGMTCMFQSKRMLLGNYYTFQDRQMKIERRNDEQSLLLYDEERQNNYPVYEDYNGTHIMSPNDICLIEELAPFFEAGIDSFKIDGILQTEEYINVVTEQYRQAIDLYNEDPEIYEDEKFMLMDPIEEIQPDHRPFDEGFLYKQTVY
>AP018923.1|BBG11068.1|1723297_1724566_-|protease
MKTIEEIKSTPKTVMKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTMEEIAEGVEFANRYGAKIYVTTNIIAHDENIEGLESYLRNLEKTGATGIIVADPLIIETCKEVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGAMEMREMKEKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYELLEVDDNGELDVFYNQGEVTPFAMSPKDLKLIESIPQMMDIGVDSLKIEGRMKSIHYIATVVSVYRKVIDAYAADPDNFKINPEWLIELDKCANRDTAPAFFEGTPGYEEQMFGQQQSKKSPFDFCGLVLDYNEDTKIATIQQRNNFKPGQEIEFFGPEIETFTQVVEAIYDEEGNSLDAARHPLQIVQIKVDRPIYPNNMMRKEIG
>AP018923.1|BBG11067.1|1722674_1723298_-|uridine-kinase
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ
>AP018923.1|BBG11077.1|1734205_1735324_-|thiouridylase
MSNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVIEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKIEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGKHSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDVCLGGATIDDVFKNEGQLNYVV
>AP018923.1|BBG11078.1|1735324_1736467_-|iron-sulfur-cofactor-synthesis-protein-homolog
MEIYADYAATTPVKPEVVDAMMMIYNSHYGNPSSIHAKGRDARKYLDESRRQIAQLLGADTHEIIFTSGATESNNTAIKGIVKANEQLGNHIITSKIEHHSVLHVFEQLEREGFDVTYLDVDDTGAIDLDQLEETITDKTILVSIMFVNNEVGTVQQIYDIQDIIAETNAYFHVDAVQAIGHLDVKFDEFEIDAMSITAHKFGGPKGVGALLVKDHVTLDYPQLGGEQELKRRAGTENLAQIVGMAKALQLAEKNRDDNNIHLMNLKEQFLVKLQERAIPFELNGSMTDATGHIVNLYFPFVEVETMLTLLDMAQIYVSSGSACTAGSTQPSHVLDAMFEDEERSNHSIRFSFNELTTENEINAIVAEIHKIYFKFKEES
>AP018923.1|BBG11079.1|1736778_1737792_+|hypothetical-protein
MAIKYSALNLVPIREGEDERTAINDMVKLAQHLDELSYERYWIAEHHNAPNLVSSATALLIQHTLEHTKHIRVGSGGIMLPNHAPLIVAEQFGTMATLFPNRVDLGLGRAPGTDMMTASALRRDQHDGVYKFPEEVSLLQQYFGPAHQQAYVRAYPAVGKNVPLYILGSSTDSAHLAARKGLPYVFAGHFAPQQMKEAIEIYKTLFEPSDVLDEPYVIVCLNTIVAENDDEAQYLASSMAQVMVSITRGRMQPVQPPTHELQNILTPREYAMAMERQKISLIGSENTVQQKIQDFMETYGEVNEIMAISYIYDKDMQLDSYRRFKNVINQINEKNTL
>AP018923.1|BBG11080.1|1738028_1738175_-|hypothetical-protein
MSFMDKAKDAVEKFKNSDNEQVKNVKDKINEYTGSNNEEKKENEDKEK
>AP018923.1|BBG11081.1|1738214_1738397_-|CsbD-like-family-protein
MADESKFDQFKGNVKETVGNVTDNKELEKEGQQDKATGKAKEVVENAKNKITDAIDKLKK
>AP018923.1|BBG11082.1|1738496_1738919_-|Rrf2-family-transcriptional-regulator
MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPPAQKQLWIRMRDAVRDVLDNTTLKYLAEYVDTSEDLDGYMFYI
>AP018923.1|BBG11083.1|1739003_1740278_+|putative-ATPase
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLLKQRP
>AP018923.1|BBG11084.1|1740438_1741212_-|putative-molybdopterin-biosynthesis-MoeB-protein
MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDITNVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVDASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKKLGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVVNDVLKDIPVRRIKDKGQ
>AP018923.1|BBG11085.1|1741672_1743439_-|aspartate--tRNA-ligase
MSKRTTYCGLVTEAFLGQEITLKGWVNNRRDLGGLIFVDLRDREGIVQVVFNPAFSEEALKIAETVRSEYVVEVQGTVTKRDPETVNPKIKTGQVEVQVTNIKVINKSETPPFSINEENVNVDENIRLKYRYLDLRRQELAQTFKMRHQITRSIRQYLDDEGFFDIETPVLTKSTPEGARDYLVPSRVHDGEFYALPQSPQLFKQLLMISGFDKYYQIVKCFRDEDLRADRQPEFTQVDIEMSFVDQEDVMQMGEEMLKKVVKEVKGVEINGAFPRMTYKEAMRRYGSDKPDTRFEMELIDVSQLGRDMDFKVFKDTVENDGEIKAIVAKGAAEQYTRKDMDALTEFVNIYGAKGLAWVKVVEDGLTGPIGRFFETENVETLLTLTGAEAGDLVMFVADKPNVVAQSLGALRVKLAKELGLIDETKLNFLWVTDWPLLEYDEDAKRYVAAHHPFTSPKEADIAKLGTAPEEAEANAYDIVLNGYELGGGSIRIHDGELQEKMFEVLGFTKEQAQEQFGFLLDAFKYGAPPHGGIALGLDRLVMLLTNRTNLRDTIAFPKTASATCLLTNAPGEVSDKQLEELSLRIRH
>AP018923.1|BBG11086.1|1743454_1744717_-|histidine--tRNA-ligase
MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK

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Crispr_ID: AP018923_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_7

1826617-1826703

Orphan

Consensus_repeat	Method
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018923_7

>merge|AP018923|7|1826617-1826703|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACCATGCAAGTTGGGGTGGGCCCCAACATAGAA

>AP018923|7|7|1826617-1826703|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	GAATTTCGAAAAGAAATTCTACAGACC
ATGCAAGTTGGGGTGGGCCCCAACATAGAA

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG11163.1\|1834544_1835492_-\|adenine-specific-DNA-methylase	unknown	unknown	gnl\|CDD\|223897
AP018923.1\|BBG11149.1\|1815489_1817247_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
AP018923.1\|BBG11161.1\|1832508_1833009_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366180
AP018923.1\|BBG11153.1\|1820501_1821731_-\|malate-dehydrogenase-homolog	unknown	unknown	gnl\|CDD\|235976
AP018923.1\|BBG11157.1\|1828296_1828710_+\|UspA-domain-containing-protein	unknown	unknown	gnl\|CDD\|366180
AP018923.1\|BBG11151.1\|1818505_1819450_-\|acetyl-coenzyme-A-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
AP018923.1\|BBG11165.1\|1836206_1836977_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182593
AP018923.1\|BBG11160.1\|1831249_1832368_-\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
AP018923.1\|BBG11162.1\|1833254_1834457_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
AP018923.1\|BBG11146.1\|1810994_1812263_-\|isocitrate-dehydrogenase-[NADP]	unknown	unknown	gnl\|CDD\|180792
AP018923.1\|BBG11152.1\|1819449_1820307_-\|acetyl-coenzyme-A-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
AP018923.1\|BBG11156.1\|1826793_1828092_-\|putative-CBS-domain-protein	unknown	unknown	gnl\|CDD\|226594
AP018923.1\|BBG11164.1\|1835614_1836109_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
AP018923.1\|BBG11154.1\|1822180_1825378_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
AP018923.1\|BBG11148.1\|1813780_1815142_+\|D-serine/D-alanine/glycine-transporter	unknown	unknown	gnl\|CDD\|224038
AP018923.1\|BBG11150.1\|1817268_1818237_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
AP018923.1\|BBG11159.1\|1829878_1830934_+\|proline-dipeptidase	unknown	unknown	gnl\|CDD\|223085
AP018923.1\|BBG11147.1\|1812311_1813433_-\|citrate-synthase-II	unknown	unknown	gnl\|CDD\|184468
AP018923.1\|BBG11155.1\|1825398_1826340_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223691
AP018923.1\|BBG11158.1\|1829014_1829704_-\|putative-metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG11163.1\|1834544_1835492_-\|adenine-specific-DNA-methylase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	2.86206e-56
AP018923.1\|BBG11149.1\|1815489_1817247_-\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
AP018923.1\|BBG11161.1\|1832508_1833009_+\|hypothetical-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
AP018923.1\|BBG11153.1\|1820501_1821731_-\|malate-dehydrogenase-homolog	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
AP018923.1\|BBG11157.1\|1828296_1828710_+\|UspA-domain-containing-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.00154e-19
AP018923.1\|BBG11151.1\|1818505_1819450_-\|acetyl-coenzyme-A-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
AP018923.1\|BBG11165.1\|1836206_1836977_-\|hypothetical-protein	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	2.62143e-37
AP018923.1\|BBG11160.1\|1831249_1832368_-\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
AP018923.1\|BBG11162.1\|1833254_1834457_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
AP018923.1\|BBG11146.1\|1810994_1812263_-\|isocitrate-dehydrogenase-[NADP]	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
AP018923.1\|BBG11152.1\|1819449_1820307_-\|acetyl-coenzyme-A-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
AP018923.1\|BBG11156.1\|1826793_1828092_-\|putative-CBS-domain-protein	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
AP018923.1\|BBG11164.1\|1835614_1836109_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	8.69777e-99
AP018923.1\|BBG11154.1\|1822180_1825378_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
AP018923.1\|BBG11148.1\|1813780_1815142_+\|D-serine/D-alanine/glycine-transporter	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
AP018923.1\|BBG11150.1\|1817268_1818237_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
AP018923.1\|BBG11159.1\|1829878_1830934_+\|proline-dipeptidase	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	2.15375e-126
AP018923.1\|BBG11147.1\|1812311_1813433_-\|citrate-synthase-II	gnl\|CDD\|184468	PRK14035, PRK14035, citrate synthase; Provisional.	0
AP018923.1\|BBG11155.1\|1825398_1826340_-\|hypothetical-protein	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.30182e-98
AP018923.1\|BBG11158.1\|1829014_1829704_-\|putative-metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	3.09103e-133

>AP018923.1|BBG11155.1|1825398_1826340_-|hypothetical-protein
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGNEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN
>AP018923.1|BBG11154.1|1822180_1825378_-|DNA-polymerase-III-subunit-alpha
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTVETVVLAKNNDGLKDLYQLSSEIKMNALEHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEINQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVVLSFYDETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI
>AP018923.1|BBG11153.1|1820501_1821731_-|malate-dehydrogenase-homolog
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>AP018923.1|BBG11152.1|1819449_1820307_-|acetyl-coenzyme-A-carboxylase-carboxyltransferase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNNMRQTLSEILKIHQEVTK
>AP018923.1|BBG11151.1|1818505_1819450_-|acetyl-coenzyme-A-carboxylase-carboxyltransferase-subunit-alpha
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE
>AP018923.1|BBG11150.1|1817268_1818237_-|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>AP018923.1|BBG11149.1|1815489_1817247_-|pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>AP018923.1|BBG11148.1|1813780_1815142_+|D-serine/D-alanine/glycine-transporter
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>AP018923.1|BBG11147.1|1812311_1813433_-|citrate-synthase-II
MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEELAHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYERAMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVDAYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAEEKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIGETNRKYIPLEERK
>AP018923.1|BBG11146.1|1810994_1812263_-|isocitrate-dehydrogenase-[NADP]
MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLALSEFGDQVFTWQQYDEIVEKEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKNLK
>AP018923.1|BBG11156.1|1826793_1828092_-|putative-CBS-domain-protein
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRDTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>AP018923.1|BBG11157.1|1828296_1828710_+|UspA-domain-containing-protein
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>AP018923.1|BBG11158.1|1829014_1829704_-|putative-metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKANFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>AP018923.1|BBG11159.1|1829878_1830934_+|proline-dipeptidase
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>AP018923.1|BBG11160.1|1831249_1832368_-|alanine-dehydrogenase
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>AP018923.1|BBG11161.1|1832508_1833009_+|hypothetical-protein
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>AP018923.1|BBG11162.1|1833254_1834457_-|acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLVERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>AP018923.1|BBG11163.1|1834544_1835492_-|adenine-specific-DNA-methylase
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEADIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINALKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSGETKPVEVLLANIPDFKIPSQFQGFMTELNQWMDTNRPKK
>AP018923.1|BBG11164.1|1835614_1836109_-|thiol-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI
>AP018923.1|BBG11165.1|1836206_1836977_-|hypothetical-protein
MDLNLTMIIIIILFGFIVAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLTSTIKFIRSGKVDLYVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLKKDWGNTRTFTQFTFKKAILFAALFILIGFYDGFVGGGTGSFMLFVLLVFGFDFLSAAGNAKVLNFASNIGALVLFMVLGQVDYVIGLIMATSMIAGSYTGAHFAIKQGVGYVKVLFIIITAILILKNAFDYIQQFV

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Crispr_ID: AP018923_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_8

2000843-2000970

Orphan

Consensus_repeat	Method
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018923_8

>merge|AP018923|8|2000843-2000970|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTCATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTAAATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

>AP018923|8|8|2000843-2000970|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	ATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTA
AATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG11301.1\|1993998_1994151_-\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG11303.1\|1994933_1995404_-\|putative-tRNA(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
AP018923.1\|BBG11312.1\|2010536_2010992_-\|putative-bacterioferritin-comigratory-protein	unknown	unknown	gnl\|CDD\|224146
AP018923.1\|BBG11299.1\|1991416_1992802_-\|fumarate-hydratase,-class-II	unknown	unknown	gnl\|CDD\|234779
AP018923.1\|BBG11313.1\|2011072_2012362_+\|glutamate-1-semialdehyde-2,1-aminomutase-2	unknown	unknown	gnl\|CDD\|183493
AP018923.1\|BBG11315.1\|2013940_2015677_-\|putative-multidrug-export-ATP-binding/permease-protein	unknown	unknown	gnl\|CDD\|224055
AP018923.1\|BBG11306.1\|1997401_1998859_-\|polar-amino-acid-ABC-transporter,-inner-membrane-subunit	unknown	unknown	gnl\|CDD\|223836
AP018923.1\|BBG11300.1\|1992997_1993393_-\|membrane-protein	unknown	unknown	unknown
AP018923.1\|BBG11317.1\|2016811_2017849_-\|putative-A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
AP018923.1\|BBG11302.1\|1994175_1994775_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223440
AP018923.1\|BBG11304.1\|1995408_1996536_-\|iron-sulfur-(Fe-S)-cluster-binding-protein	unknown	unknown	gnl\|CDD\|272993
AP018923.1\|BBG11310.1\|2009037_2009484_-\|peroxide-responsive-repressor-PerR	unknown	unknown	gnl\|CDD\|223806
AP018923.1\|BBG11305.1\|1996686_1997415_-\|glutamate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
AP018923.1\|BBG11309.1\|2007192_2007384_-\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG11311.1\|2009580_2010531_-\|putative-D-3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
AP018923.1\|BBG11316.1\|2015967_2016510_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184219
AP018923.1\|BBG11307.1\|1999116_2000178_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226167
AP018923.1\|BBG11314.1\|2012654_2013749_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226614
AP018923.1\|BBG11298.1\|1990134_1990956_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223638
AP018923.1\|BBG11308.1\|2003775_2003937_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG11303.1\|1994933_1995404_-\|putative-tRNA(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.70324e-88
AP018923.1\|BBG11312.1\|2010536_2010992_-\|putative-bacterioferritin-comigratory-protein	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.44283e-68
AP018923.1\|BBG11299.1\|1991416_1992802_-\|fumarate-hydratase,-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
AP018923.1\|BBG11313.1\|2011072_2012362_+\|glutamate-1-semialdehyde-2,1-aminomutase-2	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
AP018923.1\|BBG11315.1\|2013940_2015677_-\|putative-multidrug-export-ATP-binding/permease-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
AP018923.1\|BBG11306.1\|1997401_1998859_-\|polar-amino-acid-ABC-transporter,-inner-membrane-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.14709e-98
AP018923.1\|BBG11302.1\|1994175_1994775_-\|hypothetical-protein	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	1.49007e-10
AP018923.1\|BBG11304.1\|1995408_1996536_-\|iron-sulfur-(Fe-S)-cluster-binding-protein	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	1.6103e-179
AP018923.1\|BBG11310.1\|2009037_2009484_-\|peroxide-responsive-repressor-PerR	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.09298e-56
AP018923.1\|BBG11305.1\|1996686_1997415_-\|glutamate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.22702e-152
AP018923.1\|BBG11317.1\|2016811_2017849_-\|putative-A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	5.5924e-157
AP018923.1\|BBG11311.1\|2009580_2010531_-\|putative-D-3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.07559e-136
AP018923.1\|BBG11316.1\|2015967_2016510_-\|hypothetical-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.4746e-126
AP018923.1\|BBG11307.1\|1999116_2000178_-\|hypothetical-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	2.31644e-122
AP018923.1\|BBG11314.1\|2012654_2013749_+\|hypothetical-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.5476e-86
AP018923.1\|BBG11298.1\|1990134_1990956_+\|hypothetical-protein	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.35529e-78

>AP018923.1|BBG11307.1|1999116_2000178_-|hypothetical-protein
MSNANNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>AP018923.1|BBG11306.1|1997401_1998859_-|polar-amino-acid-ABC-transporter,-inner-membrane-subunit
MKCLIRFILVLGLLISSAMVYINPTAHAEQDQTWEKIKERGELRVGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNEYKDIKDFNNKKVGAQKGTEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGAVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISKYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLIVAAALYFVLTFVLTRIMNMIEGRLNASD
>AP018923.1|BBG11305.1|1996686_1997415_-|glutamate-ABC-transporter-ATP-binding-protein
MPVIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>AP018923.1|BBG11304.1|1995408_1996536_-|iron-sulfur-(Fe-S)-cluster-binding-protein
MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLASFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILGLAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE
>AP018923.1|BBG11303.1|1994933_1995404_-|putative-tRNA(cytidine(34)-2'-O)-methyltransferase
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
>AP018923.1|BBG11302.1|1994175_1994775_-|hypothetical-protein
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>AP018923.1|BBG11301.1|1993998_1994151_-|hypothetical-protein
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
>AP018923.1|BBG11300.1|1992997_1993393_-|membrane-protein
MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATVEATKTKYRN
>AP018923.1|BBG11299.1|1991416_1992802_-|fumarate-hydratase,-class-II
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCEIMLSESKKHILNLAIGGTAVGTGINAHPEFGDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
>AP018923.1|BBG11298.1|1990134_1990956_+|hypothetical-protein
MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPTIDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
>AP018923.1|BBG11308.1|2003775_2003937_-|hypothetical-protein
MSGGQFDWGGRLLKGNGGAQRFPQNGWKSFIECKGIRELDCETYKSSRVERRT
>AP018923.1|BBG11309.1|2007192_2007384_-|hypothetical-protein
MKLKGIDGDPHKRWSMWFNSKQREEPYQILTSFDNSRDRAFPFGGQSDRWCMVVVSSCREMLG
>AP018923.1|BBG11310.1|2009037_2009484_-|peroxide-responsive-repressor-PerR
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
>AP018923.1|BBG11311.1|2009580_2010531_-|putative-D-3-phosphoglycerate-dehydrogenase
MKVVGLNRMREVETELQQRFSDLDFKFYKKASEIPESDLADLDILVGYDGGINEAFLQRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFNMNLIGLSKSGQNKDEFDEIYTIESLESTLPNADIIINALPETQETIHLLKKKHFELMKDEALFINIGRGSIVKEALLIEVLKSKVIRHAYLDVFENEPLKPNHELYELDNVTITAHITGNDYEAKYDLLDIFKNNLVNFLNKNDLIENEVDAKKGY
>AP018923.1|BBG11312.1|2010536_2010992_-|putative-bacterioferritin-comigratory-protein
MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIIYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIEKHGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG
>AP018923.1|BBG11313.1|2011072_2012362_+|glutamate-1-semialdehyde-2,1-aminomutase-2
MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHGAYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKLRDAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMPQPGFLEEVNEISHNNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPIGGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQLEEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIQQTLKAADYAFSQMK
>AP018923.1|BBG11314.1|2012654_2013749_+|hypothetical-protein
MRLGARIFKTGIAIILAMSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNISSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL
>AP018923.1|BBG11315.1|2013940_2015677_-|putative-multidrug-export-ATP-binding/permease-protein
MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL
>AP018923.1|BBG11316.1|2015967_2016510_-|hypothetical-protein
MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGGNDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWNERYKKIRQY
>AP018923.1|BBG11317.1|2016811_2017849_-|putative-A/G-specific-adenine-glycosylase
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVYDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNNQGQYLLQKRREKLLHGMWQFPMFESEHARRKMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAVSGAINIETLPDDMIWFDLSDRDQYTFPVPMSKIYQFING

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Crispr_ID: AP018923_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_10

2381325-2381410

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018923_10

>merge|AP018923|10|2381325-2381410|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTTCGTCACCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>AP018923|10|10|2381325-2381410|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	TCGTCACCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG11681.1\|2376090_2377356_-\|Lipid-II:glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
AP018923.1\|BBG11686.1\|2381135_2381306_+\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG11679.1\|2372305_2372623_+\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG11685.1\|2380659_2381010_-\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
AP018923.1\|BBG11683.1\|2378913_2379354_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
AP018923.1\|BBG11688.1\|2382629_2383229_-\|probable-molybdenum-cofactorguanylyltransferase	unknown	unknown	gnl\|CDD\|234725
AP018923.1\|BBG11678.1\|2371896_2372061_+\|DNA-repair/chromosome-segregation-ATPase	unknown	unknown	unknown
AP018923.1\|BBG11695.1\|2386771_2387776_-\|molybdopterin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|181084
AP018923.1\|BBG11687.1\|2381587_2382610_-\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
AP018923.1\|BBG11690.1\|2383474_2383921_-\|molybdopterin-converting-factor-subunit-2	unknown	unknown	gnl\|CDD\|223391
AP018923.1\|BBG11691.1\|2383934_2384420_-\|probable-molybdopterin-guanine-dinucleotidebiosynthesis	unknown	unknown	gnl\|CDD\|224677
AP018923.1\|BBG11692.1\|2384416_2385676_-\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
AP018923.1\|BBG11696.1\|2387945_2388551_-\|molybdenum-transport-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226628
AP018923.1\|BBG11684.1\|2379346_2380558_+\|putative-transporter-YbfD	unknown	unknown	gnl\|CDD\|341042
AP018923.1\|BBG11694.1\|2386234_2386741_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
AP018923.1\|BBG11682.1\|2377987_2378752_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379203
AP018923.1\|BBG11689.1\|2383235_2383469_-\|molybdopterin-synthase-small-subunit	unknown	unknown	gnl\|CDD\|340452
AP018923.1\|BBG11693.1\|2385738_2386233_+\|molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
AP018923.1\|BBG11680.1\|2372806_2375974_-\|putative-acriflavin-resistance-protein	unknown	unknown	gnl\|CDD\|223911
AP018923.1\|BBG11677.1\|2370855_2371764_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223751

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG11681.1\|2376090_2377356_-\|Lipid-II:glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	3.69463e-143
AP018923.1\|BBG11677.1\|2370855_2371764_-\|hypothetical-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	8.51168e-43
AP018923.1\|BBG11685.1\|2380659_2381010_-\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
AP018923.1\|BBG11683.1\|2378913_2379354_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.28933e-15
AP018923.1\|BBG11688.1\|2382629_2383229_-\|probable-molybdenum-cofactorguanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
AP018923.1\|BBG11687.1\|2381587_2382610_-\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
AP018923.1\|BBG11690.1\|2383474_2383921_-\|molybdopterin-converting-factor-subunit-2	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
AP018923.1\|BBG11691.1\|2383934_2384420_-\|probable-molybdopterin-guanine-dinucleotidebiosynthesis	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	4.35501e-50
AP018923.1\|BBG11692.1\|2384416_2385676_-\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	6.35078e-159
AP018923.1\|BBG11696.1\|2387945_2388551_-\|molybdenum-transport-ATP-binding-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	3.32197e-115
AP018923.1\|BBG11684.1\|2379346_2380558_+\|putative-transporter-YbfD	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.54033e-72
AP018923.1\|BBG11694.1\|2386234_2386741_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	9.7838e-65
AP018923.1\|BBG11682.1\|2377987_2378752_-\|hypothetical-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	4.64519e-37
AP018923.1\|BBG11689.1\|2383235_2383469_-\|molybdopterin-synthase-small-subunit	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
AP018923.1\|BBG11695.1\|2386771_2387776_-\|molybdopterin-biosynthesis-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	3.23825e-132
AP018923.1\|BBG11680.1\|2372806_2375974_-\|putative-acriflavin-resistance-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
AP018923.1\|BBG11693.1\|2385738_2386233_+\|molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	9.25584e-98

>AP018923.1|BBG11686.1|2381135_2381306_+|hypothetical-protein
MFRFISFGQLVVYSTTFIPKKDILQLNGMECDINVKEPLKIYYVVILKSGIEMIFS
>AP018923.1|BBG11685.1|2380659_2381010_-|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>AP018923.1|BBG11684.1|2379346_2380558_+|putative-transporter-YbfD
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYPIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>AP018923.1|BBG11683.1|2378913_2379354_+|MarR-family-transcriptional-regulator
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHKILLKETHND
>AP018923.1|BBG11682.1|2377987_2378752_-|hypothetical-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNNIEAVKNKLQSERVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>AP018923.1|BBG11681.1|2376090_2377356_-|Lipid-II:glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>AP018923.1|BBG11680.1|2372806_2375974_-|putative-acriflavin-resistance-protein
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTFAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVVTIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGNIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>AP018923.1|BBG11679.1|2372305_2372623_+|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>AP018923.1|BBG11678.1|2371896_2372061_+|DNA-repair/chromosome-segregation-ATPase
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>AP018923.1|BBG11677.1|2370855_2371764_-|hypothetical-protein
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFVMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVYVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
>AP018923.1|BBG11687.1|2381587_2382610_-|molybdenum-cofactor-biosynthesis-protein-A
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>AP018923.1|BBG11688.1|2382629_2383229_-|probable-molybdenum-cofactorguanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>AP018923.1|BBG11689.1|2383235_2383469_-|molybdopterin-synthase-small-subunit
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>AP018923.1|BBG11690.1|2383474_2383921_-|molybdopterin-converting-factor-subunit-2
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>AP018923.1|BBG11691.1|2383934_2384420_-|probable-molybdopterin-guanine-dinucleotidebiosynthesis
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>AP018923.1|BBG11692.1|2384416_2385676_-|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFVDGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>AP018923.1|BBG11693.1|2385738_2386233_+|molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNKTIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSNQ
>AP018923.1|BBG11694.1|2386234_2386741_-|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>AP018923.1|BBG11695.1|2386771_2387776_-|molybdopterin-biosynthesis-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWDGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>AP018923.1|BBG11696.1|2387945_2388551_-|molybdenum-transport-ATP-binding-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

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Crispr_ID: AP018923_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_11

2548338-2548416

Orphan

Consensus_repeat	Method
CCAACTTGCATTGTCTCTAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018923_11

>merge|AP018923|11|2548338-2548416|CRISPRCasFinder
CCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTAGTTGGGACTCCGCCAACTTGCATTGTCTGTAGAAA

>AP018923|11|11|2548338-2548416|CRISPRCasFinder
CCAACTTGCATTGTCTCTAGAAA	TTGGGAATCCAATTTCTCTTAGTTGGGACTCCG
CCAACTTGCATTGTCTGTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG11849.1\|2542042_2543401_-\|adenosylmethionine-8-amino-7--oxononanoateaminotransferase	unknown	unknown	gnl\|CDD\|273109
AP018923.1\|BBG11847.1\|2539940_2541056_-\|putative-8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|223234
AP018923.1\|BBG11854.1\|2548963_2549350_-\|GtrA-like-family-protein	unknown	unknown	gnl\|CDD\|225155
AP018923.1\|BBG11844.1\|2537730_2538708_+\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|273388
AP018923.1\|BBG11852.1\|2546275_2548039_-\|putative-ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
AP018923.1\|BBG11851.1\|2544517_2546251_-\|putative-ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
AP018923.1\|BBG11845.1\|2538759_2539227_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377623
AP018923.1\|BBG11843.1\|2536781_2537729_+\|gamma-hemolysin-component-C	unknown	unknown	gnl\|CDD\|369625
AP018923.1\|BBG11857.1\|2551650_2552862_+\|putative-bicyclomycin-resistance-protein-TcaB	unknown	unknown	gnl\|CDD\|340878
AP018923.1\|BBG11848.1\|2541033_2542041_-\|biotin-synthase	unknown	unknown	gnl\|CDD\|235755
AP018923.1\|BBG11856.1\|2550809_2551469_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222878
AP018923.1\|BBG11855.1\|2549607_2550750_+\|putative-glycerate-kinase	unknown	unknown	gnl\|CDD\|272872
AP018923.1\|BBG11860.1\|2554289_2555096_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|163441
AP018923.1\|BBG11846.1\|2539237_2539930_-\|6-carboxyhexanoate--CoA-ligase	unknown	unknown	gnl\|CDD\|224342
AP018923.1\|BBG11858.1\|2552984_2553458_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226231
AP018923.1\|BBG11862.1\|2556928_2559007_+\|probable-Na-antiporter-homolog	unknown	unknown	gnl\|CDD\|223104
AP018923.1\|BBG11861.1\|2555381_2556791_+\|amino-acid-ABC-transporter-homolog	unknown	unknown	gnl\|CDD\|224038
AP018923.1\|BBG11850.1\|2543378_2544065_-\|dethiobiotin-synthetase	unknown	unknown	gnl\|CDD\|223210
AP018923.1\|BBG11853.1\|2548726_2548981_+\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG11859.1\|2553570_2554227_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227323

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG11849.1\|2542042_2543401_-\|adenosylmethionine-8-amino-7--oxononanoateaminotransferase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
AP018923.1\|BBG11847.1\|2539940_2541056_-\|putative-8-amino-7-oxononanoate-synthase	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	3.62949e-138
AP018923.1\|BBG11854.1\|2548963_2549350_-\|GtrA-like-family-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	1.41026e-22
AP018923.1\|BBG11844.1\|2537730_2538708_+\|gamma-hemolysin-component-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
AP018923.1\|BBG11852.1\|2546275_2548039_-\|putative-ABC-transporter,-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.21336e-146
AP018923.1\|BBG11851.1\|2544517_2546251_-\|putative-ABC-transporter,-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.79158e-143
AP018923.1\|BBG11845.1\|2538759_2539227_-\|hypothetical-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.00179995
AP018923.1\|BBG11843.1\|2536781_2537729_+\|gamma-hemolysin-component-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	7.97441e-93
AP018923.1\|BBG11857.1\|2551650_2552862_+\|putative-bicyclomycin-resistance-protein-TcaB	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.81144e-73
AP018923.1\|BBG11848.1\|2541033_2542041_-\|biotin-synthase	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
AP018923.1\|BBG11856.1\|2550809_2551469_+\|hypothetical-protein	gnl\|CDD\|222878	PHA02562, 46, endonuclease subunit; Provisional.	0.00700231
AP018923.1\|BBG11855.1\|2549607_2550750_+\|putative-glycerate-kinase	gnl\|CDD\|272872	TIGR00045, Glycerate_kinase, glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation. [Energy metabolism, Other].	0
AP018923.1\|BBG11860.1\|2554289_2555096_-\|metallophosphoesterase	gnl\|CDD\|163441	TIGR03729, acc_ester, putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.	1.39132e-107
AP018923.1\|BBG11846.1\|2539237_2539930_-\|6-carboxyhexanoate--CoA-ligase	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	3.89049e-130
AP018923.1\|BBG11858.1\|2552984_2553458_-\|hypothetical-protein	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	2.01209e-37
AP018923.1\|BBG11862.1\|2556928_2559007_+\|probable-Na-antiporter-homolog	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	2.07656e-103
AP018923.1\|BBG11861.1\|2555381_2556791_+\|amino-acid-ABC-transporter-homolog	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
AP018923.1\|BBG11850.1\|2543378_2544065_-\|dethiobiotin-synthetase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	1.45777e-70
AP018923.1\|BBG11859.1\|2553570_2554227_+\|hypothetical-protein	gnl\|CDD\|227323	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown].	2.51069e-72

>AP018923.1|BBG11852.1|2546275_2548039_-|putative-ABC-transporter,-ATP-binding-protein
MNNQTNWIKILSGFASDSKWKIMLSILLSIISVFSGLVPYWAVFKIILMMINNAYTINSIMVYIFIALIAYISQVCCFGASTMLSHITAYEILSEIRKKLAQKLMRLPLGVVESKKIGELKNIFVDKVETIELPLAHMIPEVIGNLLLSAAIFLYIMLIDWRMASALLVTIPISIFAFKKVMSGFNETYAEQMKSNNYMNSAIVEFIEGIEVIKTFNQSQSSYKKYKDAVDNYKIHTLNWFKNTWGYMNLGASVLPSTFLGILPVGMYLISINQLNYAEFFLCIVLSLGVVAPIKNFTNYVNHLKSIQYALTEVNQILSLEELVLSTKFKKPQHYEIAFNNVGFSYNKDKDDLVFKHLSFTVPENNFTAIVGASGSGKSTIAKLISRYWDVTSGEITIGGINIKDIESKQLNDLVGFVGQDNFLLNLTFKENIKLGNPEATDEAVEKAAKLAQCHEFIEKLPDGYDTNVGTVGDKLSGGEKQRVTIARMILKDAPIIVLDEATAYVDPDNEQKIQEALNVLTQDKTLIVIAHRLSTIQHADQIIVLGKQQILEKGSHHLLLKLNGNYKKMWDTHMHTKDWGINTGHN
>AP018923.1|BBG11851.1|2544517_2546251_-|putative-ABC-transporter,-ATP-binding-protein
MFQITFKILNWIRPYKARMILGFSMSFLNAIFIALPIFLAAKIFNNVLSHKPIYMKDILNVVIIMVLLVIGRFITAYFKSKSHESIAYEMSAKERLDIGDKLKNVRLGYFNSHHSNELTTIVTTDLTFLENFAMKMVDVVVNGYILITVLILSLLVVSWQVSLLACIGVLLSFFAIQLLERKSRQNAPAYHNVQNQLVEKVLEVIRGIQVIKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMNHSIDLPTLIMISIFSFVIFDSVENINSAAHVLEMIDMTIDDIEKIKNAPELDENGKNLTIKNENIAFQNVNFSYDDKQVIKNVNFEIPTQTSTAIIGPSGSGKSTLCHLLLRFYDIDDGNIRIDGVDIKDMTLSTLMSKISAVFQKVYLFNDTIENNILFGNPGATKEEIIRAAKQACCHDFIMSLPEGYQTMLNEKGSNLSGGEKQRISIARAILKDAPIIILDEATASIDPENEQLIQTAINELSKGKTVITIAHKLETIKNADQIIVLNEGEIIQKGSHDELIRKPGMYQDFIRIKSKSAGWKL
>AP018923.1|BBG11850.1|2543378_2544065_-|dethiobiotin-synthetase
MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQDGTFPDLEVFKNECDLSYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIYEGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSYIEKDNQITIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
>AP018923.1|BBG11849.1|2542042_2543401_-|adenosylmethionine-8-amino-7--oxononanoateaminotransferase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEETIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEMMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYNAFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRKLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRKCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>AP018923.1|BBG11848.1|2541033_2542041_-|biotin-synthase
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>AP018923.1|BBG11847.1|2539940_2541056_-|putative-8-amino-7-oxononanoate-synthase
MMFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLEKYPNQNIPKIIISDSAFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGVDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED
>AP018923.1|BBG11846.1|2539237_2539930_-|6-carboxyhexanoate--CoA-ligase
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQHLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFASAKIGYHRLFDIKPVNTRYGGRIIFVDDRIDLNHYISFLESTPKQVVYERV
>AP018923.1|BBG11845.1|2538759_2539227_-|hypothetical-protein
MTSKDITQISVIAAILTILAALKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSLLLLVFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>AP018923.1|BBG11844.1|2537730_2538708_+|gamma-hemolysin-component-B
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>AP018923.1|BBG11843.1|2536781_2537729_+|gamma-hemolysin-component-C
MLKNKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN
>AP018923.1|BBG11853.1|2548726_2548981_+|hypothetical-protein
MSPFLLLRVRNQCAKNATRQPLKAEVMMSINKLNIRHTPPLCVKVTPEMLGDHYIISFIYYISRNIKVRVKRFLVVYATLITIF
>AP018923.1|BBG11854.1|2548963_2549350_-|GtrA-like-family-protein
MKLTQTHAEILKFIIVGGINTLNYYVVYLLLLKLLHIEYMISHITGFLVAFVISYYLNCYFVYRVKPTWRKFISFPITQIVNVSLQTVLLYVFVSWLNLPAEIAPFAGLVITIPITFVLSKWILKDSN
>AP018923.1|BBG11855.1|2549607_2550750_+|putative-glycerate-kinase
MQLQKIVIAPDSFKESMTAQQVGNIIKQAFTNVYGNTLHYDIIPMADGGEGTTDALMHATGATKYTVIVNDPLMRPIEACYARADEQQIAIIEMAAASGLDLLEKEERNPLYTSSYGTGELIKDALNHGAKTIILGIGGSATNDGGTGMLSALGVQFTDVNGDLLQMNGANLAHIAQIDITNLDSRLKEVTFKVACDVSNPLLGENGATYIYGPQKGADAKMIPKLDFAMSHYHDKIKMCTGKSVNQIPGSGAAGGMGAALLAFCETTLTKGIDVVFDITDFHQRIKDADLVITGEGRMDYQTIFGKTPVGVALAAKQYHIPVIAICGSLGENYQHVYDFGIDSAYSIISSPSTLEDVLQNSEQNLLNTATDIARILKLQ
>AP018923.1|BBG11856.1|2550809_2551469_+|hypothetical-protein
MKRTDKYRDSYQYDNQNQNHRRQSEDASYRQQYAKGDPEEHPERYYNGRDYRREQILEEENEKSRRSKKWLYIIIAILLIIVAIFVTRALLNNDSDKVSNDPKVSQNYKKQVENQDGQINQQVDNAKENIKNNQKTDDIIKNLQNQIDNLKQQEQNKADSKLTQFYQDQINKLTEANNALKNNASQGKIESMLNDINTKFDSIKSKLESLFKDENGGAN
>AP018923.1|BBG11857.1|2551650_2552862_+|putative-bicyclomycin-resistance-protein-TcaB
MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMIGLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVIVIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALIILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASPFITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALIILTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAVAPLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
>AP018923.1|BBG11858.1|2552984_2553458_-|hypothetical-protein
MEYQLQQLASLTLVGIKETYENGRQAQQHIAGFWQRCYQEGVIADLQLKNNGDLAGILGLCISELDGKMSYMIAVTGDNSADIEKYDVITLASSKYMVFEAQGAVPKAVQQKMEEVHHYIHQYQADTVKSAPFFELYQDGDTTSEKYITEIWMPVKG
>AP018923.1|BBG11859.1|2553570_2554227_+|hypothetical-protein
MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNNPHKGYVGHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLGSKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
>AP018923.1|BBG11860.1|2554289_2555096_-|metallophosphoesterase
MKIGTIADLHIDRHNKKTSEDYLEALVEIVKYKKLDILLIAGDISNHYQLTHQFITQLTKQLDIPVKFVPGNHDLWEVESMTTQDIWNNYKSMSQCLVGKPFIVNEEWAIIGHTGWYDYSFAAQRFSLEHLQKGKHYGATWQDKERISWGISDQNLSKIAAEQVKKDILEVGNRRVILVTHVVTHPDFIVPMPHRIFDFYNAFIGTSDFNPLYAMFDIPYSIMGHVHFRKSVIDDGRCYLCPCLGYPRQWRSEDIYQEINETIQIIEI
>AP018923.1|BBG11861.1|2555381_2556791_+|amino-acid-ABC-transporter-homolog
MARKLHRELNNRHIQLIAIGGAIGTGLFLGSGQTISLTGPSLLFTYMIIGVVLFAFMRALGELLLSNTRFNSFVDIANEYLGPFGGFVIGWTYWLCWIVSSMSDLTAMGQYFAFWYPQVPNWITVLFIVLILISFNLLGARLFGELEFWFSIIKVVTIIAMVIVGLVLIFFSFKTHYGHASFTNLISHGGMFPGGTFGFLMSFQIAVYSFIGIELIGVTAGETKDPEKTLPKAINNVPIRILLFYIGGLLVIMSVIPWNDIDPNSSPFVKLFTLIGVPFAAGVVNFVVLTAAASATNSGIYSNSRILFGLSQQGLGPKVLNKTNSHGVPYLSMLVSSIALLIAALLNYIFPNAIQLFIYVTTLSTVLFLVVWAMIIVAYLMYLKKHPEAHKNSKFKLIGGKPIAYIILAFFFFVFILLFFSDETRAAIYISPFWFIFLFFFYKKYKTNAEKLAYEQRQNDSGHFRYDNQ
>AP018923.1|BBG11862.1|2556928_2559007_+|probable-Na-antiporter-homolog
MALLEAFLIFIFAVIISSVINNRFPQIPTAFIQIALGVVIFIIPIQVDFQFNSEVFMFAVIAPLLFVEGTHVSRTKLLEYRKPILLMSMALVFATVVGVGYFIHWIWPALPMPAAFAIAAILCPTDAVAVSAITRGKLLPKGSMTILEGESLLNDAAGIISFKIAVTALVTGTFSLFQAVEQFIISTILGVLIGAIIGFVVVRIRIDLTANKGLKDNNTLTFIQLLTPFVVYFLAEEVHASGIIAVVIAGLIHGLERDRLIRAQTELQMNYHQIWNTFSYALNGFVFVVLGFMIPTVVIDIFQTEPDNFSFLIVITILIAIAIYACRFVWVYFWYKDFYFPKNIQSYLDEEHDSHETPPSRVRYAFIMTMCGIHGTISLSMALTLPFIITKGQAFEYRNDLLFIASFMVLISLILAQIVLPLITPSAEDTTFKGMTYQSAKIFIVQKVIQHFKNESKKDKNDTNYRPVLNQYYGELLFLLNSEPDNQNTKELKRLEDIAKVIETSTLERLIDKGKATYQDINNYRNIVELTETHRTASFVEKFANFFKMLWLRLKAMKHYKALNKESKKQEFENSFKDVQKIMRIVNHNIILRLKEEQNSTNVLEVSLVINHYYDMSRSLKWRAQRRKERQENSNQIIPQAMFHNHKLEALYLQRHLLDELIRKNKINNIVAAQIRENINYNEIVLSLQSKH

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Crispr_ID: AP018923_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP018923_12

2688523-2688630

Orphan

Consensus_repeat	Method
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP018923_12

>merge|AP018923|12|2688523-2688630|CRISPRCasFinder
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG

>AP018923|12|12|2688523-2688630|CRISPRCasFinder
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	ATCTTCGCTCCAACTGCATAAGAGCCACTA
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
AP018923.1\|BBG11975.1\|2679405_2681895_-\|putative-antibiotic-transport-associated-protein-homolog-ydfJ	unknown	unknown	gnl\|CDD\|225272
AP018923.1\|BBG11981.1\|2688702_2688909_+\|copper-chaperone-CopZ	unknown	unknown	gnl\|CDD\|225328
AP018923.1\|BBG11974.1\|2678962_2679190_-\|FeoA-family-protein	unknown	unknown	gnl\|CDD\|224830
AP018923.1\|BBG11990.1\|2698430_2700242_-\|O-acetyltransferase-OatA	unknown	unknown	gnl\|CDD\|224748
AP018923.1\|BBG11976.1\|2682039_2682588_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224228
AP018923.1\|BBG11985.1\|2693120_2693984_-\|phytoene/squalene-synthetase	unknown	unknown	gnl\|CDD\|224478
AP018923.1\|BBG11973.1\|2676956_2678951_-\|ferrous-iron-transporter-B	unknown	unknown	gnl\|CDD\|223447
AP018923.1\|BBG11986.1\|2694020_2695148_-\|4,4'-diaponeurosporenoate-glycosyltransferase	unknown	unknown	gnl\|CDD\|132997
AP018923.1\|BBG11978.1\|2684676_2685276_-\|putative-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
AP018923.1\|BBG11983.1\|2690019_2691174_-\|N-succinyldiaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181219
AP018923.1\|BBG11979.1\|2685514_2685706_+\|hypothetical-protein	unknown	unknown	unknown
AP018923.1\|BBG11982.1\|2688998_2689997_-\|putative-D-specific-D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|181499
AP018923.1\|BBG11984.1\|2691600_2693109_-\|dehydrosqualene-desaturase	unknown	unknown	gnl\|CDD\|224154
AP018923.1\|BBG11980.1\|2685945_2688354_+\|copper-exporting-P-type-ATPase-A	unknown	unknown	gnl\|CDD\|319783
AP018923.1\|BBG11988.1\|2696639_2697137_-\|putative-glycosyl-4,4'-diaponeurosporenoate-acyltransferase	unknown	unknown	unknown
AP018923.1\|BBG11987.1\|2695153_2696647_-\|diapolycopene-oxygenase	unknown	unknown	gnl\|CDD\|224154
AP018923.1\|BBG11971.1\|2674599_2676705_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpL	unknown	unknown	gnl\|CDD\|223616
AP018923.1\|BBG11977.1\|2682942_2684487_-\|1-pyrroline-5-carboxylate-dehydrogenase	unknown	unknown	gnl\|CDD\|179543
AP018923.1\|BBG11989.1\|2697302_2698070_-\|staphylococcal-secretory-antigen-SsaA	unknown	unknown	gnl\|CDD\|226451
AP018923.1\|BBG11972.1\|2676773_2676944_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378908

Protein	Function_ID	Function_description	E-value
AP018923.1\|BBG11975.1\|2679405_2681895_-\|putative-antibiotic-transport-associated-protein-homolog-ydfJ	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	1.58078e-171
AP018923.1\|BBG11981.1\|2688702_2688909_+\|copper-chaperone-CopZ	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	3.85103e-21
AP018923.1\|BBG11974.1\|2678962_2679190_-\|FeoA-family-protein	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	9.02667e-20
AP018923.1\|BBG11990.1\|2698430_2700242_-\|O-acetyltransferase-OatA	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	6.58134e-84
AP018923.1\|BBG11976.1\|2682039_2682588_+\|hypothetical-protein	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.81924e-09
AP018923.1\|BBG11985.1\|2693120_2693984_-\|phytoene/squalene-synthetase	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	2.37403e-100
AP018923.1\|BBG11973.1\|2676956_2678951_-\|ferrous-iron-transporter-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
AP018923.1\|BBG11986.1\|2694020_2695148_-\|4,4'-diaponeurosporenoate-glycosyltransferase	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	9.85714e-23
AP018923.1\|BBG11978.1\|2684676_2685276_-\|putative-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	5.94515e-91
AP018923.1\|BBG11983.1\|2690019_2691174_-\|N-succinyldiaminopimelate-aminotransferase	gnl\|CDD\|181219	PRK08068, PRK08068, transaminase; Reviewed.	2.7078e-143
AP018923.1\|BBG11982.1\|2688998_2689997_-\|putative-D-specific-D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|181499	PRK08605, PRK08605, D-lactate dehydrogenase; Validated.	0
AP018923.1\|BBG11984.1\|2691600_2693109_-\|dehydrosqualene-desaturase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.03717e-133
AP018923.1\|BBG11980.1\|2685945_2688354_+\|copper-exporting-P-type-ATPase-A	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
AP018923.1\|BBG11987.1\|2695153_2696647_-\|diapolycopene-oxygenase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	9.69418e-133
AP018923.1\|BBG11971.1\|2674599_2676705_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpL	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
AP018923.1\|BBG11977.1\|2682942_2684487_-\|1-pyrroline-5-carboxylate-dehydrogenase	gnl\|CDD\|179543	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional.	0
AP018923.1\|BBG11989.1\|2697302_2698070_-\|staphylococcal-secretory-antigen-SsaA	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.53845e-31
AP018923.1\|BBG11972.1\|2676773_2676944_-\|hypothetical-protein	gnl\|CDD\|378908	pfam12669, P12, Virus attachment protein p12 family. This family of proteins are related to Virus attachment protein p12 from the African swine fever virus. The family appears to contain an N-terminal signal peptide followed by a short cysteine rich region. The cysteine rich region is extremely variable and it is possible that only the N-terminal region is homologous.	0.00119197

>AP018923.1|BBG11980.1|2685945_2688354_+|copper-exporting-P-type-ATPase-A
MANTKKTTLDITGMTCAACSNRIEKKLNKLDDVNAQVNLTTEKATVEYNPDQHDVQEFINTIQHLGYGVAVETVELDITGMTCAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDNNKDQTSRKAEALQHKLIKLIISAVLSLPLLMLMFVHLFNMHIPALFTNPWFQFILATPVQFIIGWQFYVGAYKNLRNGGANMDVLVAVGTSAAYFYSIYEMVRWLNGSTTQPHLYFETSAVLITLILFGKYLEARAKSQTTNALGELLSLQAKEARILKDGNEVMIPLNEVHVGDTLIVKPGEKIPVDGKIIKGMTAIDESMLTGESIPVEKNVDDTVIGSTMNKNGTITMTATKVGGDTALANIIKVVEEAQSSKAPIQRLADIISGYFVPIVVGIALLTFIVWITLVTPGTFEPALVASISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGEFVERTHQIDTIVLDKTGTITNGRPVVTDYHGDNQTLQLLATAEKDSEHPLAEAIVNYAKEKQLTLTETTTFKAVPGHGIEATIDHHHILVGNRKLMADNDISLPKHISDDLTYYERDGKTAMLIAVNYSLTGIIAVADTVKDHAKDAIKQLHDMGIEVAMLTGDNKNTAQAIAKQVGIDTVIADILPEEKAAQIAKLQQQGKKVAMVGDGVNDAPALVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGLLAPWVAGAAMALSSVSVVTNALRLKKMRLKPRRKDA
>AP018923.1|BBG11979.1|2685514_2685706_+|hypothetical-protein
MRILITGTVAILIILGLVKTIQDHEMTNDTSRQLSDNKDDDKVIHLNNFKNLHAKEFNPSDFF
>AP018923.1|BBG11978.1|2684676_2685276_-|putative-acetyltransferase
MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDLPSETLNDETIK
>AP018923.1|BBG11977.1|2682942_2684487_-|1-pyrroline-5-carboxylate-dehydrogenase
MVVEFKNEPGYDFSVQENVDMFKKALKDVEKELGQDIPLVINGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEGKLEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF
>AP018923.1|BBG11976.1|2682039_2682588_+|hypothetical-protein
MKETDLRVIKTKKALSSSLLQLLEQQLFQTITVNQICDNALVHRTTFYKHFYDKYDLLEYLFNQLTKDYFARDISDRLNHPFQTISDTINNKEDLRDIAEFQEEDAEFNKVLKNVCIKIMHNDIKNNRDRIDIDSDIPDNLIFYIYDSLIEGFMHWIKDEKIDWPGEEIDKIFHKVINIKIK
>AP018923.1|BBG11975.1|2679405_2681895_-|putative-antibiotic-transport-associated-protein-homolog-ydfJ
MAKFLYKMGTFIAKHKWSAVIAWIVIVAAILIPLATNAPKFDNDIKMTGLESLDTNKKIEKHFNQDSEKAQIRVVFKTTKDDGIVQPNITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQSNFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYDIISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDNDYALMVVIPKKGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIPLFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETTGPMLAFLPVITIGILFGLAMDYEVFLMSRIHEEYSKTGDNDYSIKVGLKESGPVIVAAALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGKGSWYLPAWLNRIIPRVDIEGHALEKYKTVESQESEAKDSKETYDTTFKIYPQGATNVSKHQDVHGQDDVRSIVLDDKTMALYQEVKQQSASSFFLYDALIDYQNKHQLNSKQQVTNIEQLNKNIEKLNQLLEKNLRNKS
>AP018923.1|BBG11974.1|2678962_2679190_-|FeoA-family-protein
MLNIKNGEMNKAYKIKRMDIANENMLYRLSAFGLTDDAIITIKQKCLFKGPCIIEVNGQQLSIRHCDACSIALEE
>AP018923.1|BBG11973.1|2676956_2678951_-|ferrous-iron-transporter-B
MENYCILGNPNVGKTSLFNALTGSYEYIGNWSGVTVEKKVGKLKENVGQLIDLPGTYDLSPISKDETVVTDYLLNDSFSGIINIVDASQLKRNMQLTVQLLELNQPIYIGLNMIDVATKRGIKIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYQPHFKINYGEKIEETIKNMCQIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVDKQVEAVSVRREMERIRNHYIETLLQDVVTYPDEDKQYFSSRIDKILTHKYIGMPIFLAIMWLIFQTTFTWIGTPLSDQLDAFIGGTFTDSVKTIMNYLGVIPFLQDLITDGIIAGVGSVLVFVPQIVVLFFFISLLEDSGYMARIAVLMDRIMESFGLSGKSFIPMIIGFGCNVPSIMAARSIENEKERLTTILIAPFMSCSARLPVYALFVGIFFKENQSLVVLSLYVLGIIMAFLVSTVLTKTILKNDNAIFIVELPTYRVPSIKTLWRSTWEKAKGFVRKAGTFIFGGSVVIWLLSYVGPHGINVNINQSFLHMVGSFFGMLVQPLGFGTWQAGATLVPGFLAKEVIVSSMAIIYSSGDAGLVNVIQNQFTPLSAYAFMIFILLYIPCVSTVAAIRKETYSWKWTALAVVYPLVTAYVLTFIFYQIGHLFV
>AP018923.1|BBG11972.1|2676773_2676944_-|hypothetical-protein
MSVIINILIFLAIFGYALYTLVKFFKRSKQGKCGTCDINRDCCGTEQHTANHFPGK
>AP018923.1|BBG11971.1|2674599_2676705_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpL
MNNGFFNSDFDSIFRRMMQDMQGSNQVGNKKYYINGKEVSPEELAQLTQQGGNHSAEQSAQAFQQAAQRQQGQQGGNGNYLEQIGRNLTQEARDGLLDPVIGRDKEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRKAVSAEEYKKADDIQNEIKSLQDKLENSNGEHTAVATVHDISDTIQRLTGIPVSQMDDNDIERLKNISNRLRSKIIGQDQAVEMVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAIDLFGNKDALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAGFGNGNDAEEKDIMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVSQDAKDWLIEEGYDEELGARPLRRIVEQQVRDKITDYYLDHTDVKHVDIDVEDNELVVKGK
>AP018923.1|BBG11981.1|2688702_2688909_+|copper-chaperone-CopZ
MSQEILNVEGMSCGHCKSAVESALNNIDGVTSADVNLENGQVSVQYDDSKVAVSQMKDAIEDQGYDVV
>AP018923.1|BBG11982.1|2688998_2689997_-|putative-D-specific-D-2-hydroxyacid-dehydrogenase
MTKIKIMSVRDEDMPYIKAWAEKHHVEVDITKEALTDDNVEGVAGYDGLSLSQQIPLSEHVYKRLNELGIKQIAQRSAGFDTYDLELANKYNLIVSNVPSYSPNSIAEFAVNQAINVVRHFNQIQTKVREHDFRWEPTILSKSIKDLKVAVIGTGRIGRVVADIFANGYQSDVVAYDPFPNAKIATYVDYKDTIEEAVEGADIVTLHVPATKYNHYLFNAELFKHFKKGAVFVNCARGSLVDTKALLDALDNGVIKGAALDTYEFERKLFPSDQRGKTLNDPLLESLIDREDVILTPHIAFYTEAAVKNLIVDALDATLDVLQTGDTRLRVN
>AP018923.1|BBG11983.1|2690019_2691174_-|N-succinyldiaminopimelate-aminotransferase
MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQQALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSTVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKDTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYLYE
>AP018923.1|BBG11984.1|2691600_2693109_-|dehydrosqualene-desaturase
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPDVYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGFMSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAKLKTLNHADQLIEHYIDNEKIQKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIELNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKIADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAVADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIKEIIYRKLATIEVFEDIKSHIVSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGVPIVLTSAKITVDEMIKDIEQGV
>AP018923.1|BBG11985.1|2693120_2693984_-|phytoene/squalene-synthetase
MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI
>AP018923.1|BBG11986.1|2694020_2695148_-|4,4'-diaponeurosporenoate-glycosyltransferase
MKWLSRILTVIVTMSMACGALIFNRRHQLKAKTLNFNHKALTIIIPARNEEKRIGHLLHSIIQQQVPVDVIVMNDGSTDETARVARSYGATVVDVVDDTDGKWYGKSHACYQGVTHACTNRIAFVDADVTFLRKDAVETLINQYQLQGEKGLLSVQPYHITKRFYEGFSAIFNLMTVVGMNVFSTLDDGRTNQHAFGPVTLTNKEDYYATGGHKSANRHIIEGFALGSAYTSQSLPVTVYEGFPFVAFRMYQEGFQSLQEGWTKHLSTGAGGTKPKIMTAIVLWLFGSIASILGLCLSLKYRQMSVRKMVALYLSYTTQFIYLHRRVGQFSNLLMVCHPLLFMFFTKIFIQSWKQTHRYGVVEWKGRQYSISKEQ
>AP018923.1|BBG11987.1|2695153_2696647_-|diapolycopene-oxygenase
MTKHIIVIGGGLGGISAAIRMAQSGYSVSLYEQNNHIGGKVNRHESDGFGFDLGPSILTMPYIFEKLFEYSKKQMSDYVTIKRLPHQWRSFFPDGTTIDLYEGIKETGQHNAILSKQDIEELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNALINYDYVHTMQQAIDKRISNPYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLWYVEGGIHHLANALEKLAREEGVTIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIISNMEVIPTYKYLIHLDTQRLNKLEREFEPASSGYVMHLGVACQYPQLAHHNFFFTENAYLNYQQVFHEKVLPDDPTIYLVNTNKTDHTQAPVGYENIKVLPHIPYIQDQPFTTEDYAKFRDKILDKLEKMGLTDLRKHIIYEDVWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGIPMVTLSGQQVADKINAREAKNRK
>AP018923.1|BBG11988.1|2696639_2697137_-|putative-glycosyl-4,4'-diaponeurosporenoate-acyltransferase
MKTMKKYIKTAFFCSMYWLIVQLNIANLGTRIPDKYFRQKYIIFKSFNFEKHGKFWNKWFYVRKWKHKILDGHQLNQNIYDQRHLMTINTDEIEKMIIETKRAELIHWISILPVIIFNKGPRLVKYINIFYAMIANVPIIIVQRYNRPRLTQLLRILKRRGERHD
>AP018923.1|BBG11989.1|2697302_2698070_-|staphylococcal-secretory-antigen-SsaA
MKKIVTATIATAGLATIAFAGHDAQAAEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTGNWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGASYSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASNWANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTSRTISANQAGSYNFIH
>AP018923.1|BBG11990.1|2698430_2700242_-|O-acetyltransferase-OatA
MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSGGFLGVDTFFVISGYLITSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAAIFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQTLFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIVVSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSMKPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVYIIEILLTALMAEISYRFIETPIRKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTTKKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLVDATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEGRINKLIYEAAEKRSNVHLVDWYKASAGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHATNKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	2820807-2820835	0	1.0
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	367304-367332	1	0.966
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	1260457-1260485	1	0.966
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	1519555-1519583	1	0.966
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	1883975-1884003	1	0.966
AP018923_3	3.1\|865703\|34\|AP018923\|CRISPRCasFinder	865703-865736	34	AP018923.1	1384906-1384939	1	0.971
AP018923_3	3.1\|865703\|34\|AP018923\|CRISPRCasFinder	865703-865736	34	AP018923.1	1474677-1474710	1	0.971
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	166335-166363	2	0.931
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	166393-166421	2	0.931
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	274417-274445	2	0.931
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	817018-817046	2	0.931
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	865745-865773	2	0.931
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	914834-914862	2	0.931
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	1176553-1176581	2	0.931
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	AP018923.1	1176664-1176692	2	0.931
AP018923_10	10.1\|2381355\|26\|AP018923\|CRISPRCasFinder	2381355-2381380	26	AP018923.1	1176475-1176500	2	0.923

1. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 2820807-2820835, mismatch: 0, identity: 1.0

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtagaatttcttttcgaaa	Protospacer
*****************************

2. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 367304-367332, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

3. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 1260457-1260485, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

4. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 1519555-1519583, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

5. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 1883975-1884003, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

6. spacer 3.1|865703|34|AP018923|CRISPRCasFinder matches to position: 1384906-1384939, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

7. spacer 3.1|865703|34|AP018923|CRISPRCasFinder matches to position: 1474677-1474710, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

8. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 166335-166363, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

9. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 166393-166421, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

10. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 274417-274445, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

11. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 817018-817046, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaaattcttttcgaaa	Protospacer
********.******* ************

12. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 865745-865773, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

13. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 914834-914862, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

14. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 1176553-1176581, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

15. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to position: 1176664-1176692, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

16. spacer 10.1|2381355|26|AP018923|CRISPRCasFinder matches to position: 1176475-1176500, mismatch: 2, identity: 0.923

tcgtcaccttctatgttggggccccg	CRISPR spacer
tcgtcagcttctgtgttggggccccg	Protospacer
****** *****.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP018923_7	7.1\|1826647\|27\|AP018923\|CRISPRCasFinder	1826647-1826673	27	KM359505	Prochlorococcus phage P-TIM68, complete genome	102710-102736	5	0.815
AP018923_2	2.1\|811584\|29\|AP018923\|CRISPRCasFinder	811584-811612	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759
AP018923_9	9.1\|2282167\|33\|AP018923\|CRISPRCasFinder	2282167-2282199	33	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23035-23067	7	0.788
AP018923_9	9.1\|2282167\|33\|AP018923\|CRISPRCasFinder	2282167-2282199	33	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7568-7600	7	0.788
AP018923_6	6.1\|1733965\|32\|AP018923\|CRISPRCasFinder	1733965-1733996	32	MT889383	Mycobacterium phage MiniLon, complete genome	11248-11279	9	0.719
AP018923_6	6.1\|1733965\|32\|AP018923\|CRISPRCasFinder	1733965-1733996	32	KT281791	Mycobacterium phage Lolly9, complete genome	11248-11279	9	0.719

1. spacer 7.1|1826647|27|AP018923|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

gaatttcgaaaagaaattctacagacc	CRISPR spacer
ctatttccaaaagaaattatacagatc	Protospacer
  ***** ********** ******.*

2. spacer 2.1|811584|29|AP018923|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

3. spacer 9.1|2282167|33|AP018923|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 7, identity: 0.788

ttgcatatctttagctttattgtttgcaactga	CRISPR spacer
ttgcatatctttagctttatagcttttatatgc	Protospacer
******************** *.** .*  **

4. spacer 9.1|2282167|33|AP018923|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

ttgcatatctttagctttattgtttgcaactga	CRISPR spacer
ttgaataactttagctttattgttataaacagt	Protospacer
*** *** ****************   *** *

5. spacer 6.1|1733965|32|AP018923|CRISPRCasFinder matches to MT889383 (Mycobacterium phage MiniLon, complete genome) position: , mismatch: 9, identity: 0.719

gcacattattgaaatctgacttttggtcagct	CRISPR spacer
accccttcttgaaatctgactttaggtcctga	Protospacer
.* * ** *************** ****

6. spacer 6.1|1733965|32|AP018923|CRISPRCasFinder matches to KT281791 (Mycobacterium phage Lolly9, complete genome) position: , mismatch: 9, identity: 0.719

gcacattattgaaatctgacttttggtcagct	CRISPR spacer
accccttcttgaaatctgactttaggtcctga	Protospacer
.* * ** *************** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

748673 : 756494

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG10120.1\|748673_749729_-	histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
BBG10121.1\|749728_750415_-	response regulator SaeR	NA	NA	NA	NA
BBG10122.1\|750389_750863_-	hypothetical protein	NA	NA	NA	NA
BBG10123.1\|751205_751646_-	hypothetical protein	NA	NA	NA	NA
BBG10124.1\|751925_752510_-	hypothetical protein	NA	NA	NA	NA
BBG10125.1\|752608_753322_-	coenzyme PQQ synthesis homologue	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
BBG10126.1\|753325_753745_-	6-pyruvoyl tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
BBG10127.1\|753746_754415_-	7-cyano-7-deazaguanine synthase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
BBG10128.1\|754765_755359_+	putative para-aminobenzoate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.2e-38	43.5
BBG10129.1\|755342_756494_+	putative para-aminobenzoate synthase component I	S4VNU7	Pandoravirus	2.1e-23	36.1

DBSCAN-SWA_2

768466 : 783196

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG10139.1\|768466_769525_+	histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	1.8e-21	26.7
BBG10140.1\|769819_770362_+	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
BBG10141.1\|771042_771960_-	putative lipid kinase	A0A1V0SBJ0	Catovirus	2.8e-07	22.4
BBG10142.1\|772228_773734_-	di-tripeptide ABC transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
BBG10143.1\|774073_774574_-	NADPH-dependent 7-cyano-7-deazaguaninereductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
BBG10144.1\|774593_775460_-	putative transporter	NA	NA	NA	NA
BBG10145.1\|776260_776659_+	ribonucleotide reductase stimulatory protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
BBG10146.1\|776621_778727_+	ribonucleoside-diphosphate reductase	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
BBG10147.1\|778844_779816_+	ribonucleoside-diphosphate reductase minorsubunit	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
BBG10148.1\|780523_781495_+	iron (Fe+3) ABC superfamily ATP binding cassette transporter, membrane protein	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
BBG10149.1\|781481_782438_+	putative ferrichrome ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
BBG10150.1\|782434_783196_+	putative ferrichrome ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6

DBSCAN-SWA_3

1033585 : 1042058

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG10388.1\|1033585_1034068_+	putative Phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
BBG10389.1\|1034054_1035179_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
BBG10390.1\|1035182_1035887_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
BBG10391.1\|1035886_1036150_+	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
BBG10392.1\|1036151_1036823_+	phosphoribosylformylglycinamidine synthase I PurQ	NA	NA	NA	NA
BBG10393.1\|1036815_1039005_+	phosphoribosylformylglycinamidine synthase 2	A6N228	Microbacterium_phage	1.0e-140	39.7
BBG10394.1\|1038983_1040468_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
BBG10395.1\|1040460_1041489_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
BBG10396.1\|1041491_1042058_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.0e-28	40.1

DBSCAN-SWA_4

1093716 : 1140039

Staphylococcus_phage(83.33%)

portal,head,holin,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG10447.1\|1093716_1094199_+	phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.6e-28	46.2
BBG10448.1\|1094260_1095400_-	hypothetical protein	NA	NA	NA	NA
BBG10449.1\|1095526_1096084_+	hypothetical protein	NA	NA	NA	NA
BBG10450.1\|1096163_1096337_+	50S ribosomal protein L32	NA	NA	NA	NA
BBG10451.1\|1096453_1097839_-	site-specific recombinase	I1W625	Staphylococcus_phage	2.5e-265	100.0
BBG10452.1\|1097947_1098127_+	excisionase	Q4ZBP0	Staphylococcus_phage	3.7e-25	100.0
BBG10453.1\|1098106_1099039_-	phage protein	A0EX19	Staphylococcus_virus	6.7e-174	100.0
BBG10454.1\|1099070_1099796_-	phage protein	A0A0F6N4L7	Staphylococcus_phage	9.9e-125	100.0
BBG10455.1\|1099823_1100498_-	phage protein	A0A0F6N3H6	Staphylococcus_phage	4.9e-126	100.0
BBG10456.1\|1100514_1100847_-	XRE family transcriptional regulator	R4IH08	Staphylococcus_phage	4.1e-57	100.0
BBG10457.1\|1101109_1101304_+	phage DNA-binding protein	A0A0F6N3M9	Staphylococcus_phage	1.1e-25	100.0
BBG10458.1\|1101303_1102071_+	phage antirepressor KilAC domain protein	A0A0F6N3N8	Staphylococcus_phage	1.1e-142	100.0
BBG10459.1\|1102071_1102296_+	phage protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
BBG10460.1\|1102335_1102479_+	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
BBG10461.1\|1102500_1103148_-	phage protein	S4V9K2	Staphylococcus_phage	3.5e-113	99.5
BBG10462.1\|1103206_1103335_+	hypothetical protein	C8CGY4	Staphylococcus_phage	7.3e-15	100.0
BBG10463.1\|1103327_1103489_+	phi PVL ORF38-like protein	Q4ZBM9	Staphylococcus_phage	1.9e-20	98.1
BBG10464.1\|1103580_1103841_+	phage protein	Q4ZBM7	Staphylococcus_phage	1.2e-43	100.0
BBG10465.1\|1103850_1104072_+	phage protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
BBG10466.1\|1104064_1104853_+	hypothetical protein	Q4ZBM5	Staphylococcus_phage	5.7e-142	99.6
BBG10467.1\|1104881_1105433_+	phi ETA ORF18-like protein	Q4ZBM4	Staphylococcus_phage	3.4e-101	100.0
BBG10468.1\|1105445_1106117_+	hypothetical protein	A7TWM9	Staphylococcus_phage	2.0e-127	100.0
BBG10469.1\|1106222_1107080_-	phage protein	Q4ZBL8	Staphylococcus_phage	9.5e-159	100.0
BBG10470.1\|1107143_1107881_+	hypothetical protein	Q6R839	Staphylococcus_virus	2.1e-98	81.8
BBG10471.1\|1107890_1108670_+	DNA replication protein	G4KNP1	Staphylococcus_phage	1.9e-145	99.6
BBG10472.1\|1108663_1108822_+	phage protein	Q4ZBL5	Staphylococcus_phage	3.4e-22	100.0
BBG10473.1\|1108834_1109056_+	hypothetical protein	Q4ZBL4	Staphylococcus_phage	1.7e-35	100.0
BBG10474.1\|1109065_1109473_+	endodeoxyribonuclease RusA	D2JGK8	Staphylococcus_phage	1.7e-73	100.0
BBG10475.1\|1109472_1109658_+	phage protein	D2JGK9	Staphylococcus_phage	7.0e-27	100.0
BBG10476.1\|1109658_1110018_+	phi PVL ORF50-like protein	D2JGL0	Staphylococcus_phage	5.0e-61	99.2
BBG10477.1\|1110018_1110267_+	phage protein	S4V683	Staphylococcus_phage	8.8e-41	97.6
BBG10478.1\|1110281_1110518_+	hypothetical protein	A1KX83	Staphylococcus_virus	1.1e-35	100.0
BBG10479.1\|1110522_1111056_+	dUTP pyrophosphatase	A0A059T5A7	Staphylococcus_phage	1.6e-95	100.0
BBG10480.1\|1111092_1111299_+	hypothetical protein	A0A0H3U2R7	Staphylococcus_phage	1.4e-20	76.5
BBG10481.1\|1111295_1111490_+	phage protein	A0A2I6PEC2	Staphylococcus_phage	6.0e-29	100.0
BBG10482.1\|1111486_1111690_+	hypothetical protein	A0A0N9BAX5	Staphylococcus_phage	5.2e-31	100.0
BBG10483.1\|1111682_1111919_+	hypothetical protein	Q4ZDP0	Staphylococcus_virus	2.8e-36	100.0
BBG10484.1\|1111911_1112085_+	transcriptional activator RinB	A0A0F6N3E7	Staphylococcus_phage	1.9e-21	98.2
BBG10485.1\|1112085_1112232_+	hypothetical protein	Q4ZDN7	Staphylococcus_virus	1.3e-15	100.0
BBG10486.1\|1112246_1112666_+	mobile-element-associated regulatory protein	I1W651	Staphylococcus_phage	8.1e-71	100.0
BBG10487.1\|1112852_1113293_+\|terminase	phage terminase small subunit	I1W650	Staphylococcus_phage	4.8e-74	100.0
BBG10488.1\|1113279_1114557_+\|terminase	phage terminase large subunit	A0EWS5	Staphylococcus_virus	3.0e-249	100.0
BBG10489.1\|1114567_1116103_+\|portal	phage portal protein	Q4ZDV9	Staphylococcus_virus	3.3e-287	98.8
BBG10490.1\|1116109_1117105_+\|head	phage head morphogenesis protein	S4V9L8	Staphylococcus_phage	5.8e-184	99.7
BBG10491.1\|1117177_1117348_+	hypothetical protein	B2ZYY3	Staphylococcus_phage	6.7e-24	100.0
BBG10492.1\|1117456_1118077_+	putative scaffolding protein	B2ZYY4	Staphylococcus_phage	6.6e-77	98.5
BBG10493.1\|1118090_1119065_+\|head	phage head protein	Q8SDU5	Staphylococcus_phage	1.3e-183	100.0
BBG10494.1\|1119086_1119374_+	phi Mu50B-like protein	Q8SDU4	Staphylococcus_phage	3.1e-45	98.9
BBG10495.1\|1119382_1119715_+\|head,tail	phage gp6-like head-tail connector family protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
BBG10496.1\|1119711_1120014_+	phage-like protein	A4ZFB6	Staphylococcus_virus	1.1e-50	100.0
BBG10497.1\|1120013_1120361_+	HK97 family phage protein	A0A0F6N3F5	Staphylococcus_phage	4.1e-60	100.0
BBG10498.1\|1120372_1120756_+	hypothetical protein	A0A0F6N3L1	Staphylococcus_phage	1.5e-68	100.0
BBG10499.1\|1120774_1121356_+\|tail	phage major tail protein	A0A0F6N3L8	Staphylococcus_phage	4.9e-106	100.0
BBG10500.1\|1121417_1121783_+	phage-like protein	A0A0F6N4J9	Staphylococcus_phage	3.6e-59	100.0
BBG10501.1\|1121812_1122157_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
BBG10502.1\|1122173_1125641_+	phage tape measure protein	A0A0F6N3F9	Staphylococcus_phage	9.3e-245	99.8
BBG10503.1\|1125653_1126601_+	phage protein	A0A0F6N3L4	Staphylococcus_phage	2.0e-181	99.4
BBG10504.1\|1126609_1128511_+	phi ETA ORF55-like protein	Q8SDT5	Staphylococcus_phage	0.0e+00	100.0
BBG10505.1\|1128525_1130436_+	phi ETA ORF56-like protein	Q4ZDL3	Staphylococcus_virus	0.0e+00	100.0
BBG10506.1\|1130435_1132259_+	phi ETA ORF57-like protein	W5R8J5	Staphylococcus_phage	7.4e-294	99.2
BBG10507.1\|1132258_1132636_+	SLT orf 129-like protein	Q9FZY7	Staphylococcus_virus	3.4e-60	99.2
BBG10508.1\|1132639_1132813_+	phi ETA ORF59-like protein	A0A0F6N3L7	Staphylococcus_phage	6.6e-27	100.0
BBG10509.1\|1132853_1133153_+	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
BBG10510.1\|1133289_1135188_+	phage N-acetylglucosamidase	Q8SDT1	Staphylococcus_phage	0.0e+00	99.8
BBG10511.1\|1135200_1136439_+\|tail	phage tail fiber	A0A0F6N3G7	Staphylococcus_phage	2.7e-207	98.1
BBG10512.1\|1136444_1136840_+	phi ETA orf 63-like protein	A0A0E3XBL9	Staphylococcus_phage	1.4e-67	97.7
BBG10513.1\|1136895_1137333_+\|holin	phage phi LC3 family holin	Q8SDS8	Staphylococcus_phage	6.9e-73	99.3
BBG10514.1\|1137313_1138759_+	N-acetylmuramoyl-L-alanine amidase	Q08JW9	Staphylococcus_phage	1.8e-295	99.8
BBG10515.1\|1139481_1140039_+	hypothetical protein	W5R8Q1	Staphylococcus_phage	5.7e-104	100.0

DBSCAN-SWA_5

1442507 : 1448198

Yellowstone_lake_phycodnavirus(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG10792.1\|1442507_1443773_+	diaminopimelate decarboxylase	A0A0P0YM38	Yellowstone_lake_phycodnavirus	6.2e-13	23.2
BBG10793.1\|1444012_1444414_-	modulator of SarA protein	NA	NA	NA	NA
BBG10794.1\|1444610_1444811_-	major cold shock protein CspA	Q9AZD3	Lactococcus_phage	8.4e-18	66.2
BBG10795.1\|1444981_1445290_-	DNA binding protein	NA	NA	NA	NA
BBG10796.1\|1445452_1445722_+	acylphosphatase	NA	NA	NA	NA
BBG10797.1\|1445782_1446370_+	hypothetical protein	NA	NA	NA	NA
BBG10798.1\|1446401_1447538_+	TelA-like protein	A0A291I9K4	Lactobacillus_phage	9.7e-34	28.5
BBG10799.1\|1447593_1447788_-\|transposase	transposase	Q9MBP7	Staphylococcus_prophage	2.6e-24	90.6
BBG10800.1\|1447805_1448198_-\|transposase	transposase	A0A146ICT8	Staphylococcus_phage	7.7e-15	93.2

DBSCAN-SWA_6

1529247 : 1616127

101

Staphylococcus_phage(70.13%)

portal,integrase,protease,holin,tail,capsid,tRNA,terminase

attL 1568755:1568772|attR 1614644:1614661

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG10850.1\|1529247_1530540_-\|tRNA	asparaginyl-tRNA synthetase	M1PB22	Moumouvirus	1.9e-54	31.1
BBG10851.1\|1530861_1533555_-	probable ATP-dependent helicase dinG homolog	A0A1X9I5C8	Streptococcus_phage	8.2e-47	34.4
BBG10852.1\|1533578_1534550_-	putative biotin ligase	NA	NA	NA	NA
BBG10853.1\|1534536_1535739_-	CCA-adding enzyme	H7BUW3	unidentified_phage	3.2e-35	42.5
BBG10854.1\|1535743_1536886_-	putative N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA
BBG10855.1\|1537127_1537445_-	MazG nucleotide pyrophosphohydrolase	NA	NA	NA	NA
BBG10856.1\|1537780_1538479_-	hypothetical protein	NA	NA	NA	NA
BBG10857.1\|1538532_1539120_-	hypothetical protein	NA	NA	NA	NA
BBG10858.1\|1539109_1539685_-	IDEAL domain protein	G3MAV7	Bacillus_virus	2.1e-08	27.2
BBG10859.1\|1539698_1540943_-	hypothetical protein	NA	NA	NA	NA
BBG10860.1\|1540949_1542248_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
BBG10861.1\|1542257_1543322_-	3-dehydroquinate synthase	NA	NA	NA	NA
BBG10862.1\|1543347_1544514_-	chorismate synthase	A0A291AU41	Pandoravirus	2.0e-34	32.1
BBG10863.1\|1544900_1545101_-	hypothetical protein	NA	NA	NA	NA
BBG10864.1\|1545310_1545760_-	nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	8.3e-29	44.5
BBG10865.1\|1545851_1546811_-	heptaprenyl diphosphate syntase component II	A0A1V0SE37	Indivirus	1.3e-10	24.4
BBG10866.1\|1546812_1547538_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
BBG10867.1\|1547540_1548113_-	hypothetical protein	NA	NA	NA	NA
BBG10868.1\|1548543_1548816_-	transcriptional regulator	A7KV42	Bacillus_phage	4.2e-28	73.3
BBG10869.1\|1548986_1549985_-	glycerol-3-phosphate dehydrogenase [NAD(P)+]	NA	NA	NA	NA
BBG10870.1\|1550001_1551312_-	GTPase Der	NA	NA	NA	NA
BBG10871.1\|1551533_1552709_-	30S ribosomal protein S1	NA	NA	NA	NA
BBG10872.1\|1553406_1554066_-	cytidylate kinase	NA	NA	NA	NA
BBG10873.1\|1554142_1555111_+	probable L-asparaginase	NA	NA	NA	NA
BBG10874.1\|1555225_1556212_-	putative Thioredoxin reductase	NA	NA	NA	NA
BBG10875.1\|1556613_1558074_-	elastin-binding protein	NA	NA	NA	NA
BBG10876.1\|1558226_1559606_-	probable ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	2.9e-56	33.6
BBG10877.1\|1559595_1560549_-	hypothetical protein	NA	NA	NA	NA
BBG10878.1\|1560656_1560905_+	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0
BBG10879.1\|1561010_1561556_-	hypothetical protein	NA	NA	NA	NA
BBG10880.1\|1561965_1562880_-	hypothetical protein	NA	NA	NA	NA
BBG10881.1\|1562936_1563854_-	hypothetical protein	NA	NA	NA	NA
BBG10882.1\|1563911_1564817_-	hypothetical protein	NA	NA	NA	NA
BBG10883.1\|1564907_1565093_-	hypothetical protein	A0ZS61	Staphylococcus_virus	1.7e-25	100.0
BBG10884.1\|1565337_1565793_-	hypothetical protein	B7T0L3	Staphylococcus_virus	2.7e-72	100.0
BBG10885.1\|1565789_1566377_-	hypothetical protein	Q4ZBG7	Staphylococcus_virus	3.0e-87	92.3
BBG10886.1\|1566768_1568223_-	amidase	B7T0L1	Staphylococcus_virus	3.1e-287	98.8
BBG10887.1\|1568233_1568536_-\|holin	phage holin	B7T0L0	Staphylococcus_virus	4.1e-48	100.0
BBG10888.1\|1568671_1568971_-	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
1568755:1568772	attL	NA	NA	NA	NA
BBG10889.1\|1569016_1569181_-	XkdX family phage protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
BBG10890.1\|1569173_1569563_-	SLT ORF129-like protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
BBG10891.1\|1569562_1571029_-	phage protein	A0A2I6PDE3	Staphylococcus_phage	7.1e-271	98.6
BBG10892.1\|1571028_1572939_-	lytic system protein	A0A2I6PDQ2	Staphylococcus_phage	0.0e+00	100.0
BBG10893.1\|1572954_1573245_-	hypothetical protein	A0A2I6PF46	Staphylococcus_phage	2.1e-49	100.0
BBG10894.1\|1573244_1574828_-	phiSLT ORF527-like protein	A0A2I6PDE4	Staphylococcus_phage	1.0e-307	99.8
BBG10895.1\|1574836_1575661_-\|holin	holin-like protein	A0A2I6PER3	Staphylococcus_phage	1.2e-158	99.6
BBG10896.1\|1575660_1581837_-	phage protein	A0A2I6PDS2	Staphylococcus_phage	0.0e+00	98.7
BBG10897.1\|1581850_1582009_-	predicted protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
BBG10898.1\|1582050_1582401_-	phiSLT ORF116b-like protein	A0A2I6PDE6	Staphylococcus_phage	1.1e-55	100.0
BBG10899.1\|1582458_1582914_-\|tail	major tail protein	Q9B0D4	Staphylococcus_phage	2.0e-75	97.4
BBG10900.1\|1583005_1583647_-\|tail	major tail protein	A0A2I6PEP6	Staphylococcus_phage	1.2e-118	97.7
BBG10901.1\|1583681_1584077_-	hypothetical protein	R4WAV1	Staphylococcus_phage	4.4e-66	99.2
BBG10902.1\|1584077_1584479_-	hypothetical protein	R4WAN5	Staphylococcus_phage	2.3e-67	99.2
BBG10903.1\|1584475_1584808_-	phiSLT ORF110-like protein	A0A2I6PES3	Staphylococcus_phage	4.1e-57	100.0
BBG10904.1\|1584819_1585098_-	DNA packaging protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
BBG10905.1\|1585166_1586330_-\|capsid	phage major capsid protein, HK97	A0A2I6PEQ3	Staphylococcus_phage	1.2e-217	100.0
BBG10906.1\|1586341_1587115_-\|protease	protease	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
BBG10907.1\|1587098_1588337_-\|portal	portal protein	A0A2I6PF26	Staphylococcus_phage	1.2e-234	100.0
BBG10908.1\|1588341_1590033_-\|terminase	terminase large subunit	Q4ZD20	Staphylococcus_virus	0.0e+00	100.0
BBG10909.1\|1590022_1590328_-\|terminase	terminase small subunit	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
BBG10910.1\|1590455_1590770_-	phage endonuclease	A0A2I6PF37	Staphylococcus_phage	2.5e-56	100.0
BBG10911.1\|1590926_1591364_-	phi SLT ORF145-like protein, phagetranscriptional regulator	A0A2I6PEN3	Staphylococcus_phage	7.9e-77	100.0
BBG10912.1\|1591376_1592735_-	SNF2 family N-domain protein	A0A1X9IH01	Staphylococcus_phage	3.1e-260	99.3
BBG10913.1\|1592724_1593015_-	phi related protein	A0A2I6PDQ7	Staphylococcus_phage	4.9e-51	100.0
BBG10914.1\|1593355_1595803_-	virulence-associated E family protein	A0A2I6PDP5	Staphylococcus_phage	0.0e+00	99.6
BBG10915.1\|1595854_1596055_-	hypothetical protein	Q9B0E8	Staphylococcus_virus	6.5e-26	98.5
BBG10916.1\|1596122_1596275_-	transcriptional activator RinB	A7TWI2	Staphylococcus_phage	2.6e-19	100.0
BBG10917.1\|1596271_1596478_-	hypothetical protein	A0A1X9H0C2	Staphylococcus_phage	1.3e-21	100.0
BBG10918.1\|1596514_1597051_-	dimeric dUTPase	A0A1X9H0S5	Staphylococcus_phage	2.1e-95	99.4
BBG10919.1\|1597043_1597214_-	hypothetical protein	A0A1W6JQ22	Staphylococcus_phage	5.7e-23	100.0
BBG10920.1\|1597200_1597455_-	hypothetical protein	A1KX83	Staphylococcus_virus	2.7e-37	95.2
BBG10921.1\|1597646_1597973_-	hypothetical protein	A0A1X9H0D4	Staphylococcus_phage	2.8e-55	95.4
BBG10922.1\|1597999_1598149_-	hypothetical protein	A1KX82	Staphylococcus_virus	2.2e-15	89.4
BBG10923.1\|1598163_1598406_-	pahge ORF51-like protein	A0A0F6N3E1	Staphylococcus_phage	6.2e-39	96.2
BBG10924.1\|1598411_1598666_-	phage protein	A0A2I6PF10	Staphylococcus_phage	3.7e-42	100.0
BBG10925.1\|1598665_1599067_-	DNA-binding protein	A7TWG8	Staphylococcus_phage	9.5e-69	100.0
BBG10926.1\|1599066_1599252_-	phiSLT ORF65-like protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
BBG10927.1\|1599264_1601226_-	DNA polymerase	A0A2I6PF18	Staphylococcus_phage	0.0e+00	98.5
BBG10928.1\|1601285_1601843_-	phage protein	A0A2K9VBT2	Staphylococcus_phage	1.8e-97	100.0
BBG10929.1\|1601868_1603035_-	phage protein	Q8SDR9	Staphylococcus_virus	1.3e-214	97.7
BBG10930.1\|1603031_1603394_-	hypothetical protein	A0A2I6PF03	Staphylococcus_phage	4.9e-56	100.0
BBG10931.1\|1603408_1603732_-	phage protein	A0A2I6PF12	Staphylococcus_phage	5.9e-53	100.0
BBG10932.1\|1603810_1603972_-	phage protein	A0A2I6PEZ9	Staphylococcus_phage	5.0e-21	100.0
BBG10933.1\|1603984_1604248_-	phi PVL ORF37-like protein	A0A2I6PDM6	Staphylococcus_phage	1.4e-44	98.9
BBG10934.1\|1604272_1604488_-	SLT ORF71-like protein-related protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
BBG10935.1\|1604542_1604908_+	phage protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
BBG10936.1\|1604876_1605122_-	phage protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
BBG10937.1\|1605177_1605387_+	hypothetical protein	W5R9J5	Staphylococcus_phage	1.2e-30	100.0
BBG10938.1\|1605376_1605520_-	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
BBG10939.1\|1605548_1606325_-	antirepressor	A0A2I6PD87	Staphylococcus_phage	1.1e-140	100.0
BBG10940.1\|1606338_1606575_-	hypothetical protein	A0A2I6PD81	Staphylococcus_phage	1.5e-37	100.0
BBG10941.1\|1606726_1607041_+	helix-turn-helix domain-containing protein	A0A0N9BAW4	Staphylococcus_phage	9.8e-53	100.0
BBG10942.1\|1607053_1607515_+	phage protein	A0A2K9VBR7	Staphylococcus_phage	1.2e-83	100.0
BBG10943.1\|1607532_1608117_+	hypothetical protein	A0A2I6PD77	Staphylococcus_phage	1.4e-68	100.0
BBG10944.1\|1608367_1608493_+	phage protein	Q4ZCR4	Staphylococcus_virus	1.6e-11	97.6
BBG10945.1\|1608489_1609104_-	Na/K ATPase	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
BBG10946.1\|1609229_1610435_+\|integrase	integrase	A0A2I6PEZ6	Staphylococcus_phage	1.6e-223	100.0
BBG10947.1\|1610477_1612505_-	hypothetical protein	B5WZK7	Staphylococcus_phage	1.2e-111	95.3
BBG10948.1\|1612516_1613425_-	hypothetical protein	NA	NA	NA	NA
BBG10949.1\|1613669_1615421_-	staphylococcal respiratory response protein SrrB	A0A1V0SGX0	Hokovirus	1.7e-21	33.6
1614644:1614661	attR	NA	NA	NA	NA
BBG10950.1\|1615401_1616127_-	staphylococcal respiratory response protein SrrA	W8CYM9	Bacillus_phage	3.5e-45	43.0

DBSCAN-SWA_7

1671248 : 1679578

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG11014.1\|1671248_1672016_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.8e-19	28.3
BBG11015.1\|1672159_1673050_-	probable endonuclease 4	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
BBG11016.1\|1673059_1674406_-	hypothetical protein	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
BBG11017.1\|1674519_1675620_-	hypothetical protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
BBG11018.1\|1675622_1676300_-	hypothetical protein	NA	NA	NA	NA
BBG11019.1\|1676430_1677537_-	RNA polymerase sigma factor A	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
BBG11020.1\|1677760_1679578_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.9e-54	36.0

DBSCAN-SWA_8

1723297 : 1788637

uncultured_Mediterranean_phage(15.79%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG11068.1\|1723297_1724566_-\|protease	protease	Q6DW11	Phage_TP	4.0e-36	31.7
BBG11069.1\|1724577_1725501_-\|protease	protease	NA	NA	NA	NA
BBG11070.1\|1725503_1726142_-	putative caffeoyl-CoA O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	1.6e-09	28.8
BBG11071.1\|1726426_1726735_-	YrzB like protein	NA	NA	NA	NA
BBG11072.1\|1726749_1727178_-	Holliday junction resolvase-like protein	NA	NA	NA	NA
BBG11073.1\|1727181_1727442_-	putative cytosolic protein	NA	NA	NA	NA
BBG11074.1\|1727504_1730135_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-64	34.4
BBG11075.1\|1730477_1732955_-	putative deoxyribonuclease	A0A0K2FLP8	Brevibacillus_phage	1.1e-66	29.0
BBG11076.1\|1732956_1733625_-	hypothetical protein	NA	NA	NA	NA
BBG11077.1\|1734205_1735324_-	thiouridylase	NA	NA	NA	NA
BBG11078.1\|1735324_1736467_-	iron-sulfur cofactor synthesis protein homolog	A0A1X7QGF3	Faustovirus	5.4e-32	30.8
BBG11079.1\|1736778_1737792_+	hypothetical protein	NA	NA	NA	NA
BBG11080.1\|1738028_1738175_-	hypothetical protein	NA	NA	NA	NA
BBG11081.1\|1738214_1738397_-	CsbD-like family protein	NA	NA	NA	NA
BBG11082.1\|1738496_1738919_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
BBG11083.1\|1739003_1740278_+	putative ATPase	A0A127AWE7	Bacillus_phage	1.8e-105	50.7
BBG11084.1\|1740438_1741212_-	putative molybdopterin biosynthesis MoeB protein	NA	NA	NA	NA
BBG11085.1\|1741672_1743439_-\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	1.3e-16	27.3
BBG11086.1\|1743454_1744717_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
BBG11087.1\|1745176_1746052_-	probable cell wall amidase LytH	A0A0N9SGH1	Paenibacillus_phage	4.7e-12	33.7
BBG11088.1\|1746048_1746501_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
BBG11089.1\|1746512_1748702_-	GTP pyrophosphokinase	A0A2I2L310	Orpheovirus	6.9e-12	37.7
BBG11090.1\|1749129_1749648_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
BBG11091.1\|1749669_1751943_-	putative single-strand DNA-specific exonuclease	A7KV88	Bacillus_phage	3.1e-63	29.1
BBG11092.1\|1752145_1754425_-	protein-export membrane protein SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
BBG11093.1\|1754699_1754960_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
BBG11094.1\|1754978_1756118_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
BBG11095.1\|1756140_1757166_-\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
BBG11096.1\|1757167_1758172_-	Holliday junction ATP-dependent DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
BBG11097.1\|1758203_1758806_-	Holliday junction ATP-dependent DNA helicase RuvA	NA	NA	NA	NA
BBG11098.1\|1758819_1759275_-	putative chorismate mutase	NA	NA	NA	NA
BBG11099.1\|1759287_1760580_-	Spo0B-associated GTP-binding protein	NA	NA	NA	NA
BBG11100.1\|1761064_1761349_-	50S ribosomal protein L27	NA	NA	NA	NA
BBG11101.1\|1761360_1761681_-	YsxB like protein	NA	NA	NA	NA
BBG11102.1\|1761686_1761995_-	50S ribosomal protein L21	NA	NA	NA	NA
BBG11103.1\|1762482_1763013_-	putative cell shape determinant MreD	NA	NA	NA	NA
BBG11104.1\|1763012_1763855_-	rod shape-determining protein MreC	NA	NA	NA	NA
BBG11105.1\|1764246_1764720_-	hypothetical protein	NA	NA	NA	NA
BBG11106.1\|1764879_1765077_+	hypothetical protein	NA	NA	NA	NA
BBG11107.1\|1765193_1765478_-	hypothetical protein	NA	NA	NA	NA
BBG11108.1\|1765926_1766589_-	hypothetical protein	NA	NA	NA	NA
BBG11109.1\|1767097_1767829_+	rRNA adenine N-6-methyltransferase	E4ZFQ0	Streptococcus_phage	1.9e-51	47.5
BBG11110.1\|1767954_1768737_-	streptomycin 3''-adenylyltransferase	NA	NA	NA	NA
BBG11111.1\|1768887_1769265_-\|transposase	transposase C for transposon Tn554	NA	NA	NA	NA
BBG11112.1\|1769271_1771164_-\|transposase	transposase B for transposon Tn554	NA	NA	NA	NA
BBG11113.1\|1771160_1772246_-\|transposase	transposase A for transposon Tn554	A0A0A8WIF9	Clostridium_phage	4.5e-12	28.3
BBG11114.1\|1772364_1772919_-	DNA repair protein RadC homolog	NA	NA	NA	NA
BBG11115.1\|1772915_1773479_-	hypothetical protein	NA	NA	NA	NA
BBG11116.1\|1773892_1775164_-	folylpolyglutamate synthase	NA	NA	NA	NA
BBG11117.1\|1775176_1777807_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	3.7e-153	40.7
BBG11118.1\|1778209_1778770_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
BBG11119.1\|1778992_1780066_-	hypothetical protein	NA	NA	NA	NA
BBG11120.1\|1780261_1781548_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
BBG11121.1\|1781595_1782570_-	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA
BBG11122.1\|1782572_1783241_-	uroporphyrinogen III synthase	NA	NA	NA	NA
BBG11123.1\|1783262_1784189_-	porphobilinogen deaminase	NA	NA	NA	NA
BBG11124.1\|1784230_1785046_-	HemA concentration negative effector	NA	NA	NA	NA
BBG11125.1\|1785067_1786414_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
BBG11126.1\|1786630_1787221_-	probable GTP-binding protein EngB	NA	NA	NA	NA
BBG11127.1\|1787374_1788637_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.9e-140	62.0

DBSCAN-SWA_9

1888972 : 1966475

Staphylococcus_phage(94.92%)

bacteriocin,integrase,protease,transposase,tRNA

attL 1918654:1918670|attR 1937982:1937998

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBG11206.1\|1888972_1895500_-	hypothetical protein	A0A2H4PQU6	Staphylococcus_phage	1.4e-297	91.5
BBG11207.1\|1895825_1896137_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
BBG11208.1\|1896158_1898579_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.7
BBG11209.1\|1898869_1900051_-	multidrug resistance protein homolog	A0A2H4PQR6	Staphylococcus_phage	6.2e-217	99.7
BBG11210.1\|1900160_1901114_+	putative Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
BBG11211.1\|1901110_1901674_+	putative SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
BBG11212.1\|1901793_1902195_-	HTH-type transcriptional regulator Rot	NA	NA	NA	NA
BBG11213.1\|1902768_1903596_-	lysophospholipase homolog	NA	NA	NA	NA
BBG11214.1\|1903829_1904831_+	proline dehydrohenase homolog	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
BBG11215.1\|1904952_1905417_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
BBG11216.1\|1905429_1906611_-	riboflavin biosynthesis protein RibA	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
BBG11217.1\|1906621_1907254_-	riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	6.4e-112	99.0
BBG11218.1\|1907260_1908304_-	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	8.2e-197	99.4
BBG11219.1\|1908784_1910287_-	hypothetical protein	A0A2H4PQX2	Staphylococcus_phage	1.5e-29	98.6
BBG11220.1\|1910809_1911124_+	arsenical resistance operon repressor	A0A2H4PQT4	Staphylococcus_phage	2.0e-53	100.0
BBG11221.1\|1911123_1912416_+	arsenic efflux pump protein	A0A2H4PQU3	Staphylococcus_phage	1.9e-227	99.5
BBG11222.1\|1912502_1913357_-	4 N-acetylmuramoyl-L-alanine amidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
BBG11223.1\|1913632_1913857_-	hypothetical protein	NA	NA	NA	NA
BBG11224.1\|1914055_1914526_+	putative RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
BBG11225.1\|1914638_1915082_+	ComK family protein	NA	NA	NA	NA
BBG11226.1\|1915068_1915512_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
BBG11227.1\|1915807_1916443_+	hypothetical protein	NA	NA	NA	NA
BBG11228.1\|1916882_1917596_-	hypothetical protein	M1PR54	Cyanophage	5.5e-19	35.3
BBG11229.1\|1917855_1918158_+	membrane protein	NA	NA	NA	NA
BBG11230.1\|1918413_1918779_+	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
1918654:1918670	attL	NA	NA	NA	NA
BBG11231.1\|1918775_1919129_+	CrcB-like protein	A0A2H4PQQ7	Staphylococcus_phage	2.0e-22	98.3
BBG11232.1\|1919320_1919500_+	hypothetical protein	NA	NA	NA	NA
BBG11233.1\|1919511_1920345_-	plant metabolite dehydrogenase homolog	A0A2H4PQR8	Staphylococcus_phage	5.4e-159	100.0
BBG11234.1\|1920556_1921465_-	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	1.7e-137	99.0
BBG11235.1\|1921589_1922783_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
BBG11236.1\|1923154_1924747_+	phosphoenolpyruvate carboxykinase [ATP]	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
BBG11237.1\|1925124_1925895_-	hypothetical protein	A0A2H4PQM6	Staphylococcus_phage	2.3e-143	99.2
BBG11238.1\|1925875_1926349_-	putative phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	7.2e-84	98.7
BBG11239.1\|1926414_1926672_+	membrane protein	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
BBG11240.1\|1926668_1927670_-	O-succinylbenzoic acid synthetase	A0A2H4PQM0	Staphylococcus_phage	5.3e-185	97.6
BBG11241.1\|1927674_1929153_-	2-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.6e-281	97.0
BBG11242.1\|1929518_1929794_-	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	1.0e-37	98.7
BBG11243.1\|1930105_1930720_+	hypothetical protein	A0A2H4PQM8	Staphylococcus_phage	1.1e-47	98.5
BBG11244.1\|1930800_1931796_+	hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	4.2e-73	97.2
BBG11245.1\|1931869_1932496_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.6e-91	94.7
BBG11246.1\|1932536_1932878_+	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	8.1e-53	92.0
BBG11247.1\|1932978_1933551_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.3e-22	89.7
BBG11248.1\|1933838_1934306_-	hypothetical protein	A0A2H4PQN8	Staphylococcus_phage	3.3e-65	100.0
BBG11249.1\|1934679_1934856_-	hypothetical protein	NA	NA	NA	NA
BBG11250.1\|1934932_1935250_-	hypothetical protein	NA	NA	NA	NA
BBG11251.1\|1935441_1935651_-\|integrase	integrase core domain protein	A0A2H4PQV6	Staphylococcus_phage	1.4e-31	100.0
BBG11252.1\|1935853_1935997_-\|transposase	transposase family protein	A0A2H4PQU1	Staphylococcus_phage	6.4e-20	100.0
BBG11253.1\|1936866_1937244_-	hypothetical protein	NA	NA	NA	NA
BBG11254.1\|1937764_1941877_-	hypothetical protein	A0A2H4PQT3	Staphylococcus_phage	0.0e+00	100.0
1937982:1937998	attR	NA	NA	NA	NA
BBG11255.1\|1942726_1943926_-	type I restriction modification DNA specificity domain protein	A0A2H4PQP5	Staphylococcus_phage	1.6e-228	99.7
BBG11256.1\|1943918_1945475_-	type I restriction enzyme EcoR124II M protein homolog	A0A2H4PQP4	Staphylococcus_phage	1.6e-289	100.0
BBG11257.1\|1945837_1946557_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.1e-131	100.0
BBG11258.1\|1946707_1947424_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
BBG11259.1\|1947581_1948301_-\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	1.7e-129	99.2
BBG11260.1\|1948421_1949141_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	3.2e-131	99.6
BBG11261.1\|1949198_1949921_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	6.4e-132	100.0
BBG11262.1\|1950045_1950753_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.7e-130	99.6
BBG11263.1\|1951716_1952283_+	putative beta-lactamase	A0A2H4PQH6	Staphylococcus_phage	3.3e-99	100.0
BBG11264.1\|1952756_1953455_-	lantibiotic ABC transporter protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
BBG11265.1\|1953506_1953851_+	hypothetical protein	NA	NA	NA	NA
BBG11266.1\|1954209_1954902_-	lantibiotic immunity protein F	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
BBG11267.1\|1954924_1956298_-\|protease	lantibiotic leader peptide processing serine protease	A0A2H4PQH1	Staphylococcus_phage	2.9e-258	100.0
BBG11268.1\|1956307_1956826_-	lantibiotic modifying enzyme	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
BBG11269.1\|1956841_1958086_-	lanthionine synthetase C-like family protein	A0A2H4PQH9	Staphylococcus_phage	5.1e-238	100.0
BBG11270.1\|1958078_1961072_-\|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	97.1
BBG11271.1\|1961136_1961280_-	lantibiotic protein	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
BBG11272.1\|1962016_1962160_-	lantibiotic protein	NA	NA	NA	NA
BBG11273.1\|1962401_1963385_-	leukocidin D component	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
BBG11274.1\|1963386_1964322_-	leukocidin E component	A0A2H4PQI5	Staphylococcus_phage	6.7e-174	99.7
BBG11275.1\|1965218_1965674_+	hypothetical protein	Q4ZCB9	Staphylococcus_virus	6.3e-61	76.2
BBG11276.1\|1965686_1966475_+	hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	5.3e-140	95.8

DBSCAN-SWA_10

2089869 : 2144520

Staphylococcus_phage(100.0%)

portal,integrase,head,protease,holin,tail,capsid,terminase

attL 2082993:2083008|attR 2151074:2151089

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2082993:2083008	attL	NA	NA	NA	NA
BBG11390.1\|2089869_2090067_+	truncated beta-hemolysin	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
BBG11391.1\|2090438_2090618_+	phage protein	A0A1W6JQ29	Staphylococcus_phage	1.4e-24	98.3
BBG11392.1\|2091241_2091592_-	complement inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
BBG11393.1\|2092103_2092400_-	amidase	A0A1P8L6B4	Staphylococcus_phage	1.6e-49	95.9
BBG11394.1\|2093089_2093581_-	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	4.7e-86	99.4
BBG11395.1\|2093771_2094527_-	Lytic enzyme	D2JLG5	Staphylococcus_phage	9.9e-152	99.6
BBG11396.1\|2094538_2094793_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
BBG11397.1\|2095000_2095135_-	bacteriophage	D2JLG3	Staphylococcus_phage	9.3e-13	100.0
BBG11398.1\|2095285_2096059_-	staphylococcal enterotoxin A	A0A1X9H080	Staphylococcus_phage	1.1e-145	100.0
BBG11399.1\|2096431_2096806_-	phage protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
BBG11400.1\|2096861_2097149_-	phage protein	A0A1X9H0N7	Staphylococcus_phage	7.6e-44	100.0
BBG11401.1\|2097194_2097347_-	phage protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
BBG11402.1\|2097339_2101122_-	hypothetical protein	A0A1X9H096	Staphylococcus_phage	0.0e+00	99.4
BBG11403.1\|2101137_2102628_-\|tail	phage tail protein	R9QST9	Staphylococcus_phage	3.1e-298	100.0
BBG11404.1\|2102627_2107277_-\|tail	phage tail length tape-measure protein	A0A1V0E5H1	Staphylococcus_phage	0.0e+00	94.7
BBG11405.1\|2107514_2107961_-	phi PVL ORF14-like protein	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
BBG11406.1\|2108025_2108979_-\|tail	phage major tail, phi13 family protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
BBG11407.1\|2108979_2109360_-	phi PVL ORF12-like protein	D2JLF3	Staphylococcus_phage	2.2e-67	99.2
BBG11408.1\|2109356_2109734_-	HK97 gp10 family phage protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
BBG11409.1\|2109733_2110066_-\|head,tail	phage head-tail joining family protein	D2JLF1	Staphylococcus_phage	4.3e-59	100.0
BBG11410.1\|2110055_2110388_-	phage DNA packaging protein	D2JLF0	Staphylococcus_phage	2.1e-58	100.0
BBG11411.1\|2110396_2110555_-	bacteriophage	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
BBG11412.1\|2110590_2111838_-\|capsid	capsid protein	A7TWC4	Staphylococcus_phage	5.0e-209	100.0
BBG11413.1\|2111925_2112510_-\|head,protease	caudovirus prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
BBG11414.1\|2112502_2113753_-\|portal	portal protein	D2JLE6	Staphylococcus_phage	4.4e-237	100.0
BBG11415.1\|2113758_2113959_-	phi PVL ORF3-like protein	A0A1P8L6D3	Staphylococcus_phage	5.8e-27	100.0
BBG11416.1\|2113972_2115667_-\|terminase	terminase-large subunit	D2JLE4	Staphylococcus_phage	0.0e+00	100.0
BBG11417.1\|2115669_2116137_-\|terminase	phage terminase-small subunit	D2JLE3	Staphylococcus_phage	1.1e-81	100.0
BBG11418.1\|2116265_2116619_-	phage endonuclease	D2JLE2	Staphylococcus_phage	1.3e-66	100.0
BBG11419.1\|2116625_2117078_-	hypothetical protein	D2JLE1	Staphylococcus_phage	1.4e-79	100.0
BBG11420.1\|2117192_2117663_-	phage protein	D2JLE0	Staphylococcus_phage	1.7e-69	99.3
BBG11421.1\|2117685_2117886_-	phage protein	A0A2I6PDV9	Staphylococcus_phage	4.0e-28	98.5
BBG11422.1\|2117885_2118536_-	hypothetical protein	D2JLD8	Staphylococcus_phage	8.9e-117	100.0
BBG11423.1\|2118542_2118695_-	hypothetical protein	A0A2I6PDV2	Staphylococcus_phage	5.4e-17	100.0
BBG11424.1\|2118694_2118844_-	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	1.1e-17	98.0
BBG11425.1\|2118857_2119172_-	phage protein	A0A2I6PDG3	Staphylococcus_phage	8.0e-31	98.5
BBG11426.1\|2119184_2119589_-	endodeoxyribonuclease RusA family protein	A0A0H3U2W2	Staphylococcus_phage	6.9e-67	91.0
BBG11427.1\|2119597_2119816_-	phage protein	A0A1P8L6E4	Staphylococcus_phage	4.0e-37	98.6
BBG11428.1\|2119822_2120704_-	primosome subunit DnaD	A0A0E3TAG7	Staphylococcus_phage	4.9e-134	96.6
BBG11429.1\|2120733_2121204_-	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	7.7e-78	96.2
BBG11430.1\|2121204_2121690_-	beta-lactamase superfamily domain protein	A0A1W6JPL3	Staphylococcus_phage	1.4e-85	98.1
BBG11431.1\|2121902_2122823_-	recombinase, phage RecT family protein	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
BBG11432.1\|2122824_2124774_-	phage protein	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	98.8
BBG11433.1\|2124776_2125040_-	phage protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
BBG11434.1\|2125048_2125309_-	phage protein	A0A2I6PDH1	Staphylococcus_phage	2.6e-43	100.0
BBG11435.1\|2125401_2125563_-	phi PVL ORF38-like protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
BBG11436.1\|2125559_2125880_-	phage protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
BBG11437.1\|2125938_2126571_+	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
BBG11438.1\|2126585_2126726_-	phage protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
BBG11439.1\|2126756_2126954_-	phage protein	A0A1W6JPV3	Staphylococcus_phage	1.2e-24	100.0
BBG11440.1\|2126969_2127719_-	phage anti repressor	Q8SDM9	Staphylococcus_phage	4.4e-136	99.6
BBG11441.1\|2127775_2128315_+	phage protein	A7TW92	Staphylococcus_phage	1.7e-97	100.0
BBG11442.1\|2128338_2128599_-	transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
BBG11443.1\|2128616_2128841_-	regulatory protein	A7TW90	Staphylococcus_phage	4.5e-36	100.0
BBG11444.1\|2128999_2129770_+	phage repressor	A0A1P8L6G7	Staphylococcus_phage	6.2e-141	100.0
BBG11445.1\|2129965_2130694_+	staphylococcal enterotoxin Q	A0EX09	Staphylococcus_phage	2.3e-28	34.9
BBG11446.1\|2130717_2131446_+	staphylococcal enterotoxin K	A0EX09	Staphylococcus_phage	6.4e-23	32.3
BBG11447.1\|2131529_2132567_+\|integrase	integrase	E9LT82	Staphylococcus_phage	2.6e-195	100.0
BBG11448.1\|2132623_2133448_+	phospholipase C	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
BBG11449.1\|2133685_2134702_-	leukocidin F subunit	A0A2I6PER8	Staphylococcus_phage	2.3e-26	29.3
BBG11450.1\|2134723_2135776_-	leukocidin S subunit	A0A2I6PDF3	Staphylococcus_phage	1.6e-35	32.1
BBG11451.1\|2136211_2137435_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
BBG11452.1\|2137806_2138652_-	tetracenomycin polyketide synthesis O-methyltransferase TcmP	NA	NA	NA	NA
BBG11453.1\|2138713_2139625_-	ferric hydroxamate receptor 1	NA	NA	NA	NA
BBG11454.1\|2139785_2141093_+	H(+)-transporting two-sector ATPase	NA	NA	NA	NA
BBG11455.1\|2141937_2142381_-	acetyltransferase, GNAT family protein	NA	NA	NA	NA
BBG11456.1\|2142486_2143005_-	hypothetical protein	NA	NA	NA	NA
BBG11457.1\|2143240_2143831_-\|terminase	bacteriophage terminase small subunit	Q4ZE85	Staphylococcus_phage	1.2e-96	94.7
BBG11458.1\|2143827_2144043_-	hypothetical protein	Q4ZE86	Staphylococcus_phage	1.1e-23	74.3
BBG11459.1\|2144172_2144520_+\|integrase	truncated integrase	A0A1W6JPB2	Staphylococcus_phage	6.4e-29	84.9
2151074:2151089	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. AP018923

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection