CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP032869	Mucilaginibacter sp. HYN0043 chromosome, complete genome	10 crisprs	csa3,WYL,DEDDh,cas3	0	8	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP032869_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032869_1

615818-615913

Orphan

Consensus_repeat	Method
AAAGGGGGAATCAAATCGAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032869_1

>merge|CP032869|1|615818-615913|CRISPRCasFinder
AAAGGGGGAATCAAATCGAAAAAATATGTGGGGGGGATTTCTATTGGTTTTGGTGGTGAGGGGGGGAAGATAAAAGGGGGGATCAAATCGAAAAAA

>CP032869|1|1|615818-615913|CRISPRCasFinder
AAAGGGGGAATCAAATCGAAAAAA	TATGTGGGGGGGATTTCTATTGGTTTTGGTGGTGAGGGGGGGAAGATA
AAAGGGGGGATCAAATCGAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP032869.1\|AYL94233.1\|612517_612721_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94232.1\|612006_612450_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94230.1\|609456_609900_+\|DUF1304-family-protein	unknown	unknown	gnl\|CDD\|377753
CP032869.1\|AYL94242.1\|625342_626335_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94234.1\|616996_617428_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94226.1\|607120_607699_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94237.1\|619829_621560_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94229.1\|608987_609191_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|106506
CP032869.1\|AYL94236.1\|619128_619803_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94243.1\|626327_628304_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197271
CP032869.1\|AYL94238.1\|622054_622639_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94240.1\|623839_624103_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL99290.1\|614379_615669_-\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|224777
CP032869.1\|AYL94241.1\|624092_624794_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL99289.1\|612811_613645_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94228.1\|608422_608908_+\|protease	unknown	unknown	unknown
CP032869.1\|AYL94239.1\|622849_623770_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211382
CP032869.1\|AYL94231.1\|610321_611113_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369881
CP032869.1\|AYL94227.1\|607763_607991_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94235.1\|617780_619127_+\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|366523

Protein	Function_ID	Function_description	E-value
CP032869.1\|AYL94243.1\|626327_628304_-\|hypothetical-protein	gnl\|CDD\|197271	cd09174, PLDc_Nuc_like_unchar2, Putative catalytic domain of uncharacterized hypothetical proteins closely related to Nuc, , an endonuclease from Salmonella typhimurium. Putative catalytic domain of uncharacterized hypothetical proteins, which show high sequence homology to the endonuclease from Salmonella typhimurium and vertebrate phospholipase D6. Nuc and PLD6 belong to the phospholipase D (PLD) superfamily. They contain a short conserved sequence motif, the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), which characterizes the PLD superfamily and is essential for catalysis. Nuc and PLD6 utilize a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit. However, proteins in this subfamily have two HKD motifs in a single polypeptide chain.	7.35207e-30
CP032869.1\|AYL94230.1\|609456_609900_+\|DUF1304-family-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	2.34654e-10
CP032869.1\|AYL94235.1\|617780_619127_+\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|366523	pfam01223, Endonuclease_NS, DNA/RNA non-specific endonuclease.	2.91627e-23
CP032869.1\|AYL94239.1\|622849_623770_+\|hypothetical-protein	gnl\|CDD\|211382	cd11010, S1-P1_nuclease, S1/P1 nucleases and related enzymes. This family summarizes both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. S1 nuclease is more active on DNA than RNA. Its reaction products are oligonucleotides or single nucleotides with 5' phosphoryl groups. Although its primary substrate is single-stranded, it may also introduce single-stranded breaks in double-stranded DNA or RNA, or DNA-RNA hybrids. It is used as a reagent in nuclease protection assays and in removing single stranded tails from DNA molecules to create blunt ended molecules and opening hairpin loops generated during synthesis of double stranded cDNA. P1 nuclease cleaves its substrate at every position yielding nucleoside 5' monophosphates, and it does not recognize or act on double-stranded DNA. It is useful at removing single stranded strands hanging off the end of double stranded DNA and at completely cleaving melted DNA for simple DNA composition analysis.	2.54767e-37
CP032869.1\|AYL94231.1\|610321_611113_-\|hypothetical-protein	gnl\|CDD\|369881	pfam08447, PAS_3, PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.	8.08597e-10
CP032869.1\|AYL94229.1\|608987_609191_+\|hypothetical-protein	gnl\|CDD\|106506	PRK13560, PRK13560, hypothetical protein; Provisional.	0.00122589
CP032869.1\|AYL99290.1\|614379_615669_-\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|224777	COG1864, NUC1, DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism].	4.98062e-62

>CP032869.1|AYL99290.1|614379_615669_-|DNA/RNA-non-specific-endonuclease
MIRTFLLLSVLTLSAWHKPQTDELREDFGKGSKTAYAPGAVTFSSGTWYLADALTDKNAVRIRNNGRLSMTFDFNGEARTLEVSYAAYGTDENSGFQVWYSTDQGKSYRQTGTLRSTQGSTKRSTTFSTNIKGPVRFELRKVSGGKNRILISKFAINAHAQTSAQASSSTLPLKGNYNYDNSNLLLGNPSHANTDLNTPDNYLIDRSYYISSYNKSRGCPNWVSWHIGKNDFGSADRQNDFRADATLPAGWYHVDDTDYKNSGFDKGHNCPSADRTSTTAANSATFLMDNMMPQAPNNNQKTWEHLEAYCRDQVKAGMEVYVIAGSYGSGGYGRNGYFKTIAGGKVTVPSNIWKVVVIIPEGDHDLQRINTKTRVIAVNTPNDNIITPNWMNYTCTVRDIEKATGYDLLSALPKPVQDVVETVKFKGGN
>CP032869.1|AYL99289.1|612811_613645_-|hypothetical-protein
MLKSLALTISLTALSSISKAQVDTIFSNNTKIACTVKEITPDAVKYSYPGEDLLNSVYKGTIQKIVFKSGRVQTFAEATSYKTVSGVMDYDKVTITVVESEVKGLYKLTDVSSKAKGTTVFSNQERVKDRAYHKMKIQAAMFGANIVYLTNQRTEGNKYGGYWQSGSTAETNLTGVGYSNILPDYEKFKQLIGTKTDFVATKKFELGASDTDVSQDIIDKPFTISNVNIESGIVLITAQLKGENNNSIFQLANFTDNSFSVAYKHKGTAYNIEVKVK
>CP032869.1|AYL94233.1|612517_612721_-|hypothetical-protein
MDKQTQRENLLREEGKLLKVIEEYQQEIDGFTSDLNHVRRLLTELDGGVNDNAWKEYTKIIQAESDD
>CP032869.1|AYL94232.1|612006_612450_+|hypothetical-protein
MKKKSPLYFEITDAYDIVRVTVKGPTKKSTKVVNNKGWLDIDITVKGCTLGGSYHAEFLPISFHSFRQQLVSLMYGLDKTAAFDGVMGYLKLEFEVKYEGFAEIKVRACDVPGIGSELTFKMSIQLSDVNELVLQLDSILSRYPLLN
>CP032869.1|AYL94231.1|610321_611113_-|hypothetical-protein
MLKQIVITNRNNYLAFLFADPIMNNNTSLSFVLLIKSLSVGSLLQNILFYTFILLLLSINIFLIRRKRSVSTNKLSDTDHIKTDQNTAEKEHPSYEDIYERSKDLEVENAFLKAEVLALGEELELSYHKSDKLNEQLADILGCLDLTLSYDEQLWDWSIDLSTNELCLSEYGLRIRGYKPGTKLTWIEGLNIVSDEHRKQVETALTISLNTGADFSMVYKINPIDGGYERWVRSFGKIIFGTDGAPLRLQGKFTFTSNNQIKT
>CP032869.1|AYL94230.1|609456_609900_+|DUF1304-family-protein
MNRSMHMNRTTKILVAIVIIVHFLFFLLEAVLWMQPLVNEPLLLLLNNPVSSSFELQAVTLRNLFINQGFYNLFIMFAGVSGMALVTRRKYSSGYALILFLCFCGTGAGIVLACSTKAYLLAAGQALPALIAFIKIYPLYNRSIDLR
>CP032869.1|AYL94229.1|608987_609191_+|hypothetical-protein
MIISFRNHTVAEDAAPYDTLLIANNGIGMPEEFDLGGHNLLGMGLMRRLSGQIQGDLGICNGMVRPY
>CP032869.1|AYL94228.1|608422_608908_+|protease
MTAAAVLAAGCHSQKPIVVQGNSGNNALSGAEILSVRLGSTSVRNTADSVGVSFTVSNNTDSPVRFCKWETPFEPRLGKYFEVSDDKGNEAAFKGAMARRVMPPPAEAYIVVAAHDSVNTSVNLAKNYSIQTGKYTVKYVGGGVSGLRSGNTISVSVAGTN
>CP032869.1|AYL94227.1|607763_607991_-|hypothetical-protein
MDILMAVGQFIVNLIDQQNFKVGYNHGGIRERRNYIQPIAETKIFGVTVLMKINDHLRQQAVLIFVTYFFISTFF
>CP032869.1|AYL94226.1|607120_607699_+|hypothetical-protein
MVWYSFGILKSNKGIKFKSMKHAFIFGTNIYISEKNTVSYGRNGDLREFLVIRSFFDPQQKDGIRELIVDADFSLTNNEPVKVVHNKIVTGINVNMVCEPDRVKIYHVGHEVPVLDIFQLDRHEFGSFGTIINSELMVQDPDIALTIKGNIKVGEGYISIDNEHLYVDEETFAGAVNNAHHGVIITADQKIA
>CP032869.1|AYL94234.1|616996_617428_-|hypothetical-protein
MFPYLKHQTELFVFENHLVYNYKSDDNATNFLMWKFDFKKHNDTITFAILGIYEIFTQDTDGKKIETLYVINAGRVFEIEFHNPDEPTSFKLFEDCLNLVYNDLKRCSKEALTDSHLNRFNFPGVDIEAFRGNLHLYLSQLDL
>CP032869.1|AYL94235.1|617780_619127_+|DNA/RNA-non-specific-endonuclease
MKLNITLILFSLLSLSSFGQKVVHHAYITYYNPRIKEPDSVIWNLTPKMVACGKQTRVDLFGPDPKIEHCAVKSDYEVNAGKPQSLKIDLGHLFNFEEAQCDSTDRIECFYLSNMLPQFDSFNKGDWKSLEIEEQKWAKTSSLHIIAGGSGSLGKLPAGENIPKFIWKVIRKDGRWTAWIMPNSPTSKGHKYTYWQKPLDSLNKLTGLKLTNISLKTKLMLATAPTIAPATGTDAWQAIVTILFALSLISERISNVFKLWWTKAEMSVGTLKQRKTHENNVLWIAILGGMITSFVAGADLFHMINYHNQLLFFSGLFIASTGESITQHVCGAILTAFFISLGSKFWHDMLDIVLQFSNLKKSQSDQAMQSVQQQASDTQASTVAKLDAMSAWLRTLPGFSGYRIDPSGGTVSIFFDKDTPITDADKATLSATLGMGTFNILSSNIRLA
>CP032869.1|AYL94236.1|619128_619803_+|hypothetical-protein
MDIKPGMPIFNSADPPKKDGEIALGSIGGFFTGKDNVQYLLTCYHCVYQATEGHDEFKPGVTKDRVSTFDPEGHPVEFGTIIYGQINHEVDAALVEVDSNFNIIPEIPVFQRKPGNIRLENTYGSLLPVQKYGLTTEYRKGTFQTISTTQGCPYPPNLLIHHFDKLLVIDGDGGLFADGGDSGSLILDMGGSVLGMVVLIDDDLITYGIPVSQLKKNLTQISWI
>CP032869.1|AYL94237.1|619829_621560_+|hypothetical-protein
MTICLASKAQNSVIVDVAAENLQNQSAKLDPTKPFKISLINAGTEKNVRLSFDFNNVYNQPQKTFTVIDGITLTPGSGFVLVAANTGFTMSFTLLRTGKHFKVIIGTDGGMTYQNDTPIVSANAIDNNALFSNTPHDQTDIINKKYKNLVIFDPCNKTYTIYRNGIKKNTLWFHGAPYAGLQGVVFLIDNFNTVKYDVTVTSSFIDNTYAIPDVFSSVGTLMTVGAPASTLGGFKMAELAKLNASLKTLLNHDCGNFYDAKNKVNTYLTANFGGDLQQSYNTAMTTFLTTINPATTKPYTNKEANTVLKEDYRLTVTPDSLVKETLKLISALQLSPFSYEYDVPQLQNADQLQFNLTVAPTANAFSGVKTGGLNINGPITLPILGGWKFDFSAGFFYTSKKNQTYTLRKNQAGSGDTTKSSIIMEDNYNGGTIGVNGLMHAYYRFADGFTPALSFGVGKSLDLNYTVLGGISALFNVSGQNKIGLTYGVNYTSIKAPSMAFRNNDGTFVQQPASVTAVTYANKFVWGKFFSLTYTFGLTKATQPASTAAAASASTSAATSTTGAATSAAGGKKSKS
>CP032869.1|AYL94238.1|622054_622639_+|hypothetical-protein
MAKFLKTKEKEIESVKNIFETIALFIAAVWAILTFYIKDAPELKGTASTNSEMTIEAVDAKKVHINYFVTIKNKGKSEFEVDGPTMVRLWLIPIDSVIHEKHIEWEKYLKMPSIDTISSQALTSTYDPDGEINEGFDFFTNDDPNVAVLAAIDVNFKQKSHWYQFWKWFGKEESRPDYSFSTKMRCIPDKKDQK
>CP032869.1|AYL94239.1|622849_623770_+|hypothetical-protein
MKRITVFIIVLLMPSGVWAWDGSGHMTAGAIAYYYLKVHNPAVLSKVLATLRLHPWYNQQHWKDTLALLKPDEQDAGLFMLASTYPDDAKKIPHFIDGDRTHKLWHYIDYPFVAPGSSAIPQQPKSPNAQEKLNELVRDLPAAGNSSAKAVNLAWLFHLIEDIHQPLHTAQLFDADNPGGDSGGLKTFIRIDTGSPRELHGVWDELVKGKVKTYPANASRLLAMDKYKESNLPELSANPKIADWILKESFLAAKQFAYLDGTVAGTQSHPTTVHVQYLKDASPLGEKRVVLSGIRLAKLLVTIYHG
>CP032869.1|AYL94240.1|623839_624103_+|hypothetical-protein
MKDTDDLKMQFTNIICNGGLTGLYLYRKRIFKLERVCSDPYKNSERYLQQVKVQPDLPGPGFLRFHHVLIFLFLFLEQGLRLTVYEE
>CP032869.1|AYL94241.1|624092_624794_+|hypothetical-protein
MRNKGDVNLIRDGIIKEWISTQTYQLPIVGIKVMASDIQVFGPLILMVASTWLYYEVRREHFTVGRLLGDVYYTQKNLGETTDPKIIIFCQEVYHNLIGYTVFNVVPYDTQISHLGNPLVSMQGINSLTWAHRTRRMVIKVLVMTPLISLGFILLTRILTFTIIESTVTGKVHQISTISGMRLFLLVLSSVLMLISLYVCFINVQKIYKLDNATRKLLDDFQLWAFQGINPAD
>CP032869.1|AYL94242.1|625342_626335_-|hypothetical-protein
MYKLFIAILLTLIGSTTGSPVRFSKAEGKLTITHFNITFAPDLSNRVNPKLYKRPLNDLELLQIISGKLHPDILNYRRSQNQHDRLLVDFINKGLISQYGVHTDKLLIDLGDPGKFPNQLARINYIMMDKPPKRTLAQDIAGMNREFDRVYNKAIKDNVGADIWTYLDQGIDDKNVFADEKPVQDADNDIVYVNHFRNVLILPTDGYIEAGIFGKGFDLGQQTINRFRNAFLASGGTDLQKFFRKNPSYHIKPVHNERLKHLEILILEMYDRSLTAAGSATVHPTDVEIMKLFWSDWLQQSGVKHFELHPCANSKDEAQKTVINFLGVNK
>CP032869.1|AYL94243.1|626327_628304_-|hypothetical-protein
MEVIDQQVINDNKEIYAKIQTELLSAEFEILIATAWFTDEELFNILLRKLGEGVRIEVIIADNQENEKLDFALLSSKGANVQKIKNSGYGIMNQKFCVIDRRLALHGSYNWTVNAKKNNQESIISTNHQETIDSLIENFGAIKTRILGDPIPLKTEKPKGIPVEIPVKVGTDFEKVLDTMIAAEIGSFDRQLLREQGFERCKANKGDHQVLYKAFDTVYSVFINDIDVIEDKKKRLVARIEEHRVRTIDLLNSNSQQHLDHLEREHELNKTKLLTRRTNLAAEIDIVYKNVSDIRSEKVPAAVKNKVLVEEQIKAAEREFITPRVKWFELIPTSVFCLALLIYLFVFYSSAAYILLFSVADAKAAQMAGSMTGASVQVFNPAALGKALHKGGTASLFIFLFVFIPLAFAVIEAFVREVWKQVACFILGIIVLDGAVAFKVTEAVHEVNYLSGNTTEKWHPGLAFTDTNFYLVFVFGAFGLFLFKIVFKKLMQGFEDRNPDILMQRNQVLIKQLREETGRYELDISQLKQEASDLEKQAIQLKADDTHAENELTDLPIALNREVKRNKDHLSTDINTIEKTAAIYTVHVQSDNLPISVDALKDRINVFLEGWNDYLFAEFAVARATLKTTEAYDTAMAWQNEKLQTNKIDKRVKFNTGV

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Crispr_ID: CP032869_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032869_3

1081513-1081602

Orphan

Consensus_repeat	Method
AACCGGAATTTGGGGGAATTAAATGAAT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of CP032869_3

>merge|CP032869|3|1081513-1081602|CRISPRCasFinder
AACCGGAATTTGGGGGAATTAAATGAATGGGCAGAATGCCAGGCAAATCCAATAAATTGTCTGAACCGGAATTTGGGGGAATTAATGAAT

>CP032869|3|3|1081513-1081602|CRISPRCasFinder
AACCGGAATTTGGGGGAATTAAATGAAT	GGGCAGAATGCCAGGCAAATCCAATAAATTGTCT
GAACCGGAATTTGGGGGAATTAATGAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP032869.1\|AYL99310.1\|1085670_1086639_+\|NmrA/HSCARG-family-protein	unknown	unknown	gnl\|CDD\|187561
CP032869.1\|AYL94568.1\|1075596_1076064_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94570.1\|1077365_1078493_+\|alpha-1,6-mannanase	unknown	unknown	gnl\|CDD\|367601
CP032869.1\|AYL94579.1\|1085188_1085566_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP032869.1\|AYL94569.1\|1076526_1077132_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240033
CP032869.1\|AYL94578.1\|1084257_1084866_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94576.1\|1082187_1082940_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|376655
CP032869.1\|AYL94571.1\|1078562_1079273_-\|DUF4844-domain-containing-protein	unknown	unknown	gnl\|CDD\|374384
CP032869.1\|AYL94577.1\|1082969_1084199_+\|DUF255-domain-containing-protein	unknown	unknown	gnl\|CDD\|239251
CP032869.1\|AYL94567.1\|1073310_1075482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380473
CP032869.1\|AYL94566.1\|1071773_1072835_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
CP032869.1\|AYL99311.1\|1089003_1089510_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377443
CP032869.1\|AYL94575.1\|1081139_1081472_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94581.1\|1087498_1087984_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94582.1\|1088188_1088869_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94574.1\|1080234_1081143_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
CP032869.1\|AYL94580.1\|1086936_1087347_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL99309.1\|1081840_1082182_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL94573.1\|1079790_1079946_+\|lmo0937-family-membrane-protein	unknown	unknown	unknown
CP032869.1\|AYL94572.1\|1079295_1079631_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP032869.1\|AYL94571.1\|1078562_1079273_-\|DUF4844-domain-containing-protein	gnl\|CDD\|374384	pfam16133, DUF4844, Domain of unknown function (DUF4844). this family consists of short uncharacterized proteins found mostly in different strains of Acinetobacter bumanii, but also in several Shewanella species and in some bacteria from the CFB group. Solved structure of ABAYE3784 protein from Acinetobacter baumannii AYE shows a five helical bundle with a very strong structural similarity to a bromodomain domain. However, the specific function of proteins from the DUF4844 family is unknown.	5.01681e-17
CP032869.1\|AYL94570.1\|1077365_1078493_+\|alpha-1,6-mannanase	gnl\|CDD\|367601	pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76. Family of alpha-1,6-mannanases.	6.65734e-33
CP032869.1\|AYL94567.1\|1073310_1075482_+\|hypothetical-protein	gnl\|CDD\|380473	cd20481, phage_tailspike_middle, N-terminal and middle domains of tailspike protein in Acinetobacter bacteriophages. This model describes the middle beta-helical domain of Acinetobacter bacteriophage tailspike proteins, as well as a separate N-terminal domain that does not appear to be part of the beta-helical substructure. The N-terminal domain may be involved in virion binding, and the molecules form a homo-trimeric arrangement. A C-terminal domain that may be involved in receptor binding is omitted from the model.	6.43157e-06
CP032869.1\|AYL94566.1\|1071773_1072835_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.91889e-28
CP032869.1\|AYL94579.1\|1085188_1085566_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	8.56974e-34
CP032869.1\|AYL94569.1\|1076526_1077132_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240033	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.61364e-24
CP032869.1\|AYL99311.1\|1089003_1089510_-\|hypothetical-protein	gnl\|CDD\|377443	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.	0.00268361
CP032869.1\|AYL94576.1\|1082187_1082940_+\|DUF72-domain-containing-protein	gnl\|CDD\|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	5.65425e-71
CP032869.1\|AYL94577.1\|1082969_1084199_+\|DUF255-domain-containing-protein	gnl\|CDD\|239251	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.	4.18124e-12
CP032869.1\|AYL99310.1\|1085670_1086639_+\|NmrA/HSCARG-family-protein	gnl\|CDD\|187561	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs. NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.62792e-62
CP032869.1\|AYL94574.1\|1080234_1081143_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.55626e-38

>CP032869.1|AYL94575.1|1081139_1081472_-|hypothetical-protein
MDYTLRKALAIEEYLAGGTTSAKLGQKYGFGNASVSRWVVEEKKKNNKIAQRAASLQVAKEREGMPEDIKALQEELRKAQLKIHLLEAMIDISDEQYGTDIRKKAGPRQS
>CP032869.1|AYL94574.1|1080234_1081143_-|IS3-family-transposase
MKVEQSQGCSLSLLCSLSGYSRQAYYKRRLLEEEEPIKEELLVQQVIGYRDLQPRIGGRKLFFLMTPFIKAHKLKMGRDHFFRMLGKYGLLNKKRRGKPQTTDSNHWMKKYPDLIKNMVPTRSEQLWVSDITYLELSSEFAYLSLVTDAYSRKIVGFHVSGNLTAEGSILALKMAIEGRQNKEELIHHSDRGTQYCCHDYIKTLQENNIDISMTQSGDPRDNAIAERVNGILKMELLKPSFIDIEDARTAVTQAVNIYNYLRPHSSISMLTPALVHTRKFKLKRLWRNNYKSKPAKREETAG
>CP032869.1|AYL94573.1|1079790_1079946_+|lmo0937-family-membrane-protein
MRSLLYIIAVILIIGWAISVFAYSATGLIHTLLVIAVISFLLGIIRSPSTV
>CP032869.1|AYL94572.1|1079295_1079631_-|hypothetical-protein
MKPFFITIAYNLHLIVLPESEAHIDGHPVLTYSYSIFRREPSVLNISENYDALLQTTKKNNPNYLGHINFEQPGKVFNYIADGHEALSRAEVEDVIEEINRYRDTPQLWSI
>CP032869.1|AYL94571.1|1078562_1079273_-|DUF4844-domain-containing-protein
MNAFDYVGLQSLKHKHMPDNQSTITKLIAFKERDKFSSSAWEERGLNPSPDDEMSHYLQQFFNDCAAGLADAVENEASPAKLKSLLKRYLGKIKYRDYDTEEGEFICDLFEEMAHIIGVNINDDLNNWLHGRTLNVLWKLKSIFNKTKPAEIQFTSCTGCEVELETHIISKQEGIPDQGWMIVRCNNCNEFNLLSFGKGIRQIQFINYGWIETLPPDKFNHTQALTRLQQVRTYRR
>CP032869.1|AYL94570.1|1077365_1078493_+|alpha-1,6-mannanase
MKKTCCILALSLLITIASCSKSKSLNPVNAPKTDTGKTNSKPGFTSADADLAYTAFNNAFYDTNNKLYFSTTKKGGVAAIWTQAIYWDMAMNVYERTKAPAQLTKISDIYQGNYNHYDGYNWNNTTVWFIYDDMMWWVIALARANQLTGNATYLEKAKSGFERVWNGSYDAAGGGMFWDFQHSGKNSCINFPTVIAAMKLYSITKDAAYLDKAKMIYTWSKTNLVDASGKVNDNKIGNNPPGGQDYTYNSGTAIGAAMALYKQSNDAAYLNDAKLYADYVKNNMCTNGILPAEGDFNEQGVLKAIFAQYIMQLINDGGQNQYLSWIQTNVNTGWGNRDGRNLTYRNYAVGTPTGDIQSYEASSIVTFMQLVLPTK
>CP032869.1|AYL94569.1|1076526_1077132_+|NUDIX-domain-containing-protein
MKNQLDLLEKIYALAQTGIKYTRNPFDLDRYQTLLAIATDEYSQLTGLDTEILRERFNNDLGYATPKFGVNGALFNAEGKILLEHRTDDNLWGLPGGWVDVGEDPVSALKREFVEEASLVVEPVELINFYTRLPGPFAQPHTSVHALYFCRYISGNITKSIESFDIDYFDPATITAWHKDHGELARQAVGYFKKPPLNLPR
>CP032869.1|AYL94568.1|1075596_1076064_+|hypothetical-protein
MKSIVKRNQNLLPILILSLILQLLSSNSSEASTTKRFPTDSIAHSSKTREVLLSQQLFVVKLSKPKAKNARPGKVDLKAELRDAFMIVCYDKNKTYNELNWTMCPDGHCPVAGEYQFGSVKYRQLDTLIAKTKLAEAEAAKKTAALIKSVQNKTH
>CP032869.1|AYL94567.1|1073310_1075482_+|hypothetical-protein
MIQTTIQGIRDFTGTITDPIFYTTDINQEGNWRYDPNDTTSADDTGSILVTADGKRVKRIYEGVFDVKWFGAKANFASASSQFVLASATAGSLIANGSNSFTISTGQFSSSDVGKIINIRYSNDANTNFITSTITAVASATQITLNNNSTFDLPSAAQIAGAQPDEKLTVTVLYGNDDTAAIQKAIDASFALKVYKQPQVYLSAGSYFVTQLVMKTGTQFYGDGATQQNIRAQSKLYQIPGSNADVIRVESGANTTGALFWSGFLHDFSIMGNPSNTGGWGISIRNTDGSRVSPADITMIQRLTVRYMPSGGIEFPLAGIPLFVTDIKLYCNGGPGIGLGSKEGSEGKKHAQSVNLTNISADSNVGAAIKINNLDMNSNVVIVNLKCEDFAINPYDTSVPKVTVQPYPVLIDNCQGTGITLLGANNQGPTTSGSLKVKSTIKSTNSSPNILWNNCYSRITSANDVPLDPDPEIVEGSGIPYTTFFGTYPNFNLATTFTQSHRTPLIRLIKTDNIDDEKVWDYRLSSTRLELGINNDALNQFKPVIQFQRTGNNVKGVYYPNKIIRIPIAGSIPTLSGNPVTAADSSLYELINTSALNMPTISGSLIGQELELIFDGFTTIVHGTGNITLASGANFKPAAGQIVRFIKGNTTWLEVGGASCTPTALAITNTTTSALSKSSLNSSYPAAIVGTKVVCASITGGGIVYEKVDNSSTGNWISSAMIS
>CP032869.1|AYL94566.1|1071773_1072835_-|WYL-domain-containing-protein
MPVNRNALIRYRTIDSCLQNRRKQWTLDDLIEACSEALYEYQGIDSGVSRRTVQADIEMMRSNKLGYEAPIVVVDKKYYTYADKGYSITNIPINNQDIQVLGEVAGLLQQFKGFSHFTDISEMVTRLEDKIYSQKTHSVPVVDFEKNDNLKGLEWIEVIRKAIVAKRTMCVTYQSFKARDASTFCFSGYLLKEYRNRWFVLGLSHQRNKPLLTLALDRIQTIELHDEDYIENKTINLATYYDDALGVTKSPGQRDTTIIFWIDKANAPYVITKPLHHTQKLLREEADGKLFSIKVIMNFELERELLGFGAKLKVISPRILVKQIKQQLQKALGHYAADSPIPQGKNLSSLLDE
>CP032869.1|AYL99309.1|1081840_1082182_+|hypothetical-protein
MALSDEEFREEYKPLYIPAHFEIQDTQQNKIIFALAQIGEGSAADVINELETLQPGITDEQLTAITKTVLADLHNKGLLKGEEHNGRMQYNLSKITEANDGPADQDVPVTGLS
>CP032869.1|AYL94576.1|1082187_1082940_+|DUF72-domain-containing-protein
MRGDFYLGTSNIVLPVPNKLAFPEAWRDKSRLSFYASLFNSLEVNSTFYKVPLGKTVARWSAEVPAGFRFTFKFWKEITHNKNLAFKPADVERFFEVINRCDKKGCLLIQLPPGTRFESFGQLAALLAIIQQYNRESPWRIVVEFRHSSWYNQQTYQLLQNNDVAIVMHDMKASAPPFIESTADFVYLRFHGPEAGYRGNYADDVIAEYAAYINEWRGEGKTVYAYFNNTLGSALGNLVGLNSVVVKDDQ
>CP032869.1|AYL94577.1|1082969_1084199_+|DUF255-domain-containing-protein
MKPQILCFCLLLSLLRPAHAQQQRGGIRFLGGSWKQLLATAQAKQLPIFVDVYTDWCGPCKRMEKEIFPLPEVGKFYNNNFICYRLNAEKGEGPAIAKAFGISAYPTWLYLDPKGVLRSKRTDYMPVDEFIAAAKLALGSDSTSLRLSALDARFAGGERSKSFFHTYLEARTAVQLDNARILNAYVATLKKQDMNAAELRFLLKNCGRTWSAAVPLIAENLNVFDHDEQKQVANNLFDNTLYFAWGDAAKAGDRQTALQALAIEEKLYPLLTEAAQLTADHAALYHCRKLQLTDGLKKAGNRLAVKQMAVDTLLAREKDKELFDKVMAPFLSGQQDSTKIPGFAEEKLLAARQYSGNVATLLFEVADAFRELLPGDDAAQKDAAKWAERAYLLVPNEHTRALVAKFKAK
>CP032869.1|AYL94578.1|1084257_1084866_-|hypothetical-protein
MNTDKAHHLRPFWPEKEADANARKSVKNRIEALDDKLQRMLLWSNILTLCACIQVIFTISRLYGSLTGGHPVLLAATLILIMIMLALYLFFVWRGIVYRDTGSTDIRISYLQYRIQKITGQVKLMAGYLSVYSVVIVISGIFFYVDINNGLTILFKTTAPVTMLMYLLGFYFITGFVKQKRKLSAIKKQLDHTEPQTDLNSL
>CP032869.1|AYL94579.1|1085188_1085566_-|transcriptional-regulator
MKIECIGEGVKLNDKVYPCTVSLAMDLVGGKWKTVILYHLKSEPKRYSELLKEMQAVTEMTLSLQLKQLEKDGLITRKVYGNKPPVKVVYSLTDFGKTFIPVLEAITAWGNQVTEQKGTFVRNSL
>CP032869.1|AYL99310.1|1085670_1086639_+|NmrA/HSCARG-family-protein
MANISKDSTLQNKPLITITGVLGKQGYSAAHTLLQSGLYRVRGITRRIDSPQARALIEMGAELINLPLDAGYQHEYARAFFGSDAVFMMTPGIAPPQTHEFELGKQLADAALKAGVKHLIFSSLENVDKITGGKKFAPHFTDKARVEEYIRTLPIKSTFIYMAFFYTNLIEFYTPYQHGDTLVFPIYLPEDFRAPFADPLTATGPAVLEILSDPDRYSGKSLPVIGDVISPREMVDTFMRVTGKKAVYSSAFSREDFLRHFPEFGANELLLQETLGMVEYAVEYGYFSKDRDWLWSRRVNPNSLTWEQFLRSTGWQGEKRSY
>CP032869.1|AYL94580.1|1086936_1087347_-|hypothetical-protein
MYILYPEVAGQLGTKTTLDRNVHPPIVSKLHYQFDGWLGDYLLECFPCFICTEKLMEYLKSSDLTGFADCEISKSEQFTDLYPDRILPVFYWLVVNGDANNDFSLSPNASLLVSENALNSLKKFQTTNCEIENYFN
>CP032869.1|AYL94581.1|1087498_1087984_-|hypothetical-protein
MPTPDLTNIETLLKEEYFHLQNTIESFDSKSITIKAWSISGSLVVMGAGFTDKGSNELFLVASFASLLFWYIEGIWKAFQQSFYDRVYTIEDHFNAEIKKPIQPLQLSHFWSKRWHGKYKKGTFKVLFWPHVMLPHVFVFLGGIAIYLLATYHIINLRANI
>CP032869.1|AYL94582.1|1088188_1088869_-|hypothetical-protein
MINKVPVKKLIEFGRFSERRQTTFANKLKVPKKIDLDENSNGGDYWIRSTSGLARAFKENSPSVIKEKIEDLSTDFESTEFNNTKIMFKRNLEILHNYEDFDFSIWRPSNDLKFLSKSNSPLLIKDVPIQILPHHIFSFKNKGELSVGGIWFVVWLEGFKPSDLGTFSDALFRYISHLYSREHKVNPTYCIIVDALSKETVNYQQVLEGKIPSSLNTTIDRLKKYL
>CP032869.1|AYL99311.1|1089003_1089510_-|hypothetical-protein
MSHTHLSSTGKKGSKRIFVAIPFSEKNPERPLGFFKEVLQSLITPAVEKAGFEAYTANIKGSDIIHSTIINELLDADLVVADLTDHNPNVLFELGMRMALDKPVVIIKAKGTGNIFDVDNMMRYFEYNPVLWKSSIEADIPELSDHIKAAWENKGSTQTYMKLLRQRQ

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Crispr_ID: CP032869_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032869_6

2701350-2701436

Orphan

Consensus_repeat	Method
GGAAATTCTGATTCAGACAATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032869_6

>merge|CP032869|6|2701350-2701436|CRISPRCasFinder
GGAAATTCTGATTCAGACAATCTTAATTTTGCGATTGATTAGATTCTGTTAATTCCCAAATTCTGTAAATTCTGATTCAGACAATCT

>CP032869|6|5|2701350-2701436|CRISPRCasFinder
GGAAATTCTGATTCAGACAATCT	TAATTTTGCGATTGATTAGATTCTGTTAATTCCCAAATTCT
GTAAATTCTGATTCAGACAATCT

Protein	Signature genes	Signature genes Name	Protein_function
CP032869.1\|AYL95716.1\|2697833_2698412_-\|RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|274376
CP032869.1\|AYL95724.1\|2709334_2709553_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL95720.1\|2704835_2705729_-\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|225921
CP032869.1\|AYL95709.1\|2690463_2692080_+\|carboxylesterase/lipase-family-protein	unknown	unknown	gnl\|CDD\|225181
CP032869.1\|AYL95708.1\|2689472_2690237_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL95727.1\|2711087_2711558_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP032869.1\|AYL95712.1\|2693350_2694331_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
CP032869.1\|AYL95722.1\|2707770_2708703_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL95714.1\|2695137_2696874_-\|carboxypeptidase-like-regulatory-domain-containing-protein	unknown	unknown	gnl\|CDD\|372685
CP032869.1\|AYL95713.1\|2694621_2695092_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004
CP032869.1\|AYL95726.1\|2710235_2710913_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
CP032869.1\|AYL95723.1\|2708705_2709236_+\|DUF3267-domain-containing-protein	unknown	unknown	unknown
CP032869.1\|AYL95717.1\|2698454_2700836_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|372685
CP032869.1\|AYL95710.1\|2692128_2692701_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
CP032869.1\|AYL95719.1\|2703994_2704498_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL95715.1\|2696878_2697829_-\|DUF4974-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
CP032869.1\|AYL95728.1\|2711687_2712350_+\|metal-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224240
CP032869.1\|AYL95725.1\|2709611_2710163_-\|DUF2892-domain-containing-protein	unknown	unknown	unknown
CP032869.1\|AYL95711.1\|2692770_2693190_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|379266
CP032869.1\|AYL95721.1\|2705931_2707653_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778

Protein	Function_ID	Function_description	E-value
CP032869.1\|AYL95716.1\|2697833_2698412_-\|RNA-polymerase-sigma-70-factor	gnl\|CDD\|274376	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.	1.03121e-55
CP032869.1\|AYL95720.1\|2704835_2705729_-\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|225921	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism].	1.95981e-56
CP032869.1\|AYL95709.1\|2690463_2692080_+\|carboxylesterase/lipase-family-protein	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	7.53161e-122
CP032869.1\|AYL95726.1\|2710235_2710913_+\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	3.91455e-145
CP032869.1\|AYL95712.1\|2693350_2694331_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.47738e-64
CP032869.1\|AYL95714.1\|2695137_2696874_-\|carboxypeptidase-like-regulatory-domain-containing-protein	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	6.86997e-12
CP032869.1\|AYL95713.1\|2694621_2695092_-\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	8.41891e-31
CP032869.1\|AYL95717.1\|2698454_2700836_-\|TonB-dependent-receptor	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	1.50945e-15
CP032869.1\|AYL95710.1\|2692128_2692701_-\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	4.3299e-24
CP032869.1\|AYL95715.1\|2696878_2697829_-\|DUF4974-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	7.83052e-30
CP032869.1\|AYL95728.1\|2711687_2712350_+\|metal-dependent-transcriptional-regulator	gnl\|CDD\|224240	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription].	6.90064e-49
CP032869.1\|AYL95727.1\|2711087_2711558_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.64149e-44
CP032869.1\|AYL95711.1\|2692770_2693190_-\|DoxX-family-protein	gnl\|CDD\|379266	pfam13564, DoxX_2, DoxX-like family. This family of uncharacterized proteins are related to DoxX pfam07681.	1.19415e-09
CP032869.1\|AYL95721.1\|2705931_2707653_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0

>CP032869.1|AYL95717.1|2698454_2700836_-|TonB-dependent-receptor
MNKLSSLLLLFTFLISASLGIAQVKNKPASFTQTIRGIIVDKGAKQTLPGVMVKVTSIEPGRAAATDANGIFHITQVPVGRQVVEATYAGYNKVVLTDILVITGKETELNIELEPANTQLNEVVVSATSNKRPINSMAMASGRSFSPEETNRYAGALFDPARMAQGFAGVVAGGDNNEIIVRGNSPKSLQWRLEGIEIVSPNHFNNEGSAGGGVSMLNSTVIGTSDFYTGALAAEYNNATAGVFDLRFRKGNTDKREYAFTAGVLGFGATMEGPFKKGGNASYLLSYRYSTLGLLNAVGVKVSDSGVPQYQDLSFNIVLPTKSAGTFSLFGVGGAGSDNKNADRDTAKWDERIDAWDLKYSYHSGSAGLKHIYIANNRLNFSNIISVSQSRLSTKVDTLTSKFEPSLFQNNHYDNGAVRYAGIVNYRTGNNNNIRAGLNAGFLTYNLYDLEYQRDDKTLKELLNQKGNASTFDGFIQNKHEFGETLSLNTGVHVNYFNLSKTWSYEPRAGINWRVTPDQELSLAGGIYSRLEPLSFYFAKSATSNAAVSSKLSPTKSAQLVAGYEKLFSNHLKFKTEAYYQHLYDVPVSSDLTDNFSVLNVSDNTAISGDDYRSLVNKGTGKNYGVEVSVERSLNKGYYFMITSSVFNSKYKALSGQEFNTTFNTQYVTNLVAGKEWATGDNHKNLFGLNGKIIYAGGRKYTPILVDETFKRDEQIIDQSKTNTLTADPYIRVDFSASYRINSKKVSHFLLLDIQNLLNRRNNTGLFYNTSKRIIEKNKWIGIFPTINYRIEI
>CP032869.1|AYL95716.1|2697833_2698412_-|RNA-polymerase-sigma-70-factor
MDLNNEQLIPLLLSGDEATFEGVYKHFIRPLHVYAISILRDEDTAKGMVQNVFLKLWERRERLQFSGSIKAYLYGAVYNECLNNLRHQKVKVDHQQHVWYMTKDNADESTGMELLDLKEKLQQAMNELPEKCRTVFQLSRFEDLKYQEIADELGISIKTVENQMGKALKTLRLKLVDYLPLLIWFISRALNI
>CP032869.1|AYL95715.1|2696878_2697829_-|DUF4974-domain-containing-protein
MDELLTKYMLNETTPVENETISRWLEQSEDNRRYFNHFKLIWDTARNLKTESKLDPETSWAEFKQLAANVKPGATVRSISQPKRWLRVAAVWLAIFGCAALIYTLNKPGKPNILTLQSNNAVKKITLPDSSVVTLNKTSQLVYPDRFAGNTREINLKGEAFFDVAHDKSKPFMIHVNSVTVRVVGTSFNIKSAGDSTEVIVETGIVQVIQQEVEVRLKPREKVMVKSGRFKKGSTQDDLYSYYRTQKFVANNTPLWRLVEVLNEVYHANIVIDNKKLGNRVITTTFKADSLDNILKVIKDTFGVEIIRKPHLIIIK
>CP032869.1|AYL95714.1|2695137_2696874_-|carboxypeptidase-like-regulatory-domain-containing-protein
MEKRLNILFYIFLVLAGCLLITDALAQDNLNRVVALNVKQKKIADVLTVIGEKGKFYFSYSNDVIKTDSVVSVTTSGQTIRNLLNEFFHGKVDYKEAQGYIILRPTPYRLSLVPDSAINPANVYYISGHVLDDNTGAPLENASVYDKGTLASTLTDAGGYFKLKVKADGVLTLTVSKEMYKDTSINFLSNVNVSIKPRNYYYSEGATSTKTERSWLGRMFVSSGQKIQNLNLGGFVSKVPVQTSFLPGLGSHGLMSGQVINNFSLNLLGGYNGGVDGVELGGLFNLNKQDVQYMQAAGLFNVVGGNSEGVQLAGINNNDLKSMKGLQAAGVFNMVKDTLTGVQIAGIFNHAGGYVNAFQAAGIYNYDKKDSKGFMIAGLANVTGGTSKGVQVAGIINKAHVIKGFSFAMVNVADTLDGYAIGLVNISKNGYAKILVYSDEITTANLAFKTGNAKLYSVISGGVNFTDQHTFYSYGFGVGHDFIFNDRYSLSAEGSTHILLAKGWKNQNQVNRLSALFNFKAGSKFGFFAGPSFNVYTNYSDHAGDSDIRQIIKNKPGLIDWGNRTKGWIGWTAGISLL
>CP032869.1|AYL95713.1|2694621_2695092_-|RidA-family-protein
MKKLLHLVLLMISSACFAQQGGKDLEFLNPPTVGKPFGYSHAVVVDLGKYKMVIMSGQVGLDQDGKLAGNGDLSSQTEQVFTNIKNIVEAAGGTMNDLVELNYYLMDASQVKLVRSIRDKFVNTKQPPASTLVQVSKLFRDDILIEIKAVAMIGKK
>CP032869.1|AYL95712.1|2693350_2694331_+|helix-turn-helix-domain-containing-protein
MKHVSILIPNEAVLASIVDARTIFTGANDFLQSMGREPVFEVQMIGLAWDTKVHNGMFSVHSDLLLSDLHRTDIIIIPAISGDLENAVKVNQEFVPWIINQYNNGAEVASLCIGSFILASTGLLNGRECSSHWITAEKFRAMFPEVTLVDGRIVTEQQGLYSSGGATSYWSLLLLLIEKYAGREIAIMAAKIYALEIDRKSQSPFAMFTGQKKHEDDPIKQAQEYIENNVTEKISVEDLSSRYAIGRRHFERRFKKATNNTPVEYIQRVKIEAAKKQLETSPKNINEVMWEVGYTDAKAFRTVFKKITGLSPIDYRNKYNKEAAVV
>CP032869.1|AYL95711.1|2692770_2693190_-|DoxX-family-protein
MKPKTTKILYWIFTILFALAMLGDAYGGITMQQAGKESLAKLGYPMYLLVIMGSAKVLGVIAILQTRYSTIKEWAYSGFTISFIGAFLSWTAVGTAETVNLIAPLVMLAVMFFTYYLWKKYEQVKDLSVTNTVLAGNAA
>CP032869.1|AYL95710.1|2692128_2692701_-|dihydrofolate-reductase
MRKLIVSVNITLDGFVADTGGGLDWHLQSWSNEQAYALAEILSRADTILLGRKTYQAMAAYWPWQAKNVNFPREDIAYAEMMNNHRKVVLSTTMQNASWHNSVLINSDVKRTLSNLKKQPGEDILTYGSISTVKKLAAFNLVDEYQLWVHPVSLGQGLPFFKTPKDDSGLKPVSSKIFESGVVLMVYRHI
>CP032869.1|AYL95709.1|2690463_2692080_+|carboxylesterase/lipase-family-protein
MKRNSTILLLLFACVLSSTALAQNAEPVVAGSDIAVTNTGSGKVKGYIHNGIFTFKGIPYAKADRFMAPEKPTPWTDVRSSKTYGPVCPTDPTLTVNDEFEFAFQHDLGYQNEHCQSLNVWTQKLNDGKKRPVMVWLHGGGFTAGSSIELPSYDGESLAKKGDVVLVSVNHRLNILGFLDLSAYGDKYKGSANAGLLDLKLALQWVHENIAQFGGDPDNVTIFGQSGGGGKVTSLMNAPSVKGLFKNAIVESGSYITNFNEKPVTQKVAAALLDELHLQPAQVDSLQKIPYDILNEAGKKAMRKVAADLRKEGKGINGWGPALDGDFLPYQPSDPMAKELSKNVPLLVGTTKNEFAAFMPANKNQTMDDLKASLQKRYGDKTDAFMAAVKTAYPTVSTPGGYTDIEFNFRTLAIKQANEKAVSGAAPVYMYLFTWQSPVNGGMYKAMHCMDIAFQFNNIARCQEMTGGGKEAYALADKISSAWINFARTGNPNTPSLPKWSAYTAENGATMILDNQCVLKNHPDDELLKIVASATPKP
>CP032869.1|AYL95708.1|2689472_2690237_-|hypothetical-protein
MCARLLYIIVAFFCICSCGGARHKGDKLKPNADAASEEKSVDTLAQKPQPAFGYRFVISGDFDGDGKQEKLVEHFCDSTGAKEVDKFFKGDYDDDVKMLHSRKCHSFLKCDNNLIDAPPIEPLPNFGLLFLKNEGDLNGDGNDEISFVTNKADWSNLNDYTIMTYKHGKWETLYWFPIWEWQLPDLPRKAYNLKLYGNQEDVIDTTDQRLLKELESFSGLVKKINNKKLQIIYRSRDISADTIIVSLKNHHPKL
>CP032869.1|AYL95719.1|2703994_2704498_-|hypothetical-protein
MNQFINFFWTILCFAGVVVYWVSAGLSPGFYIFIALSFIPALLPQKILGKLQLSNSTRLYQRLGVRFIRRFVQHGDIANRISRKNKPGYTAIPQKNNPAMYLKTIAMYERFHFMCLLFFLFSTVAALLDGRYIIAAVIMICNIIYNCCPILLQQFNRIRIRRLTETI
>CP032869.1|AYL95720.1|2704835_2705729_-|SMP-30/gluconolactonase/LRE-family-protein
MKKLSAIILVLSALTGKLSAQTETGLYDAGTKAQLVAKQFSFTEGPAVDKKGNVFFTDQPNNKIWKYDTEGKLSVFLDSAGRSNGMYFDKKGNLISCADADDQLWSISPKGKVTVLLKDYEGHKFNGPNDVWVRPDGGIYITDPYYQRDYWTRKQPELDGMKLYYLPKGKGPAVMVDDKFVKPNGIIGTPDGKNLYVADIGDNKTYRFDINKDGSLTNRILFIAMGCDGMTIDQQGNIYMCGKGVTIVNPKGEKIGHIDIDEPWTANICFGGKNMDTLFITASKAVYTFKMNVKGVN
>CP032869.1|AYL95721.1|2705931_2707653_+|lysine--tRNA-ligase
MSIALSEQEIFRRKSLQELRALGINPYPAEAFNVNAWAQDIADNFKDKPEAYQDVVIAGRIMTRRIMGNASFAEIQDSTGRVQIYLKRDEICPGEDKTLYNTVFRKLLDIGDYVGIKGYVFTTQTGEISVHVRELIVLSKSLKPLPVVKREDDGTIHDGFTDPELRYRQRYVDLTVNPAYKQIFVNRSKVISAMRNYFNAQGWMEVETPILQAVHGGAAARPFATHHNTLDMPLFLRIANELYLKRLIVAGFDGVYEFGKMFRNEGMDRTHNPEFTAMEIYVAYKDYIWMMAMVEECLETVARAVHGIPVVQVGNNEINFAGPYEKLSMYDSILKYTGIDVSAMDEAGLRNVCAELKIEVNPSMGKGKLIDEIFSAKVEHHLIQPTYITDYPIEMTPLAKKHRTKDGLVERFELFVNGKEIANAYSELNDPIDQRERLEEQLILAGRGDDEAMAMDDDFLRALEYGMPPTSGLGIGIDRLVMLMTNQSTIQEVLFFPQMRPEKKAKVASTDDFVNIGVPAEWVQVLNKMGFNTVEELKAANPNKVFNDLGGMRKKLKLDITMPTKDEVMAWFA
>CP032869.1|AYL95722.1|2707770_2708703_+|hypothetical-protein
MNLSPFAPSSKRDSILNPALIQGNPHLRISFSGDEETPATQEEPSANQQEQPAEAPPKDSVCALCKTDFGSPLKKLGVYPICTECNADLEKKIFPTWVKFFLGGLVALVVFSLFWNWRFFESFNSMNAANRQFAKADYSGAYVLMDKAAKKVPENRDIAEIAAYFHAIELLSKDKSEAALAELDKCADIDSAFHISTLKLTAQLGATFDKKDYAGFLKTSKIVLDQDSTSSQSWAGVASAYACLYAQNGQDSLKQLALQYLHKSHAIDDTSAAAKEYTGRILYRIDSKQIIDIDEYTKKFPKGYTSSTTK
>CP032869.1|AYL95723.1|2708705_2709236_+|DUF3267-domain-containing-protein
MFFIPGIVIAIATFPGVIVHEFAHLLFCRLRKVAVFEVCYFRFANPLGYVIHENTTNFYTTFLISMGPFFVNTLLCLLICIPAYMPISFFEVEHPLSYFLMWLGISIGMHAIPSNQDANNLYEQAKTEAKSGNVLAIISFPITGLIYLFNILRIVWADLFYGIAIGVGLPSLIFKS
>CP032869.1|AYL95724.1|2709334_2709553_+|hypothetical-protein
MTNSILEITENEYLIKLNRNNFNLSFIRSLLKLVEVANPSEGPEYSSYTDSYVQPYQNHSATPDYFSAIEEK
>CP032869.1|AYL95725.1|2709611_2710163_-|DUF2892-domain-containing-protein
MSNIVRLVIACVVMGAAIALCAFGFWGWGILVLFLGGIILLSFFFNENMIIAQYFLRKEDSAKAEEWLLKITDYEKQLYKSQHGYYNLLIGLIESRKAPLKAEKYYKKALSLGMKMSHNTALAKLSLAGIAMAKRDKREATRLLSEASKDDKNKLLTEQIKMMKGQMAQMDKQQVVRGGYRQF
>CP032869.1|AYL95726.1|2710235_2710913_+|uracil-DNA-glycosylase
MAIALPPSWLEVLEQEFDKPYMVKLRDFLKSERESGQVVYPKNADIFNAFNTTHFEDVKVVILGQDPYHGAHQAHGLSFSVQKGIAIPRSLMNIYKELQSDIPGFIPPSHGNLEEWAKQGVLLLNATLTVRASTPGSHQKRGWEEFTDHVIKTISDKKEAIVFILWGAFAQSKAVLIDEKKHFIIRSPHPSPFSADRGFFGSKPFSKTNEILKKEGKQPIDWQIH
>CP032869.1|AYL95727.1|2711087_2711558_-|winged-helix-turn-helix-transcriptional-regulator
MAAELDKIDLQILKILQENGRITNLQLSNEIGLSPAPTLERVRKLENAEYIKSYHALVDEEKLGLGIKTFIQISLDFHQKNTIQTFLDEIKTIKEVTECHHVTGQCDFLLKVYVRDIKSYEQLIMEKISRITVVKTFQTMMIMSTSKKEPIVPLEY
>CP032869.1|AYL95728.1|2711687_2712350_+|metal-dependent-transcriptional-regulator
MNTLAEENYLKAIYHLTVNDGNASTNSIASSLNTKASSVTDMFKKLAEKALINYIPYQGVSLTPSGEKIALGIIRKHRLWEYFLVEKLNFKWDEVHDLAEEMEHISSQELIDRLDRFMGYPKHDPHGDPIPDCNGNFSNDELKLVSAVTINQTGIISAVRDHSPSFLQYLDKQELTIGCRITVVDIIDYDHSITLQLNNKKIQISREVANNLLITNEQHS

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Crispr_ID: CP032869_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032869_8

3894496-3894613

Orphan

Consensus_repeat	Method
TGATTCCGCTGATTTTTATTTTTGGGGATTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032869_8

>merge|CP032869|8|3894496-3894613|CRISPRCasFinder
TGATTCCGCTGATTTTTATTTTTGGGGATTACAGCGATTGGAGGTTGATTACACCGATTTTGACCGCTGATTAGAATGATTACGCTGATTCCGCTGATTTTTATTTTTCGGGATTACA

>CP032869|8|7|3894496-3894613|CRISPRCasFinder
TGATTCCGCTGATTTTTATTTTTGGGGATTACA	GCGATTGGAGGTTGATTACACCGATTTTGACCGCTGATTAGAATGATTACGC
TGATTCCGCTGATTTTTATTTTTCGGGATTACA

Protein	Signature genes	Signature genes Name	Protein_function
CP032869.1\|AYL96632.1\|3886888_3887797_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197666
CP032869.1\|AYL96638.1\|3891426_3892269_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|367555
CP032869.1\|AYL96648.1\|3910199_3911039_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293839
CP032869.1\|AYL99462.1\|3903580_3904768_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|100032
CP032869.1\|AYL96636.1\|3890447_3890828_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL96637.1\|3890888_3891344_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP032869.1\|AYL96647.1\|3908677_3910069_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
CP032869.1\|AYL96644.1\|3898978_3901153_+\|glutamine-synthetase-type-III	unknown	unknown	gnl\|CDD\|226477
CP032869.1\|AYL96631.1\|3885573_3886716_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|367314
CP032869.1\|AYL96649.1\|3911271_3912132_+\|RNA-polymerase-sigma-factor-RpoD/SigA	unknown	unknown	gnl\|CDD\|223642
CP032869.1\|AYL96646.1\|3904927_3908281_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379297
CP032869.1\|AYL96645.1\|3901347_3903126_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|238233
CP032869.1\|AYL96642.1\|3895497_3896538_-\|porin	unknown	unknown	gnl\|CDD\|369446
CP032869.1\|AYL96641.1\|3894819_3895419_-\|DUF4468-domain-containing-protein	unknown	unknown	gnl\|CDD\|213397
CP032869.1\|AYL96633.1\|3888000_3888909_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
CP032869.1\|AYL96635.1\|3889410_3890226_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
CP032869.1\|AYL96643.1\|3896767_3898375_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
CP032869.1\|AYL96639.1\|3892567_3892924_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL96640.1\|3893072_3894383_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
CP032869.1\|AYL96634.1\|3888905_3889238_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP032869.1\|AYL96637.1\|3890888_3891344_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.32994e-16
CP032869.1\|AYL96638.1\|3891426_3892269_-\|TonB-family-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	8.79627e-18
CP032869.1\|AYL96648.1\|3910199_3911039_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293839	cd16281, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	7.1585e-154
CP032869.1\|AYL99462.1\|3903580_3904768_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|100032	cd02196, PurM, PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	7.57832e-69
CP032869.1\|AYL96632.1\|3886888_3887797_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	3.74049e-20
CP032869.1\|AYL96644.1\|3898978_3901153_+\|glutamine-synthetase-type-III	gnl\|CDD\|226477	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only].	0
CP032869.1\|AYL96631.1\|3885573_3886716_-\|aminopeptidase	gnl\|CDD\|367314	pfam03051, Peptidase_C1_2, Peptidase C1-like family. This family is closely related to the Peptidase_C1 family pfam00112, containing several prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.	2.26081e-13
CP032869.1\|AYL96649.1\|3911271_3912132_+\|RNA-polymerase-sigma-factor-RpoD/SigA	gnl\|CDD\|223642	COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription].	3.11311e-86
CP032869.1\|AYL96646.1\|3904927_3908281_-\|TonB-dependent-receptor	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	7.54433e-18
CP032869.1\|AYL96645.1\|3901347_3903126_-\|CBS-domain-containing-protein	gnl\|CDD\|238233	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore homodimers with one pore per subunit without axial symmetry. Although lacking the typical voltage-sensor found in cation channels, all studied ClC channels are gated (opened and closed) by transmembrane voltage. The gating is conferred by the permeating ion itself, acting as the gating charge. In addition, eukaryotic and some prokaryotic ClC channels have two additional C-terminal CBS (cystathionine beta synthase) domains of putative regulatory function.	5.38027e-87
CP032869.1\|AYL96642.1\|3895497_3896538_-\|porin	gnl\|CDD\|369446	pfam07642, BBP2, Putative beta-barrel porin-2, OmpL-like. bbp2. BBP2 is a family of putative porin proteins that are likely to be outer membrane beta barrel proteins porins.	9.17871e-66
CP032869.1\|AYL96641.1\|3894819_3895419_-\|DUF4468-domain-containing-protein	gnl\|CDD\|213397	cd12190, Bacova_04320_like, Uncharacterized proteins similar to Bacteroides ovatus 4320. This model characterized a family of proteins conserved in Bacteroidetes, similar to B. ovatus ATCC 8483 reading frame 04320. Structurally, the protein resembles members of the SRPBCC domain superfamily (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC).	5.45972e-08
CP032869.1\|AYL96633.1\|3888000_3888909_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.1193e-39
CP032869.1\|AYL96635.1\|3889410_3890226_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.51896e-83
CP032869.1\|AYL96643.1\|3896767_3898375_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.77533e-108
CP032869.1\|AYL96647.1\|3908677_3910069_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
CP032869.1\|AYL96640.1\|3893072_3894383_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.19133e-145

>CP032869.1|AYL96640.1|3893072_3894383_+|ammonium-transporter
MKRFIPFGILLIVIVLALIDPSVTLTNVKDSKIDSGDTAWLLVSTALVLIMTPGLAFFYGGMVSKKNVLSTMLQSFVCMGVITVLWVIFGFSLAFGDDRLGGFIGDPSTFFMMKGTLGTAVWPAAQTIPLVLFAMFQLKFAVITPALITGAFAERIRFNSYVIFLCLFMVFIYAPLAHATWHPNGFLFGKGVLDFAGGTVVHMSAGWAALASAIYLKGRNETAHAPARISYVLLGTGLLWFGWFGFNAGSALGSGTLAATALATTTTASAAAAMAWMFFDILRGKKPGVLGACIGAVVGLVAITPAAGFVTIPHSLIIGIVAAVVSNLVVIWRTKTSIDDTLDVFPCHGVGGMVGMLLTGVFAHQNVNGGNTTGNGLFYGETHLFIVHLITLIGVSAFAFFGSFILLKVTDMISKLRVTPEEELAGLDISQHDEEL
>CP032869.1|AYL96639.1|3892567_3892924_+|hypothetical-protein
MVNRLYKLIALFLMLFSGYSASGRGGLYHYYQKNQKNASVSTETPHNKPFSLAFTLNNPPAPVINVRQHRGAHSIQHFAAFAYNYTLRVKYLDFICGEGSGQLSRFRKLILFPFHDFW
>CP032869.1|AYL96638.1|3891426_3892269_-|TonB-family-protein
MLITKFDLYKSEWLDLVFDHRNKNYGAYELRKTYSSTMTKAMGIAFAAVALLSASTIIFRAKPKPVYDFHEVKLTPPIDIPKPPVEAKPKQPDPPAQAKQPQKIEAPVETKAFTNLRVVPNDPPTDPPTTEELKNVAIGSENVKGAEGTGNVVKPEEGTPGGTGAAPVDNNEVHTLGGLEVMPEPVGGAAAWAKFLQKNLRFPSVAQENGVSGKVLMSFIIEKDGSLSNIKVDRPAGYGFDEEATRVLKLAKAWKPGVQNGQNVRVRYSIPITFQLATEE
>CP032869.1|AYL96637.1|3890888_3891344_+|GNAT-family-N-acetyltransferase
MTTITLKRTTSTDPNFKTLTAELDADLRLRNGEVMDLYDQHNIIEQIDTVIVAYINNVPAGCGCFKYYDNHTVEIKRMYVRPEARGNQVSRRVLNELEAWARELGFRATVLETAGKQVEAQSLYHKSGYERVPNYGPYANLPDSLCYRKQL
>CP032869.1|AYL96636.1|3890447_3890828_-|hypothetical-protein
MRILCFTVFILFFIAVPIYGQEYGAATNATELKVLRLINSLPEVQRENKFRRLHKNPRLLKALIQSTPTKENNYYQVSISEDLGFQLRTYEWYEVDAKTFTIKYFDVASGKSMTLSEKRKLNKKKQ
>CP032869.1|AYL96635.1|3889410_3890226_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKNTILITGASSGIGKATAQLFQAKGWNVIATMRKPENETELTALDNVLVTRLDVLDLDSIKQAVSAGIEKFGKIDVLVNNAGYGAYGPLEAFPRENIVRQFNTNVIGLLDVTLALLPHFRANKSGVIINISSIGGKMTFPMGTLYHGTKFAVEGITESLGFEVEQFGGKVKIVEPGAIATDFAGRSFDFNNDESLTEYQELVNKVMTVLPAMVANASPASVVADVIYEAATDGTNRLRYTAGEDAREIIANRKLADDETFIGGMKAQFGL
>CP032869.1|AYL96634.1|3888905_3889238_-|hypothetical-protein
MDYTLRKALAIEEYLAGGTTSAKLGQKYGFGNASVSRWVVEEKKKNNKIAQRAASLQVAKEREGMPEDIKALQEELRKAQLKIHLLEAMIDISDEQYGTDIRKKAGPRQS
>CP032869.1|AYL96633.1|3888000_3888909_-|IS3-family-transposase
MKVEQSQGCSLSLLCSLSGYSRQAYYKRRLLEERDPIKEELLVQQVIGYRDLQPRIGGRKLFFLMTPFIKAHKLKMGRDHFFRMLGKYGLLNKKRRGKPQTTDSNHWMKKYPDLIKNMVPTRSEQLWVSDITYLELSSEFAYLSLVTDAYSRKIVGFHVSGNLTAEGSILALKMAIEGRQNKEELIHHSDRGTQYCCHDYIKTLQENNIDISMTQSGDPRDNAIAERVNGILKMELLKPSFIDIEDARTAVTQAVNIYNYLRPHSSISMLTPALVHTRKFKLKRLWRNNYKSKPAKREETAG
>CP032869.1|AYL96632.1|3886888_3887797_-|helix-turn-helix-domain-containing-protein
MSTFIHLQTIPDLLKFFRLDQSVRHPLIAIVDFSQVQEEINGVTRLSADFYSLILKNYNRNNVRYGRKLVDFTNGSLICMAPNQIIEMDSDTEAPAEMSGWGLFFHPDLIRATFLHDKMSEYSFFSYEMSEALHISEKEKQVLYNAVQKIEAELQENIDVYSQGIIVSGIEMLLNYCARFYGRQFITRKQSNNTVVAQIGKLLGDYFKRDDIAERGLPTVKYLAEQVYLSPGYLSDLLKKETGKNTQEQIHFYLIEEAKNILLNTNQSVGEIAYRLGFEYPQYFNKLFKQKTGKTPVEFRNM
>CP032869.1|AYL96631.1|3885573_3886716_-|aminopeptidase
MKHITSLLALSAITFTAFAQEPTIKVKLETARPEFTVIKNNQATSVKNQGNSGTCWCFATTSLVESEMIAKKEAAPDLSEVYTVYNLYIDKAEKYIRRRGNTRFTEGGIQQDVMFSTDNFGAMPQEIYPGVGRDTVLNHDGQMETKLKTYLDNLLKTNPDTIPANWKTDYKAILNSYLGAPPESFSYNGKTYTAKSYAAQYVPLKLSGYVGLTSFKHHPYGTTFAIEIPDNYNSNMFYNLPLDQFIASVKTAVMQGYTVAWDADVSNNGFRMGKGLAKWVTKDDETKDFETFTEKTPTADIRQDLFDRQVTQDDHLMQITGMVKDAKGNEYFIVKNSWGTGASPLGGYLYVSVPYFAINTISVVINKKALPTTLLAKVGS
>CP032869.1|AYL96641.1|3894819_3895419_-|DUF4468-domain-containing-protein
MKKILFAFVGLLFSINALAQKDSLALDENNKYIYYKTADQPGAVADTLYDRALSFLTKAYTKKELRLVKADKGGNALNGAGVFVINKKNFFGGNSEGGELAYSIKIEVRDNKYRYWLTDFVYQPYQRNRYGNSEIVHGKDVALEKASEKLSKADFNACLNQVLASSKQVGDKLKTYMLKASTVEHHDVKKVKRVSTKEW
>CP032869.1|AYL96642.1|3895497_3896538_-|porin
MKKVFLLFSFFSIAAFTVKAQDTVKTTPDAPLVIYGSVDTYYKYDFSDKGSQIPTSFASDHNSVSIGMIDLGLKKKVGKAAFVGELSFGPRGQSQSIPNGPDGDSFHIQNLYVSYDLTDKLNITGGYMATFIGYEVISPTGNFNYSTSYLFTNGPFQNPGVKLTYAFSDKVSLMAGIFNDTWNYYTSAKKVNTFGSQLFVSPVKGWTAYINLATGKTSGTEVDLTTAYQITDAFKLGLNGATYSAPDDGGGFSGVALYPQLAVSKVVTLGLRGEYFKTKKGALQTFGPPPGENVTAVTFTAAIKSGPLTFMPEIRLDHGSSESFLNHSGNPSKSAGQFVVAAVYAF
>CP032869.1|AYL96643.1|3896767_3898375_-|ammonium-transporter
MKVGSTKHNFLSSVRQLTREKWALGATIFTGKMIGLLLVFAAMMVIPGMFGTKAHAAETYTAHETTMMDTVNTVWTLVAAFLVFGMQAGFVMLEAGFARKRETVNVLMECIFDTCLCGLLFYAVGYAFMFGKGNGFIGWGGGDGKTWFFLQNTPATYMSTGIPVLAHWIFQYAFADTCSTIVSGAMIGRTSFRGDILYSIGITGFIYPIIGHWAWGPDGFLANMGSSGLFQSISAQPFRDFAGSTVVHTIGGVASLAGAMVLGPRLGRIFARDDKEKGGLPPGHNLLVAAVGGFILWFGWYGFNPGSTLSAMDMQGIGRVAANTTLAACAGGFTAMLAALWFGPTKGKFDLAFTINGFLAGLVAITCPCYWVSPFGAIMLGAISGFIIFGGVYLIEWFRIDDPVGAVSVHGFNGIWGTISLGLFASGQYGATGAYGADNSAPVTGLFYGGGFGVLKAQLIGSLTITLATFVISFVMMYVINKLGHPWKLRIEEHGETGAGGIDVFDHGIEVYPVQDDEISLSGLFDKGAKVASEA
>CP032869.1|AYL96644.1|3898978_3901153_+|glutamine-synthetase-type-III
MSNIRFKALQDVLSRTIPEIKPPSPKISDYFGSNVFDKKKMKEYLSSEAYQGIVNSIEKGEPIPRDLAEQIASAMKAWALGKGATHYTHWFQPLTGTTAEKHDAFFEPTADGGAIERFSGDALAQQEPDASSFPSGGIRNTFEARGYTAWDPSSPAFLMARTLCIPTVFVSYTGEALDYKVPLLKALNVLDKAAVDVCHYFDKGVEKVNASLGIEQEYFLVDLALFNARPDLYLTGRTLFGHMSAKNQQLEDHYFGSIPERVYAYMQDMEAEALQLGIPLKTRHNEVAPSQFECAPIYEEINLAIDHNQLLMDLMDRVAKRHNFKVLLHEKPYAGLNGSGKHNNWSLITNTGKNLLSPGKTPKNNLMFLTFFVNTIKAVYEHADLLRASIASVNNDHRLGANEAPPAIISIFLGSQLSDVLDEIETSRISKKIKEENMLWQGIPKIPQILPDNTDRNRTSPFAFTGNKFELRAVGSSANSASPMTILNLIVADQLKKFKYDVDKLMKKGEKKDLALLMVIKKYIKESKSIRFEGNGYSEEWEKEAALRGLSNIKTTPKALDALINDKAEHLFAESGVFSVREAHARHEILLDSFYKKLQIEARVIGELVMNVIIPSAIAYQSKLIENVKGLKDLGLDKSTYASQLDLINRISEHVNFIKTNTEQMIDERKKANVIDDIRQRAIDYDEKVKTFFQPIRYHVDKLEQLVDDGLWPLPKFRELLFIK
>CP032869.1|AYL96645.1|3901347_3903126_-|CBS-domain-containing-protein
MMLKTLSYKIGRWRLKRNSQRNFLIYCSVFVGFVGGLAAIALKFLVHLMEELSRNISSHLYYHIAYVFLPALGILLTVAYQHIINRDKIEKGIGNILINIKKNRSNIKANNLYSHLITSSLTVGFGGSSGLEAPIVCTGAAIGSNLGKFFKLTPYEKTVLLAAGASAGIAAVFNSPIAGVLFSLEILIGEITIPTFIPLLIASATGVVVSKALYSGQLFHLVTEGWVMAALPFYVVLGLCSGWMAIYIAKVGGKLESGIFKKQNRYVRAISGGVLLGLIIVVFPQLFGEGYHYLTAILNGNIHVLKEEVLFGNLLDEPLIMLLFIAALVFMKIIAAGITIGSGGNGGTFAPTMFTGAFLGLLVAYGVNQTGLIHLNTSNFIAVGMAGALAGVLHAPLTAIFLIAEITGGYVLFIPLMIVSAISYIISRYSSPHNMYWSHLIHHNNIQPGQDYGMLNSISLDSIINRKYTAVDKSMTVTDFYKVLAKTDANIFPVLKDDGSLEGVVLIDDIRRRLFNKEIADSLITDIMIEPPTVIDYEQPASSVMDTFDAIDVWQLPVIKDNRFIGFISKSALLSKYRSVLIEQHKASDLFA
>CP032869.1|AYL99462.1|3903580_3904768_+|phosphoribosylformylglycinamidine-cyclo-ligase
MPMISSQRYDQRGVSASKDDVHNAIKNIDKGIFPKAFCKIVPDILTNDAEYCNIMHADGAGTKSSLAYTYWKETGDISVWRGIAQDAIIMNLDDLLCVGATDNILLSSTIGRNKNIIPGEVIAAIINGTEEILAELREAGIGIYSTGGETADVGDLVRTIIIDSTVTCRMKREDVISNHRIEPGDVIVGLASYGQATYEKEYNGGMGSNGLTSARHDVFNKTIANKYPEAYDAAIPNELIFSGSKNLTDPIEIGNGETVTAGKLVLSATRTYAPIIKQILDGYRSQVHGMVHCSGGAQTKVLHFVEGLHIIKDNLFPVPPLFKLIHEESKTSWQEMYKVFNMGHRMELYVPEAIAADLINISKSFGVDAQVIGRVEKAESKKVTVTSEFGVFEYE
>CP032869.1|AYL96646.1|3904927_3908281_-|TonB-dependent-receptor
MRKHYLLLFIFSLLTLNFAFAQNVTTSSMSGTVVDEKGLPLPGVTITALHTPTGTNYSTVSRVDGRYNLPNIRVGGPYTISFKFIGFNTFTQDNITLSLGQDFKINAKMAPTNTELKEVVVSGVQNKVINTSRTGSQEIINRAQIDRLPTINRSIYDYTKLTPTANGTSFGGRNGNGNNLTVDGALFNNSFGLSNTLGGQANSQPISLDAIEQIQVSVSPFDVSQGRFAGTGINTVTKSGTNEFKGSVYYYKRSAGLTGLHTLTTDVQKPTVDYNQRGISLGGPIIKNKLFFFISGEQERIKDPATSYTALRDGQTAGGSISQVTYKDLTDLSTFLQKNYGYNPGAFENYQLRTQSDKIAAKLDWNIDKNNTLSLKYFYLKSFRDVPPSGSGAPSGGRTPGRANLPFFASYYTINNNFNIGIAELNTRISSTVANKLTVGYQSLRDFRESLGGNPFPMVDIQNPDGTTMTSFGYEPFTANNVLNTDTWQASDNLTVYKGKHELNFGISYESNKFKNGFAPNYYGIYRFKSLADFYASADPNNGLSNAQRATASLYSFRYSALPDGSFPFAYVKSYTVGIYAQDKWTVNDNFKLTYGIRADLPVYNTESQFNASAANLTGFLGGYKVNTAQFPKTSIQISPRVGFNWDVNGDASTQVRGGAGIFTGPVPYVYISNQASNNGVQFGFYNIQPGSAGVSATDPRFIFSGDVNKNRPAAGAASNSYNLVITDKNFKFPSNFRVNLAVDQKLPFGIIGTLEGIYSKDINSVYFTNIALPSTGSNLMGSDNRFRYSSSTAYPVLAAGNTPENPNISDAILMKNTSKGYTYSVTAQLQRTWKEFYFNIAYTHSDARTVNDGGSIAQSTWRDRYVSGDPNSDATSYANFYQPNRVIASMSYRKDYIKHLTTSVGLTFETANNGVASYTYAGDLNGDGQTVNDLMYIPKNASDIILVADNAGDLRTGTKTLLNTNGKDDGGVLYAQLSAYINQDPYLSKRRGKYAERNGLVLPYFNQVNFNFTQDLYATTGKVKNTLQLEFNIINLGNFLNRNWGNYKFVNRASLLSFKGIYNNAANPSDPNNGKPTFSFPYLDNTNQIPLTSTFGNGISQVSRWQAQIGLRYIFN
>CP032869.1|AYL96647.1|3908677_3910069_+|dihydrolipoyl-dehydrogenase
MDYDVIVIGSGPGGYVAAIRASQLGLKTAIVEKESLGGICLNWGCIPTKALLKSAQVFEYLNHSADYGIKINGAGEVDFAAVVKRSRNVADGMSKGVQFLMKKNKIDVLVGFGKLKSKGVVEVKAADGTAKTYNGKHIILATGGRSRELPNLKQDGKKVIGYRQAMVLPQQPKSMIVVGSGAIGIEFAYFYNSIGTKVTVVEYLDNIVPLEDEDVSKSLARILKKQGINIMTGSNVESVDTSGELCKVSVKTATGTETLEAEIVLSAVGIATNLEGIGLEENGVKTDRGKVLVDDFYRTNVEGVYAIGDIVKGQALAHVASAEGIICVEKIAGQNPHPLDYNNIPGCTYCSPEVASVGYTEKAAKEAGYEIKVGKFPFSASGKASAAGAKDGFVKVIFDAKYGEFLGAHMLGYNVTEMIAEVVTARKLEATGHEIIKSVHPHPTMSEAVMEAAAEAYGECIHL
>CP032869.1|AYL96648.1|3910199_3911039_+|MBL-fold-metallo-hydrolase
MKLHTIDTGFFKLDGGAMFGVVPKTIWNKTNPADENNLCTWAMRCLLVEDGDRLTLIDTGIGNKQSEKFFSHYYLHGDASLDSSLKSLGFHRDDITDVFLTHLHFDHVGGAAVREGEALLPAFKNATYWSNPKHWDWAVNPNEREKASFFTENIIPIQESGQLQFIDVKDGVNFGNDFDVRFVSGHTESMMLPLINYKGHKILYMADLLPSTGHLPIPYVMGYDMFPLITLAEKKLFLNEALENDYVLYFEHDPINECCTLQQTEKGIRIKETFKLNEL
>CP032869.1|AYL96649.1|3911271_3912132_+|RNA-polymerase-sigma-factor-RpoD/SigA
MRQLKITQSITNRESQSLDKYLHEIGKVDLITAEEEVILAQKIREGDQAALERLTKTNLRFVVSVAKQYQNQGLTLGDLINEGNLGLIKAAKRFDETKGFKFISYAVWWIRQSILQAIAEQSRIVRLPLNQVGSLSKISKAFSKLEQEYEREPSPEELADILETTVDKISDTLSNSGRHVSMDAPFVQGEENTLLDVLENQEPNTDSILINESLSEEIKRSLSTLTEREREIIVLFFGLGTNHPLSLEEIGEKFNLTRERVRQIKDKALQRLRHTSRSKILKSYLG

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Crispr_ID: CP032869_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032869_9

4292690-4292795

Orphan

Consensus_repeat	Method
ACAGCAGAAGCTGGATTTTGAGCTGAAAGCGGAAGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032869_9

>merge|CP032869|9|4292690-4292795|CRISPRCasFinder
ACAGCAGAAGCTGGATTTTGAGCTGAAAGCGGAAGGCTTAAGGCTTAAAGCAGATATTTAATAAAAACACAGCAAAAGCTGGATTTTGAGCTGAAAGCGGAAGGCT

>CP032869|9|8|4292690-4292795|CRISPRCasFinder
ACAGCAGAAGCTGGATTTTGAGCTGAAAGCGGAAGGCT	TAAGGCTTAAAGCAGATATTTAATAAAAAC
ACAGCAAAAGCTGGATTTTGAGCTGAAAGCGGAAGGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP032869.1\|AYL96958.1\|4289283_4289565_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL96967.1\|4297357_4298494_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187678
CP032869.1\|AYL99475.1\|4289770_4290856_+\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
CP032869.1\|AYL96966.1\|4296269_4297361_-\|Tat-pathway-signal-protein	unknown	unknown	gnl\|CDD\|224563
CP032869.1\|AYL96955.1\|4285197_4285677_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
CP032869.1\|AYL96953.1\|4284399_4284708_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL96954.1\|4284742_4285201_-\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|378053
CP032869.1\|AYL96963.1\|4293849_4294446_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
CP032869.1\|AYL96956.1\|4285848_4286751_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL96970.1\|4300821_4301532_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL96964.1\|4294445_4295384_+\|exonuclease	unknown	unknown	gnl\|CDD\|274995
CP032869.1\|AYL96960.1\|4291874_4292297_+\|DUF1573-domain-containing-protein	unknown	unknown	gnl\|CDD\|377880
CP032869.1\|AYL96957.1\|4286750_4288877_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224031
CP032869.1\|AYL96965.1\|4295617_4296067_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP032869.1\|AYL96968.1\|4299134_4299899_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226081
CP032869.1\|AYL96959.1\|4290917_4291865_+\|transcription-antitermination-protein-NusB	unknown	unknown	gnl\|CDD\|273891
CP032869.1\|AYL99476.1\|4298490_4298898_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
CP032869.1\|AYL96962.1\|4292905_4293850_+\|YbbR-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377947
CP032869.1\|AYL96969.1\|4299991_4300555_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|238985
CP032869.1\|AYL96961.1\|4292309_4292633_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|376903

Protein	Function_ID	Function_description	E-value
CP032869.1\|AYL96967.1\|4297357_4298494_-\|hypothetical-protein	gnl\|CDD\|187678	cd09620, CBM9_like_3, DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily may co-occur with various other domains.	2.92246e-72
CP032869.1\|AYL99475.1\|4289770_4290856_+\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	2.24297e-93
CP032869.1\|AYL96966.1\|4296269_4297361_-\|Tat-pathway-signal-protein	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	7.03778e-16
CP032869.1\|AYL96955.1\|4285197_4285677_-\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	7.74487e-27
CP032869.1\|AYL96954.1\|4284742_4285201_-\|RES-domain-containing-protein	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	1.89096e-24
CP032869.1\|AYL96963.1\|4293849_4294446_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	1.45963e-70
CP032869.1\|AYL96964.1\|4294445_4295384_+\|exonuclease	gnl\|CDD\|274995	TIGR04122, hypothetical_protein, putative exonuclease, DNA ligase-associated. Members of this protein family frequently are found annotated as a putative exonuclease involved in mRNA processing. This protein is found, exclusively in bacteria, associated with three other proteins: an ATP-dependent DNA ligase, a helicase, and putative phosphoesterase.	9.99339e-89
CP032869.1\|AYL96960.1\|4291874_4292297_+\|DUF1573-domain-containing-protein	gnl\|CDD\|377880	pfam07610, DUF1573, Protein of unknown function (DUF1573). These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.	2.14017e-47
CP032869.1\|AYL96957.1\|4286750_4288877_-\|hypothetical-protein	gnl\|CDD\|224031	COG1106, COG1106, Predicted ATPases [General function prediction only].	2.14235e-16
CP032869.1\|AYL96965.1\|4295617_4296067_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	5.89993e-13
CP032869.1\|AYL96968.1\|4299134_4299899_-\|hypothetical-protein	gnl\|CDD\|226081	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown].	5.29326e-07
CP032869.1\|AYL96959.1\|4290917_4291865_+\|transcription-antitermination-protein-NusB	gnl\|CDD\|273891	TIGR01951, nusB, transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. [Transcription, Transcription factors].	5.66781e-22
CP032869.1\|AYL99476.1\|4298490_4298898_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	6.38455e-58
CP032869.1\|AYL96962.1\|4292905_4293850_+\|YbbR-like-domain-containing-protein	gnl\|CDD\|377947	pfam07949, YbbR, YbbR-like protein. The members of this family are are all hypothetical bacterial proteins of unknown function, and are similar to the YbbR protein expressed by Bacillus subtilis. One member is annotated as an uncharacterized secreted protein, whereas another member is described as a hypothetical protein in the 5'region of the def gene of Thermus thermophilus, which encodes a deformylase, but no further information was found in either case. This region is found repeated up to four times in many members of this family.	0.000929681
CP032869.1\|AYL96969.1\|4299991_4300555_-\|adenylyl-sulfate-kinase	gnl\|CDD\|238985	cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.	5.93494e-55
CP032869.1\|AYL96961.1\|4292309_4292633_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|376903	pfam02699, YajC, Preprotein translocase subunit. See.	4.01966e-31

>CP032869.1|AYL96961.1|4292309_4292633_+|preprotein-translocase-subunit-YajC
MIATILLQAGGLGQYGQLVPMVLIIVVFYFFMIRPQVKKQKDQKKYVEELKKGDRVITNAGIHGRIIDVNDNTFLVEVDNGKIRFDKSAISLEASKALNTPVVEKKA
>CP032869.1|AYL96960.1|4291874_4292297_+|DUF1573-domain-containing-protein
MKKLFLSLVAAGLLLSACNGAGSGSKADSSAKTANAPVAKFEKESHDFGKITEGDSVHYDFKFTNTGKSPLIITNARATCGCTTPTWPKAPVKPGESGVISVTFNSAGKSGLQDKQITVTANTIPAETMVHLIGEVLKKK
>CP032869.1|AYL96959.1|4290917_4291865_+|transcription-antitermination-protein-NusB
MLNRRHLRVKVLQALYAYHQSDTKDVKLFEKNMLHSIDQVYEMYIWMLSLIGEVVSFSENDAQERANKHLPTADDLNANLKILTNRFILSLNDNKEYIQAKKKYKVDWNFEPELAKTLFISLRNSPEYAEYLAKTGDTLQTDKDIIKFIFKKVILKSSLAEQVFEDMFIFWPVDKDVLQALIAKTFKNFSHDDYKLNQLAEITGNWVEDREFVVNLFQQSVRYDGAYQELIAAKTQNWEPERIAMMDTLLMKMAITEFINFNSIPVKVTINEYLEISKEFSTPKSNSFINGILDKILIELKAENKIKKIGRGLIE
>CP032869.1|AYL99475.1|4289770_4290856_+|Glu/Leu/Phe/Val-dehydrogenase
MPEQHLPESIFNELNAFGHKKVVFCSDPDTNLKAIIAIHDTTLGPAFGGVRMWAYRTEGEALDDVLRLAKSMTYKAAIAGLNLGGGYSVIIGDSRQDKTEALLRKYGRFVKNLNGEFIAAEDVGTNPRDMEYIKMETSHVTGAPENIGGSGDPSPITALGVLMGIKACTREMYGSDSLTGKSVIVQGIGHVGENLVRLLRDENVKVYASDINEERVIQISKKYGAQPVSNNSIFDIDADIYAPCAMGGTVNTQTIAKLKCGIIAGSANNQLLDEKVHGQMLVDKGILFAPDYVINAGGIITGYSELMNFNKKRTLQLTENIYEATRNVLKLSKAENISTINAANKIAEKRIEDIRKVKSSY
>CP032869.1|AYL96958.1|4289283_4289565_-|hypothetical-protein
MKTYIIKNTGGISLSEFYDCLNKGGKIVIYGYCISLIALTYRLISPPHLIRPGESQSKFKRHYNTLSLIFGWWGFPWGPIYSIDMIKVNAKNG
>CP032869.1|AYL96957.1|4286750_4288877_-|hypothetical-protein
MESKRIIRHIDRLLLDPNNYRFIDRPEYKHVPDSELGDSRVQLRTLNFLLGKNNDNISDLLSSFKTNGFLDIDQIQVKPVGDNYLVLEGNRRTATLKYLYEEFKKGNDVGKLAESDFKSVNLVNIENEDPVQHLVTMGLHHISGKKRWSAVNEAQLIDDLLHIHQRSENDICESLGIKKHALRRSMRSLGLIQQYKQSDYGDQFQSDMYSIFEAVVGNSTMKRWVDWNDNQYAALNERNIDRFFSWISETEDNEWNDEGRERPMKREPIITQYRQVKEVASFIFDEKALTRMEDSRSINEGYIFSDAVGEVKLRDSIDNLKSFTQVAYNFKDLINEVDVDELAKIRTKIDEIIPVAKDLISLNEKRAAIYFAEIGRQFTEININSYRKLHNIKISNIKQVNIFAGGNNKGKTSVLEAIYLLSQLNDITSFLELEKFRGKFLSEFHSKWIEKNFVNEIGIAGTFNGINTNIQIRKETTEENIERTGYLNTLVSDSEVENQYLSSYIHLFSNKEPQLHYSKTNILCTAAFTSPYRYNEVLLHSAHKTAIENKYFDKVIGFINEYLDPDIQKIDLVNDDGENRFRVTSWRHDKAVDLTTYGEGLQRVFEIALLLGYCRDGILCIDEIDSALHKSLLVNFTEFLQRTAAEFNVQVFISTHSKECIDAFVENEYPDNDLTAYSLTEEDGHIVCRFLAGTKLKQLVESINLDIR
>CP032869.1|AYL96956.1|4285848_4286751_-|hypothetical-protein
MANQIITVLCEGPHDVAFICRILKSIGYKSNEGVKIGDYPRPFDALLKREATKTDIEQLNLTELRRNLLPSNVLLRGENHVFLYSLGGDGKADTRQRILIELRSLIVEEGEIIADRNNNAVLSLLYFFDSDNHGVMTRLSHINAEIKAALPEEITADLFTKNGDKTNVSKLKLGAFIFTGEDNNTGKLEDILVPLMRLGNERLFEAANVYLSEHHEENRLFPLKLNVGDNGITESRSVRQKEKGKFDDKKSLIGTVGQLQLSGKSNVVCISDSDYLSLDKMLENDKCIKIMQFFELFAGA
>CP032869.1|AYL96955.1|4285197_4285677_-|DUF2384-domain-containing-protein
MKSVFHSRKLNIADLAVKKPAEESIIPFFFSGSEVVSGDGDIIDHIRDGLPKQAIDNVLEKTGVSKTQLSNILHISTRQLNRYEKDDRLSPEQSNFLYEFTRIYVRALDILGDAETVTKWLMRPNMALGDKQPIDLLDTGEGLRMVDDLLAQIEYGFYS
>CP032869.1|AYL96954.1|4284742_4285201_-|RES-domain-containing-protein
MILYRITREKYAQDLSGRGGLLSAARWHDHVPVIYSSVNSSTAILEVLVHLQPEEIHNDLMIMSIVVPDDVISEELAIAELPAGWNNYPAPAILKQIGNAWLASKSALLLYIPSVIDPLAKNVLINPLHSDATQLKIGELQPFTFDKRLIKR
>CP032869.1|AYL96953.1|4284399_4284708_-|hypothetical-protein
MKVIRVQYTTTAQYAPINQQNIAGIVAELKTLNHPGIKYGAWLLPDGKTFMHFDQCESEEAHNVLTSLQSFKKFADELHASGLEVEPELELLSLVASTETYY
>CP032869.1|AYL96962.1|4292905_4293850_+|YbbR-like-domain-containing-protein
MAIVKLSATERRRLSVFFTCLALAVVAWIFTTLSDPIPYTIREVLLFKNAPQKRAFHSLQPDTVNVTIRGTGWQMLFSKMNGDSKPLTVDLRTLENRNYVVLSSQLKQIDAGKEGISQVIAIDPDTLYFDFSNRLVKKVPVQLLSGVSYQKQFAVSGNITIKPAYITVSGPVERLKEITSWKTDSLKLSGINETVNARVNLQPSSEGNLNIYPKSVQVIIPVDEFTEKTLEIPVKLINNNYTDVKVFPQKIKVTFTTSLSRYPDMNEDLFEAIADLDLWRYKGYSTLPVKLIRIPPFCKVVKIEPANIDFIIKK
>CP032869.1|AYL96963.1|4293849_4294446_+|dephospho-CoA-kinase
MLKVGLTGNIGSGKTTIAKVFELLGIPVFYADDEAKKVMVTDEVLIAGIKQAFGSEAYFDDGNLNRKYISNIVFNNKAELEKLNALVHPAVFRAFARFDAQHHEAPYVIREAAILFESGSYKMCDRAIMITAPLETRINRVIARDHLTRADVESREARQMPQEEKLKLANDVIINDGKQLVIPQILRLHELYLSLARN
>CP032869.1|AYL96964.1|4294445_4295384_+|exonuclease
MILDDFVSFDEKGLYCKYGDFHLDPQQPAKTAIISHAHADHAVSGNTNVYCTRATASIMQLRYDRTAAKVFNIAEFNKPFVIGGVTITLIPAGHMLGSAQILMEYQGTRYLYTGDYKLQPDATCEPIEWVTTDVLITESTFADPAVIHPDPVAEISKINNIKTNILLGAYALGKSQRLINLITEHAPQKKILVHHKIMPINAIYEKMGFSPGRYQIYGRKLMKVQDEFVYIVPPFTFDSYIRATGVKRLFASGWKNLQVNNQDTLFISDHVDWNDILQTITNTKPKQVWTLHGKGNHLQAYLKDDIFVKILN
>CP032869.1|AYL96965.1|4295617_4296067_+|MarR-family-transcriptional-regulator
MRIEDEIQSTNFEDNYHKVAINVAYTQGWLANYFRCHFEKHNITQQQFNILRILRGQYPKPATINLLKERMIDKMSDASRIVDRLVQKGLVSRCTNNKDRRAVDIRISEEGLATLSKMDSEFKTKEVLSQNLTEDEAATLSDLLDKLRG
>CP032869.1|AYL96966.1|4296269_4297361_-|Tat-pathway-signal-protein
MNKREFLKAGLLAGVASQLPLAGNAAVETAKSSRKKAMKNWVWINPNPKDTDDELSTRYTAFKESGITGVFFEADSERHFRAAKAKGLEAHRWMWTFNRAELVTEKPEWYSKNRKGESCADHPPYVQYYRWLCPSRPEVQEYLTKTVDDILAKDYIDGIHLDYVRYCDVILPVNLWDHYKLDQTKELPEYDFCYCEVCKAKFKEQYNLDLDQIQYPEASLSWRLFRYNNITRVVNGISAVAHQHKKQITAAVFPTPEVARRNVRQDWTNWKMDGICPMIYHGFYKEGVSWIGDAVAEGVHFLAGKFPLYAGLYLSDFKNDEQIRTGIQVALKNGAMGVSFFGNVRPEVLAILKDEVAVFKASS
>CP032869.1|AYL96967.1|4297357_4298494_-|hypothetical-protein
MSLSFLSLRHYIKAGCIAVLLILPGLAKAQDAFSEFANLFTVPNNYVVRHTKQAPVIDGDVEDAVWQQAKWTADFQDIEGDLKPKPPLQTNVKILWDDSCLYVAARLYEPQVWATLSHHDDIIFRDNDFELFIDPANNTHNYYEIEVNALNTIFDLFLTRPYRNNTTAVTGWDTHGLRSAVKVQGTLNEAADIDKGWTVEMAIPIKSVTGGFGRANVKHGTVWRINFSRVEYDTRVVNGKYVKLQDTAGRDLPEHNWVWSNQGLINMHFPERWGYLFFSNHEADDVSFEMPYAEEQKRYLWLIYYKQKQWQQKHGEYAVSLKKLGIDSKVAVTGSNNELKLEATPHQFIAYITDTNTKQTYTINQDGLVQPKLTPKLK
>CP032869.1|AYL99476.1|4298490_4298898_-|EVE-domain-containing-protein
MQHWLVKSEPFKYSWEKFNKDGRTFWDGVRNYQARNNLRAMQEGDLVLFYHSNEGKEIVGVAKVVREAYQDPTTDDANWVVVDLSPVETLKTPVTLEQIKADPKLQDIGLVKQGRLSVMGLKREEFDYILELGSK
>CP032869.1|AYL96968.1|4299134_4299899_-|hypothetical-protein
MAYKCGLQTGEQLAAGNHGNVEGHFEDVEFLKMHEEILADHNLPISGLTIEHIDSFTPYEKAKLQSIIKVKQQLYDQWGWKDPRTCLFLDVYKELLPGACYLVILRDYQSVVSSLLRREFKYFDNKYMKRGLLQRLAWIYVRKPKRINKFYQANAAEFLKVWIAYNHDILTCIEKLPAENYAVINYSMLKQHDEPVFNQLKNKWNFAISYSRFKDVFKEHLIGPDIDIERYIDDKEMIEQAKMLQGRLKEYLLK
>CP032869.1|AYL96969.1|4299991_4300555_-|adenylyl-sulfate-kinase
MILLFCGLSGAGKSTLAKSVAAELKDLNIKAEIIDGDEYRAALCRDLGFSKEDRNENIRRLGFVASRFSAQGIVTIVSAINPYDDIRRELAEKYDHVSIVHIDCPVNKLIDRDTKGLYKRALLPDGHPDKLNNLTGINDRFDVPVNPNLYIDTCNYTIRQSTSSLLYYIINNLQPVKKHTFKIPSYS
>CP032869.1|AYL96970.1|4300821_4301532_+|hypothetical-protein
MRAIVFYNYFEPYTLNQFSQMNEFKITGGGYIGNAKATWPLATLNVTANMLSINLGFAGQVFFNAGDITSIEPASGLSGSGIRINHTVSSYPQKIVFITSTPYNNIIENIKATGLFNKEVVHDQSVQYQVKKLQEQGRFPIKTAAIIVFIVGWNVPILIGFINNNIDGFFDYAPVSLSFAFLFIVLTLFVEPFRLWVLKENRDIKDLRTTFYFLLIIVSAIFAFSLVFKHLPPAHR

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Crispr_ID: CP032869_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032869_10

4360114-4360253

Orphan

Consensus_repeat	Method
TTAGAGATTAGTTTGATTTTCGTTATAAAAGAAAAAAGGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032869_10

>merge|CP032869|10|4360114-4360253|CRISPRCasFinder
TTAGAGATTAGTTTGATTTTCGTTATAAAAGAAAAAAGGTTGATACGAGGCCTAACCTCTGATCTCTTAAGTTGTCATTAGTGATTAGAAGTTGGAGATTAGAGATTAGTTTGATTTTCGTTATAAAAGAAAAAAGGTTG

>CP032869|10|9|4360114-4360253|CRISPRCasFinder
TTAGAGATTAGTTTGATTTTCGTTATAAAAGAAAAAAGGTTG	ATACGAGGCCTAACCTCTGATCTCTTAAGTTGTCATTAGTGATTAGAAGTTGGAGA
TTAGAGATTAGTTTGATTTTCGTTATAAAAGAAAAAAGGTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP032869.1\|AYL97016.1\|4354407_4356882_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
CP032869.1\|AYL97030.1\|4374159_4375863_-\|mucoidy-inhibitor-MuiA-family-protein	unknown	unknown	gnl\|CDD\|379285
CP032869.1\|AYL97021.1\|4360305_4361979_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|223809
CP032869.1\|AYL97028.1\|4371238_4372546_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
CP032869.1\|AYL97022.1\|4362146_4362803_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP032869.1\|AYL97011.1\|4349420_4350266_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|238806
CP032869.1\|AYL97026.1\|4368027_4368636_-\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	unknown	unknown	gnl\|CDD\|225687
CP032869.1\|AYL97017.1\|4357216_4358176_+\|DUF2219-family-protein	unknown	unknown	gnl\|CDD\|378338
CP032869.1\|AYL97027.1\|4368951_4370949_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|376906
CP032869.1\|AYL97013.1\|4351064_4352588_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP032869.1\|AYL97012.1\|4350500_4350884_-\|DUF4783-domain-containing-protein	unknown	unknown	gnl\|CDD\|379759
CP032869.1\|AYL97025.1\|4365774_4367754_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238624
CP032869.1\|AYL97015.1\|4353389_4354034_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
CP032869.1\|AYL97024.1\|4363416_4365324_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223112
CP032869.1\|AYL97029.1\|4372651_4374151_-\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
CP032869.1\|AYL97019.1\|4358801_4359479_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
CP032869.1\|AYL97023.1\|4363044_4363317_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL97018.1\|4358313_4358730_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
CP032869.1\|AYL97020.1\|4359634_4360093_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|238613
CP032869.1\|AYL97014.1\|4352574_4353141_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP032869.1\|AYL97016.1\|4354407_4356882_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
CP032869.1\|AYL97030.1\|4374159_4375863_-\|mucoidy-inhibitor-MuiA-family-protein	gnl\|CDD\|379285	pfam13598, DUF4139, Domain of unknown function (DUF4139). This family is usually found at the C-terminus of proteins.	8.23688e-81
CP032869.1\|AYL97021.1\|4360305_4361979_-\|MFS-transporter	gnl\|CDD\|223809	COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism].	2.93861e-57
CP032869.1\|AYL97028.1\|4371238_4372546_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	3.74232e-147
CP032869.1\|AYL97022.1\|4362146_4362803_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.50744e-09
CP032869.1\|AYL97011.1\|4349420_4350266_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|238806	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.	1.3207e-146
CP032869.1\|AYL97026.1\|4368027_4368636_-\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	gnl\|CDD\|225687	COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair].	1.35585e-43
CP032869.1\|AYL97017.1\|4357216_4358176_+\|DUF2219-family-protein	gnl\|CDD\|378338	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219). This domain, found in various hypothetical bacterial proteins, has no known function.	4.86176e-68
CP032869.1\|AYL97027.1\|4368951_4370949_+\|potassium-transporter-Kup	gnl\|CDD\|376906	pfam02705, K_trans, K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.	0
CP032869.1\|AYL97013.1\|4351064_4352588_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP032869.1\|AYL97012.1\|4350500_4350884_-\|DUF4783-domain-containing-protein	gnl\|CDD\|379759	pfam16022, DUF4783, Domain of unknown function (DUF4783). This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. There is a single completely conserved residue F that may be functionally important. Recent structures show this domain has an NTF2 fold.	1.57645e-24
CP032869.1\|AYL97025.1\|4365774_4367754_-\|amidohydrolase	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	7.62653e-50
CP032869.1\|AYL97015.1\|4353389_4354034_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.73806e-10
CP032869.1\|AYL97024.1\|4363416_4365324_-\|amidophosphoribosyltransferase	gnl\|CDD\|223112	COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism].	5.93756e-44
CP032869.1\|AYL97019.1\|4358801_4359479_+\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	3.07567e-108
CP032869.1\|AYL97029.1\|4372651_4374151_-\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	1.77732e-104
CP032869.1\|AYL97018.1\|4358313_4358730_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	9.85648e-39
CP032869.1\|AYL97020.1\|4359634_4360093_-\|cytidine-deaminase	gnl\|CDD\|238613	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.	1.28764e-49

>CP032869.1|AYL97020.1|4359634_4360093_-|cytidine-deaminase
MTTKPSFDQIFMNLATDLAERSHCVKAHVGAVLTRDTRIISIGYNGPPAGTHNCDVEWPETGCARDSKGSCSLALHAEENAILYAVKNGARLEGATLYTTLSPCLPCARLIYSAGITQVYFDKSYAEYKGLPSDEGVDFLNRFGVKAEKFDR
>CP032869.1|AYL97019.1|4358801_4359479_+|(d)CMP-kinase
MSNNIVVAIDGYSSCGKSTIAKALAKELNFIYVDSGAMYRAVALYFIRHNIDLQNHAQIAEALHNIHLNFQTLNNKTFITLNEEDVSEEIRQMHVAEKVSTVAAIKEVRVALVKQQQRLGRSKNIIMDGRDIGTVVFPDAQVKLFMTADPKVRAERRYKELLPTNPNITLEEVFDNLAHRDYQDTTREESPLTRAEDAIILDNTDLSQDEQLMFALSHIEPFIAE
>CP032869.1|AYL97018.1|4358313_4358730_-|aminoacyl-tRNA-hydrolase
MNFTKTDLQKETVYKTSRSGGKGGQNVNKVSSKVELLFSITTSALFTDEEKQTLTEKLQNRLNKDGYVQVICDEERSQYLNKEKAIERLMVLLTKALHKPKVRKPTKVSKAAKAARLDNKKMQSAKKEGRGRRFDVSD
>CP032869.1|AYL97017.1|4357216_4358176_+|DUF2219-family-protein
MLNKLFFTLVCLLGTTCLFAQTRGHEFGIQSDNDSFLGQGSDRYYTNGIFFYYRKALQVNPAQKELQNKVLGFELGQKMFNPQSGYVRGPFDIDRPFAAYTYIGSTLNFLYKNESNLKLGAQLGVVGPAAGGEPVQKLIHNTFGFYHLNGWQYQIKNDVELNLSAEYNKLLARAGWIDLSFASYANLGTGFTGAGAGGLIRLGSFNQLFNSISTQSTVSTGGEEQLMHKHEIFFYYKPLANVVGYDATIQGSLFRKHDDPNSMEITTAKNTFILSQQVGVAFTTSRFAFDVAAIFHTKDAPDMRRSHQWGSITGFYRFK
>CP032869.1|AYL97016.1|4354407_4356882_+|endopeptidase-La
MSFDPFDFKHALPVINEDSEFFPLMSSEDEEEMNNEELPDIMPILPLRNTVLFPGVVIPITVGRDKSIKLIRDANKGSRMIGVVAQQDVGIEDPTFSQLNKVGTIALIIKMLQMPDGNTTVIIQGKKRFYLKEEVQSEPYIKATVEPFHEIKGKEDKEFKAMVSSIKDMAMNIIQLSPNIPSEAGIAIRNIESTSFLINFISSNMNADMAAKQHLLEIANLRERANLVLEHLTLDLQMLELKNQIQTKVRVDLDKQQRDYFLNQQLKTIQEELGGNTPDLEIDSLRQRAAKKKWAKEVKDHFNKEIEKLARTNPAAADYSVQINYLELLLDLPWNEFTKDNFDLKRAQRILDKDHFGLDKVKQRIIEYLAVLKLKHDMKAPILCLVGPPGVGKTSLGKSIAKALGRKYVRMALGGIRDEAEIRGHRKTYIGAMPGRIIQSIKKAGASNPVFILDEIDKVGNDFRGDPSSALLEVLDPEQNGTFYDHYVEMDYDLSNVMFIATANSLSTIQPALLDRMEIIEVNGYTIEEKVEIAKQHLLPKQREAHGLKIKDISLKADVLEKLIVDYTRESGVRSLEKKIGSVVRGIAKNIAMEEPYNSTVNKKDIEKILGAPIFDKDLYEGNEVAGVVTGLAWTSVGGDILFIEASLSPGKGRLTLTGSLGDVMKESVTIALAYLRAHASTFNINPKLFDQWDVHVHVPAGATPKDGPSAGITMLTALVSAFTQRKVKPNLAMTGEITLRGRVLPVGGIKEKILAAKRANIKEVILCKSNQKDILEIKEDYIKDLNFHYVTDMRDVIKLALLDEKVKDALDLTVKEDEKSVVN
>CP032869.1|AYL97015.1|4353389_4354034_-|hypothetical-protein
MKLSVIIPFLIMSTLETALGQNAYVRLGQQALMDGDFRSAVAHLEKACITDSTNANAMWMLGYSYYHSDNYKKSIVAYTKVIAVKPADATAYYYRARAKGYLGRDNQASPADKELYLLGAIIDLTKAISINSDLKDNKYYQNRGIAYRDYGNFKLQNTSRFYDKARGLNSLKAAIADLEKVLADNPSRMDIATLIDQSKDKLIQATTGNTLVKH
>CP032869.1|AYL97014.1|4352574_4353141_+|hypothetical-protein
MYWFNPKNIRKAALSGGFLLLITFVFSCRPDNRQSGAKMVYFDLKAFFRADSSRLAGLNPAVVKTVTHNGVTETKTVHIGNWSQELNLFIQSDINRPAWKNSYSVSTSDSAIIYKALTPELKTRRIIIKKAGEKVQWVLIYNHTKNLLYETNEKLSYFPDSLYQIEKSQHVKLMGRNDYKVQGTLPKR
>CP032869.1|AYL97013.1|4351064_4352588_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MENKKKLALIILDGWGYGRNDQSNAIIAAKTPFFDSLIRQYPNSKLEASGTAVGLPAGQMGNSEVGHMNLGAGRVVYQELGRIHKAVDDNELPTIPVLKDAFEYAKQNNKNVHFIGLVSDGGVHSHIRHVKGLCDAAKQLEVPNVYIHAFLDGRDTDPKSGLGFITDLEEHIAGTNAKIASAIGRYYAMDRDNRWERVKLAYDLMVNGIGAPTENITDLIKHSYLEDVTDEFVKPIVAVDAEGKPLAVIAEGDVVICFNFRTDRGREISLALTQKSFPEYNMHPLAIRYITMTPYDETFKNVQIVFNKEDLTKTLGEILQNAGKSQIRIAETEKYPHVTFFFSGGREKEFVNEKRLLVPSPKVATYDLQPEMSAAGIRDAIIPELEAGWPDFVCLNFANTDMVGHTGVFSAVVTAAETADSCTKAVVEAGLANGYSFIILADHGNADYMINEDGSPNTAHTTNLVPCIVIDKDVKEVKDGKLGDVAPTILSILGVEIPAEMTGNVLV
>CP032869.1|AYL97012.1|4350500_4350884_-|DUF4783-domain-containing-protein
MKLSYLPSVILLLLLPLASMADGIDNVANLLKAGNTKELSKLFAPSIEITIMDSENTYSQTQAAVILDKFLAKNKPKSIKSLHKVNSGGNYHFGVYLLNTDTGEFRVAITLKDNSVVELKIEDEKVK
>CP032869.1|AYL97011.1|4349420_4350266_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MDKQLIHQFIKDTLAEDVGDGDHTSLSTIPAEATGKAKLLVKDDGILAGVELAAEIFYIVDPNLKLTVFINDGAAVKYGDVAFEVEGSSRNILTAERLVLNCMQRMSGIATKTRQIVDLLKDTDTKVLDTRKTTPGLRYLEKWAVRIGGGVNHRFGLYDMILIKDNHVDYAGGIRQAIENANQYLKGSNKELAIEIEVRNIDELEQVMQTGNVNRILLDNFKFDDLREAVKIVNGRYITEASGGITIDNIREYAECGVDYISVGALTHSVKSLDLSLKAVK
>CP032869.1|AYL97021.1|4360305_4361979_-|MFS-transporter
MEQKNAKNYGTALYTLITVFFFWGFLAASNGIFIPFCKEHFHLTQFESQLIDFTFYGGYFIGSLILYFASQASKVDIMNKLGYKNGIILGLVISAVGALGMIPAVASGSFGFILAVFFIIAVGFSLQQTAANPFVVALGPPETGSNRLNFAGSINNIGALLGPVVVSVVLFGSATAKTAAADVKISSINNLYYLLAGLFIAVAAFFWFSNLPKVTSDEKIESSSKANTPLMIMFVAFLLVLAADPLSAYINKLLASDPSNVVDIVKSQYFVYASLAIIVFTLIGTIFAAKKSKEGWGAMQYPQLILGMLAIFTYVGTEVTIQSNMGSLLKTPEFGSFAESDIAPYISLYWGSLMIGRFAGSIDAFNLSKSVKYILYILIPFLAFGIVLLVNVFSGANVSHLYAYAICVAILIVAFFIGQQKPTRTLSVLGLLGVAFMLAGLFTTGKVATFAFISGGLCCSIMWPSIFSLAITGLGKYTSQGSAFLIMMILGGSIIPPLQGKIADGAANVVPGMSGIHFSYIVPVLGFAYLAYFAWKVSRELRNQGIDLDHVEVKGGH
>CP032869.1|AYL97022.1|4362146_4362803_+|LysE-family-translocator
MIKAIVSGIGFGLVLTFITGPVFFALIKTSIEKGFHAGVSLALGVVCSDVVFVGAILFGSQYIDVSDHTKVIAGVVGAAILFALGLYYMFKKSEINYENKVPSSADRFGYVLKGFLMCIFNPTLLFHWTVVIGAASTTFIVGTPHRSLHIAIMFLTILIIQFGMDTLKAFYANKLRDRISVKFIHRLNEVAGIALIIASLVLIDRLVTHFVFSAPAGS
>CP032869.1|AYL97023.1|4363044_4363317_-|hypothetical-protein
MKSKFRYTAYFNSVISVFALFLFAVGFFRFVSKPDTPVLLFTGICTFLAFVWIWILFGELKTKIIRLDIEEGEVYVKRYLRFRYYRSLSC
>CP032869.1|AYL97024.1|4363416_4365324_-|amidophosphoribosyltransferase
MSDQIKHECGVAFIRLLKPLSYYQKKYGTALYGLNKLYLLMEKQHNRGQDGAGVATIKLDIEPGKRYISRHRSMASNAVADIFEYIQKKFAEIQKETPEKLADAEWLKEHVSFTGEVLLGHLRYGTHGKNSIESCHPFLRQNNWMTRNLVIAGNFNMTNVDELLEQLYALGQHPKEKADTVTVLEKIGHFIDTENQGLFDQYKREGLDDNREISKLIANDMDVAKILRKSAKNWDGGYTIAGILGHGDAFVMRDPAGIRPAYYYYNDEIVVAASERPAIQTAFNIPMDDIREIRPGHALIVKKNGKITEDMFSEPKERKACSFERIYFSRGSDAAIYRERKQLGRLLCPQILDFVDHDIKNTVFSYIPNTAEVAFYGMVEGMHKYVKKYQHEELVKLGADITEEKVAEILQVAPRVEKIAIKDVKLRTFITQDADRSEMVAHVYDTTYGLIKKGTDTLVVLDDSIVRGTTLKQSILKILDRLGPKKVVVVSSAPQIRYPDCYGIDMSRMGEFVAFEAAISLLKEQDREDIILDVYQKCKDSQKLPKEEVENYVKAIYAPFTDQQISDRIAKIITPKNVNCEVQVIYQTLDNLHIACPENLGDWYFSGDYPTPGGNKVVNRAFVNWMEGKNQRAYM
>CP032869.1|AYL97025.1|4365774_4367754_-|amidohydrolase
MKKPLLLFTAALAFFTNAKAQTDLPVDSTTFYLHKFEQHIGKETYYVRKHKDAITYTIDFKFVDRGSPVPLKTEMKVNPVGDPIELIIKGNTSRFSTIDDKVSIRGSEASIKVNDSSYTKKIPALSFPIGGYSPATVQQLLIQYWNRHKRPANITTLPFGSVQIKAVGIDQLSFKGKTLLLNRIVIGGLVWGNEIIWTDKQGNLIALMTNDAEGDKTEMMRAEYEELLPELIGKAAAVGMQLFAKEAAPKGKADKIIAITGGNVIDVNTGTTLPGAVVLIENGIIKAVGKPADVKIPAGAKIIDAKDKTVLPGLWDMHAHFEQAEWGPAYLAAGVTTVRDCGNEFSYINAIKAAIDDGKGVGPNIIKAGIIDGKGPVALGIIQADTKEEAIKAVDRYKENGFGQIKIYSSVKPAIVKAICDEAHRLGLTVTGHIPDGMTLQQGVDSGMNMVNHIQYVYSIMKRDKNRAIVFDDSVSKAAVKFIKDHNVVIDPTVGVFELAFRSTKDDITKLEPNYNTLPLPLQALFVNMGLGPEQAAKLHPAYKSMKNAVKVLYDAGIPIVAGTDMGFPGYSLDRELELYVEAGLTPLQAIKTATITPATVMGMAKSTGSVEAGKQADVVIVDGDPLKNISEIRKVSVVIKNGMIYSPVALHRMVGFKR
>CP032869.1|AYL97026.1|4368027_4368636_-|alpha-ketoglutarate-dependent-dioxygenase-AlkB
MDLFNNDDVNVFGQGQNLLPFDGEVLLFPYFFKEDVFARLVEETPWKQDKMKIYGREIDFPRLTAWYGESDEVYVYSGVVNVPVRFSPLLNEIKLAAQQQSGHQFNTALLNYYRNGNDSMGWHSDDESELGINPVIASVSFGAARTFQFKHKRQKDAKVSVELNNGDLLIMQGGTQHNWLHQVPKTAKKPGPRINITFRKIG
>CP032869.1|AYL97027.1|4368951_4370949_+|potassium-transporter-Kup
MNSHTKHLTFAGMIVTLGIIFGDIGTSPLYVFQTLLVEGGKVNTDLVLGSISCIFWTLTLQTTFKYIVITLQADNKGEGGIFSLYALVRRYGKWLAIPAIIGAGTLLADGIITPPISVTSAIEGLNLVPALSNVIVPGNNLILGIVIGIILLLFFFQQFGTKVVGSAFGPVMLMWFVMLGVLGTMQVVHYPSIFKALNPYYGIHLLMEHPKGFWLLGAVFLCTTGAEALYSDLGHCGRKNIQVSWIFVKTTLILNYLGQGAWVLSQAPGKDFTGVNPFFEIVPHAFLLPAVALATLATIIASQALISGSFTLISEAVSMNFWPRITIKYPSNIRGQIYIPSINWMLCIGCILVSMYFRTSAAMTAAYGFSITIAMLSTTILMYYFMRYVKHWPVWLVTIILCLFVTVEFSFFVANAVKIVKRLFFVGFEVGLIFTMYTWFRARKINNRFLNFIDIKEKLPLLNALSADTTVNKYATHLIYLTKANNSKQIEEKIIYSIMSRRPKRADTYWFVHIERTDEPYTMEYSVDQIEPGKVIRVEFRLGFRIQPRVNVLFRKVVEDMVDRGEIDITSNYPSLKEHGMAADFRFVIMEKFLSYNNIFNVSEAFILNSYFAIKKLAQSEAKAFGLDTSETRIEKIPLVVKPVNNIHIKRIDDPVDSLMAELAD
>CP032869.1|AYL97028.1|4371238_4372546_-|ammonium-transporter
MKRYFPFFLILVILSLTFIFPSVDFKNSGNPQFNTGDIAWMLMSTALVLIMTPGLAFFYGGMVNKKNVISTMLQSIVCMVIITVMWGIFGFSLAFGDSFHGLIGNPSTFFMMKGMLGNATWKAAPTIPLLLFAMYQLKFAIITPALITGAFAERIRFNSYIIFLVLFSIFIFSPLAHCTWHPDGILAKFGVLDFAGGTVVHMSAGWAALASALYLKRRNEANHAPARITYVMIGTGLLWFGWFGFNAGSAFGANALAVTALATSTTASAAAGVTWIFFDMLLGRKPSAMGTCIGAVVGLVAITPAAGFVSVPHSMAIGIISAIVSNLVVEWRTRTSIDDTLDVFPCHGVGGMVGMLLTGVFASKQVNSLNGTGNGLFFGETHLFIVQLVALVCVSIFAFFGSLLLLKITDMISPLRVSAEEEEQGLDLSQHGEKL
>CP032869.1|AYL97029.1|4372651_4374151_-|NADH-quinone-oxidoreductase-subunit-NuoN
MHNLLPHIPAQLNDVFGSIPYFMPEIYLTVLFLAVLMADLAVGRRSVEFCKVLACGGLVVVILKDVSQLSLVHDASHALFSNMLLLSGASVHMKLIVDVLSFILLLYFTWDDKLKAHTKGLSDLYTISIASVLGLHLMAMAINLLSVYLAIEMVSLASYLMVAYRTETGLSAEAGLKYVLFGAASSAIMLYGISLLYGFSGSLDLLFDNTIVQLSKVNEASASVALLLLLIGIGFKLSFVPLHFWVPDVYQGAPTPVTAYLSTVPKIAAFGLLVNILPPFLSATSWKGINVGQVLSAVGIITMIAGNFAAVLQNNVKRMLAYSSIGHTGFALMAIVTFSAQGLTALIYYLAVYALANIGALALVSYFSNILNAEDVESYKGLGLKYPVASVCFVIILISLTGIPVTAGFTAKLFVFSAVYSVYEQTHSVWMLALMITGALTTVVSLFYYLKIPLYLFLKRTENAEVASEKSYNLLVLAVIVSFLLILLGIFPDLLIKHL
>CP032869.1|AYL97030.1|4374159_4375863_-|mucoidy-inhibitor-MuiA-family-protein
MFQHKFIYGKVPAQASFVCRADNTADDKITEHLYLTHQFMFRRVSIAVAFIFFATTTRADDGQKVQSKVQKVTVFLHGAQVSRTAQVNISPGTYDLVFDGLSPNLEVQSIQVHAAGDFSILSVKTGLNYLDAEAADREKQVGELKLKLKAVTDKINLQDNLLVVYQTEEAVLTKNQFVRPENQNLDVAKLKQALDFQTERLTQLKSKTYVVRNLMYDLEEEQKSIEKQIAALSVDKSVASAKVIVTVSSKTTLQSAFVISYFIYNASWYPSYDIRAKDVKSPLSIAYKANVSQKSGEEWKNVKLTLSTGSPSLNNIKPELGPNYLNFENRYRGGSGSVSEVVSGYAANKATMGYTVPVEVSMVENQTNVEFNIANPYSVTNDGKSCQVEINNVTVDASYRYYAAPKLNANVFLVAQVNDWSKYNLLSGEAGIYFEDTYVGKSQIDTRTMNDTLNLSLEIDKGILVKRVPEKIFTEKQVFGTAKKETRNWVIEVKNRKNQPVSLLIEDQVPVSTNKEIEIETQETSGAKPDAATGKVSWNFVLNSQEGKKLRLKYQVKYPKDQSVIVQ

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Crispr_ID: CP032869_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032869_11

4367921-4368020

Orphan

Consensus_repeat	Method
ACTAATCTCTATTCTCCAATCACTAATCTCTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032869_11

>merge|CP032869|11|4367921-4368020|CRISPRCasFinder
ACTAATCTCTATTCTCCAATCACTAATCTCTTAATATTAAGCGCGCAAAGAGGCTAAGACGCAAGGACTAATCTCTATTCTCCAATCACTAATCTCTTAA

>CP032869|11|10|4367921-4368020|CRISPRCasFinder
ACTAATCTCTATTCTCCAATCACTAATCTCTTAA	TATTAAGCGCGCAAAGAGGCTAAGACGCAAGG
ACTAATCTCTATTCTCCAATCACTAATCTCTTAA

Protein	Signature genes	Signature genes Name	Protein_function
CP032869.1\|AYL97016.1\|4354407_4356882_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
CP032869.1\|AYL97030.1\|4374159_4375863_-\|mucoidy-inhibitor-MuiA-family-protein	unknown	unknown	gnl\|CDD\|379285
CP032869.1\|AYL97021.1\|4360305_4361979_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|223809
CP032869.1\|AYL97028.1\|4371238_4372546_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
CP032869.1\|AYL97022.1\|4362146_4362803_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP032869.1\|AYL97031.1\|4375870_4377475_-\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|235622
CP032869.1\|AYL97026.1\|4368027_4368636_-\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	unknown	unknown	gnl\|CDD\|225687
CP032869.1\|AYL97034.1\|4380409_4380997_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|235637
CP032869.1\|AYL97017.1\|4357216_4358176_+\|DUF2219-family-protein	unknown	unknown	gnl\|CDD\|378338
CP032869.1\|AYL97027.1\|4368951_4370949_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|376906
CP032869.1\|AYL97033.1\|4379864_4380413_-\|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl\|CDD\|235844
CP032869.1\|AYL99480.1\|4377480_4379508_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
CP032869.1\|AYL97025.1\|4365774_4367754_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238624
CP032869.1\|AYL97024.1\|4363416_4365324_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223112
CP032869.1\|AYL97029.1\|4372651_4374151_-\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
CP032869.1\|AYL97019.1\|4358801_4359479_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
CP032869.1\|AYL97023.1\|4363044_4363317_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL97018.1\|4358313_4358730_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
CP032869.1\|AYL97032.1\|4379562_4379868_-\|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl\|CDD\|180218
CP032869.1\|AYL97020.1\|4359634_4360093_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|238613

Protein	Function_ID	Function_description	E-value
CP032869.1\|AYL97016.1\|4354407_4356882_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
CP032869.1\|AYL97021.1\|4360305_4361979_-\|MFS-transporter	gnl\|CDD\|223809	COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism].	2.93861e-57
CP032869.1\|AYL97028.1\|4371238_4372546_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	3.74232e-147
CP032869.1\|AYL97022.1\|4362146_4362803_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.50744e-09
CP032869.1\|AYL97031.1\|4375870_4377475_-\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|235622	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed.	1.94536e-166
CP032869.1\|AYL97026.1\|4368027_4368636_-\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	gnl\|CDD\|225687	COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair].	1.35585e-43
CP032869.1\|AYL97034.1\|4380409_4380997_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|235637	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI.	5.92357e-34
CP032869.1\|AYL97017.1\|4357216_4358176_+\|DUF2219-family-protein	gnl\|CDD\|378338	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219). This domain, found in various hypothetical bacterial proteins, has no known function.	4.86176e-68
CP032869.1\|AYL97030.1\|4374159_4375863_-\|mucoidy-inhibitor-MuiA-family-protein	gnl\|CDD\|379285	pfam13598, DUF4139, Domain of unknown function (DUF4139). This family is usually found at the C-terminus of proteins.	8.23688e-81
CP032869.1\|AYL97020.1\|4359634_4360093_-\|cytidine-deaminase	gnl\|CDD\|238613	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.	1.28764e-49
CP032869.1\|AYL97032.1\|4379562_4379868_-\|NADH-quinone-oxidoreductase-subunit-NuoK	gnl\|CDD\|180218	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK.	2.99659e-29
CP032869.1\|AYL97025.1\|4365774_4367754_-\|amidohydrolase	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	7.62653e-50
CP032869.1\|AYL97033.1\|4379864_4380413_-\|NADH-quinone-oxidoreductase-subunit-J	gnl\|CDD\|235844	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J.	3.63065e-26
CP032869.1\|AYL97024.1\|4363416_4365324_-\|amidophosphoribosyltransferase	gnl\|CDD\|223112	COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism].	5.93756e-44
CP032869.1\|AYL99480.1\|4377480_4379508_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
CP032869.1\|AYL97019.1\|4358801_4359479_+\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	3.07567e-108
CP032869.1\|AYL97029.1\|4372651_4374151_-\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	1.77732e-104
CP032869.1\|AYL97018.1\|4358313_4358730_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	9.85648e-39
CP032869.1\|AYL97027.1\|4368951_4370949_+\|potassium-transporter-Kup	gnl\|CDD\|376906	pfam02705, K_trans, K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.	0

>CP032869.1|AYL97025.1|4365774_4367754_-|amidohydrolase
MKKPLLLFTAALAFFTNAKAQTDLPVDSTTFYLHKFEQHIGKETYYVRKHKDAITYTIDFKFVDRGSPVPLKTEMKVNPVGDPIELIIKGNTSRFSTIDDKVSIRGSEASIKVNDSSYTKKIPALSFPIGGYSPATVQQLLIQYWNRHKRPANITTLPFGSVQIKAVGIDQLSFKGKTLLLNRIVIGGLVWGNEIIWTDKQGNLIALMTNDAEGDKTEMMRAEYEELLPELIGKAAAVGMQLFAKEAAPKGKADKIIAITGGNVIDVNTGTTLPGAVVLIENGIIKAVGKPADVKIPAGAKIIDAKDKTVLPGLWDMHAHFEQAEWGPAYLAAGVTTVRDCGNEFSYINAIKAAIDDGKGVGPNIIKAGIIDGKGPVALGIIQADTKEEAIKAVDRYKENGFGQIKIYSSVKPAIVKAICDEAHRLGLTVTGHIPDGMTLQQGVDSGMNMVNHIQYVYSIMKRDKNRAIVFDDSVSKAAVKFIKDHNVVIDPTVGVFELAFRSTKDDITKLEPNYNTLPLPLQALFVNMGLGPEQAAKLHPAYKSMKNAVKVLYDAGIPIVAGTDMGFPGYSLDRELELYVEAGLTPLQAIKTATITPATVMGMAKSTGSVEAGKQADVVIVDGDPLKNISEIRKVSVVIKNGMIYSPVALHRMVGFKR
>CP032869.1|AYL97024.1|4363416_4365324_-|amidophosphoribosyltransferase
MSDQIKHECGVAFIRLLKPLSYYQKKYGTALYGLNKLYLLMEKQHNRGQDGAGVATIKLDIEPGKRYISRHRSMASNAVADIFEYIQKKFAEIQKETPEKLADAEWLKEHVSFTGEVLLGHLRYGTHGKNSIESCHPFLRQNNWMTRNLVIAGNFNMTNVDELLEQLYALGQHPKEKADTVTVLEKIGHFIDTENQGLFDQYKREGLDDNREISKLIANDMDVAKILRKSAKNWDGGYTIAGILGHGDAFVMRDPAGIRPAYYYYNDEIVVAASERPAIQTAFNIPMDDIREIRPGHALIVKKNGKITEDMFSEPKERKACSFERIYFSRGSDAAIYRERKQLGRLLCPQILDFVDHDIKNTVFSYIPNTAEVAFYGMVEGMHKYVKKYQHEELVKLGADITEEKVAEILQVAPRVEKIAIKDVKLRTFITQDADRSEMVAHVYDTTYGLIKKGTDTLVVLDDSIVRGTTLKQSILKILDRLGPKKVVVVSSAPQIRYPDCYGIDMSRMGEFVAFEAAISLLKEQDREDIILDVYQKCKDSQKLPKEEVENYVKAIYAPFTDQQISDRIAKIITPKNVNCEVQVIYQTLDNLHIACPENLGDWYFSGDYPTPGGNKVVNRAFVNWMEGKNQRAYM
>CP032869.1|AYL97023.1|4363044_4363317_-|hypothetical-protein
MKSKFRYTAYFNSVISVFALFLFAVGFFRFVSKPDTPVLLFTGICTFLAFVWIWILFGELKTKIIRLDIEEGEVYVKRYLRFRYYRSLSC
>CP032869.1|AYL97022.1|4362146_4362803_+|LysE-family-translocator
MIKAIVSGIGFGLVLTFITGPVFFALIKTSIEKGFHAGVSLALGVVCSDVVFVGAILFGSQYIDVSDHTKVIAGVVGAAILFALGLYYMFKKSEINYENKVPSSADRFGYVLKGFLMCIFNPTLLFHWTVVIGAASTTFIVGTPHRSLHIAIMFLTILIIQFGMDTLKAFYANKLRDRISVKFIHRLNEVAGIALIIASLVLIDRLVTHFVFSAPAGS
>CP032869.1|AYL97021.1|4360305_4361979_-|MFS-transporter
MEQKNAKNYGTALYTLITVFFFWGFLAASNGIFIPFCKEHFHLTQFESQLIDFTFYGGYFIGSLILYFASQASKVDIMNKLGYKNGIILGLVISAVGALGMIPAVASGSFGFILAVFFIIAVGFSLQQTAANPFVVALGPPETGSNRLNFAGSINNIGALLGPVVVSVVLFGSATAKTAAADVKISSINNLYYLLAGLFIAVAAFFWFSNLPKVTSDEKIESSSKANTPLMIMFVAFLLVLAADPLSAYINKLLASDPSNVVDIVKSQYFVYASLAIIVFTLIGTIFAAKKSKEGWGAMQYPQLILGMLAIFTYVGTEVTIQSNMGSLLKTPEFGSFAESDIAPYISLYWGSLMIGRFAGSIDAFNLSKSVKYILYILIPFLAFGIVLLVNVFSGANVSHLYAYAICVAILIVAFFIGQQKPTRTLSVLGLLGVAFMLAGLFTTGKVATFAFISGGLCCSIMWPSIFSLAITGLGKYTSQGSAFLIMMILGGSIIPPLQGKIADGAANVVPGMSGIHFSYIVPVLGFAYLAYFAWKVSRELRNQGIDLDHVEVKGGH
>CP032869.1|AYL97020.1|4359634_4360093_-|cytidine-deaminase
MTTKPSFDQIFMNLATDLAERSHCVKAHVGAVLTRDTRIISIGYNGPPAGTHNCDVEWPETGCARDSKGSCSLALHAEENAILYAVKNGARLEGATLYTTLSPCLPCARLIYSAGITQVYFDKSYAEYKGLPSDEGVDFLNRFGVKAEKFDR
>CP032869.1|AYL97019.1|4358801_4359479_+|(d)CMP-kinase
MSNNIVVAIDGYSSCGKSTIAKALAKELNFIYVDSGAMYRAVALYFIRHNIDLQNHAQIAEALHNIHLNFQTLNNKTFITLNEEDVSEEIRQMHVAEKVSTVAAIKEVRVALVKQQQRLGRSKNIIMDGRDIGTVVFPDAQVKLFMTADPKVRAERRYKELLPTNPNITLEEVFDNLAHRDYQDTTREESPLTRAEDAIILDNTDLSQDEQLMFALSHIEPFIAE
>CP032869.1|AYL97018.1|4358313_4358730_-|aminoacyl-tRNA-hydrolase
MNFTKTDLQKETVYKTSRSGGKGGQNVNKVSSKVELLFSITTSALFTDEEKQTLTEKLQNRLNKDGYVQVICDEERSQYLNKEKAIERLMVLLTKALHKPKVRKPTKVSKAAKAARLDNKKMQSAKKEGRGRRFDVSD
>CP032869.1|AYL97017.1|4357216_4358176_+|DUF2219-family-protein
MLNKLFFTLVCLLGTTCLFAQTRGHEFGIQSDNDSFLGQGSDRYYTNGIFFYYRKALQVNPAQKELQNKVLGFELGQKMFNPQSGYVRGPFDIDRPFAAYTYIGSTLNFLYKNESNLKLGAQLGVVGPAAGGEPVQKLIHNTFGFYHLNGWQYQIKNDVELNLSAEYNKLLARAGWIDLSFASYANLGTGFTGAGAGGLIRLGSFNQLFNSISTQSTVSTGGEEQLMHKHEIFFYYKPLANVVGYDATIQGSLFRKHDDPNSMEITTAKNTFILSQQVGVAFTTSRFAFDVAAIFHTKDAPDMRRSHQWGSITGFYRFK
>CP032869.1|AYL97016.1|4354407_4356882_+|endopeptidase-La
MSFDPFDFKHALPVINEDSEFFPLMSSEDEEEMNNEELPDIMPILPLRNTVLFPGVVIPITVGRDKSIKLIRDANKGSRMIGVVAQQDVGIEDPTFSQLNKVGTIALIIKMLQMPDGNTTVIIQGKKRFYLKEEVQSEPYIKATVEPFHEIKGKEDKEFKAMVSSIKDMAMNIIQLSPNIPSEAGIAIRNIESTSFLINFISSNMNADMAAKQHLLEIANLRERANLVLEHLTLDLQMLELKNQIQTKVRVDLDKQQRDYFLNQQLKTIQEELGGNTPDLEIDSLRQRAAKKKWAKEVKDHFNKEIEKLARTNPAAADYSVQINYLELLLDLPWNEFTKDNFDLKRAQRILDKDHFGLDKVKQRIIEYLAVLKLKHDMKAPILCLVGPPGVGKTSLGKSIAKALGRKYVRMALGGIRDEAEIRGHRKTYIGAMPGRIIQSIKKAGASNPVFILDEIDKVGNDFRGDPSSALLEVLDPEQNGTFYDHYVEMDYDLSNVMFIATANSLSTIQPALLDRMEIIEVNGYTIEEKVEIAKQHLLPKQREAHGLKIKDISLKADVLEKLIVDYTRESGVRSLEKKIGSVVRGIAKNIAMEEPYNSTVNKKDIEKILGAPIFDKDLYEGNEVAGVVTGLAWTSVGGDILFIEASLSPGKGRLTLTGSLGDVMKESVTIALAYLRAHASTFNINPKLFDQWDVHVHVPAGATPKDGPSAGITMLTALVSAFTQRKVKPNLAMTGEITLRGRVLPVGGIKEKILAAKRANIKEVILCKSNQKDILEIKEDYIKDLNFHYVTDMRDVIKLALLDEKVKDALDLTVKEDEKSVVN
>CP032869.1|AYL97026.1|4368027_4368636_-|alpha-ketoglutarate-dependent-dioxygenase-AlkB
MDLFNNDDVNVFGQGQNLLPFDGEVLLFPYFFKEDVFARLVEETPWKQDKMKIYGREIDFPRLTAWYGESDEVYVYSGVVNVPVRFSPLLNEIKLAAQQQSGHQFNTALLNYYRNGNDSMGWHSDDESELGINPVIASVSFGAARTFQFKHKRQKDAKVSVELNNGDLLIMQGGTQHNWLHQVPKTAKKPGPRINITFRKIG
>CP032869.1|AYL97027.1|4368951_4370949_+|potassium-transporter-Kup
MNSHTKHLTFAGMIVTLGIIFGDIGTSPLYVFQTLLVEGGKVNTDLVLGSISCIFWTLTLQTTFKYIVITLQADNKGEGGIFSLYALVRRYGKWLAIPAIIGAGTLLADGIITPPISVTSAIEGLNLVPALSNVIVPGNNLILGIVIGIILLLFFFQQFGTKVVGSAFGPVMLMWFVMLGVLGTMQVVHYPSIFKALNPYYGIHLLMEHPKGFWLLGAVFLCTTGAEALYSDLGHCGRKNIQVSWIFVKTTLILNYLGQGAWVLSQAPGKDFTGVNPFFEIVPHAFLLPAVALATLATIIASQALISGSFTLISEAVSMNFWPRITIKYPSNIRGQIYIPSINWMLCIGCILVSMYFRTSAAMTAAYGFSITIAMLSTTILMYYFMRYVKHWPVWLVTIILCLFVTVEFSFFVANAVKIVKRLFFVGFEVGLIFTMYTWFRARKINNRFLNFIDIKEKLPLLNALSADTTVNKYATHLIYLTKANNSKQIEEKIIYSIMSRRPKRADTYWFVHIERTDEPYTMEYSVDQIEPGKVIRVEFRLGFRIQPRVNVLFRKVVEDMVDRGEIDITSNYPSLKEHGMAADFRFVIMEKFLSYNNIFNVSEAFILNSYFAIKKLAQSEAKAFGLDTSETRIEKIPLVVKPVNNIHIKRIDDPVDSLMAELAD
>CP032869.1|AYL97028.1|4371238_4372546_-|ammonium-transporter
MKRYFPFFLILVILSLTFIFPSVDFKNSGNPQFNTGDIAWMLMSTALVLIMTPGLAFFYGGMVNKKNVISTMLQSIVCMVIITVMWGIFGFSLAFGDSFHGLIGNPSTFFMMKGMLGNATWKAAPTIPLLLFAMYQLKFAIITPALITGAFAERIRFNSYIIFLVLFSIFIFSPLAHCTWHPDGILAKFGVLDFAGGTVVHMSAGWAALASALYLKRRNEANHAPARITYVMIGTGLLWFGWFGFNAGSAFGANALAVTALATSTTASAAAGVTWIFFDMLLGRKPSAMGTCIGAVVGLVAITPAAGFVSVPHSMAIGIISAIVSNLVVEWRTRTSIDDTLDVFPCHGVGGMVGMLLTGVFASKQVNSLNGTGNGLFFGETHLFIVQLVALVCVSIFAFFGSLLLLKITDMISPLRVSAEEEEQGLDLSQHGEKL
>CP032869.1|AYL97029.1|4372651_4374151_-|NADH-quinone-oxidoreductase-subunit-NuoN
MHNLLPHIPAQLNDVFGSIPYFMPEIYLTVLFLAVLMADLAVGRRSVEFCKVLACGGLVVVILKDVSQLSLVHDASHALFSNMLLLSGASVHMKLIVDVLSFILLLYFTWDDKLKAHTKGLSDLYTISIASVLGLHLMAMAINLLSVYLAIEMVSLASYLMVAYRTETGLSAEAGLKYVLFGAASSAIMLYGISLLYGFSGSLDLLFDNTIVQLSKVNEASASVALLLLLIGIGFKLSFVPLHFWVPDVYQGAPTPVTAYLSTVPKIAAFGLLVNILPPFLSATSWKGINVGQVLSAVGIITMIAGNFAAVLQNNVKRMLAYSSIGHTGFALMAIVTFSAQGLTALIYYLAVYALANIGALALVSYFSNILNAEDVESYKGLGLKYPVASVCFVIILISLTGIPVTAGFTAKLFVFSAVYSVYEQTHSVWMLALMITGALTTVVSLFYYLKIPLYLFLKRTENAEVASEKSYNLLVLAVIVSFLLILLGIFPDLLIKHL
>CP032869.1|AYL97030.1|4374159_4375863_-|mucoidy-inhibitor-MuiA-family-protein
MFQHKFIYGKVPAQASFVCRADNTADDKITEHLYLTHQFMFRRVSIAVAFIFFATTTRADDGQKVQSKVQKVTVFLHGAQVSRTAQVNISPGTYDLVFDGLSPNLEVQSIQVHAAGDFSILSVKTGLNYLDAEAADREKQVGELKLKLKAVTDKINLQDNLLVVYQTEEAVLTKNQFVRPENQNLDVAKLKQALDFQTERLTQLKSKTYVVRNLMYDLEEEQKSIEKQIAALSVDKSVASAKVIVTVSSKTTLQSAFVISYFIYNASWYPSYDIRAKDVKSPLSIAYKANVSQKSGEEWKNVKLTLSTGSPSLNNIKPELGPNYLNFENRYRGGSGSVSEVVSGYAANKATMGYTVPVEVSMVENQTNVEFNIANPYSVTNDGKSCQVEINNVTVDASYRYYAAPKLNANVFLVAQVNDWSKYNLLSGEAGIYFEDTYVGKSQIDTRTMNDTLNLSLEIDKGILVKRVPEKIFTEKQVFGTAKKETRNWVIEVKNRKNQPVSLLIEDQVPVSTNKEIEIETQETSGAKPDAATGKVSWNFVLNSQEGKKLRLKYQVKYPKDQSVIVQ
>CP032869.1|AYL97031.1|4375870_4377475_-|NADH-quinone-oxidoreductase-subunit-M
MNLLTLLIFIPVLFALVIVLLPSSQRGSFKYITLLATLIQLGISIYIYLNFKTGAASAGINHEEQFQFVHKLPWIALDLGNMGKMQIDYFVGIDGISVTLLVMSALVMVVATLASWEIKSNLKGFFLLFLLLDMAVMGVFCALDFFLFYLFYELMLLPLYFLIGMWGGIRREYAAIKFFLYTLFGSVFMLLVMVGLYLSVNDPSTGSHTFNIIQMMNPANYTNGSVFSAAAHQTILGMPARTVGFVVLFIAFAIKVPVVPLHTWLPDAHVEAPTPVSIILAGVLLKIGGYGIIRICLGIFPEVASSGAFWIGLIGVVSILYGACNALAQRDLKRLIAYSSVSHMGFVLLGIASQTAEGVSGSVMQMVSHGFLSSMLFFLVGVVYNRVHDRDIYHFRGLGTQMPQYTAFVMVAFFASLGLPGFSAFVAEAFTLAGTFKSPTVNGLLPYWMAVCGSVGILLGAAYFLWTLQRMFFGKVSLKGGEVWKIALTDVNIREKLALIPMAIAALALGLMPSLVFGKINDSVLALIQFLQAK
>CP032869.1|AYL99480.1|4377480_4379508_-|NADH-quinone-oxidoreductase-subunit-L
MICYVLAVVALPLLAALINFWLPAKSKATGLISSLAIVVGCVLSIIVFSKVWNKQPVHMQTLWFTIGQTKVFAGILLNNISVLMLLLVSLIALPVHIYSTAYMKHDDRYGRYFTYLSFFCFSMLALVVIDSLVLFYAFWELVGFSSYLLIGFWFTRDKAVQANKKAFIMNRIGDIGLLSAIIIIFAQFHTFDIATLFSDGGLVFKSIIKDGMWISATNQIPVIWQYVACAGIFMAVAAKSAQFPLHTWLPDAMEGPTSVSALIHAATMVAAGVFLLGRVYPFFTDTELTILAIIGCFTAFMAATIALSQNDLKKVLAYSTISQLGYMTLAMGVGAYGSSLFHLVTHAFFKCLLFLVAGVVIHEMQHIKEENNLDIDPQNIQLMGGLRKKLPVTFIVAVVGSLALIGIPLTSGYLSKDGILIQAFEWSDGRNALLKLVPIGALVTSWLTAFYVTRLIAKVFFGEFKLLKHRPQLKMHISDGGWQYRVPLILLAICSLFPLFSLNPFFYENAWLFESLKPANSLARENIYHTIIPVGVNILSVFVIYFTYTIYTEKRIFRFPQTGFLYRLSYNQWYLDKIYKRAVVKPILGLGKFCFWFDRNIIDGIIHLLDNITRKIAALTAWADKYIVDGFLHAVAALVQSIGNFARKFQNGKVQYYLYSMLLIVLILFVLKILI
>CP032869.1|AYL97032.1|4379562_4379868_-|NADH-quinone-oxidoreductase-subunit-NuoK
MITLTDFLLVGAVLFCTGIYMIVSKRNSIQVLIGIELMLNAAILNLVAFGRFDKLKNGGQVFALFAIVLAAATTAVALAIILNVYRRYKTIDPDEIKNLRD
>CP032869.1|AYL97033.1|4379864_4380413_-|NADH-quinone-oxidoreductase-subunit-J
MSLIRIMFYIMSFIAIASALYAALSKNLVRSIFIFFVTLFALAGLYVIALADFVAVTQVVIYVGGILVLILFAFMLSGRETLNIIQQRKGKFINMGKIPAVILAVLFLAVLVNVILKADADNLPWIKQAIAQKNEITPTSSTIDNIGVNLMTTYLLPFEAISILLLMALVGAAHLSRKEGRA
>CP032869.1|AYL97034.1|4380409_4380997_-|4Fe-4S-dicluster-domain-containing-protein
MQKIINAFTTAWKGLSLTIRHLFVGNTKREVLTVSDTNYFRQLEHGTNTIQYPKQQLPVPEVGRYQLDVEMDDCIVCDLCAKVCPVNCIDIESIKATEAIGQTSDGTTKRLYAAKFDIDMAKCMYCGLCTIVCPTECITMTNQYDKTVFQLSDLVYQFSDMSPEDAAEKRALFDKQQAEKQAAKLAAMKQKEGGA

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Crispr_ID: CP032869_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032869_12

4997786-4997895

Orphan

Consensus_repeat	Method
GCGTCCTTGGCTTCTTTGCGTTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032869_12

>merge|CP032869|12|4997786-4997895|CRISPRCasFinder
CAGAGATTAGTTTCTTTGCGTCCTTGGCTTCTTTGCGTTCTTGATTTTAGAGATTAGTGATTGGAGAACAGAGATTAGTTTCTTAGCGTCCTTGGCTTCTTTGCGTGCTT

>CP032869|12|11|4997786-4997895|CRISPRCasFinder
CAGAGATTAGTTTCTTTGCGTCCTT	GGCTTCTTTGCGTTCTTGATTTTAGAGATTAGTGATTGGAGAACAGAGATTAGTTTCTTA
GCGTCCTTGGCTTCTTTGCGTGCTT

Protein	Signature genes	Signature genes Name	Protein_function
CP032869.1\|AYL97523.1\|4991786_4993067_-\|L-fucose:H+-symporter-permease	unknown	unknown	gnl\|CDD\|340952
CP032869.1\|AYL97534.1\|5010795_5011362_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL97527.1\|4996206_4996923_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
CP032869.1\|AYL97533.1\|5008156_5008840_-\|PorT-family-protein	unknown	unknown	gnl\|CDD\|372635
CP032869.1\|AYL97526.1\|4995415_4996000_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
CP032869.1\|AYL99517.1\|5009035_5010745_+\|glycoside-hydrolase-family-3	unknown	unknown	gnl\|CDD\|366376
CP032869.1\|AYL97528.1\|4996927_4997233_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL97532.1\|5006972_5007998_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL97536.1\|5014799_5016056_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349894
CP032869.1\|AYL97531.1\|5005756_5006653_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379345
CP032869.1\|AYL97537.1\|5016070_5016622_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL97521.1\|4989622_4990399_+\|GLPGLI-family-protein	unknown	unknown	gnl\|CDD\|273495
CP032869.1\|AYL97525.1\|4993961_4995155_-\|DUF2961-domain-containing-protein	unknown	unknown	gnl\|CDD\|378582
CP032869.1\|AYL97524.1\|4993107_4993962_-\|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase	unknown	unknown	gnl\|CDD\|226479
CP032869.1\|AYL97530.1\|5004294_5005680_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223222
CP032869.1\|AYL97538.1\|5016631_5016844_-\|PLDc_N-domain-containing-protein	unknown	unknown	gnl\|CDD\|379161
CP032869.1\|AYL97520.1\|4986806_4989614_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379720
CP032869.1\|AYL97535.1\|5011446_5014614_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
CP032869.1\|AYL97522.1\|4990971_4991760_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181508
CP032869.1\|AYL97529.1\|4997229_4997718_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP032869.1\|AYL97523.1\|4991786_4993067_-\|L-fucose:H+-symporter-permease	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.56275e-133
CP032869.1\|AYL97527.1\|4996206_4996923_+\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	2.93505e-69
CP032869.1\|AYL97526.1\|4995415_4996000_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.49628e-20
CP032869.1\|AYL97538.1\|5016631_5016844_-\|PLDc_N-domain-containing-protein	gnl\|CDD\|379161	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal. This family is often found at the very N-terminus of proteins from the phospholipase_D-nuclease family, PLDc, pfam00614. However, a large number of members are full-length within this family.	0.000134555
CP032869.1\|AYL99517.1\|5009035_5010745_+\|glycoside-hydrolase-family-3	gnl\|CDD\|366376	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain.	9.64292e-74
CP032869.1\|AYL97536.1\|5014799_5016056_+\|M28-family-peptidase	gnl\|CDD\|349894	cd05642, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	1.5543e-158
CP032869.1\|AYL97531.1\|5005756_5006653_-\|hypothetical-protein	gnl\|CDD\|379345	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family. Members of this family of prokaryotic proteins include putative glucosyltransferases, which are involved in bacterial capsule biosynthesis.	7.45541e-34
CP032869.1\|AYL97521.1\|4989622_4990399_+\|GLPGLI-family-protein	gnl\|CDD\|273495	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein. This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif.	1.6363e-44
CP032869.1\|AYL97525.1\|4993961_4995155_-\|DUF2961-domain-containing-protein	gnl\|CDD\|378582	pfam11175, DUF2961, Protein of unknown function (DUF2961). This family of proteins has no known function.	7.64842e-123
CP032869.1\|AYL97524.1\|4993107_4993962_-\|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase	gnl\|CDD\|226479	COG3970, COG3970, Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only].	1.12507e-45
CP032869.1\|AYL97530.1\|5004294_5005680_+\|RNA-methyltransferase	gnl\|CDD\|223222	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].	7.43451e-68
CP032869.1\|AYL97533.1\|5008156_5008840_-\|PorT-family-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	1.17487e-14
CP032869.1\|AYL97535.1\|5011446_5014614_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	4.93919e-93
CP032869.1\|AYL97522.1\|4990971_4991760_-\|SDR-family-oxidoreductase	gnl\|CDD\|181508	PRK08628, PRK08628, SDR family oxidoreductase.	3.88409e-170
CP032869.1\|AYL97520.1\|4986806_4989614_+\|TonB-dependent-receptor	gnl\|CDD\|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	2.22375e-34

>CP032869.1|AYL97529.1|4997229_4997718_-|hypothetical-protein
MNDVIYTIDRNQIHHLVKRLVRNTVKKLSIIAIFVLGTQSLSYHKHVDLIPLILSYVITTIILFGIMLFSVRNRFQKMYYTLRIVLSQEGVEIKGEGIPYKSIRWENLLVKVQKNNVIDLWDDQIANWSRKWSGKGWIRIQPEIENREDLINELMKRGRAVI
>CP032869.1|AYL97528.1|4996927_4997233_+|hypothetical-protein
MEKIQILVVGRHPEILATVVRLVNNNPDWNATGCLSDEEAIAAFGEQDFKVVLLGGGVDEYSENKLNNHFCGLKPEIKIVQHFGGGSGLLSAEIYEALSKN
>CP032869.1|AYL97527.1|4996206_4996923_+|pirin-family-protein
MAQTVLHKANTRGHADHGWLHSYQSFSFAGYYNPDRMHFGALRVLNDDTVDPGMGFGKHPHDNMEIISIPLEGDLEHKDSMNNVAVIKNGDIQAMSAGTGIFHSEYNFDRASEVKFLQIWIYPNKRNVEPRYDQISLNLEDRHNKLQQVLSPNPDDAGVWIHQDAWFHLGKFDKGVSTKYTIKKEGNGVYAFVLNGEVVINGETLNSRDALGIWDTDKFNIEAGTDAEFLLIDVPMKF
>CP032869.1|AYL97526.1|4995415_4996000_+|Crp/Fnr-family-transcriptional-regulator
MPLNLILNNLEKHIHLTHEEQDIFTAYLQPKKIKRKQYLLTYGEVCKYSAFVTSGCLRGYTVDKSGIEHVLSFAPADWWIADMYSLISQKPGIQNIEALEDTDMLLLSKANQEKLYLQIPKFEHFFRILAENSLVASQQRLIDSLSLTAEERYNNFCKRYPTLIDHLPQKQIASYIGVTPEFFSRMKGEMVRKK
>CP032869.1|AYL97525.1|4993961_4995155_-|DUF2961-domain-containing-protein
MILKINFMVKNYFLTICLFVIVASYAKAQQKFNGLDVGLGNLYRVSDAKTRSISPENFTGEKGKGGMATEGTGANAARDLGQTWKVSPSVVIKKHTTFTVAEINGSGAIQHIWMTPTGNWRYSIIRFYWDDETTPSVEVPVGDFFCMGWGKYAPVQSLAVAVNPGSAFNCYWPMPFRKKCRITMENIDDADMVLYYQVDYILTDVPEDAGYFHAQFRRVNPLPYKKDFVLVDSIKGKGQYVGTYIAYGSNKNGWWGEGEIKFFMDGDTKFPTINGTGTEDYFCGSYDFDTHHKDAEGKEKPGTEYTEFCSPYSGLPQVIRGDGHYGIAQRFGLYRWHIADPIRFEKSLKVTIQALGWRHDGRYMPLQDDIASTVFWYQTGEHGPFPKLPSRDELEVN
>CP032869.1|AYL97524.1|4993107_4993962_-|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase
MKLYKLAKGSLLQHNGSSYIIDDEWDKLINRDELAAYLELITTDTTALAADVEAEYLNGKILPPIGNQEVWAAGVTYLRSRDARMEESETGASLYDKVYDAPRPELFFKSLAHRVSGHNGEVYIRKDSDWNVPEPELTLFINSNGRIQGYTIGNDMSSRSIEGENALYLPQAKVYEKSAALGPCLYVTSSPISAETAIGMKIKRNGELIFEDETTVSRIKRSFIELTGYLYSECDFPYGCFLMTGTCLVPPPSFALQVGDVVQISIDHIGTMINTVAINKKHNH
>CP032869.1|AYL97523.1|4991786_4993067_-|L-fucose:H+-symporter-permease
MSKNNTLFAVALITSLFFIWGFALNLNPILIPHLKKACQLNDLQSSLIDSASYIAYFILPIPAAQFMKKYGYKGGIILGLILFAIGAFLFFPAAAVRNYAFFLTALFIVFSGAAFLETAANPYITVLGDPAGAERRINFSQSFNGLAATLAPLIGGNYILSGKVLTDAESSKMSPEQLNEYLNHEASSVQIPFLVIGAVVLVVAFLIYRTHFPPIVEETSEDAMNDHRPLGTRIAELLTIKSLRAGIFAEFLYVGAQAGVSSFFIRYSEKVAGFAEKPASYYLTIASAGFMAGRFIGTLLMRYFNPVKLLITYAVINIFLIALAVTLHGEIAVYALMCTWFFMSIMFPTIFSLSIRGLGAKTKLGSSLVIMGIVGGAIFPVIMGRVSDATHSIQWAYVVPGFCFFGILLFAINNYKVKKLAISGSH
>CP032869.1|AYL97522.1|4990971_4991760_-|SDR-family-oxidoreductase
MNLQLTDKVIIVTGGAKGIGEGIAKVLASEGAIPVIVGRNEADNLKTVQEIESIGGEAHQVVAELTDPKASENAINEVVAKYGRIDGLVNNAGVNDGVGLESGDYKGFIASLHKNVVHYYLMAHYALPELKKSKGAILNITSKTADTGQGNTSGYAASNGGRNALTREWAVELLKYGIRVNALVVAECWTPLYANWIKTLPDPEAKLKEIESKIPLENRMTTAEEIANTVAFLLSPVSSHTTGQLIYVDGGYVHLDRALANA
>CP032869.1|AYL97521.1|4989622_4990399_+|GLPGLI-family-protein
MKKILTLTTLLILTANLLMAQANKHFTFHGVIEYDKTSNVWAMLQKAINKDNETWYQPRYEQYKKNKPQFKVLKSTLKFGNNQTLFTPIEPETPTAGYWSEPMMVSQNSTIFSDFNTGMSTSQKSVFEETFLVKDTTRRIKWKLTGETREIAGYPCRRANGLILDSIYVVAFYTEEIPVSGGPESFNGLPGMILGVALPHENVTWFATKVSELPIDEKSLTAPKKGKAATNKSFMTVLQNAMKDWGTEGKEYLKGFSL
>CP032869.1|AYL97520.1|4986806_4989614_+|TonB-dependent-receptor
MKITFIGLLLLCFGFTTSFAQTGYSVKGKVADTVANSNLINASVSVITAKDSILQKFTRVKDDGTFTISNLNKGKFILVATYPGYADFVERFTLDSAHTTHNFGTVSMLLKERLLKEVIVKGKAAAIKIKGDTTEFNPAAYNIQPNSKVEDLLKQLPGIEVDKDGKITAQGQTVKKVLVDGEEFFGDDPTLVTKNLRADMVDKVQLYDKKSDQAAFTGIDDGVKDKTINIKLKEDKKNGYFGKLDGGLGTDGYYQGQALFNRFKGKQKFSLYGTLGNNGKTGLGWEDNNKYGGGGNMEFGDDGGFYIFGGGGDDLDSFNGRYDGEGKPVARTGGAHYDTKWNGDKESLNTNYKIGSLTVDGTKNTQQQNNFPGNISTVNSDQYNHNYLFRQKLDLNYQVKIDSMQNLKITADGTLRNSNTKSIFNTQTNRLDGSRINTNSRDNSADVDGKVFNATAFYTKKFKKKSRTLSVNFRAGYNDSDSKGFLKSNTTFYDSVGVFARDTTIDQYKVNKSKSTNINTNITYTEPLAKDFTLALSYAISVNNATNDRRTFNKPNTGNTTVYNTLDSVYSSDYKLNQLSNQGGAVFNVQKQKFSFNFGTKVAGVKFKQVDEFGRMADLTRNFTNWYPQASFQYKFSKQSSVRISYNGNTTQPNIDQIQPVRVNTDPLNIQTGNAALKPSFTNRYNISYNSYKVISNQYIWISGSYSTTSNPIVSNVVRDTTTGISTYQSSNLKNRSTNNFWANSYFERKIPGLDINAGFELSASGNTYYNLSNNVLNETKAYNYSGNIRFSKYKERKYDAWISGGPTYTVNSSSLNSALNNNGRGFNAYGGFNIYLPGKFQIGTDGNYTYNAPTKSFPQDFRRFLLNANISRTFLKDALKASITGNDLLNQNTGYNRTGSANVLTQERYTTIRRYFMFSLTWDFNKVGGGAPKK
>CP032869.1|AYL97530.1|5004294_5005680_+|RNA-methyltransferase
MNEHNFPPNFIASLSAENGFDQENFINAHQFEDAPTSIRVNPFKPSAIKNIQHVPWCPDGYYLDARPSFTFDPLFHAGCYYVQEASSMFIDHIFKTINPNNDEAIKVLDLCAAPGGKSTLLNSALNPTDLLVANEIIKTRVPILTDNLNRWGTANTIVTNNDPKDFTRLKSFFDIILVDAPCSGSGMFRKDPEAMNEWSEGNVNLCHQRQERILADIYPALKEDGYLIYSTCSYSHQENEDILDWLCSEFDLESVRIPISNDWGIVETQSPVKKAWGYRFYPGKVKGEGLFASCLRKKENSGNLASFKNNTQQKLPGKELDQVRSYINNPDEFYYFKVNDDWMAINRNHKESLNILQRHLYIKKSGVIIGKLAGKDLIPDHELALSLIINKNAVLQTALNKEQAIQYLRRDNIDLSTDDKGWTLMTYEEHPLGWAKLLPNRINNYYPKEIRILSANPPREW
>CP032869.1|AYL97531.1|5005756_5006653_-|hypothetical-protein
MISIIISSANSALLKQVSKNVEATIGVPFEIVSIDNSRGKKGICEVYNIGMYKAQYEILCFMHEDIRIETQNWGQSIINNFKDNPGLGLLGVIGSAYKTMTPSGWGGLGVNTYYSNLIQHHKFSGEPPIHHYRNPDNVRLAPVACVDGVWMCTTKSVAKEIMFDEINFTGFHVYDLDFSLSVGQKYKVAVTYDVLIAHFSEGRFDERWMMDCLKLHEKWNLMLPVDCQQLTREQRLYNEKATFKHFLQVLEKLRLPISLASKMLSVNNSFLKLDLKLYFKLQFYILKKRLSAYKAQVS
>CP032869.1|AYL97532.1|5006972_5007998_+|hypothetical-protein
MKQQLNGIGCYDNTRIYIFCPAGFATGGPEALHQLGAHLIKQGFNAFMYYYCTPDSVDVVHKNYEKYAVPHVSKLENSSRHIMILPETHLSPLFSLHFNHIRKAVWWLSVVNYYITQKHITDKYRNKRFFKLQNFFGNFPIASFRWFKSKKEVMHICHSYYSQVHLLANGIQPIGRISDYMNSAFFNMVDEDVKKENIILYNPKKNDEFLDSIIARTPNLKWIAIKDMTPVEVAYKMNKAKLYVDFGYHPGKERMPREACIMRCCMIIGRNGSAAFKQDMPIPEEYRFEKKDEEIPEIISQINNCLENYDIVKDDFGPYRAALYREEEEFVADIKKVFIKI
>CP032869.1|AYL97533.1|5008156_5008840_-|PorT-family-protein
MKKLLFLAICLFTVAGSVSAQGYYGPRYRRRPPRPVERRQPQRRYDDFYTPKVGVAVGLNASNTVDAYNSNYSSSGIAGWHAGLTFDVPIIYPLSFAPEVLFSQKGYEANGPDYKFTQRTNYIDVPLLAKFRVVRGFNLLIGPQLTFLTSTKNTYESGLGVQIDHIDNDASHSYVAGVVGVSVDINRNVEIRGRYNIDLGENQPYADQNLPSYRNQVWQIGLGFKFQ
>CP032869.1|AYL99517.1|5009035_5010745_+|glycoside-hydrolase-family-3
MQRNKSRFSHLIIIIFVFFAGDAFAQKESYIQSLSKQNRWVDSVYNKMSRKQRVAQLLFVRAHTNKGQAYADSVGQVIKDQQLGGVVFFQGGPVRQANLINKYQKLAKVPLIITMDGEWGLGMRLDSTISYPYQMTLGAIQDNNLIYKMGQQVAYDFKRLGMQMNLGPDMDVNNNPNNPVINYRSFGDNMYNVAKKGIAYFKGMQDAGLLTSAKHFPGHGDTNVDSHFDLPLLPYGRGRLDSLEMYPFREAINAGISGVMIAHMNIPSLDKTPKLPSTLSRPIITGVLKDSLKFKGLVLSDAMEMKGVTKYFPNGEADVKAFIAGNDIIELSENSDRAINLIRKAVRHGSVSAAEFEERIKKILAAKYWAGLNQYKPTPLANLSQDINSDAAKALVQQLSDAAVTQLKNTTKLNPFLKTAVVSIGVTSPTPFQMEAVRYFPNSRIFIVNKDAPAIELSNILAWLKQYPQIIVGIHDTRLRPQSKLDYNSDVKLMIADLASRKNTAFSVFANAYAIAGLPGLEKAGNLMVCYQMTPELQKSAAKALSGGLKPAGKLPVTINTFFTTGMGL
>CP032869.1|AYL97534.1|5010795_5011362_-|hypothetical-protein
MEKPYQGRTIVEDNVEFITITIPGKRDFLSVSWFFVWMIAWGFIGSAAISDVVDPITHSIRGGMVFWITGWAFMGLMNIKNAIWLIWGREIIEIDKNTFGIAKKNDFLSRDKVYDLKECENFRIRDKYSAADRKYWSIFYYRNDDPGNIAFDYGMKTFSFGEDLREAESRYILDTIKEKGFIPERHFD
>CP032869.1|AYL97535.1|5011446_5014614_+|ATP-dependent-helicase
MQSTFNKYNNKFKEALAGLNPEQMAAVNKMDGPVLVVAGPGTGKTQILAARIGKILTDTDASPNEILCLTYTDAGAVAMRKRLFEFIGPDAYRINIYTFHAFCNEIIQENLEYFGKLNLESLSDLESAMLFRELVDEFPNDHLLKRFTGDIYYDVPRLKTLFSTMKRENWDANMIEQAVNDYLEDLPNREEFIYKRANAKAGIKVGDPKQKDIDAAHDVMKKLLAAVGEYQNYTEKMKARGRYDYDDMIIWVLRAFRDNEEILRKYQERYQYILVDEFQDTSGSQNELLRFLLNYWDTPNVFVVGDDDQSIFKFQGANMKNILDFANDYVESLYTVVLKHNYRSNQQILDISKALIYNNFERLTSQLNLDKALKSSHPRFNDLLVEPLIREYENPDKELVDVSLQIKKLVAGGVPPGEIAVIYRNHAQVEEMIRFLNVQKIQVNTKRKIDVLMDPFGEKIINILRYLAMELDSPYSGDELLFEIMHYDFFNIPPIEIAKASVAVFKENFGTLAYNQPKTSIRRYVNELKPPAQIDLFKPDQQEAMRYLIRNIDDLLKIAVSETLQKLFEKVIAKMGILKYIMQQEDKGSYMQMLTSFFDFLKDESRKKPDISLADLIATIEMMKKHVIRLELNQTIFSENGVNFLTAHGSKGLEFEHVFFIGCDKRTWDSKGRNSGFSYPDTLTQASNDDIAQKEEARRLFYVAITRAKQHLVISYASKDKKGKDQEASQFVGEILASTSLQVQYPKVPEHDMIDFELTQYHEDDKPKVELLDKNYINQLLQNYTLSVTHLSNYLDCPLRFYFQCLIRVPAGKSPSATFGQAVHWALNKTYRQLKDNDNEFLSTENFMREFRWYMARNRDSFTKDEFKLRSAYGEKILPPYYEQNVPHWNKIAVTERSIKNIEVAGVPIKGNMDKIEFEGKQATVVDYKTGKVKNAKEKLMRPTTDLPNGGDYWRQAVFYKILIDHDRQTDWQVISTVFDFVEPDGEGKYYREKFVITPEDVETVTGQIKDTYAQIMAHNFNTGCGKKECDWCHFVKSNFKQADEILGIVAEEEE
>CP032869.1|AYL97536.1|5014799_5016056_+|M28-family-peptidase
MVDEVSSKNIEATIRKLVSFKSRHTLSDTTSKNTGSGAARNWIKAEMEKYAAESNGKMTVQFDTFTQPKSQRVDKPIKLKNVLAILKGTDPNDTRVYLVSGHYDSRINDVMDVNGFEPGANDDASGTALSMELARVMAKRSFPATIIFMTVVGEEQGLYGSANVAKRAKAENWNVDAMLNNDIVGNTYGMETDLKDNRSVRIFSDGVPTAATDKQVAALKSLGGENDSPSRQLARYTKEIGERYVDQLDVKLIYRRDRYLRGGDHLPFLEQGFTAVRITEMNENFNRQHQNIRTENGIEYGDLPDFVDFNYVQKVARMNLSVLANLASAPAQPQNVGVITSDLTNKTKLKWEAPAAGKKPAGYYVLMRETISPYWEKKFYFTDTTATLNYSKDNYFFAVQSVDAEGHESLPVFPKPVR
>CP032869.1|AYL97537.1|5016070_5016622_+|hypothetical-protein
MNYTISLIYASIFNGTEVLVPCLVILNALKIQLADINRQALIYAVNSILLLGSILFTISLLSELFMAYYSQSEYLQFSFSNRLAGPFWLYIWLTGVLSFMILPQILWIRKLRRSLISSIVIVGIWIALYFVKQVLIAYQAWHTELKPSYSEYAIQAIIYLTFLFVAYLLIHQSNNRLYTTKLD
>CP032869.1|AYL97538.1|5016631_5016844_-|PLDc_N-domain-containing-protein
MNKLLFLNIGVPELFLALLYPIMVIYCLIDIIRSTFKDPTNKIIWIIVVILMPCLGSVLYLVIGRGSKIG

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Crispr_ID: CP032869_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032869_13

6780801-6780904

Orphan

Consensus_repeat	Method
ATTCTGTAAATTCTGATTCAGACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032869_13

>merge|CP032869|13|6780801-6780904|CRISPRCasFinder
ATTCTGTAAATTCTGATTCAGACAAAATCGAAAATCCGACATCCGAAATCAACCGGACAAGTATTCCGCTAATTCTAAAATTCTGTAAATTCTGATTCAGACAA

>CP032869|13|12|6780801-6780904|CRISPRCasFinder
ATTCTGTAAATTCTGATTCAGACAA	AATCGAAAATCCGACATCCGAAATCAACCGGACAAGTATTCCGCTAATTCTAAA
ATTCTGTAAATTCTGATTCAGACAA

Protein	Signature genes	Signature genes Name	Protein_function
CP032869.1\|AYL98967.1\|6774340_6775279_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|224151
CP032869.1\|AYL98973.1\|6786350_6786773_+\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
CP032869.1\|AYL98968.1\|6775456_6775930_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|376840
CP032869.1\|AYL99638.1\|6788274_6788577_-\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
CP032869.1\|AYL98970.1\|6778073_6780602_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379720
CP032869.1\|AYL98976.1\|6791218_6792514_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP032869.1\|AYL98972.1\|6784064_6786146_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL98963.1\|6772036_6772543_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375774
CP032869.1\|AYL99637.1\|6783056_6783800_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|273824
CP032869.1\|AYL99639.1\|6790410_6790953_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|376504
CP032869.1\|AYL98974.1\|6786848_6788075_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
CP032869.1\|AYL98975.1\|6788780_6790148_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
CP032869.1\|AYL98969.1\|6775994_6777806_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|213250
CP032869.1\|AYL99636.1\|6780911_6782174_-\|asparagine-synthetase-B	unknown	unknown	unknown
CP032869.1\|AYL98971.1\|6782351_6782879_+\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL98961.1\|6768960_6771351_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP032869.1\|AYL98966.1\|6773991_6774282_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL98962.1\|6771519_6771957_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
CP032869.1\|AYL98965.1\|6773521_6773929_-\|Dabb-family-protein	unknown	unknown	gnl\|CDD\|214884
CP032869.1\|AYL98964.1\|6772721_6773435_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP032869.1\|AYL98967.1\|6774340_6775279_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.81523e-95
CP032869.1\|AYL98968.1\|6775456_6775930_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|376840	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase. This family of proteins are predicted to be SPOUT methyltransferases.	4.69756e-83
CP032869.1\|AYL99638.1\|6788274_6788577_-\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	0.000453231
CP032869.1\|AYL98970.1\|6778073_6780602_-\|TonB-dependent-receptor	gnl\|CDD\|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	1.07876e-89
CP032869.1\|AYL98976.1\|6791218_6792514_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP032869.1\|AYL98963.1\|6772036_6772543_+\|hypothetical-protein	gnl\|CDD\|375774	pfam18347, DUF5606, Domain of unknown function (DUF5606). This is a domain of unknown function found at the N-terminal region of bacterial proteins.	1.79729e-11
CP032869.1\|AYL99637.1\|6783056_6783800_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|273824	TIGR01830, 3-oxoacyl-_reductase_FabG, 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. [Fatty acid and phospholipid metabolism, Biosynthesis].	4.36893e-130
CP032869.1\|AYL98974.1\|6786848_6788075_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	3.67845e-109
CP032869.1\|AYL98975.1\|6788780_6790148_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	2.18533e-180
CP032869.1\|AYL98969.1\|6775994_6777806_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|213250	cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.	1.16433e-69
CP032869.1\|AYL99639.1\|6790410_6790953_-\|signal-peptidase-II	gnl\|CDD\|376504	pfam01252, Peptidase_A8, Signal peptidase (SPase) II.	4.25987e-31
CP032869.1\|AYL98973.1\|6786350_6786773_+\|DUF559-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	2.39798e-30
CP032869.1\|AYL98961.1\|6768960_6771351_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.65932e-51
CP032869.1\|AYL98962.1\|6771519_6771957_+\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	3.11542e-62
CP032869.1\|AYL98965.1\|6773521_6773929_-\|Dabb-family-protein	gnl\|CDD\|214884	smart00886, Dabb, Stress responsive A/B Barrel Domain. The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.	2.53149e-20

>CP032869.1|AYL98970.1|6778073_6780602_-|TonB-dependent-receptor
MKRFYILIALFCFALSAQAQFGVGGGGPSTTGRISGTIVDSLTKKPMDYASVGLYRSGGKSPITGVVTDEKGNFKLDNIKPGKYKLAISFIGYPTKYIDPVETTASKPDAKLGQVLLAPSSHALKEVQVVGQAALIENKIDKIVYNAEKDLTAAGGNATDVLQKVPLVAVDLNGNVSIRGDQNVRVLINGKPSGATSASLSDVLKTIPADQIKSIEVVTSPSAKYDAEGSAGILNIITKQKNVSGFSGSISGGVGTRQNNGNGNINYNHNRLSLSANVGGNSTWPQTSLTSSDQDFFFNDPAQHRSQTSTGTSRVKRHGIIGSVSAGYDFNAFNNLRTSVRLNQGGFDPNSNTDYTRTYFYDPTQNNTYHNNNIGHNTFGGFDWNIDYTHKFKKEGHELSFSTQWSHSKIVTDYTSLFTGLQDPTEFPNLKNNIDGINNEYTFQTDYTLPINKVFKLEAGGKNIIRRIRSVSDYFNPSGADFVYDPVNSNKYSYDQTVWAGYSVLTITLPKGYSVLAGARLENTDIHGEPHNDVQSIQPFDQNYNTFIPSLTLQKALTPTQTLKLAYSKRITRPSLQFLNPFVNKSNPTAQSVGNPLLAPEVSQTVELGYNTFIKSSVINLSAYYKHTTGLIEGLLTNLPGGQEGTITTYQNIGVNNSYGASFFGAVTPIKILTIRGSINAYTYKPTASNQLTNQQTQTSTYFQYNAFLSAQLTLPSNFIAETFAVQNSARRTIQGSNPSFSIFGVGVKKQFMQKKLALGINAIEPFSTYKNFNTDIKTPTFTQSSKFAFPFRSFGITFSYSFGKLSFSNPQQSKKGINNDDMKQGDQGGGQGGGPGTGGGR
>CP032869.1|AYL98969.1|6775994_6777806_+|DNA-mismatch-repair-protein-MutS
MEQTIITDYTQRAAAAAAEASKYKKLANTYSLFRLCVFLMVGVSIAIAIHFDDFSIIAVACVLLVLAFAWLVARQSRFEKQKQYYDDLQRINENEIASIQTHANIYLDGARYADEKHFYTSDLDIYGKASLYQLINRSATTPGSDKLAAWLNAPADKNTALQRQEAVKEIAAKNSWKLDLQTRLVFAVKQDTDQLKNLFKYLRIPLNMPGEKWLSSYAKIAPYLFTALLIAACFYGPAKPAAIAVGLFNMGMVFSKAAYIRKADLIAGKIGSTLTNYAEAFQCIEEQQWQAAYNNALAQQLKTNKTSAKIKELAELINKLNYHLNLIVGFALNLFFLWDIRQIIAIENWKRQNQESLETAFDVIAEFEALMSLSSLAVNYPDWCFPVIDDREGYTLSAKAIAHPLINPAKRIENDYDLENTFKVDIITGSNMAGKSTFLRTIGINTVLALSGAPVCAQSMQVSVITIISYMRIKDSLNESTSTFKAELDRLQMLLTAVQNHPKIFFLIDEMLRGTNSVDKYLGSKAVIEQLISKKAVGMVATHDLQIAQLETKYPDYVRNFYFDIQVVNGEMLFDYKIKHGECKTFNASLLLKQIGIEVNHDA
>CP032869.1|AYL98968.1|6775456_6775930_-|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MKITFLTVGKTEDAYLKEGIDKYVKRLKHYTKLELAEIPELKNTKALSPEQQKAKEAELILKKITPLDFVILMDEKGSEYTSTQFAAYINKKEVTTSANLVFIIGGPYGFDNSVYQRANDKISLSKMTFSHQMVRLFFVEQLYRAYTIMKGEPYHHE
>CP032869.1|AYL98967.1|6774340_6775279_-|cation-diffusion-facilitator-family-transporter
MSAGHDHSHSHGHGHHHHDHVPKLDHLNSAFIWGIVLNSVFVVVEAATGFFTHSLSLLTDAGHNLSDVASLALALLAFKLSKVNANSQYTYGYKRSTIIVSFFNAVILFVAVGFIIYEAVMRFMNPEVVSGGTMAWVAFIGIAINGFTAWLFVKDKDTDLNVKGAYLHMAVDAIVSLGVVLSGVIIYFTNLYWIDSLVSLIIGFVILRGTWSLLTASLRLEMDGVPAEMDIEKIRAELTKCDGVINAHHIHVWALSTTENALTAHLLIKPEAMAKFDDIKHDLRHRMEHLEITHCTFEPEFSEEECKQPECL
>CP032869.1|AYL98966.1|6773991_6774282_-|hypothetical-protein
MSKAKTKTLNVLFIIAILEVIGMIAWPVILGWGQLIGPAGKLLAAIFALPFVYYIIFAGYLKGYYSKRKPEDQNIGLMVFLNVLPLIFLVYILDIF
>CP032869.1|AYL98965.1|6773521_6773929_-|Dabb-family-protein
MKSTRRKFIATSAALAAGTVSASAISLNAQKEEWPIVHHVFFWLKNPGSVEDRDKLVAGVKSLAKIETVRKLRVGIVASTEKREVVDNSWAVSELMFFSDLAGQATYQSHPIHLEFIKNCSHLWEKVIVYDAVDA
>CP032869.1|AYL98964.1|6772721_6773435_-|hypothetical-protein
MKVKHLAICLAVLGFALHLSAAKTKNGSAHHKSITAARAVEGWYFRAVSGYPAAISFEPVVLFKNGEYFDVGDEPVETLNVGAAKSSRPKAWGTWKKTGDTFYLTNNSGKTHDYKLGAGNWFPAYPYTGAIKLKKGYEKVSGGDYGNGTNALVINKINFIDATHFTEGSNGGVMTPGATAWKKTANGGTYKIYGNTIELNYGSKVIRKSFALGATGSPAHATNTMIFIGGDAYTDTE
>CP032869.1|AYL98963.1|6772036_6772543_+|hypothetical-protein
MNLQGIVSVSGKPGLWRALAQNKTGYVLESLDAQKTKLIANLSTAKLAALAEITIFGVDDDIRLTDVLERMKSAANIPDVKADGKALRTFFYEVAPDHDEEKVYSSDIKKVITWFNILKPLPLFDEADPTQAPAPVAEEPVAEAVAVEPEAEPAAPKPKAKKATKKAE
>CP032869.1|AYL98962.1|6771519_6771957_+|peptidylprolyl-isomerase
MSKAIIKTEKGDMTVEFYDQDAPNTVANFKKLAKSNFYDNVIFHRVIPNFMIQGGDPTGTGAGGPGYKIDCELTGNNQYHDRGVLSMAHAGRNTGGSQFFICHNRANTAHLDRNHTVFGKVIENVDVVDAIRQGDKILGIEVIED
>CP032869.1|AYL98961.1|6768960_6771351_+|TonB-dependent-receptor
MYTLNHTYFMRKLFTFLLLLITALKAQSQTTGDLPGTVTDIHGQPIAGATVYLLNTNYSTSADKNGNFTLRHISTGKYTLHISAVGYAAKNIPVNMIGTARPITFQLNDAGNQLDEVTVSAQKVEEQAQRVPFSISTLSARQIQNYRLWDLKDLTAIVPNLNSGAPGDGRTVTGMRGIVTTSYDPAVATYIDGVNQYGLDTYIPALLDVDRIEVLRGPQGTLYGRNATGGVINVITKQPSNAVSGFAGIDIGNFNQQRYTLGIKAPLVKDKLYLGVAGIYSGFNGFYTNTFNNTHFDKQHFFLGNYYLKFLATSKLAFTLNVKNYNNRNNGAFTLAGSPDEALEHPFQVNQNATTRMIDNTFQSSLTANYSGSDFNFTSQTSYQVNNRYYSTPIDGDFSPIDAVSIVNNYGDKWNKVKTTIQEFRFTSPASSTSKLKWAAGTYGFYHYAPNRQGTYFGADAAAVGSPMTNFTSINTNTDRNYGIAVYGQATYAVTEQFDITAGLRYDYEHKKESILGEFQPDGADAIVTRSDTSSTAHYKAFTPKLSLAYHLSAHNNLFASYSRGFRAGGITELGSDPVSTPPLYSFKPEYSNNYEIGSKNDFLDNRLRVNLTAFYTRVTDAQVPTLILPDAITITKNAGKLSSKGVEAEINATPVKGLEIDCNFGYTHARYTTLVVGSNGEEVNLKGNKQIYTPNITSMLALQYGYNLGGPLKTKLIARGEWRYLGDQYFDLANQIEQRHYSKFNARVGVSTKRFGLFFWESNIANKKYIDYAYDFGATHLGNPRTYGVSLNTSF
>CP032869.1|AYL99636.1|6780911_6782174_-|asparagine-synthetase-B
MLVLKYLLPFAFLLLPFFTRAASILIPMDDEQKDHLKSYGIAFWVLKNGEEVDWLLNYRGGSFMLKYGQKIEEECKIRGVSYEVIADAKANEIITEVSDPSVNMDLVKLEKAPKMAVYSPKNKLPWDDAVTLVLKYAEIPYDLVYDEEVIHGELPKYDWLHLHHEDFTGQYSKFYGVYRYAQWYTDDVKVQEAMARKLGFSKVSKMKLAVAQNIRDFCAGGGFLFAMCSGTDTFDIALAAANTDICERMFDGDAADQDAQSKLDFTQTFAFQNFSLDMNPTSHAFSNIDVTTTRQVDRTRDFFTLFDFSAKWDVVPSMLTQNHDKVIKGFMGLTTAYNKSMLKPGVTIMGEMKTGNEARYIHGEYGKGQWTFYGGHDPEDYQHAVNDPPTDLKLHPNSPGYRLILNNVLFPAAKKKKQKT
>CP032869.1|AYL98971.1|6782351_6782879_+|hypothetical-protein
MKKNILLLLIAIITIVMIFPAKAQVITKYGDNVSTLDGIMKAYYDVVTVKKGEKVSYERDSLLHIPDAHVGSGYIDKQGKQKFSYMTLKQYHKLADPSLSQNGFDEREIARRVEKFGSIYHVWSTYESRNTHDGPVTERGINSIELFYDGTRFWILGWFYDGERKDNPIPEEYLK
>CP032869.1|AYL99637.1|6783056_6783800_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MKLLEGKTALVTGASKGIGRKIAEKFAEHGANVAFTYLSSVEKGQALEQELQSFGTKIKGYRSDASKFDEADKLITDIVADFGTIDIVVNNAGITKDGLLMRMTEENWDEVLDVNLKSIFNVTKAASKIMMKNRKGVFINMSSVVGVQGNAGQANYAASKAGIIGFSKSVAKELGSRNIRTNVVAPGFIRTEMTDVLDPKVVEGWAAGIPLKRAGEVEDVANACVFLASDMAAYITGQVIPVDGGML
>CP032869.1|AYL98972.1|6784064_6786146_+|hypothetical-protein
MFSLTWGSVSGWWTPVCLLLGLAYAWLMYRQPAEIGRNLRYGLATLRTIAVFFIALLLVSPLVKSVKYEPQKPLVLIAQDNSSSINTFKPADFNTSTFIDDLAKLKEQLGDKYDVQEFNFDKDLHPGLSKSFGGKQTDIAGALRQLNNRFTNQNIGALVLATDGLYNQGNDPQYDAKNIKTSIYTIALGDTTAKRDLLIGNINYNKTAFLGNDFIIEVLATAYQSKGENMSLSVTEDGKQVYQQSIPVTATDFKKIIPIKLNASKKGLRKYTISIAPIKNELSIQNNTETIYVEVLDARQKVLLLYNGPHPDITVIKQAIETNKNYEVKAASINNAADIKPADYSLVVFYQISAADYPPIKSFIAKSKTPVWYIIGSQSNLQAVNSEQSTVKISAGRAETQEVLALPANDFTAFNLSDSARRKISALPPLLAPFGSYGTSTGTSVLLRQKIGAVATTYPLLAFGDEVGRRTAVLTGEGIWRWQLSEYQNYENQNATNELLSQTVQYLTANANRQRFRVYPARNVFDEGENVILNAELYNDALELVNTPDVKIELKNTAGKNYSYLFTRTGQSYQLDAGALPVGEYTYSASTQNGKQDFKASGQFTIKALNLETRQSAANHVLLNTLAKQSGGQMIKPSDVSKLADLIRKNENVKTVVYEDKHYSDLVDVKWLFGLILVLLSVEWFLRKREGEI
>CP032869.1|AYL98973.1|6786350_6786773_+|DUF559-domain-containing-protein
MTKIIPYNPKLKPLARKLRKDMTFGEILLWNELKEDKLLGFDFDRQRCIDDYIVDFYCKELMLAIEVDGRYHDHEDILIKDNARQAKLESFGVRFLRFTEAELKDDLDNVLRAIEGKMTEIIKEDNSIKLPKGFDMNLLE
>CP032869.1|AYL98974.1|6786848_6788075_+|IS256-family-transposase
MKREEESLEYEQMKKKALEQLRSGKSLYGKDGAFAPLLKSFLDAALEAELESHLDEAERSSGNRRNGKTSKNIRTSDGTISISTPRDRNSSFEPELIRKRETILAESLESKIIGMYGLGMSFRDISKHIKDMYDTDISHSTLSAITDKIIPEVKEWQSRPLDELYTIVWLDAMHYKVKEEHRMVAHAVYNILGIDRHGHKELLGMYVSQSEGANFWLSVLTDLQNRGVKDILIACIDNLNGFPQAINTVFPQTEIQTCIVHQIRNSLKYVASKDQKVFMKDLKPVYQAETLELAELRLEQLEEKWGKKYEKVLESWRNNWSKLTTYFQYDTTIRKLIYTTNTIEGFHRQIRKVTKTKGGFTSDMALLKLIYLAHNNIKQKWTMPLSNWATTAQKLAIWFPGRMILDLM
>CP032869.1|AYL99638.1|6788274_6788577_-|septum-formation-initiator-family-protein
MKRLIDLFKNKFFLVTLAFVVWMIFFDRNDLFSQYQYHQQVKKLRVERDFYKAQTDQVNKELNELTTNPQQLEKFAREKYLMKKANEDVYVVVPDSTEKK
>CP032869.1|AYL98975.1|6788780_6790148_-|DEAD/DEAH-box-helicase
MSFENLNLIEPILKALKTEGYTTPTPIQAQAIPIILQRRDLLGCAQTGTGKTAAFAIPTLQLLHQDRIAHKEQKTIKALVLTPTRELALQIGESFTNYGKHTGLKNLVIFGGVSQNPQVDALRRGVDILVATPGRLLDLMNQRYVHLDHVKFLILDEADRMLDMGFVNDVKKIIAKVPAKRQTLFFSATMPKEIQGLADSILNNPEKVEVTPVSSTAETIQQAIYYVDKGDKKNLLIHILKDKTIKTVLVFTRTKHGADKVVKDLNRVGITAEAIHGNKSQNARQRALTNFKNRTTRVLIATDIAARGIDIDELTHVINYELPNVPETYVHRIGRTGRAGANGIAFSFCDAEELEFLKDIHKLIAKQIPVEEGHPYPLSPAAMAAKINEAPKKGGSGGGQRGGGRGGNNRKSGGGGGNSRSAGNGRSGGNKKSGGSRSEAGRPGGASGMSGSRRG
>CP032869.1|AYL99639.1|6790410_6790953_-|signal-peptidase-II
MMNKKGILRILAIVLIFIASVGLDRVTKLYIRDHVHISDNIFVIKNFFTILHAENTGAFLSLGDSLQNPWRFILLSLLPLIALAFGIGYVMLKPSIGKLTTIGIVLVIAGGAGNLYDRMMYGSVTDFMHMNFHIFQTGVFNVADVSIMIGMGLILLESWKKDKAAKKKQQEEADAETTPA
>CP032869.1|AYL98976.1|6791218_6792514_-|phosphopyruvate-hydratase
MSIIIDVHARQILDSRGNPTIEVEVLTENGAFGRAAVPSGASTGVHEAVELRDNDKSKYMGKGVLKAVENVNEILAPELKGIDVFEQNAIDALMIEIDGTENKGKIGANAILGVSLAVAKAAAQESRQPLYRYIGGVNANTLPIPMMNIVNGGSHSDAPIAFQEFMIMPVGAPSFSEALRWGTEVFHNLKKILHDRGLSTAVGDEGGFAPTFEGTEDGVETILKAIEKAGYKAGEDIFIAFDCAASEFYKDGKYDYTKFEGEKGAIRTSAEQADYLAELVAKYPVISIEDGMAEDDWEGWKILTDKIGKKVQLVGDDLFVTNTKRLQRGVSEGIANSILVKVNQIGSLTETINAVTLAQTNGFTSVMSHRSGETEDSTIADLAVALNCGQIKTGSASRSDRIAKYNQLLRIEEELGANAKFIGKDFKYFKK

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Crispr_ID: CP032869_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032869_14

7095794-7095890

Orphan

Consensus_repeat	Method
TAAAGTACTTTGTATTTCAAAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032869_14

>merge|CP032869|14|7095794-7095890|CRISPRCasFinder
TAAAGTACTTTGTATTTCAAAGTTGTTATTCAAAAAGAAAGGCTTATTCATGTTAAGCCCCGACAAATATAAAATAAAGTACTTTGTATTTCAAAGT

>CP032869|14|13|7095794-7095890|CRISPRCasFinder
TAAAGTACTTTGTATTTCAAAGT	TGTTATTCAAAAAGAAAGGCTTATTCATGTTAAGCCCCGACAAATATAAAA
TAAAGTACTTTGTATTTCAAAGT

Protein	Signature genes	Signature genes Name	Protein_function
CP032869.1\|AYL99218.1\|7106888_7109891_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
CP032869.1\|AYL99213.1\|7097965_7098376_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|379205
CP032869.1\|AYL99203.1\|7088798_7089857_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223674
CP032869.1\|AYL99215.1\|7098685_7099876_-\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893
CP032869.1\|AYL99210.1\|7095936_7096518_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP032869.1\|AYL99653.1\|7086100_7086874_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|273657
CP032869.1\|AYL99206.1\|7091121_7091634_-\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235365
CP032869.1\|AYL99655.1\|7103732_7106627_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|369392
CP032869.1\|AYL99214.1\|7098372_7098645_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL99209.1\|7094442_7095780_-\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|377608
CP032869.1\|AYL99654.1\|7087132_7087624_+\|DUF1599-domain-containing-protein	unknown	unknown	gnl\|CDD\|377892
CP032869.1\|AYL99205.1\|7090370_7091120_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL99202.1\|7087630_7088794_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
CP032869.1\|AYL99217.1\|7102653_7103610_+\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|234663
CP032869.1\|AYL99211.1\|7096521_7096935_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225057
CP032869.1\|AYL99204.1\|7089867_7090374_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|140006
CP032869.1\|AYL99216.1\|7100007_7102488_+\|carboxypeptidase-like-regulatory-domain-containing-protein	unknown	unknown	gnl\|CDD\|372685
CP032869.1\|AYL99212.1\|7096931_7097969_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
CP032869.1\|AYL99207.1\|7091760_7092156_-\|hypothetical-protein	unknown	unknown	unknown
CP032869.1\|AYL99208.1\|7092308_7093715_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174

Protein	Function_ID	Function_description	E-value
CP032869.1\|AYL99218.1\|7106888_7109891_+\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
CP032869.1\|AYL99213.1\|7097965_7098376_-\|PIN-domain-containing-protein	gnl\|CDD\|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	2.88073e-10
CP032869.1\|AYL99203.1\|7088798_7089857_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.03531e-102
CP032869.1\|AYL99215.1\|7098685_7099876_-\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
CP032869.1\|AYL99210.1\|7095936_7096518_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	3.12493e-13
CP032869.1\|AYL99653.1\|7086100_7086874_-\|dihydropteroate-synthase	gnl\|CDD\|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.72162e-106
CP032869.1\|AYL99206.1\|7091121_7091634_-\|phosphoribosyltransferase	gnl\|CDD\|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	6.06674e-26
CP032869.1\|AYL99655.1\|7103732_7106627_+\|transcriptional-regulator	gnl\|CDD\|369392	pfam07495, Y_Y_Y, Y_Y_Y domain. This domain is mostly found at the end of the beta propellers (pfam07494) in a family of two component regulators. However they are also found tandemly repeated in CTC_02402 without other signal conduction domains being present. It's named after the conserved tyrosines found in the alignment. The exact function is not known.	1.83643e-07
CP032869.1\|AYL99209.1\|7094442_7095780_-\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|377608	pfam06123, CreD, Inner membrane protein CreD. This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with an Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA.	0
CP032869.1\|AYL99654.1\|7087132_7087624_+\|DUF1599-domain-containing-protein	gnl\|CDD\|377892	pfam07659, DUF1599, Domain of Unknown Function (DUF1599).	2.00793e-33
CP032869.1\|AYL99202.1\|7087630_7088794_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	0.00129572
CP032869.1\|AYL99217.1\|7102653_7103610_+\|rhodanese-related-sulfurtransferase	gnl\|CDD\|234663	PRK00142, PRK00142, rhodanese-related sulfurtransferase.	3.39292e-155
CP032869.1\|AYL99211.1\|7096521_7096935_-\|hypothetical-protein	gnl\|CDD\|225057	COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only].	9.28591e-08
CP032869.1\|AYL99204.1\|7089867_7090374_+\|shikimate-kinase	gnl\|CDD\|140006	PRK13949, PRK13949, shikimate kinase; Provisional.	1.71023e-55
CP032869.1\|AYL99216.1\|7100007_7102488_+\|carboxypeptidase-like-regulatory-domain-containing-protein	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	1.82373e-15
CP032869.1\|AYL99212.1\|7096931_7097969_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
CP032869.1\|AYL99208.1\|7092308_7093715_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	5.37594e-121

>CP032869.1|AYL99209.1|7094442_7095780_-|cell-envelope-integrity-protein-CreD
MITEETPKHSFLIWLKESATFKLIFIGILVLLLLIPSSLIHELITERSQRQEEVIREVSDSWSAKQVIKGPVLVIPYKKQFKLTDTTTRTTSGNIYVLPESLNIKAGLTTQILHRGIFDVAVYNTHIKVNGGFGHLNFENLGITPDQLLLNQARLEFGVGDLKGLKSDPVIKTTAGEKLSVNPDFDSELLFTNGLQAKLNLSTGLPDQLPFAYDLDLKGSEDLYFLQLGKSTTVEAEGNWANPSFEGSNLPDERKVDSSGFKAGWHLLNYNRQLPQQWIGDGSKHSNKLESNSFGVKLRLPVDQYQKTMRTSKYAVLIILLTFISLFLTEVIRKQAIHVFNYILIGTAMVIYYTLLLSFSEQVGYNAAYLIASISTIALISVFISSLLKNGKAALLFAFILTVFYTFIFVIIQLEDLALMVGSIALFMIIAILMYFSRKINWDKQ
>CP032869.1|AYL99208.1|7092308_7093715_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MSKANKPKFFENVQIIDIAEEGKGVGKADDFVLFVDKAVPGDIADIQVYRSKKNFGEGKITELKTPSEYRTQAFCEHFGTCGGCKWQHMTYEAQLKFKQKSVSDALSRLAKINVDGMMPIVPSPADRYYRNKLEFTFSNKRWLYDGENKEDGELNMNALGFHIPGRFDKILDVNHCYLQAEPSNSLRNEIRDFTLQNGYTYYDLRNHEGMLRNLVVRTSSTGENMVIVVFAYAEQSEIDKLMSHIDAKFPQITSLLYIVNHKKNDTIFDQDVVAFKGPEYIHEEMNGIKFRIGPKSFYQTNSVQALRLYEITRDFADFKGDELVYDLYTGAGTIANFVAGHVREVVGVEYVPTAIEDAKVNSAINNITNTKFYAGDMKDVLVADFVAEHGKPDVIITDPPRAGMHPDVVARLMEIEAPKIVYVSCNAATQARDLLVLREKYDTVKIQPVDMFPHTQHVENVVLLVLRD
>CP032869.1|AYL99207.1|7091760_7092156_-|hypothetical-protein
MNPEELLNESNERNKPAADSPLISLERDLKYFSESIKEVAEEIMNEGLSSYPIFVAHQHELSLGELILDKNDLNSEWSIHASTLEEFVERDVIKPVLKERFVKSFKDPYQYMCVFVVVPEGANFVYFPYVK
>CP032869.1|AYL99206.1|7091121_7091634_-|phosphoribosyltransferase
MSDKKLLILNKQQIQQKLDRMAYQILEDNFDEDEILIAGILPRGNHIAERLKAILDNIAPFKSRLLTIELEKQSSSLSANIDFEVEECSNKVVILVDDVLNSGKTLAYGFGVFLDVPLKKLRTAVLIDRNHKSFPVTTDFAGMALSTVIKEHVDVLLEEEDEQEDGVYLR
>CP032869.1|AYL99205.1|7090370_7091120_-|hypothetical-protein
MKRLSIYLFAIALLTSCDHSKDEEKIIAAFQPAFSNLKNIGTRFTGSGDTFCSTGIYLNDDSTFTFEGGCEGRSFVSIGKWQLLGDSVKLIPHPKNKVNLSYNIKLSKWNENPFAIFIIVDKTNKPIENFAIQPFNSKRLYNYTEQGLRLNTQVSKDFDGPEIYKTDTAGTIKLYKQKTDSLNFPKLGLLSNKPISISTNYLPDTIQIMINVNRTIFFYDEVRYIKNAEKFADHKIALTQFKRLKNKQH
>CP032869.1|AYL99204.1|7089867_7090374_+|shikimate-kinase
MKYFIVGFMGCGKTTWSRKLAAKWGYEFIDLDHVLEAKAGMSIAEYFSSFGEDAFRQLESQVLKETEYAENTVVSTGGGLPCFFDNMDWMNANGKTLYIKLSPKTLAGRLENSKTVRPVLQGKKGDELVEFITGKLAERESFYLKASNIVEGIDMSVEKLEEALGVSG
>CP032869.1|AYL99203.1|7088798_7089857_+|ABC-transporter-permease-subunit
MIPYLLRKLLYGLAVMLGVVVVVFFLFNILPVDPARMTQGQRADVQSLQAVRKEFGLDKPVPVQFAYYVNDLSPIGIHLNTAEEQQRYGYVKLFPVSEHKVLALKWPYLRRSYQTRKDVASLLLEVIPNTLILAAAAMIFAIIIGVFLGVVSAVNKDTWIDKLALSFSTLGISAPSFFAGIIIAWIFGFVLSNYTHLNMSGSLYSYDPFKGEVITLKNLVLPVITLGLRPLAIIVQLTRNAMLDVLGQDYIRTAKAKGLSNRAIIYRHALKNAMNPVITAIANWFASLLAGSFFVEYIFGYNGLGKATVDALEMSDFPVVMGSILFIAFIFVVISILVDIVYVWIDPRVKLS
>CP032869.1|AYL99202.1|7087630_7088794_+|DoxX-family-protein
MKNTSSNSAVIWIPRLLVGLLFIFSGLIKANDPLGFSYKLVEYFEVFHITFLNGLALTMAIVLCALEMILGFALLIGVRAVKITWGLLLLIIFFGFLTFYSAFFKVVQTCGCFGDAIPLTPWQSFSKDMVLLALVLVLFVKRKEIKPLFAAKVGDKWLIFATVVSIGFGVYTYNFSPIVDFLPYKIGANLPEEMSTPPGAPRDEFELTYHLKNKKTGETKVMNDKDYLKTNIWKDANWEVVGDPENRLVKKGYEPKIRDLAIQDAQRNDYTKELLSSPFYSLFIVAYDLSETDKDAINRLNALAINLTQNYNIRTILLTSNSAADAQAFAKEHKLISEIFYADGVPLKSMVRSNPGVLLIKNGTVVNKWHYHSVPKYDDIVKQYLQK
>CP032869.1|AYL99654.1|7087132_7087624_+|DUF1599-domain-containing-protein
MKKTRDYGTAWRILRPQSITDQIFIKAQRIRTLEEKKVSKVGDDITGEYIGIVNYCVIAMMQLECGPEVSNELAPDHVEQLFDEKVNETKELMFAKNHDYGEAWRDMRISSLTDLILMKLLRVKQIEDNKGLTEASEGVKANYQDMLNYAVFALIKLNVHQGK
>CP032869.1|AYL99653.1|7086100_7086874_-|dihydropteroate-synthase
MGIINTTPDSFFADSRKQGVDEALQQAEKMLADGAAFLDLGAYSSRPGAVDISAQEETDRLLPVVEAIAKAFPEAIMSIDTFRAGVAEAAIKSGAHIINDIGGGTLDDEMFATVARLQVPYILMHMKGTPQTMTQLAQYDDVFNEVFNDLAAKYQQLKRLGVHDVIIDPGFGFAKTAEQSYALLNKVDEFKMLDLPVLTGVSRKRMIYGVLGSTAAEALNGTTVLNTIALTKGTDILRVHDVKEAVEAVKIWEAVNR
>CP032869.1|AYL99210.1|7095936_7096518_-|TetR-family-transcriptional-regulator
MEADKIKDSIKRAAQELFRKFGYHKTSVNEIAKKAKIAKATIYKYFDSKEAVLHVLLMDYIKASVDDLVESNTPDIDEEAYLNGLIMKTCRLSYTICNEFIGWDFIRESANSQDFLKNLSNELEELLMASFIQLPGIRKHETYQQRLRFLIKCSKSIVFSFAFTSVSDSDVRKNFVSFQKEILPYLVKAAISV
>CP032869.1|AYL99211.1|7096521_7096935_-|hypothetical-protein
MRQLTLILLVAISCFSCGKATDNVPSIPVNYQAALGTPALSPLNVAGGTVVINGYGVAGLIIYRKINGTYAAYDRCSSYQPEKKCACTPDGTGFTVTDPCSGSKFSLEDGTPVKAPATKALRSYRVSVTQFEIQVTN
>CP032869.1|AYL99212.1|7096931_7097969_-|phenylalanine--tRNA-ligase-subunit-alpha
MMQAQIDQYTAEINAFSPANADELEAFRIKFLGTKGIIKDLFEQFKTVGPEEKRTFGKVLNEFKQLADAKYNELKENIATSTQSKGNDLDLTLPGDGFAVGSRHPLSLVRNEIIDIFKRLGFVVAEGPEIEDDWHNFSALNFPDEHPARDMQDTFFIKKNNGKDDIALRTHTSSVQVRMMEHGKPPFRAIMPGRVYRNEAISARAHCFFHQVEGLYVDENVSFSDLKQTLYHFVQELYGEGTKVRFRPSYFPFTEPSAEMDISCTICGGPGCNMCKYTGWVEILGCGMVDPNVLENCGIDSKKYTGFAFGMGMERIANLKYVIRDLRLFSENDVRFLKQFQTEML
>CP032869.1|AYL99213.1|7097965_7098376_-|PIN-domain-containing-protein
MKLAFIDSDVLLDVILNRPAFYSASAQILSLPVSGGYNFCTAVHTLINVHYFTKKHLGSEAAIGAIKLLSKQLQVLGEDAKTIDDAIASDFKDFEDAVQYFAAKNAGVDLIITRNIKDYKNSTIPVLTAEQFLNTL
>CP032869.1|AYL99214.1|7098372_7098645_-|hypothetical-protein
MAKLILDIEPDVLKQAELYADETHTNLSKLIERYLKKVTTSTAVVEEPKANTKTIEIADWVKKLTLSKTPTPDFDCKAEYHKHLDEKYGL
>CP032869.1|AYL99215.1|7098685_7099876_-|glycine-C-acetyltransferase
MYNTLKPVLQQELTDIENAGLYKKERIITSPQGADITVQSGAEVINFCANNYLGLSGNTKVIQAAKDAMDTHGYGLSSVRFICGTQDIHKELEKRIAEFLGTEDTILYAAAFDANGGVFEPLFNDQDAIISDELNHASIIDGVRLCKAQRHRYKHDDMADLEEKLKATQDLRHRIIVTDGAFSMDGTIAQLDKICDLADKYNALVMIDESHCSGFMGKSGRGTHEHHNVMGRIDIITGTLGKALGGASGGFTSGRKEIIDMLRQRSRPYLFSNTLAPAITGASIAVLDMLSETTELRDKLESNTQYFRQKMTEAGFDIKPGVHPIVPVMLYDAKLAQEFAAKMLDEGIYVIGFYYPVVPQGKARIRVQISAAHDQHHLDKAIAAFTKVGKGLGVLK
>CP032869.1|AYL99216.1|7100007_7102488_+|carboxypeptidase-like-regulatory-domain-containing-protein
MRRYILLLIAVLCAITASAQQALLSGKITDKNGAVIPFVSIYIRNSTYGTTANENGIYQFKLAPGTYKIIYRSVGYTEKIEEVTIAGQDQQHNVQMADEQFNTDRVSESYRKNRDAADTIIKQVIKKRRYYMEEATSFSCAVYIKGVQRLLSVPKSMIGQEVQKTLDLDSNGRGILYQSESLSEYNFQKPNKIREITIANRMAGQNTAFGYKKASDLQANFYENVFTIPGLASRGFVSPIASYGPQFYNYKLLGTSVENGHTIDKIHITPKHAHGQYFQGDIYIVEGDWRVYSVDFFVDNKVSNLNLVDTLSIRQQYIAITDSVWMPASTQYNFKGAVLGFKFGGYYAAVYNNYKINPTFPDGFFTGEILKVDTVANTKKPNYWAETRPIPLTAFEERDYKKKDAIAEYQKTDKYLDSLQHHKNHINYPGYLIFGYAASNKSKRDSLYIFPFIQTFYYNTVEGFGINAKASYIRTIDDFHSLTITPAVRYGFSNKIFSANVAGEYLNDPFHAAKFYADFGSDVLDLNNVGTRSLYFNTLSTLLSENNYVKYYRSHYGDFGYQREVANGVLLKGGLSYSSRSQLYNTSFSKFKDIKGREFTSNNPLAPPGTPPDDHSFLFPDNQALVFNASALFTFDQRYETRPTGKFNLKSKYPMLKVNYRKGFKNILGSDVDYDFASVDISQDQIQVGLSGYSSFKISGGGFINNNKLYYMDYNHFLGNQGTTFDPTYVGSFHFLPFYTYSTNGAFLEAHYQHNFAGSLFNHIPLLRKAKLEEIIGANYLTTKNNRNYREFYIGVQRLIFRVDYGISYAGDKKYLQGFRIFYGIR
>CP032869.1|AYL99217.1|7102653_7103610_+|rhodanese-related-sulfurtransferase
MEMYNTLLYYCYSTIANAEQFAADHLKFCKSLGLTGRIIVADEGLNGTVSGSVEACKTYMETIQADERFAKTEFKIDEVDTPSFVKMHVRYKSEIVHSGLRDPNVINPSQRTGIHLEPQEFLAMKDRDDVVVLDVRSNYEHSLGKFKNAVTLDIDNFRAFPDMINQLAQYKDKKILTYCTGGIKCEKASALLLHEGFPEVYQLHGGIIKYGKEAGGEDFEGKCYVFDNRLSVDVNSVNPVVISTCLNCGKTTPKMINCANPECNEHFTQCDECGAAMDGCCSDACKEHPRKRVYDGTGYYVKVPQPVNINKNKLQPVE
>CP032869.1|AYL99655.1|7103732_7106627_+|transcriptional-regulator
MRKFLFIFICFLYLPFLRAFAVDIKSVGVPYVQNYTKAVYQWGNQNWSVTRDEHGIMYFGNAEGLLAFDGKYWQQHHMPNGLIVRSVCADGKGKIYAGGYGEFGFWQSSDRGYLKYTSLINLVPRQFLPINEEIWKIYCYNNRVIFQSFGSIYIYSAGKITVVKSPQPYLFLFKCGTRFFVEQVSKGLFELKDTKLEYIAGSDVLGTSGVLSVLPFGQDNYLIGTAKSGLFIYNGQTIKPWANQANQFLKTYQLNNGALISGRYFAYGTILNGIVIVDTAGKVVQHINKASGMQNNTVLSLYTDTEQNLWAGLDNGIDRIELNSPMYFYFDKTGRFGTVYSSIIFDNKIYLGTNQGLFYSDWLPGNSKGLFQSFDFKLIPGSQGQVWDLSLQDGRLLCGHNDGTYQVNGGSITKISDITGGWTMKKIAPDMLMQGTYTGLVIYKKDAAGNWQYSHKLADFGEPSRYVEQDSKGQIWVSHAYKGIYKLLLSADQKKAVSRVYYDKHYGLPGSYNINVFDLDNRIVFSSDSGFYVYDDISDRFFKYDQLNKKLGTFATSSKIIKAIGKKYWFINHGRIGLADMSVPGKLTIDTNRFSVLNGQMVQHYETINRISNSTYLISVDDGFVILNDGDALTGNNIHIPPVLIRRVENITDKIAVISEGSPGNQTIEIPYADNNIRIAYALPYYKQARIKFQYYLDGYSRQWSEWTPQSQKEFTNLDQGIYQFKVRARINDQQVSAETVFTFTILPPWYAGKIAMIFYALLLVLSYYVIRHYYRIKLKRHQQHIQQKLQKEKEEFLKQEAIANQQHIINIKNEQLQADLASKSRELANSAMNIVYKNELLQKISDELTHLKGGDGKKLADDQLRRIQKVIDEGMSDERDWNIFETSFNEAHENFFKKLKAGHPDLVPNDLKLCAYLRMNMSSKEMASLLNISLRGVEIRRYRLRKKLNLEHDKNLTEFLIEL
>CP032869.1|AYL99218.1|7106888_7109891_+|SusC/RagA-family-TonB-linked-outer-membrane-protein
MKRIFTVSVLVLFCSLFINAVFAQDVVVKGKVTDATTGEALIGVSVSLKGTTTGVQTDVNGAFSLKAPGNGTLVFTYIGYVASSLPINNQTVFDVKLKPEAKELAQVVVIGYGTQKKRDVTGAVASISGDVVTKQPVQTPTQALQGKVSGVQVLSSGQPNAQPVVRIRGTGSVLAGANPLYVVDGVLTDDIRNINNSDIVSVDVLKDASAAIYGVRAANGVIIITTKKGKAGAPVVSYDANVGFREAASTVKLANRQQYVDYLSVASPTKIANDDKAPLTIPGTTDWAAAVSRKAFETNHNLSVSGGNEKALYFISANYIDEDGIIKTNNFQRFTIRANNQVNVSDKLKFTNQISLSRNTERPVDIGGIYGNVYRAAPIIPAIVDGKYGNTSAWSNVGNPLLQLDKTNDFTLNNRIQGNVALDYNPIKSLTFHSAFNLDARFNNQKNYDYQFASDASTFTVGGGNQRRDNSSLFVQNDNSYQYQWDNTITYDKTFDNKHHLTLLGGIVSEKGRSNFLNGTRIDVPANPDQWFLDVGNPDVNAVDHNGGDLFTRLSYVGRVNYAYNSKYLLSASIRRDGSSRFSQKWGTFYTVGGGWVVSEEDFMKDGIFSNLKLRASYGELGNDNIGSSLFVITGTPYLPYYFGNTLVAGTVIQDIKDTNLKWETTKQLDIGFDCGFLNNRLTGEVDYYNKKVNNALTNIGLPGILGDPDNIYTTNAASYSNKGLEVSARWTDRINSHISYNIGANIAYNKNQVNKLNGGTFISAGGANGQTITRTDNGQPIGSYYVLKAIGVFQNQAEVDAAPPYTFTSEANHVGGLRYADVNNDGKIDANDRIFAGSYQPKYFGGFNFGITYNEFDFSADFYGNWGNKIYNAKKNSRSTENDNIEASYANSRFTTANPSTTDPATITSGTPPSTYFIESGAFLRLNNVTLGYTVPSAIVKRLGMQKIRMYLTSQNLFTAKRYSGQSPELFSTDILTQGIDATNYPVTRTFAFGVNVQF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NZ_KY940428	UNVERIFIED: Bacillus sp. (in: Bacteria) strain PUMK-07 plasmid pMK-07, complete sequence	121687-121705	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NZ_CP036355	Bacillus sp. SYJ plasmid unnamed1, complete sequence	110845-110863	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NZ_CP053290	Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence	261796-261814	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	26673-26691	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NC_011655	Bacillus cereus AH187 plasmid pAH187_270, complete sequence	97310-97328	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NC_010924	Bacillus cereus strain AH187 plasmid pCER270, complete sequence	153719-153737	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NC_011777	Bacillus cereus AH820 plasmid pAH820_272, complete sequence	108632-108650	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	CP045776	Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence	143034-143052	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	11070-11088	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NC_016792	Bacillus cereus NC7401 plasmid pNCcld, complete sequence	152588-152606	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NZ_CP009299	Bacillus cereus D17 plasmid unnamed, complete sequence	15350-15368	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NZ_CP047086	Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence	74197-74215	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NC_005707	Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence	25247-25265	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NZ_CP053930	Bacillus cereus strain FDAARGOS_797 plasmid unnamed1, complete sequence	162061-162079	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NZ_CP022346	Bacillus thuringiensis strain c25 plasmid unnamed1, complete sequence	288600-288618	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NC_018492	Bacillus cereus FRI-35 plasmid p01, complete sequence	94958-94976	0	1.0
CP032869_2	2.3\|1029119\|19\|CP032869\|CRISPRCasFinder	1029119-1029137	19	NZ_CP033789	Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence	94154-94172	0	1.0
CP032869_4	4.10\|1325522\|24\|CP032869\|CRT	1325522-1325545	24	KJ019064	Synechococcus phage ACG-2014c isolate Syn7803C98, complete genome	62838-62861	2	0.917
CP032869_4	4.10\|1325522\|24\|CP032869\|CRT	1325522-1325545	24	KF156339	Synechococcus phage S-MbCM25, complete genome	62741-62764	2	0.917
CP032869_4	4.10\|1325522\|24\|CP032869\|CRT	1325522-1325545	24	KJ019063	Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome	62357-62380	2	0.917
CP032869_4	4.10\|1325522\|24\|CP032869\|CRT	1325522-1325545	24	KJ019027	Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome	62735-62758	2	0.917
CP032869_4	4.10\|1325522\|24\|CP032869\|CRT	1325522-1325545	24	NC_019444	Synechococcus phage S-MbCM6, complete genome	62744-62767	2	0.917
CP032869_4	4.10\|1325522\|24\|CP032869\|CRT	1325522-1325545	24	KJ019128	Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome	62838-62861	2	0.917
CP032869_4	4.3\|1325204\|24\|CP032869\|CRT	1325204-1325227	24	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1081854-1081877	3	0.875
CP032869_4	4.10\|1325522\|24\|CP032869\|CRT	1325522-1325545	24	AP013640	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C28B-MedDCM-OCT-S32-C177, * SEQUENCING IN PROGRESS *	7069-7092	3	0.875
CP032869_4	4.10\|1325522\|24\|CP032869\|CRT	1325522-1325545	24	AP013639	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C28B-MedDCM-OCT-S28-C164, * SEQUENCING IN PROGRESS *	242-265	3	0.875
CP032869_4	4.12\|1325612\|24\|CP032869\|CRT	1325612-1325635	24	MN693993	Marine virus AFVG_250M418, complete genome	27600-27623	3	0.875
CP032869_4	4.12\|1325612\|24\|CP032869\|CRT	1325612-1325635	24	MN693143	Marine virus AFVG_25M149, complete genome	18294-18317	3	0.875
CP032869_4	4.18\|1325882\|24\|CP032869\|CRT	1325882-1325905	24	NZ_CP040761	Paracoccus sp. 2251 plasmid unnamed5, complete sequence	162250-162273	3	0.875
CP032869_4	4.10\|1325522\|24\|CP032869\|CRT	1325522-1325545	24	NZ_CP027853	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence	258965-258988	5	0.792
CP032869_7	7.1\|3460552\|27\|CP032869\|CRISPRCasFinder	3460552-3460578	27	JN638751	Bacillus phage G, complete genome	39494-39520	5	0.815
CP032869_9	9.1\|4292728\|30\|CP032869\|CRISPRCasFinder	4292728-4292757	30	MN693224	Marine virus AFVG_25M317, complete genome	37951-37980	6	0.8
CP032869_11	11.1\|4367955\|32\|CP032869\|CRISPRCasFinder	4367955-4367986	32	NZ_CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	177778-177809	8	0.75

1. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NZ_KY940428 (UNVERIFIED: Bacillus sp. (in: Bacteria) strain PUMK-07 plasmid pMK-07, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

2. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NZ_CP036355 (Bacillus sp. SYJ plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

3. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NZ_CP053290 (Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

4. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

5. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NC_011655 (Bacillus cereus AH187 plasmid pAH187_270, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

6. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NC_010924 (Bacillus cereus strain AH187 plasmid pCER270, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

7. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NC_011777 (Bacillus cereus AH820 plasmid pAH820_272, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

8. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to CP045776 (Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

9. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

10. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NC_016792 (Bacillus cereus NC7401 plasmid pNCcld, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

11. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NZ_CP009299 (Bacillus cereus D17 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

12. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NZ_CP047086 (Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

13. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NC_005707 (Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

14. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NZ_CP053930 (Bacillus cereus strain FDAARGOS_797 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

15. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NZ_CP022346 (Bacillus thuringiensis strain c25 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

16. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NC_018492 (Bacillus cereus FRI-35 plasmid p01, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

17. spacer 2.3|1029119|19|CP032869|CRISPRCasFinder matches to NZ_CP033789 (Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgaggaagataaaaaa	CRISPR spacer
aggcgaggaagataaaaaa	Protospacer
*******************

18. spacer 4.10|1325522|24|CP032869|CRT matches to KJ019064 (Synechococcus phage ACG-2014c isolate Syn7803C98, complete genome) position: , mismatch: 2, identity: 0.917

cttcagttgcagcaaaatcagcag	CRISPR spacer
cttcatttgcagcaaaatcatcag	Protospacer
***** ************** ***

19. spacer 4.10|1325522|24|CP032869|CRT matches to KF156339 (Synechococcus phage S-MbCM25, complete genome) position: , mismatch: 2, identity: 0.917

cttcagttgcagcaaaatcagcag	CRISPR spacer
cttcatttgcagcaaaatcatcag	Protospacer
***** ************** ***

20. spacer 4.10|1325522|24|CP032869|CRT matches to KJ019063 (Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome) position: , mismatch: 2, identity: 0.917

cttcagttgcagcaaaatcagcag	CRISPR spacer
cttcatttgcagcaaaatcatcag	Protospacer
***** ************** ***

21. spacer 4.10|1325522|24|CP032869|CRT matches to KJ019027 (Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome) position: , mismatch: 2, identity: 0.917

cttcagttgcagcaaaatcagcag	CRISPR spacer
cttcatttgcagcaaaatcatcag	Protospacer
***** ************** ***

22. spacer 4.10|1325522|24|CP032869|CRT matches to NC_019444 (Synechococcus phage S-MbCM6, complete genome) position: , mismatch: 2, identity: 0.917

cttcagttgcagcaaaatcagcag	CRISPR spacer
cttcatttgcagcaaaatcatcag	Protospacer
***** ************** ***

23. spacer 4.10|1325522|24|CP032869|CRT matches to KJ019128 (Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome) position: , mismatch: 2, identity: 0.917

cttcagttgcagcaaaatcagcag	CRISPR spacer
cttcatttgcagcaaaatcatcag	Protospacer
***** ************** ***

24. spacer 4.3|1325204|24|CP032869|CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

gaccgcttacagcgtaatcagcag	CRISPR spacer
taccgcgtacagcggaatcagcag	Protospacer
 ***** ******* *********

25. spacer 4.10|1325522|24|CP032869|CRT matches to AP013640 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C28B-MedDCM-OCT-S32-C177, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.875

cttcagttgcagcaaaatcagcag	CRISPR spacer
cttcagctgcagcaacatcagcat	Protospacer
******.******** *******

26. spacer 4.10|1325522|24|CP032869|CRT matches to AP013639 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C28B-MedDCM-OCT-S28-C164, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.875

cttcagttgcagcaaaatcagcag	CRISPR spacer
cttcagctgcagcaacatcagcat	Protospacer
******.******** *******

27. spacer 4.12|1325612|24|CP032869|CRT matches to MN693993 (Marine virus AFVG_250M418, complete genome) position: , mismatch: 3, identity: 0.875

cttcagttgcagcataatcagcag	CRISPR spacer
attcagttgctgcataattagcag	Protospacer
 ********* *******.*****

28. spacer 4.12|1325612|24|CP032869|CRT matches to MN693143 (Marine virus AFVG_25M149, complete genome) position: , mismatch: 3, identity: 0.875

cttcagttgcagcataatcagcag	CRISPR spacer
gtccagttgcagcatcatcagcag	Protospacer
 *.************ ********

29. spacer 4.18|1325882|24|CP032869|CRT matches to NZ_CP040761 (Paracoccus sp. 2251 plasmid unnamed5, complete sequence) position: , mismatch: 3, identity: 0.875

cttcagttacagcgtaatcggcag	CRISPR spacer
cgacagttacagcgtgatcggcag	Protospacer
*  ************.********

30. spacer 4.10|1325522|24|CP032869|CRT matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 5, identity: 0.792

cttcagttgcagcaaaatcagcag	CRISPR spacer
aaatcgttgcagcaaaatcagcag	Protospacer
   . *******************

31. spacer 7.1|3460552|27|CP032869|CRISPRCasFinder matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 5, identity: 0.815

cgctaaagataaatcatcgttccaaac	CRISPR spacer
atctaaagataaatcatcattccatag	Protospacer
  ****************.***** *

32. spacer 9.1|4292728|30|CP032869|CRISPRCasFinder matches to MN693224 (Marine virus AFVG_25M317, complete genome) position: , mismatch: 6, identity: 0.8

taaggcttaaagcagatatttaataaaaac	CRISPR spacer
ttagcaataaagcagacaattaataaaaac	Protospacer
* **   *********.* ***********

33. spacer 11.1|4367955|32|CP032869|CRISPRCasFinder matches to NZ_CP024313 (Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence) position: , mismatch: 8, identity: 0.75

tattaagcgcgcaaagaggctaagacgcaagg	CRISPR spacer
gctgcagcgcgcaaagaggggaagacgcgaag	Protospacer
  *  **************  *******.*.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4463526 : 4470862

Acanthocystis_turfacea_Chlorella_virus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL97100.1\|4463526_4464390_-	glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	3.1e-93	59.6
AYL97101.1\|4464903_4465809_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
AYL97102.1\|4465831_4467121_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	5.5e-33	25.2
AYL97103.1\|4467232_4468087_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.0e-39	36.8
AYL97104.1\|4468117_4468672_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.0e-41	49.4
AYL97105.1\|4468792_4469737_-	NAD-dependent epimerase/dehydratase family protein	M1HKI0	Acanthocystis_turfacea_Chlorella_virus	8.7e-105	59.9
AYL99486.1\|4469743_4470862_-	GDP-mannose 4,6-dehydratase	M1IBD7	Acanthocystis_turfacea_Chlorella_virus	1.3e-123	61.9

DBSCAN-SWA_2

6836226 : 6861374

Acinetobacter_phage(25.0%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL99017.1\|6836226_6837135_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.0e-23	31.7
AYL99018.1\|6837131_6837464_-	hypothetical protein	NA	NA	NA	NA
AYL99019.1\|6837824_6839531_+	ribulokinase	NA	NA	NA	NA
AYL99020.1\|6839538_6840237_+	L-ribulose-5-phosphate 4-epimerase AraD	NA	NA	NA	NA
AYL99021.1\|6840418_6841753_+	glycoside hydrolase family 27 protein	NA	NA	NA	NA
AYL99022.1\|6841798_6843292_+	L-arabinose isomerase	NA	NA	NA	NA
AYL99023.1\|6843511_6845212_+	sodium transporter	A0A240F3J2	Aeromonas_phage	6.3e-61	36.5
AYL99024.1\|6845413_6846586_+	galactose-1-epimerase	NA	NA	NA	NA
AYL99025.1\|6846593_6848561_+	alpha-L-arabinofuranosidase	NA	NA	NA	NA
AYL99641.1\|6848657_6849566_+	arabinan endo-1,5-alpha-L-arabinosidase	NA	NA	NA	NA
AYL99026.1\|6849780_6850755_+	glycoside hydrolase	NA	NA	NA	NA
AYL99027.1\|6851036_6851906_+	hypothetical protein	NA	NA	NA	NA
AYL99028.1\|6852080_6853400_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	5.0e-66	36.3
AYL99029.1\|6853997_6854567_+	DUF4255 domain-containing protein	NA	NA	NA	NA
AYL99030.1\|6854563_6855403_+	hypothetical protein	NA	NA	NA	NA
AYL99031.1\|6855431_6857012_+\|tail	phage tail sheath family protein	NA	NA	NA	NA
AYL99032.1\|6857058_6857538_+\|tail	phage tail protein	T2KSM5	uncultured_phage	2.6e-20	43.3
AYL99033.1\|6857518_6858001_+\|tail	phage tail protein	NA	NA	NA	NA
AYL99034.1\|6858178_6858853_+	hypothetical protein	NA	NA	NA	NA
AYL99035.1\|6858854_6860645_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
AYL99036.1\|6860656_6860956_+	type VI secretion protein	NA	NA	NA	NA
AYL99037.1\|6860948_6861374_+\|tail	phage tail protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032869

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection