CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP032914	Alteromonas sp. RKMC-009 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
CP031010	Alteromonas sp. RKMC-009 chromosome, complete genome	0 crisprs	DinG,DEDDh,csa3,cas3	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

520758 : 532476

Klosneuvirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA62918.1\|520758_521736_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	9.8e-51	37.0
AYA62919.1\|521909_522443_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	2.0e-50	55.5
AYA62920.1\|523021_524047_+	sensor histidine kinase	NA	NA	NA	NA
AYA62921.1\|524216_525797_+	PAS domain S-box protein	A0A1B0V854	Salmonella_phage	1.5e-37	45.6
AYA62922.1\|525804_526098_-	hypothetical protein	NA	NA	NA	NA
AYA62923.1\|526198_526615_+	S24 family peptidase	A0A1L5C2A3	Pseudoalteromonas_phage	1.2e-18	48.2
AYA62924.1\|526602_527859_+	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	5.1e-84	41.5
AYA62925.1\|527943_528453_+	HAD family hydrolase	NA	NA	NA	NA
AYA62926.1\|528672_532476_+	response regulator	A0A1V0SGX0	Hokovirus	1.3e-21	26.3

DBSCAN-SWA_2

756933 : 764767

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA66443.1\|756933_757908_-	octaprenyl diphosphate synthase	A0A1V0SE37	Indivirus	1.1e-06	23.7
AYA63113.1\|758219_758531_+	50S ribosomal protein L21	NA	NA	NA	NA
AYA63114.1\|758546_758804_+	50S ribosomal protein L27	NA	NA	NA	NA
AYA63115.1\|758986_760150_+	Obg family GTPase CgtA	NA	NA	NA	NA
AYA66444.1\|760184_760676_+	type 3 dihydrofolate reductase	A0A1B2IAU3	Erwinia_phage	7.9e-25	43.5
AYA66445.1\|760773_761715_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.6e-36	33.8
AYA66446.1\|761843_762704_-	LysM peptidoglycan-binding domain-containing protein	I3PV79	Clostridium_phage	8.4e-14	35.3
AYA63116.1\|762722_763301_-	DedA family protein	NA	NA	NA	NA
AYA63117.1\|763297_763933_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.9e-37	50.0
AYA63118.1\|764017_764767_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.1e-73	54.3

DBSCAN-SWA_3

1350969 : 1361111

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA63568.1\|1350969_1352262_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	8.5e-135	59.8
AYA63569.1\|1352320_1353952_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.5e-147	50.0
AYA63570.1\|1354118_1356692_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	4.3e-29	23.8
AYA66486.1\|1356981_1357497_+	nicotinamide-nucleotide amidohydrolase family protein	B5TK85	Pseudomonas_phage	1.3e-25	45.3
AYA63571.1\|1357705_1358743_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.7e-117	62.5
AYA63572.1\|1359122_1361111_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.3e-29	45.9

DBSCAN-SWA_4

1688201 : 1698167

Burkholderia_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA63848.1\|1688201_1690970_+	hypothetical protein	E5E3N5	Burkholderia_phage	1.8e-211	43.1
AYA63849.1\|1691165_1691768_+	hypothetical protein	K7ZRM8	Xanthomonas_citri_phage	8.0e-11	52.2
AYA63850.1\|1691769_1692015_+	hypothetical protein	NA	NA	NA	NA
AYA63851.1\|1692120_1692537_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	1.5e-29	54.7
AYA63852.1\|1692588_1692771_+	hypothetical protein	NA	NA	NA	NA
AYA63853.1\|1692767_1693088_+	hypothetical protein	NA	NA	NA	NA
AYA63854.1\|1693080_1693275_+	hypothetical protein	NA	NA	NA	NA
AYA63855.1\|1693461_1694001_+	hypothetical protein	A0A0H4IQ87	Shigella_phage	1.4e-06	27.2
AYA63856.1\|1694011_1694518_+	hypothetical protein	NA	NA	NA	NA
AYA63857.1\|1694517_1694715_+	hypothetical protein	A0A2I7R054	Vibrio_phage	1.7e-10	53.4
AYA63858.1\|1694707_1694923_+	hypothetical protein	NA	NA	NA	NA
AYA63859.1\|1694922_1695228_+	hypothetical protein	A0A023NGW0	Nitrincola_phage	1.7e-25	53.7
AYA63860.1\|1695363_1695639_+	hypothetical protein	NA	NA	NA	NA
AYA63861.1\|1695656_1696031_+	hypothetical protein	NA	NA	NA	NA
AYA66514.1\|1696379_1696643_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYA63862.1\|1697171_1698167_+	recombinase XerD	A0A1P8DJ76	Virus_Rctr85	1.9e-09	30.7

DBSCAN-SWA_5

2226737 : 2235706

Vibrio_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA64277.1\|2226737_2227655_-	hypothetical protein	J9SG05	Escherichia_phage	2.7e-111	64.8
AYA64278.1\|2227806_2228406_-	hypothetical protein	A0A0B5HAG6	Vibrio_phage	1.6e-48	54.2
AYA64279.1\|2228484_2230131_-	hypothetical protein	S4TTM6	Salmonella_phage	4.4e-144	48.2
AYA64280.1\|2230134_2230647_-	hypothetical protein	NA	NA	NA	NA
AYA64281.1\|2230624_2231917_-	hypothetical protein	A0A2P1JUU6	Xanthomonas_phage	6.0e-72	37.0
AYA64282.1\|2232135_2233260_-	hypothetical protein	M4SNG8	Pseudoalteromonas_phage	7.8e-52	33.5
AYA64283.1\|2233268_2234279_-	AAA family ATPase	A0A1J0GV36	Vibrio_phage	9.1e-84	45.1
AYA64284.1\|2234341_2234986_-	deoxynucleotide monophosphate kinase	R4VVQ5	Alteromonas_phage	5.9e-28	39.7
AYA64285.1\|2235015_2235375_-	hypothetical protein	NA	NA	NA	NA
AYA64286.1\|2235367_2235706_-	hypothetical protein	A0A1J0MGC4	Serratia_phage	1.3e-07	37.3

DBSCAN-SWA_6

2241138 : 2249276

Alteromonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA64300.1\|2241138_2241576_-	dUTP diphosphatase	A0A1J0GWD2	Alteromonas_phage	2.6e-35	57.0
AYA64301.1\|2241772_2241976_-	hypothetical protein	NA	NA	NA	NA
AYA64302.1\|2242121_2243315_-	hypothetical protein	S4TRN6	Salmonella_phage	3.3e-85	43.4
AYA64303.1\|2243374_2243578_-	hypothetical protein	R4VJS1	Alteromonas_phage	3.1e-07	41.9
AYA64304.1\|2243574_2243847_-	hypothetical protein	NA	NA	NA	NA
AYA64305.1\|2243843_2244755_-	hypothetical protein	C8ZKB9	Pseudomonas_phage	1.3e-52	37.0
AYA64306.1\|2245191_2245482_-	hypothetical protein	NA	NA	NA	NA
AYA64307.1\|2246454_2246742_-	hypothetical protein	NA	NA	NA	NA
AYA64308.1\|2246980_2247676_+	hypothetical protein	S4TT79	Salmonella_phage	5.0e-65	56.3
AYA64309.1\|2247668_2249276_+	hypothetical protein	M4SM47	Vibrio_phage	3.5e-231	72.1

DBSCAN-SWA_7

2261596 : 2292904

Vibrio_phage(26.67%)

tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA66550.1\|2261596_2263543_+\|tail	tail fiber domain-containing protein	D9ICW9	Escherichia_virus	5.0e-14	47.1
AYA64324.1\|2263535_2264717_+	hypothetical protein	NA	NA	NA	NA
AYA64325.1\|2264823_2265045_+	hypothetical protein	NA	NA	NA	NA
AYA64326.1\|2265146_2267279_+	chromosome partitioning protein ParB	A0A1J0GV12	Vibrio_phage	1.9e-195	58.7
AYA64327.1\|2267352_2267694_+	hypothetical protein	C8ZKI0	Pseudomonas_phage	1.3e-05	30.9
AYA64328.1\|2267699_2268839_+	hypothetical protein	S4TT67	Salmonella_phage	2.4e-64	50.2
AYA64329.1\|2268859_2270023_+\|capsid	N4-gp56 family major capsid protein	C8ZKH8	Pseudomonas_phage	1.0e-134	61.3
AYA64330.1\|2270086_2270602_+	hypothetical protein	U5PWM1	Acinetobacter_phage	2.1e-28	41.7
AYA64331.1\|2270605_2271769_+	hypothetical protein	A0A0B5GYH3	Vibrio_phage	3.9e-14	46.1
AYA64332.1\|2271826_2274223_+	hypothetical protein	M4SS29	Pseudoalteromonas_phage	1.1e-34	27.3
AYA64333.1\|2274232_2274646_+	hypothetical protein	A0A1J0GV49	Vibrio_phage	2.4e-06	39.4
AYA64334.1\|2274638_2275955_+	hypothetical protein	NA	NA	NA	NA
AYA64335.1\|2276023_2286598_+	hypothetical protein	I7DMS7	Pseudomonas_phage	1.0e-185	25.9
AYN07602.1\|2286626_2286917_-	hypothetical protein	NA	NA	NA	NA
AYA64336.1\|2286942_2287179_-	hypothetical protein	NA	NA	NA	NA
AYA64337.1\|2287178_2287649_-	hypothetical protein	NA	NA	NA	NA
AYA64338.1\|2287645_2288203_-	hypothetical protein	A0A2H4P7J7	Pseudomonas_phage	3.1e-41	47.6
AYA64339.1\|2288202_2288940_-	hypothetical protein	S4TNI3	Salmonella_phage	2.5e-46	46.4
AYA64340.1\|2288953_2289685_-	hypothetical protein	M4SNJ2	Pseudoalteromonas_phage	4.0e-89	66.3
AYA64341.1\|2289744_2291913_-	DUF3987 domain-containing protein	M4SL41	Vibrio_phage	6.3e-199	48.5
AYA64342.1\|2291914_2292904_-	hypothetical protein	A0A0A0YPX0	Escherichia_phage	2.1e-85	45.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage