CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP018549	Lactobacillus paragasseri JCM 5343 DNA, complete genome	0 crisprs	cas3,DEDDh,DinG,WYL,csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

602447 : 697469

120

Lactobacillus_phage(73.02%)

integrase,terminase,tail,protease,bacteriocin,portal,holin,capsid

attL 638014:638031|attR 695453:695470

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD48202.1\|602447_602675_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
BBD48203.1\|602684_602882_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
BBD48204.1\|602897_603236_+	hypothetical protein	NA	NA	NA	NA
BBD48205.1\|603957_604242_+	enterocin A immunity protein	NA	NA	NA	NA
BBD48206.1\|604421_604916_+	hypothetical protein	NA	NA	NA	NA
BBD48207.1\|605065_605245_+	hypothetical protein	NA	NA	NA	NA
BBD48208.1\|605297_605483_+	hypothetical protein	NA	NA	NA	NA
BBD48209.1\|605600_605861_+	hypothetical protein	NA	NA	NA	NA
BBD48210.1\|606275_606590_+	pediocin immunity protein PedB	NA	NA	NA	NA
BBD48211.1\|606713_609506_+	cation transport ATPase	M1HJQ2	Paramecium_bursaria_Chlorella_virus	5.1e-76	28.1
BBD48212.1\|609578_610427_+\|protease	serine protease	NA	NA	NA	NA
BBD48213.1\|610528_612025_+	amino acid ABC transporter substrate-binding and permease protein	NA	NA	NA	NA
BBD48214.1\|612008_612743_+	amino acid ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.5e-14	34.5
BBD48215.1\|612842_613364_+	GNAT family acetyltransferase	NA	NA	NA	NA
BBD48216.1\|613481_614351_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
BBD48217.1\|614367_615360_+	phosphate ABC transporter permease protein	NA	NA	NA	NA
BBD48218.1\|615359_615680_+	hypothetical protein	NA	NA	NA	NA
BBD48219.1\|615730_616249_+	hypothetical protein	NA	NA	NA	NA
BBD48220.1\|616259_617060_+	phosphate ABC transporter ATP-binding protein	M1I1R0	Paramecium_bursaria_Chlorella_virus	2.1e-06	26.0
BBD48221.1\|617070_617826_+	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.1e-16	28.2
BBD48222.1\|617843_618527_+	phosphate uptake regulator	NA	NA	NA	NA
BBD48223.1\|618661_620200_+	C4-dicarboxylate anaerobic carrier	NA	NA	NA	NA
BBD48224.1\|620280_620748_+	DNA-binding ferritin-like protein	A0A291I9P0	Lactobacillus_phage	1.6e-19	34.0
BBD48225.1\|620849_621212_+	hypothetical protein	NA	NA	NA	NA
BBD48226.1\|621270_622194_+	ribokinase	NA	NA	NA	NA
BBD48227.1\|622197_622896_+	ribose-5-phosphate isomerase A	NA	NA	NA	NA
BBD48228.1\|623011_623935_+	nucleoside hydrolase	NA	NA	NA	NA
BBD48229.1\|623934_624663_+	GntR family transcriptional regulator	NA	NA	NA	NA
BBD48230.1\|624729_625056_-	hypothetical protein	NA	NA	NA	NA
BBD48231.1\|625319_626096_+	DeoR family transcriptional regulator	NA	NA	NA	NA
BBD48232.1\|626092_626887_+	haloacid dehalogenase	NA	NA	NA	NA
BBD48233.1\|626971_629377_+	phosphoketolase	NA	NA	NA	NA
BBD48234.1\|629542_630199_+	nitroreductase	NA	NA	NA	NA
BBD48235.1\|630321_631017_+	hypothetical protein	NA	NA	NA	NA
BBD48236.1\|631067_632447_+	hemolysin-like protein	NA	NA	NA	NA
BBD48237.1\|632544_633114_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.6e-08	26.7
BBD48238.1\|633197_634508_-	amino acid permease	NA	NA	NA	NA
BBD48239.1\|634627_635338_+	lysozyme	NA	NA	NA	NA
BBD48240.1\|635348_636584_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	4.7e-34	28.2
BBD48241.1\|636583_637915_+	cellobiose-specific PTS system IIC component	NA	NA	NA	NA
638014:638031	attL	NA	NA	NA	NA
BBD48242.1\|638391_639534_+	UDP-N-acetylglucosamine 2-epimerase	A0A0N9R0B2	Chrysochromulina_ericina_virus	3.8e-30	28.8
BBD48243.1\|639571_640081_-	cell wall teichoic acid glycosylation protein	NA	NA	NA	NA
BBD48244.1\|640073_640520_-	flavodoxin	NA	NA	NA	NA
BBD48245.1\|640706_641531_+	methionine aminopeptidase	NA	NA	NA	NA
BBD48246.1\|641546_642470_+	ribonuclease BN	NA	NA	NA	NA
BBD48247.1\|642528_643437_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	5.1e-78	51.2
BBD48248.1\|643556_644240_+	hypothetical protein	NA	NA	NA	NA
BBD48249.1\|644517_645477_+\|holin	glycine betaine/carnitine/choline ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.1e-25	37.1
BBD48250.1\|645469_647017_+\|holin	glycine betaine/carnitine/choline ABC transporter substrate-binding and permease protein	NA	NA	NA	NA
BBD48251.1\|647030_647441_+	hypothetical protein	NA	NA	NA	NA
BBD48252.1\|647628_647967_+	hypothetical protein	NA	NA	NA	NA
BBD48253.1\|648034_648646_+	GTP pyrophosphokinase	NA	NA	NA	NA
BBD48254.1\|648650_649316_+	two-component system response regulator	W8CYM9	Bacillus_phage	7.7e-23	32.4
BBD48255.1\|649325_650600_+	two-component system sensor histidine kinase	NA	NA	NA	NA
BBD48256.1\|650729_653114_-	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA
BBD48257.1\|653236_654043_-	hypothetical protein	NA	NA	NA	NA
BBD48258.1\|654339_656874_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.7e-67	26.3
BBD48259.1\|656961_657732_+	haloacid dehalogenase	NA	NA	NA	NA
BBD48260.1\|658054_659158_-\|integrase	integrase	X2CYE9	Lactobacillus_phage	2.6e-124	59.7
BBD48261.1\|659159_659297_-	hypothetical protein	NA	NA	NA	NA
BBD48262.1\|659371_659998_-	hypothetical protein	A9D9J1	Lactobacillus_prophage	4.2e-87	90.4
BBD48263.1\|660058_660511_-	hypothetical protein	X2CXW8	Lactobacillus_phage	3.2e-81	92.7
BBD48264.1\|660516_660855_-	XRE family transcriptional regulator	X2CXD8	Lactobacillus_phage	3.0e-55	97.3
BBD48265.1\|661008_661233_+	transcriptional regulator	X2CXM8	Lactobacillus_phage	6.8e-32	94.6
BBD48266.1\|661265_661601_+	phage protein	X2CYF0	Lactobacillus_phage	1.4e-60	100.0
BBD48267.1\|661605_661884_+	hypothetical protein	X2CY60	Lactobacillus_phage	1.1e-44	100.0
BBD48268.1\|661999_662134_+	hypothetical protein	NA	NA	NA	NA
BBD48269.1\|662102_662378_-	hypothetical protein	NA	NA	NA	NA
BBD48270.1\|662443_662590_+	hypothetical protein	Q20DG5	Lactobacillus_phage	3.0e-12	90.2
BBD48271.1\|662641_662968_+	hypothetical protein	X2CXW9	Lactobacillus_phage	2.6e-56	97.2
BBD48272.1\|662967_663246_+	hypothetical protein	X2CXD9	Lactobacillus_phage	5.4e-39	88.0
BBD48273.1\|663251_664037_+	hypothetical protein	X2CXM9	Lactobacillus_phage	1.5e-49	82.9
BBD48274.1\|664051_665014_+	hypothetical protein	A9D9L3	Lactobacillus_prophage	2.0e-128	80.3
BBD48275.1\|665019_665355_+	hypothetical protein	Q20DG0	Lactobacillus_phage	6.4e-26	55.4
BBD48276.1\|665358_665970_+	hypothetical protein	Q20DF9	Lactobacillus_phage	2.5e-36	45.1
BBD48277.1\|665981_666728_+	phage antirepressor protein	A9D9L9	Lactobacillus_prophage	1.0e-124	89.1
BBD48278.1\|666817_667081_+	hypothetical protein	NA	NA	NA	NA
BBD48279.1\|667073_667361_+	hypothetical protein	X2CXN3	Lactobacillus_phage	4.2e-34	90.5
BBD48280.1\|667353_667674_+	hypothetical protein	NA	NA	NA	NA
BBD48281.1\|667670_667916_+	hypothetical protein	NA	NA	NA	NA
BBD48282.1\|667902_668262_+	phage related protein	A9D9N8	Lactobacillus_prophage	7.5e-57	86.6
BBD48283.1\|668331_668493_+	hypothetical protein	NA	NA	NA	NA
BBD48284.1\|668489_668951_+	Holliday junction resolvase	Q20DF1	Lactobacillus_phage	1.2e-78	96.7
BBD48285.1\|668951_669158_+	hypothetical protein	NA	NA	NA	NA
BBD48286.1\|669341_669473_+	hypothetical protein	NA	NA	NA	NA
BBD48287.1\|669462_669750_+	hypothetical protein	Q20DE9	Lactobacillus_phage	1.4e-45	91.7
BBD48288.1\|669752_669971_+	hypothetical protein	Q20DE8	Lactobacillus_phage	3.9e-32	97.2
BBD48289.1\|669957_670125_+	hypothetical protein	Q20DE7	Lactobacillus_phage	4.1e-26	100.0
BBD48290.1\|670154_670685_+	autolysin	Q20DE6	Lactobacillus_phage	2.2e-97	98.3
BBD48291.1\|671097_671247_+	hypothetical protein	NA	NA	NA	NA
BBD48292.1\|671735_672005_+	hypothetical protein	NA	NA	NA	NA
BBD48293.1\|672070_672586_+	hypothetical protein	X2CXN2	Lactobacillus_phage	3.3e-13	38.8
BBD48294.1\|672548_673778_+\|terminase	phage terminase large subunit	X2CYF4	Lactobacillus_phage	1.3e-241	97.1
BBD48295.1\|673768_675181_+\|portal	phage portal protein	Q20DD7	Lactobacillus_phage	3.6e-272	100.0
BBD48296.1\|675170_676313_+	hypothetical protein	Q20DD6	Lactobacillus_phage	4.9e-195	90.4
BBD48297.1\|676432_676990_+\|capsid	phage minor capsid protein	X2CYF9	Lactobacillus_phage	6.7e-89	96.2
BBD48298.1\|676989_678066_+\|capsid	major capsid protein	X2CY65	Lactobacillus_phage	1.0e-186	90.0
BBD48299.1\|678074_678464_+	hypothetical protein	X2CXX4	Lactobacillus_phage	1.2e-63	95.3
BBD48300.1\|678460_678823_+	phage related protein	X2CXE4	Lactobacillus_phage	1.2e-62	98.3
BBD48301.1\|678819_679254_+	hypothetical protein	Q20DD1	Lactobacillus_phage	5.1e-76	96.5
BBD48302.1\|679250_679658_+	hypothetical protein	Q20DD0	Lactobacillus_phage	1.2e-66	96.3
BBD48303.1\|679641_679851_+	hypothetical protein	X2CY66	Lactobacillus_phage	1.4e-15	59.7
BBD48304.1\|679850_681206_+	hypothetical protein	X2CXX5	Lactobacillus_phage	7.6e-243	96.9
BBD48305.1\|681217_681688_+\|tail	sheath tail protein	X2CXE5	Lactobacillus_phage	2.9e-85	99.4
BBD48306.1\|681699_682119_+	hypothetical protein	X2CXN5	Lactobacillus_phage	5.8e-69	98.6
BBD48307.1\|682355_685766_+	phage related protein	X2CYG3	Lactobacillus_phage	4.2e-242	99.3
BBD48308.1\|685767_686448_+	phage related protein	X2CY67	Lactobacillus_phage	1.1e-112	99.6
BBD48309.1\|686444_687491_+	phage related protein	X2CXX6	Lactobacillus_phage	1.5e-201	99.7
BBD48310.1\|687469_687832_+	phage related protein	Q20DC2	Lactobacillus_phage	6.6e-61	100.0
BBD48311.1\|687833_688205_+	phage related protein	X2CXN6	Lactobacillus_phage	2.0e-60	95.1
BBD48312.1\|688201_689353_+	phage related protein	X2CYG4	Lactobacillus_phage	1.4e-213	98.4
BBD48313.1\|689342_689903_+	phage related protein	Q20DB9	Lactobacillus_phage	5.2e-97	100.0
BBD48314.1\|689915_692084_+	phage related protein	X2CXX7	Lactobacillus_phage	0.0e+00	97.4
BBD48315.1\|692123_692633_+	phage related protein	X2CXE7	Lactobacillus_phage	1.5e-87	98.8
BBD48316.1\|692632_692827_+	hypothetical protein	X2CXN7	Lactobacillus_phage	4.6e-29	96.9
BBD48317.1\|692753_693203_+	hypothetical protein	Q65YV9	Lactobacillus_phage	2.1e-69	94.0
BBD48318.1\|693213_693492_+	hypothetical protein	A9D9X4	Lactobacillus_prophage	3.1e-42	97.8
BBD48319.1\|693488_693920_+	hypothetical protein	X2CY69	Lactobacillus_phage	4.0e-57	85.3
BBD48320.1\|693929_694862_+	lysin	X2CXX8	Lactobacillus_phage	9.6e-181	100.0
BBD48321.1\|695657_697469_+	glucosamine-fructose-6-phosphate aminotransferase	A7IW18	Paramecium_bursaria_Chlorella_virus	1.7e-93	38.2
695453:695470	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1161610 : 1168430

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBD48758.1\|1161610_1162036_-	restriction endonuclease	G3M9Z4	Bacillus_virus	1.2e-05	33.0
BBD48759.1\|1162339_1162477_-	hypothetical protein	NA	NA	NA	NA
BBD48760.1\|1162475_1162628_+	hypothetical protein	NA	NA	NA	NA
BBD48761.1\|1162760_1163879_-	XRE family transcriptional regulator	A0A0A7RTT7	Clostridium_phage	2.5e-58	34.2
BBD48762.1\|1163878_1164595_-	hypothetical protein	NA	NA	NA	NA
BBD48763.1\|1164857_1165844_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	5.3e-28	36.3
BBD48764.1\|1165860_1166469_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-45	50.8
BBD48765.1\|1166501_1167386_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.9e-94	58.9
BBD48766.1\|1167392_1168430_-	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	3.4e-86	47.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage