CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP018536	Lachnospiraceae bacterium GAM79 DNA, complete genome	5 crisprs	NA	0	2	0	0

1. AP018536

CRISPR-Cas detection and classification

Crispr_ID: AP018536_1

• CRISPR_ID: AP018536_1
• CRISPR_location: 527226-527341
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of AP018536_1

Consensus_repeat	Method
AAAAGATTTCAAAAAAAGTTGTTGACAAA	CRISPRCasFinder

spacers of AP018536_1

>1.1|527255|58|AP018536|CRISPRCasFinder
GTCTGACAGATATGTTAGCATAAATACCTGTCACGGAAAACAAAGTTTTCCAAGATGA

CRISPR arrays and Neighbor proteins around AP018536_1

CRISPR arrays

The CRISPR arrays of AP018536_1

>merge|AP018536|1|527226-527341|CRISPRCasFinder
AAAAGATTTCAAAAAAAGTTGTTGACAAAGTCTGACAGATATGTTAGCATAAATACCTGTCACGGAAAACAAAGTTTTCCAAGATGAAAAAAGATTTCAAAAAAGTTGTTGACAAA

>AP018536|1|1|527226-527341|CRISPRCasFinder
AAAAGATTTCAAAAAAAGTTGTTGACAAA	GTCTGACAGATATGTTAGCATAAATACCTGTCACGGAAAACAAAGTTTTCCAAGATGA
AAAAAGATTTCAAAAAAGTTGTTGACAAA

Protein sequences

Crispr_ID: AP018536_2

• CRISPR_ID: AP018536_2
• CRISPR_location: 713485-713778
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 4 spacers

Consensus repeat of AP018536_2

Consensus_repeat	Method
GTTAAATAATAAGAAAGAATTTCTACTAGTGTAGAT	PILER-CR
GTTAAATAATAAGAAAGAATTTCTACTAGTGTAGAT	CRT
AAATAATAAGAAAGAATTTCTACTAGTGTAGAT	CRISPRCasFinder

spacers of AP018536_2

>2.1|713521|27|AP018536|PILER-CR,CRT
CACGGTTGACTGATAGATGTGTCGATA
>2.2|713584|26|AP018536|PILER-CR,CRT
GTGAAACACCCTATATTGCTGTCACG
>2.3|713646|33|AP018536|PILER-CR,CRT
TTAAGTGGTGCTTAGTGATTTTTTTATTGTTAA
>2.4|713715|28|AP018536|PILER-CR,CRT
ATGTGGGTATAGCCTATGTGGTTACCGG
>2.5|713521|30|AP018536|CRISPRCasFinder
CACGGTTGACTGATAGATGTGTCGATAGTT
>2.6|713584|29|AP018536|CRISPRCasFinder
GTGAAACACCCTATATTGCTGTCACGGTT
>2.7|713646|36|AP018536|CRISPRCasFinder
TTAAGTGGTGCTTAGTGATTTTTTTATTGTTAAATA
>2.8|713715|31|AP018536|CRISPRCasFinder
ATGTGGGTATAGCCTATGTGGTTACCGGGTT

CRISPR arrays and Neighbor proteins around AP018536_2

CRISPR arrays

The CRISPR arrays of AP018536_2

>merge|AP018536|2|713485-713778|PILER-CR,CRT,CRISPRCasFinder
GTTAAATAATAAGAAAGAATTTCTACTAGTGTAGATCACGGTTGACTGATAGATGTGTCGATAGTTAAATAATAAGAAAGAATTTCTACTAGTGTAGATGTGAAACACCCTATATTGCTGTCACGGTTAAATAATAAGAAAAAATTTCTACTAGTGTAGATTTAAGTGGTGCTTAGTGATTTTTTTATTGTTAAATAAAATAATAAGAAAGAATTTCTACTAGTGTAGATATGTGGGTATAGCCTATGTGGTTACCGGGTTAAATAATAAGAAAGAATTTCTACTAGTGTAGAT

>AP018536|2|1|713485-713778|PILER-CR
GTTAAATAATAAGAAAGAATTTCTACTAGTGTAGAT	CACGGTTGACTGATAGATGTGTCGATA
GTTAAATAATAAGAAAGAATTTCTACTAGTGTAGAT	GTGAAACACCCTATATTGCTGTCACG
GTTAAATAATAAGAAAAAATTTCTACTAGTGTAGAT	TTAAGTGGTGCTTAGTGATTTTTTTATTGTTAA
ATAAAATAATAAGAAAGAATTTCTACTAGTGTAGAT	ATGTGGGTATAGCCTATGTGGTTACCGG
GTTAAATAATAAGAAAGAATTTCTACTAGTGTAGAT

>AP018536|2|1|713485-713778|CRT
GTTAAATAATAAGAAAGAATTTCTACTAGTGTAGAT	CACGGTTGACTGATAGATGTGTCGATA
GTTAAATAATAAGAAAGAATTTCTACTAGTGTAGAT	GTGAAACACCCTATATTGCTGTCACG
GTTAAATAATAAGAAAAAATTTCTACTAGTGTAGAT	TTAAGTGGTGCTTAGTGATTTTTTTATTGTTAA
ATAAAATAATAAGAAAGAATTTCTACTAGTGTAGAT	ATGTGGGTATAGCCTATGTGGTTACCGG
GTTAAATAATAAGAAAGAATTTCTACTAGTGTAGAT

>AP018536|2|2|713488-713778|CRISPRCasFinder
AAATAATAAGAAAGAATTTCTACTAGTGTAGAT	CACGGTTGACTGATAGATGTGTCGATAGTT
AAATAATAAGAAAGAATTTCTACTAGTGTAGAT	GTGAAACACCCTATATTGCTGTCACGGTT
AAATAATAAGAAAAAATTTCTACTAGTGTAGAT	TTAAGTGGTGCTTAGTGATTTTTTTATTGTTAAATA
AAATAATAAGAAAGAATTTCTACTAGTGTAGAT	ATGTGGGTATAGCCTATGTGGTTACCGGGTT
AAATAATAAGAAAGAATTTCTACTAGTGTAGAT

Protein sequences

Crispr_ID: AP018536_3

• CRISPR_ID: AP018536_3
• CRISPR_location: 986014-986107
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of AP018536_3

Consensus_repeat	Method
TTGAAAAAAGAGGGCACAATTTC	CRISPRCasFinder

spacers of AP018536_3

>3.1|986037|48|AP018536|CRISPRCasFinder
CCAAAATTATAAAAATACATTGAAAGGACTTAGATATAATAGTATAAT

CRISPR arrays and Neighbor proteins around AP018536_3

CRISPR arrays

The CRISPR arrays of AP018536_3

>merge|AP018536|3|986014-986107|CRISPRCasFinder
TTGAAAAAAGAGGGCACAATTTCCCAAAATTATAAAAATACATTGAAAGGACTTAGATATAATAGTATAATTTGAAAAAAGAGGGCACAATGTT

>AP018536|3|3|986014-986107|CRISPRCasFinder
TTGAAAAAAGAGGGCACAATTTC	CCAAAATTATAAAAATACATTGAAAGGACTTAGATATAATAGTATAAT
TTGAAAAAAGAGGGCACAATGTT

Protein sequences

Crispr_ID: AP018536_4

• CRISPR_ID: AP018536_4
• CRISPR_location: 2228825-2228933
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of AP018536_4

Consensus_repeat	Method
TCCGGACTATCGTCCTCCCTGCTCATG	CRISPRCasFinder

spacers of AP018536_4

>4.1|2228852|55|AP018536|CRISPRCasFinder
ACTAATACCGTTTTCTCCGCACTCCGTGCTCCCGAAACCGGACAACCATTCGCAC

CRISPR arrays and Neighbor proteins around AP018536_4

CRISPR arrays

The CRISPR arrays of AP018536_4

>merge|AP018536|4|2228825-2228933|CRISPRCasFinder
TCCGGACTATCGTCCTCCCTGCTCATGACTAATACCGTTTTCTCCGCACTCCGTGCTCCCGAAACCGGACAACCATTCGCACTCCGGACTATCGTCCTCCCTGCTCATG

>AP018536|4|4|2228825-2228933|CRISPRCasFinder
TCCGGACTATCGTCCTCCCTGCTCATG	ACTAATACCGTTTTCTCCGCACTCCGTGCTCCCGAAACCGGACAACCATTCGCAC
TCCGGACTATCGTCCTCCCTGCTCATG

Protein sequences

Crispr_ID: AP018536_5

• CRISPR_ID: AP018536_5
• CRISPR_location: 3115997-3116088
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of AP018536_5

Consensus_repeat	Method
CCGGTGATGGTACCGCCATACAT	CRISPRCasFinder

spacers of AP018536_5

>5.1|3116020|46|AP018536|CRISPRCasFinder
ATTAAACACATCAGTACCGGAAATCCCATCCACACCATTCCTATTT

CRISPR arrays and Neighbor proteins around AP018536_5

CRISPR arrays

The CRISPR arrays of AP018536_5

>merge|AP018536|5|3115997-3116088|CRISPRCasFinder
CCGGTGATGGTACCGCCATACATATTAAACACATCAGTACCGGAAATCCCATCCACACCATTCCTATTTCCGGTGATGGTGCCGCCATACAT

>AP018536|5|5|3115997-3116088|CRISPRCasFinder
CCGGTGATGGTACCGCCATACAT	ATTAAACACATCAGTACCGGAAATCCCATCCACACCATTCCTATTT
CCGGTGATGGTGCCGCCATACAT

Protein sequences

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP018536_2	2.4|713715|28|AP018536|PILER-CR,CRT	713715-713742	28	NZ_AP017297	Nostoc sp. NIES-3756 plasmid pNOS3756_2, complete sequence	35176-35203	6	0.786
AP018536_2	2.3|713646|33|AP018536|PILER-CR,CRT	713646-713678	33	NZ_CP013755	Lactobacillus plantarum strain DF plasmid unnamed2, complete sequence	54886-54918	9	0.727
AP018536_2	2.3|713646|33|AP018536|PILER-CR,CRT	713646-713678	33	NZ_CP013751	Lactobacillus plantarum strain KP plasmid unnamed2, complete sequence	653-685	9	0.727
AP018536_2	2.3|713646|33|AP018536|PILER-CR,CRT	713646-713678	33	NZ_CP013751	Lactobacillus plantarum strain KP plasmid unnamed2, complete sequence	62781-62813	9	0.727

1. spacer 2.4|713715|28|AP018536|PILER-CR,CRT matches to NZ_AP017297 (Nostoc sp. NIES-3756 plasmid pNOS3756_2, complete sequence) position: , mismatch: 6, identity: 0.786

atgtgggtatagcctatgtggttaccgg	CRISPR spacer
tagtgggtatagcctctgtggttttagg	Protospacer
  ************* ******* . **

2. spacer 2.3|713646|33|AP018536|PILER-CR,CRT matches to NZ_CP013755 (Lactobacillus plantarum strain DF plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

ttaagtggtgcttagtgatttttttattgttaa	CRISPR spacer
ttgcagtgttcttagtaatttttttattgtttg	Protospacer
**. .  ** ******.************** .

3. spacer 2.3|713646|33|AP018536|PILER-CR,CRT matches to NZ_CP013751 (Lactobacillus plantarum strain KP plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

ttaagtggtgcttagtgatttttttattgttaa	CRISPR spacer
ttgcagtgttcttagtaatttttttattgtttg	Protospacer
**. .  ** ******.************** .

4. spacer 2.3|713646|33|AP018536|PILER-CR,CRT matches to NZ_CP013751 (Lactobacillus plantarum strain KP plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

ttaagtggtgcttagtgatttttttattgttaa	CRISPR spacer
ttgcagtgttcttagtaatttttttattgtttg	Protospacer
**. .  ** ******.************** .