CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP023714	Rhodococcus ruber strain YC-YT1 chromosome, complete genome	1 crisprs	c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DinG,DEDDh,cas4	1	4	3
CP023712	Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence	0 crisprs	csa3,PD-DExK	0	0	1
CP023713	Rhodococcus ruber strain YC-YT1 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023714_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023714_1

629125-629205

Orphan

Consensus_repeat	Method
ACGCGCGCAACTCGCACCGACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023714_1

>merge|CP023714|1|629125-629205|CRISPRCasFinder
ACGCGCGCAACTCGCACCGACGCGCGCAACTTGCCCTGACGCGCGCCACGTGCGTCCGACGCGCGCAACTTGCACCGACGC

>CP023714|1|1|629125-629205|CRISPRCasFinder
ACGCGCGCAACTCGCACCGACGC	GCGCAACTTGCCCTGACGCGCGCCACGTGCGTCCG
ACGCGCGCAACTTGCACCGACGC

Protein	Signature genes	Signature genes Name	Protein_function
CP023714.1\|AXY50094.1\|628913_629054_+\|hypothetical-protein	unknown	unknown	unknown
CP023714.1\|AXY50095.1\|629333_630005_+\|membrane-protein	unknown	unknown	unknown
CP023714.1\|AXY50099.1\|634023_636174_+\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236864
CP023714.1\|AXY50104.1\|640667_641420_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
CP023714.1\|AXY50091.1\|626661_627876_+\|zinc-metalloprotease	unknown	unknown	gnl\|CDD\|308008
CP023714.1\|AXY50086.1\|622381_623029_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|223605
CP023714.1\|AXY50097.1\|631980_632631_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225107
CP023714.1\|AXY50101.1\|637368_638670_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|367049
CP023714.1\|AXY50087.1\|623025_624972_+\|tyramine-oxidase	unknown	unknown	gnl\|CDD\|236919
CP023714.1\|AXY50088.1\|624977_625430_+\|membrane-protein	unknown	unknown	unknown
CP023714.1\|AXY50090.1\|625975_626662_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369775
CP023714.1\|AXY50093.1\|628575_628806_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226181
CP023714.1\|AXY50092.1\|627961_628579_+\|hypothetical-protein	unknown	unknown	unknown
CP023714.1\|AXY50102.1\|638666_640100_-\|FAD-linked-oxidase	unknown	unknown	gnl\|CDD\|223354
CP023714.1\|AXY50098.1\|632780_633995_+\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|236197
CP023714.1\|AXY50100.1\|636232_637330_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379128
CP023714.1\|AXY50096.1\|630049_631984_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP023714.1\|AXY50103.1\|640236_640671_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|378454
CP023714.1\|AXY50085.1\|621548_622385_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|223605
CP023714.1\|AXY50089.1\|625545_625857_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274287

Protein	Function_ID	Function_description	E-value
CP023714.1\|AXY50099.1\|634023_636174_+\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|236864	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ.	2.39992e-137
CP023714.1\|AXY50104.1\|640667_641420_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	7.20741e-41
CP023714.1\|AXY50091.1\|626661_627876_+\|zinc-metalloprotease	gnl\|CDD\|308008	pfam02163, Peptidase_M50, Peptidase family M50.	7.91097e-44
CP023714.1\|AXY50086.1\|622381_623029_+\|amino-acid-transporter	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.47243e-08
CP023714.1\|AXY50097.1\|631980_632631_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.05966e-58
CP023714.1\|AXY50101.1\|637368_638670_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|367049	pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.	3.70445e-122
CP023714.1\|AXY50087.1\|623025_624972_+\|tyramine-oxidase	gnl\|CDD\|236919	PRK11504, tynA, primary-amine oxidase.	0
CP023714.1\|AXY50090.1\|625975_626662_+\|hypothetical-protein	gnl\|CDD\|369775	pfam08237, PE-PPE, PE-PPE domain. This domain is found C terminal to the PE (pfam00934) and PPE (pfam00823) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands.	0.00312549
CP023714.1\|AXY50093.1\|628575_628806_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	1.81068e-19
CP023714.1\|AXY50089.1\|625545_625857_+\|hypothetical-protein	gnl\|CDD\|274287	TIGR02764, Probable_polysaccharide_deacetylase_PdaB, polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown. [Cellular processes, Sporulation and germination].	1.72837e-19
CP023714.1\|AXY50102.1\|638666_640100_-\|FAD-linked-oxidase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	5.28509e-37
CP023714.1\|AXY50098.1\|632780_633995_+\|acetyl-CoA-acetyltransferase	gnl\|CDD\|236197	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase.	0
CP023714.1\|AXY50100.1\|636232_637330_+\|hypothetical-protein	gnl\|CDD\|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.00554246
CP023714.1\|AXY50096.1\|630049_631984_+\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	8.01721e-36
CP023714.1\|AXY50103.1\|640236_640671_+\|polyketide-cyclase	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	4.84631e-06
CP023714.1\|AXY50085.1\|621548_622385_+\|amino-acid-transporter	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.60703e-19

>CP023714.1|AXY50094.1|628913_629054_+|hypothetical-protein
MMPRWCWDEDEPLFGDVESPAGGVAIAGCSALIALVALLVIGPALV
>CP023714.1|AXY50093.1|628575_628806_+|XRE-family-transcriptional-regulator
MMPPESEHAVHCRLDDLLAERGMTLATLSERVGVSVANLSVLKNDRARAIRFSTLTAICHVLGCTVGDLLTVQPPR
>CP023714.1|AXY50092.1|627961_628579_+|hypothetical-protein
MSVLRPTAKDRRDLWASMAVFAGTAAVVVADYVATLSGQLSAATVTARMELGEAATPVPTPSGVQASLDGAVTTSLPVAELSPVTVALLRTGDAAQTLSYLAVLGLLALLVRRFVQGRMFDHGTYRLTYHLGWVALTIALVPMFPRITGTNMAIRDLGLTHVPGVEGSWLGAEFWLVYAGAMVLSAVAIAIRVGNRMARDQEGLV
>CP023714.1|AXY50091.1|626661_627876_+|zinc-metalloprotease
MFALGVALFALALAVSVALHEAGHLWVARRLGMKVRRFAVGRGPTVFSFRRGETEYGLGLFPVGGFCEIAGTTALDELAPGEYDRALYRQRTWKRVAVMSGGVCMNFLLAVVLVLGLAVGWGLPDLHPRIVVESVGCVPPSQGPAPGYGLVGCDGPGPAASAGIRPGDVVLAVDGRDVARFGDLVERVWQSSGVVELVIDRQGREMRVPVAVEPVQRWVVDPRSGVERSTTVGAIGLSAQPVAGPVRYGLVAAVPAAFAFTGDLVVASARTLASAPSKVASLWHSVTGGERDADTPVSVVGAASLGGQAAERGMWESFVLLMVGLNLFVGLVNLLPLLPLDGGHTAVAVYEACRNRVRRLRGLSDAGPVDFGKLLPVTYAFVVAGGAFTVLTVVADVVAPIRLA
>CP023714.1|AXY50090.1|625975_626662_+|hypothetical-protein
MILSAVRVAIVGALTIGSMFGAVSIAHADPSPAAYCAPTVVLAVDGTKGPETPDSIDPDSPLNSYTDQYRDSSDFAVRHVRYPAGMVAGVFGWDTFMDQSVQIGVQNLWAEIGRTEAACGPRTRYELYGYSQGAIVVRRVAMEIDAVPPVHDDGTDLQDRVRVHLIADPAQGRPAQYAGPLVPGITLPQPAGELRHIPVTTECLEGDMICDPEGNVSGYIREHATYHP
>CP023714.1|AXY50089.1|625545_625857_+|hypothetical-protein
MPLFRFPFGVRTDADIRVVNDAGYVPVRWTVDSLGWKGTSGGLDVGAVTDRVVSAAVPGQIVLMHMGTNPDDGTTLDADALPAIIDGLRTRSYSFVDPVDVVR
>CP023714.1|AXY50088.1|624977_625430_+|membrane-protein
MSTTDPAARRTTFPWCGRAAAALAVASAVLHVGALGGHAPSPAPAVLTLVMTAGCLYCARHLWRRGNQRDWILVTVMNVVMIMLHLTTMSPGGGGGGHHGHAVPVVAGGTADASMPPLMAAALAVAAAEILLAVSVVFHRTRGLDPAIAG
>CP023714.1|AXY50087.1|623025_624972_+|tyramine-oxidase
MSTATTPFTEAASTPAPDHPLSPLTADEITAVKETVSAAGLVTEHVRFVYVGLEEPPKSTVLAFRPGEHVERRARVLLLDRATGAGSDHVVSVTERRILGTVAVDAATDGHVPILDEEFEDIESFLLSSFDWIAAMAARGIEPQKVRAVPLSAGVFGHEDEVGHRIVRVLAFHQEDEADLPWAHPIDGVVAYVDLTEQRVVKVVDEITLPVPAERGEWDAAPHETPVRTDLKPIEITQPEGPSFSVDGNRITWADWTFRFGFDVREGLTLHQLSFSDDGVERPVIYRASIAEMVVPYADPSPVRYWQNYFDQGEYLFGRYTNSLELGCDCLGEIQYFDVTIADEKGDPRVMKNAICLHEEDYGVLWKHTDMFNGMTETRRSRRLVISFFLTIGNYDYGFYWYLYLDGTIELEAKATGIVFTSAYRGEDGFATEMAPGLGAPFHQHLFSARLDMAVDGNVNTVEEVDAVPEPMGPDNPWGNAFRCRKTTLTTEAEGQRLADNTKARVWHITNPTKQNRLGRNVGYALHPEGQPVLLADPSSSIAARAAFATRHLWVTQYDPAQRYPAGDFVNQHPGQGGLPTFVAGNRNIEGEDLVLWHTFGLTHFPRPEDWPVMPVDYAGFTLKPVGFFDRNPALDVPAGPSKHCCTD
>CP023714.1|AXY50086.1|622381_623029_+|amino-acid-transporter
MIVDTATRYVGAAAGDVVQVLLVTSLFAALLSFHNVLSRYIFSLGNSAALPARCGRSHERHASPYVASVVQTVSALVLVVASAVGGLDPVTEVFAWFAGVASVGVLALMALTSIAVLVFFRRSRADTRPWPTLIAPALGLAGLGALLTMTIANLPLLVGGSSTLAAVIAVVLAGTFAGGAAVAALRPDAARNTHPHGGLAPAVTTEPLIDKEIAR
>CP023714.1|AXY50085.1|621548_622385_+|amino-acid-transporter
MTLNARAHEPPTHRLSGSLGPGAVVFMVVAAAAPLTVIAGTVPLGISAGNGAAFPASYVVCTVVLLFFAVGFTAMAKHVPGAGAFYTFVTHGLGRHAGLGSAFLALLSYTAVQGAVYGYIGAALDDFVTAHGGPELPWYLWALIVLVAVAVLGYRHIDLSGKVLGVLLLCEVGIVLVIDAAVVVRGGAEGLSTAALRPSEFFSGAPGIALIFAVAGYIGFEATAVFRDEVRDPARTVPRATYLALVVIGGFYALSSWALVSAWGDEGAVALATENPRA
>CP023714.1|AXY50095.1|629333_630005_+|membrane-protein
MTEDSRTGARRASSSAWAWGGAVAGLAGVVAIQASMGMGAAYDESTAGNASAIADAFAGERTELLVMHLSLMVSTVLLLIFAAGLQRRLRIALPDDSLLPAVAAFGLLLTATACLLGAGLDTELLFGLSEPGQMVAEVAVVGSHWVGTIPWLWVGAGVSGLAVAAASLRHGATPQWLGWASVVLGGLTALLGISPLQYMAGFVGPVWVLVAGVGFAVSDRARR
>CP023714.1|AXY50096.1|630049_631984_+|histidine-kinase
MAVADASETAAGTGGAPGPAAVVAVLSCGLAVAALAVFAAARPDLDSDQLFFLVDVVGAAVYGTVAGVVLARRVHPVPLLLSLASIGVGLSALSYAWTKLAQVRPGLPFAGVLAPLQSTTWIPGTLALFLVVPWLVRDTPLDRRARLGVLTGSAVTGWFFWARTFTGTAVGWLVLPVVTVGLLAAADITYRWRRGPVSDRIGLGWLALGTALMAVSYIPLAVPGLPWMLTPLLHLTTQAFYPIAILVVVLRQRLWGLDLAVSRAAVAGSLVAVLATGYLVVTATVALILPTDGSVVAQAVAAVAVALAVQPVRAWLTRRVHILVYGEGDDPASAVRRLGRHFAGAQTPRQLLEDLAAGIGVALRLESVTVRRGDEMLARWGTPTGPAEEVVLRDGRVAVTAPPGETLGPRSLRALGELASVVEAGLVVLRSSEELDAARARLTEARLAERRTIRRELHDGLGPSLAGIRLGLQGARNLVDTDSADAVPLIDSLLRELDHQVEGVRELSRGLLPPALDELGLAAALEEMSAVHSRSGFRVEVDADVPSGRSGPVVAAAYGIAAEAVTNARRHSGADGCRVRVRASADRLTLEVRDAGRGMDRNARRGVGTHSMRERAEDVGGSVAITGAQPHGTVVTAHLPWGPS
>CP023714.1|AXY50097.1|631980_632631_+|LuxR-family-transcriptional-regulator
MSAPTAIAVAVVDDHPVFRLGLVALLGTLDGIEVVAQASSVAEALEVITADVDVVLMDLELGDGSGIEATRLLLGRFPELRVLVVTMHEDEDSLVASVRAGARGYLVKGADPSGVERAIRAVADGEVIVGAAVAAKAIGAMAASRTLAPTVFPELTDREREVLDLMARGHDNATIARRLVLSPKTVRNHVSNVLGKLGAADRSTAIVQAREAGLGV
>CP023714.1|AXY50098.1|632780_633995_+|acetyl-CoA-acetyltransferase
MTSEAFIYEAIRTPRGRGKKTGSLHSVKPISLVTGLIDELRVRFPDLDENRISDLILGVVGPVGDQGADIARTAVTAARMPDTVGGVQINRFCASGLEAVNMAAQKVRSGWDELVVAGGVESMSRVPMGSDGGPWALDPATNYDTYFVPQGVSADLIATMEGFSREDVDAYALRSQQLAAAAWSGGYFAKSVVPVKDQNGLTVLDHDEHMRPDTTLAGLAGLQPSFAMVGEMGGFDAVALQKFHFVEKIDHVHHGGNSSGIVDGAALVLVGSEQAGKDMGLTPRARIVATATSGADSTIMLTGPTPAAHKVLAAAGLTVDDIDLFEINEAFASVVLKFQKDLKIPDEKLNVNGGAIAMGHPLGATGAMIMGTMVDELERRGARRALVTLCIGGGMGVATIIERV
>CP023714.1|AXY50099.1|634023_636174_+|3-hydroxyacyl-CoA-dehydrogenase
MTENNMIGWERDADGIVVLTLDDPNQGANTMNELYKASMKATVDRLVAEKDDITGVVITSAKKTFFAGGDLKNMIKVGPEDAQRIFDEVEAIKADLRRLETLGKPVVAAINGAALGGGLEIALATHHRIAADVKGVQIGLPEATLGLLPGGGGVTRTVRMLGLQTALMQVLLQGQRYNPAKAKEIGLIDEIVGGIDELVPAAKAWIKANPEGGVQPWDKKGFKIPGGTPASPAFAANLPAFPANLRKQLKGAPMPAPRAIMAAAVEGSQVDIDNASKIEGRYFTELVTGQVAKNMIQAFFFDMQAINSGASRPNQADGTPFPKTTFRKVAVLGAGMMGAGIAYVCAKAGMDVILKDVSIESAQKGKAYSEGLEAKALSRGKTTEEKSAALLARITPSADVADLAGADLVIEAVFENTELKHKVFQEIQDVVAPDAVLGSNTSTLPITGLAEGVMRQEDFIGLHFFSPVDKMPLLEIIAGEKTSDATLAKAFDLAQQIRKTPIVVNDSRGFFTSRVIGTFVNEAIRMVGEGIEPATIEQAGSQAGYPAPPLQLSDELNLTLMQKIRKETEAATEASGLKVPQDDSSTVVDFLVDEGRPGRAGGGGFYEYVDGKRSRIWPGLREKFDSAPTDIPIQDLIERMLFIEAIETQKCFDEGVLRTTADANIGSILGIGFPAWTGGVAQYIAGYPGGKEGFVKRAEELAAKYGERFTPPASLR
>CP023714.1|AXY50100.1|636232_637330_+|hypothetical-protein
MRAPGHGRGPSFVAGSAIIDRMGDFEKSDVQKLFDDRAGLVTQTELTDLGVGRGTVRHLLDTGRWQRVLQGVYAVSSGPLTRTMVLEAALLYGGGAAMLSHRTAAELWGMLPVDDTAPVHITVPVGRSALPQRATMRAPGRKATLPVSKPDAVLHPGVIVHRSRAHAHIGVDRYLPRTTKVDTALDLATAQPSPREAYLSLISTVTNAGIRLHTVRRRLEERPPYRYRTALDEAVTLLAEGVQSVLEYHYAIDVERAHALPVADRQSPVVVDGRTLYEDCTYDGAGCPLTVRLDGRWVHSMREVAFRDRRRDNAAELAGRSRLVFGYREVASSPCDVAREVETVLTRLGWVRDEPNPCSCRARFW
>CP023714.1|AXY50101.1|637368_638670_-|cyclopropane-fatty-acyl-phospholipid-synthase
MTTLREPGIPDGRLTLAQILETVTGGELPVRFTAYDGSSAGPADAPYGLRLTSTRGTTYLATAPGDLGMARAYVSGDLEAEGVHPGNPYELLKALGDLHFQRPPALTLAQIARSLGLETLKPIAPPPQEHLPRWRRFAEGLRHSRSRDAEVIHHHYDVSNAFYEHVLGPSMTYTCALFDSEAQSLEDAQENKYRLVFEKLRLQPGDRLLDIGCGWGGMVRYAARRGVKALGVTLSREQAEWAQKAIADEGLTDLAEVRFSDYRDVPETGFDAISSIGLTEHIGVQNYPTYFRRLHDKLREGGLLLNHCITRPVNRGPVKAGGFIDRYVFPDGELTGSGRIITEIQDIGLEVLHEENLRQHYALTLKGWCENLVANWDACVAEVGEGTARVWGLYMAGSRLGFERNVVQLHHVLAVKLGPDQEPNVPLRPWWVA
>CP023714.1|AXY50102.1|638666_640100_-|FAD-linked-oxidase
MQKPKSVVVPSGESAHRAGVERLLRSYRAIPADAPVRLAKKTSNLFRARARVNAPGLDVSGLGGVVSVDPVARTADVAGMCTYEDLVDATLPHGLAPLVVPQLKTITLGGAVTGLGIESTSFRNGLPHESVLEMDILTGAGEIVTATPDGEHADLFHGFPNSYGTLGYATRLRIELEPVKPYVALRHLRFDSLDEMQSALDRIATERVHAGVPVDYLDGVMFSAAESYLTLGTQTDAPGPVSDYTGENIYYRSIQHASVNHPRTDRLTVRDYLWRWDTDWFWCSRAFGAQDPRIRRLWPKRLLRSSFYWKLIALDHRYGVADRIERRKGNLPRERVVQDIEVPIERTAEFLRWFLDEIPIEPVWLCPLRLREGGPVARDAQRPWPLYPLEPKRTYVNVGFWSSVPAVAGEIEGAANRRIEHKVAELDGHKSLYSDSYYTRAEFEELYYGGGDYPALKKRYDPESRLLDLFSKAVHNR
>CP023714.1|AXY50103.1|640236_640671_+|polyketide-cyclase
MGQVSASSSIQLAAAPERVLEALADYESVRPRILPEQYRDYRVLSGGRGDGTVVHWILQATKKRARDVEARVAVSGSTITERDANSSLVTTWSVVPNGTGSTVVTLTEWKGAGGIGGFFEKTFAPLGLRKIQEQVLANLKRELD
>CP023714.1|AXY50104.1|640667_641420_-|N-acetylmuramoyl-L-alanine-amidase
MRGLSRRITVAATCVLALSLPGVPATATPDLPLTGRTVFLDPGHNGTNDASITAQVPTGRGGTKNCQTTGTSTDSGYAEHTFNWDVAMLVRAELGELGAHVLLSRPDDASVAACVDRRAEEANASGADVVVSLHADGGPADGRGFHVNYSAPPLDEVQAGPSVALAVAVRDALVDAGLTPSTYLGTDGLLGRDDLAGLNLARRPSVLVELGNMRNATDAATMTDPDGRQRYATAVVAGIVAFAGDPADAL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP023714_4	4.1\|4529851\|19\|CP023714\|CRT	4529851-4529869	19	CP023714.1	4741609-4741627	2	0.895

1. spacer 4.1|4529851|19|CP023714|CRT matches to position: 4741609-4741627, mismatch: 2, identity: 0.895

gccgcccaggtcgggcgct	CRISPR spacer
gccgcccgcgtcgggcgct	Protospacer
*******. **********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP023714_2	2.1\|3416420\|31\|CP023714\|CRISPRCasFinder	3416420-3416450	31	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	41927-41957	8	0.742
CP023714_2	2.1\|3416420\|31\|CP023714\|CRISPRCasFinder	3416420-3416450	31	MT522001	Microbacterium phage Karate, complete genome	41572-41602	8	0.742
CP023714_2	2.1\|3416420\|31\|CP023714\|CRISPRCasFinder	3416420-3416450	31	NC_005262	Burkholderia cepacia phage Bcep22, complete genome	54330-54360	8	0.742
CP023714_4	4.4\|4530001\|31\|CP023714\|CRT	4530001-4530031	31	NZ_CP021356	Rhodococcus sp. S2-17 plasmid pRB29, complete sequence	159603-159633	8	0.742
CP023714_2	2.1\|3416420\|31\|CP023714\|CRISPRCasFinder	3416420-3416450	31	NC_019917	Burkholderia phage BcepMigl, complete genome	53620-53650	9	0.71
CP023714_2	2.1\|3416420\|31\|CP023714\|CRISPRCasFinder	3416420-3416450	31	FJ937737	Burkholderia cenocepacia phage BcepIL02, complete genome	53288-53318	9	0.71
CP023714_2	2.1\|3416420\|31\|CP023714\|CRISPRCasFinder	3416420-3416450	31	NC_012743	Burkholderia phage BcepIL02, complete genome	53288-53318	9	0.71
CP023714_2	2.1\|3416420\|31\|CP023714\|CRISPRCasFinder	3416420-3416450	31	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	210364-210394	9	0.71
CP023714_4	4.2\|4529893\|31\|CP023714\|CRT	4529893-4529923	31	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	191941-191971	9	0.71
CP023714_4	4.3\|4529947\|31\|CP023714\|CRT	4529947-4529977	31	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	191941-191971	9	0.71
CP023714_4	4.4\|4530001\|31\|CP023714\|CRT	4530001-4530031	31	NZ_CP017589	Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ08, complete sequence	9479-9509	9	0.71
CP023714_4	4.4\|4530001\|31\|CP023714\|CRT	4530001-4530031	31	KC170278	Uncultured bacterium plasmid pMBUI4, complete sequence	17617-17647	10	0.677

1. spacer 2.1|3416420|31|CP023714|CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
ggcgcgcgccacgtcgtccaggcgcaccgac	Protospacer
****************** ***.   *.  *

2. spacer 2.1|3416420|31|CP023714|CRISPRCasFinder matches to MT522001 (Microbacterium phage Karate, complete genome) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
gacgcgcgccacgtcgtcaatggcgttcttg	Protospacer
*.****************** * ***....

3. spacer 2.1|3416420|31|CP023714|CRISPRCasFinder matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
gaggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
*. ***************.******  . *

4. spacer 4.4|4530001|31|CP023714|CRT matches to NZ_CP021356 (Rhodococcus sp. S2-17 plasmid pRB29, complete sequence) position: , mismatch: 8, identity: 0.742

accggccagctcgctacccagat-----cggccgcc	CRISPR spacer
tcgggccacctcgctacccagatgggggcgg-----	Protospacer
 * ***** **************     ***

5. spacer 2.1|3416420|31|CP023714|CRISPRCasFinder matches to NC_019917 (Burkholderia phage BcepMigl, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . *

6. spacer 2.1|3416420|31|CP023714|CRISPRCasFinder matches to FJ937737 (Burkholderia cenocepacia phage BcepIL02, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . *

7. spacer 2.1|3416420|31|CP023714|CRISPRCasFinder matches to NC_012743 (Burkholderia phage BcepIL02, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . *

8. spacer 2.1|3416420|31|CP023714|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
atggcgcgccaagtggtcaaggtcgtggtca	Protospacer
.  ******** ** ***********  .*

9. spacer 4.2|4529893|31|CP023714|CRT matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

cccaccgagacccgcacccagatccaccgca	CRISPR spacer
atcaccgcgacccgtacccagatccgggaga	Protospacer
 .***** ******.**********.  . *

10. spacer 4.3|4529947|31|CP023714|CRT matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

cccaccgagacccgcacccagatccaccgca	CRISPR spacer
atcaccgcgacccgtacccagatccgggaga	Protospacer
 .***** ******.**********.  . *

11. spacer 4.4|4530001|31|CP023714|CRT matches to NZ_CP017589 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ08, complete sequence) position: , mismatch: 9, identity: 0.71

accggccagctcgctacccagatcggccgcc	CRISPR spacer
catatccagctcgctgcccagctcggccatc	Protospacer
  .. **********.***** ******..*

12. spacer 4.4|4530001|31|CP023714|CRT matches to KC170278 (Uncultured bacterium plasmid pMBUI4, complete sequence) position: , mismatch: 10, identity: 0.677

accggccagctcgctacccagatcggccgcc	CRISPR spacer
tttcgccagctcgctagccagctcggcgcgg	Protospacer
 .. ************ **** *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

122000 : 201355

Enterobacteria_phage(27.78%)

transposase,integrase

attL 165996:166055|attR 168660:168742

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY49578.1\|122000_122315_+\|transposase	transposase	Q9ETV7	Enterobacteria_phage	1.0e-09	37.6
AXY49579.1\|122311_123274_+\|transposase	transposase	Q8W6R2	Burkholderia_virus	3.0e-60	53.8
AXY49580.1\|123252_124989_-	hypothetical protein	NA	NA	NA	NA
AXY49581.1\|125584_126373_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-33	35.3
AXY49582.1\|126369_127929_-\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	5.6e-16	27.6
AXY49583.1\|128373_128559_-	cobyrinic acid a,c-diamide synthase	NA	NA	NA	NA
AXY49584.1\|129424_129667_-	hypothetical protein	NA	NA	NA	NA
AXY49585.1\|130272_130455_+	hypothetical protein	NA	NA	NA	NA
AXY49586.1\|130451_130856_+	hypothetical protein	NA	NA	NA	NA
AXY49587.1\|130891_131188_+	hypothetical protein	NA	NA	NA	NA
AXY49588.1\|131549_133052_+	hypothetical protein	NA	NA	NA	NA
AXY49589.1\|133109_133550_+\|transposase	transposase	NA	NA	NA	NA
AXY49590.1\|133546_134560_+\|transposase	transposase	NA	NA	NA	NA
AXY49591.1\|134661_135576_+	alpha/beta hydrolase fold protein	NA	NA	NA	NA
AXY49592.1\|136117_136843_-	aldolase	NA	NA	NA	NA
AXY49593.1\|136949_138392_+	Rieske (2Fe-2S) iron-sulfur domain-containing protein	NA	NA	NA	NA
AXY49594.1\|138388_138979_+	3-phenylpropionate dioxygenase	NA	NA	NA	NA
AXY49595.1\|138975_139299_+	hypothetical protein	NA	NA	NA	NA
AXY49596.1\|139295_139490_+	ferredoxin phthalate 3,4-dioxygenase ferredoxin subunit	NA	NA	NA	NA
AXY49597.1\|139502_140723_+	FAD-dependent pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
AXY49598.1\|140855_141563_+	IclR family transcriptional regulator	NA	NA	NA	NA
AXY49599.1\|141588_142428_+	2,5-diketo-D-gluconic acid reductase	A0A2H4PQR8	Staphylococcus_phage	2.5e-50	37.2
AXY49600.1\|142472_143048_-\|transposase	transposase IS4 family protein	NA	NA	NA	NA
AXY49601.1\|143482_143632_-	putative site-specific recombinase	NA	NA	NA	NA
AXY49602.1\|143826_144267_+\|transposase	transposase	NA	NA	NA	NA
AXY49603.1\|144263_145277_+\|transposase	transposase	NA	NA	NA	NA
AXY49604.1\|146024_146804_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.4e-23	32.1
AXY49605.1\|146800_148351_-\|transposase	transposase	NA	NA	NA	NA
AXY49606.1\|148604_149354_-	hypothetical protein	NA	NA	NA	NA
AXY49607.1\|149791_150580_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-33	35.3
AXY49608.1\|150576_152136_-\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	5.6e-16	27.6
AXY49609.1\|153199_154030_+\|transposase	transposase	NA	NA	NA	NA
AXY49610.1\|154023_154437_-	putative LuxR family transcriptional regulator	NA	NA	NA	NA
AXY49611.1\|156542_157199_-	hypothetical protein	NA	NA	NA	NA
AXY49612.1\|157180_158002_-	hypothetical protein	NA	NA	NA	NA
AXY49613.1\|158009_158450_+\|transposase	transposase	NA	NA	NA	NA
AXY49614.1\|158446_159460_+\|transposase	transposase	NA	NA	NA	NA
AXY49615.1\|159598_160408_+	hypothetical protein	NA	NA	NA	NA
AXY49616.1\|160404_161871_+	UBA/THIF-type NAD/FAD binding protein	NA	NA	NA	NA
AXY49617.1\|161867_163157_+	hypothetical protein	NA	NA	NA	NA
AXY49618.1\|163216_164617_+\|transposase	putative transposase	A0A222ZN33	Mycobacterium_phage	4.2e-87	43.4
AXY49619.1\|164793_165306_+	hypothetical protein	NA	NA	NA	NA
AXY49620.1\|165338_165467_+	hypothetical protein	NA	NA	NA	NA
AXY49621.1\|165746_166079_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	1.2e-08	34.0
165996:166055	attL	NA	NA	NA	NA
AXY49622.1\|166240_167800_+\|integrase	integrase	NA	NA	NA	NA
AXY49623.1\|167796_168540_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	8.1e-13	26.5
AXY49624.1\|168656_169193_-\|transposase	transposase	NA	NA	NA	NA
168660:168742	attR	NA	NA	NA	NA
AXY49625.1\|169192_170761_-\|transposase	transposase	NA	NA	NA	NA
AXY49626.1\|170932_174034_-	hypothetical protein	Q8V6N5	Halorubrum_phage	7.3e-15	31.7
AXY49627.1\|174367_175135_+	putative resolvase	A0A219YB42	Aeromonas_phage	5.9e-27	42.0
AXY49628.1\|175409_175991_-	hypothetical protein	NA	NA	NA	NA
AXY49629.1\|176017_176182_+	hypothetical protein	NA	NA	NA	NA
AXY49630.1\|176249_177866_-	hypothetical protein	NA	NA	NA	NA
AXY49631.1\|177937_178708_-	putative insertion element ATP-binding protein	NA	NA	NA	NA
AXY49632.1\|178704_180264_-\|transposase	transposase	K4I413	Acidithiobacillus_phage	1.6e-55	31.8
AXY49633.1\|180597_180978_+	resolvase	A0A1B0V7I5	Salmonella_phage	6.1e-25	50.0
AXY49634.1\|181346_182546_-	3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
AXY49635.1\|182542_183787_-	3-carboxy-cis,cis-muconate cycloisomerase	NA	NA	NA	NA
AXY49636.1\|183792_184362_-	protocatechuate 3,4-dioxygenase alpha subunit	NA	NA	NA	NA
AXY49637.1\|184358_185126_-	protocatechuate 3,4-dioxygenase beta subunit	NA	NA	NA	NA
AXY49638.1\|185196_185952_+	putative IclR family transcriptional regulator	NA	NA	NA	NA
AXY49639.1\|186610_187732_+	hypothetical protein	NA	NA	NA	NA
AXY49640.1\|187776_188097_-	hypothetical protein	NA	NA	NA	NA
AXY49641.1\|188623_189229_-	hypothetical protein	NA	NA	NA	NA
AXY49642.1\|189369_190605_-	putative ferredoxin reductase	NA	NA	NA	NA
AXY49643.1\|190601_190799_-	putative 3Fe-4S ferredoxin	NA	NA	NA	NA
AXY49644.1\|190847_191153_-	hypothetical protein	NA	NA	NA	NA
AXY49645.1\|191149_191761_-	putative benzene dioxygenase small subunit	NA	NA	NA	NA
AXY49646.1\|191763_193227_-	putative benzene dioxygenase large subunit	NA	NA	NA	NA
AXY49647.1\|193365_194127_-	putative aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.5e-49	40.5
AXY49648.1\|194300_195443_-	hypothetical protein	NA	NA	NA	NA
AXY49649.1\|195548_196205_-	hypothetical protein	NA	NA	NA	NA
AXY49650.1\|196256_196631_-	ABC transporter permease	NA	NA	NA	NA
AXY49651.1\|197053_197500_-	transporter permease 1	NA	NA	NA	NA
AXY49652.1\|197844_198174_-	transporter ATPase	NA	NA	NA	NA
AXY49653.1\|198668_199526_-	ABC transporter, substrate binding protein	NA	NA	NA	NA
AXY49654.1\|199587_199716_+	hypothetical protein	NA	NA	NA	NA
AXY49655.1\|200031_200457_-\|transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	2.4e-30	51.1
AXY49656.1\|200453_200573_-	hypothetical protein	NA	NA	NA	NA
AXY49657.1\|200689_201355_-\|transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-24	38.0

DBSCAN-SWA_2

2198175 : 2241103

Microbacterium_phage(25.0%)

transposase,terminase,portal,protease,head,integrase

attL 2223867:2223903|attR 2244356:2244392

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY51618.1\|2198175_2198553_+\|protease	ATP-dependent Clp protease ClpS	NA	NA	NA	NA
AXY51619.1\|2198608_2199187_+	hypothetical protein	NA	NA	NA	NA
AXY51620.1\|2199183_2200290_+	hypothetical protein	NA	NA	NA	NA
AXY51621.1\|2200295_2200448_-	hypothetical protein	NA	NA	NA	NA
AXY51622.1\|2200604_2201231_+	hypothetical protein	NA	NA	NA	NA
AXY51623.1\|2201361_2202117_+	hypothetical protein	NA	NA	NA	NA
AXY51624.1\|2202130_2202919_+	ribonuclease PH	NA	NA	NA	NA
AXY51625.1\|2202911_2203538_+	nucleoside-triphosphate diphosphatase	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	3.0e-08	31.6
AXY51626.1\|2203679_2204066_-	membrane protein	NA	NA	NA	NA
AXY51627.1\|2204062_2204482_-	hypothetical protein	NA	NA	NA	NA
AXY51628.1\|2204730_2204898_+	hypothetical protein	NA	NA	NA	NA
AXY51629.1\|2205574_2214829_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA
AXY51630.1\|2214869_2215271_+	4'-phosphopantetheinyl transferase	NA	NA	NA	NA
AXY51631.1\|2215282_2215999_-	TetR family transcriptional regulator	NA	NA	NA	NA
AXY51632.1\|2216167_2217043_-	SAM-dependent methyltransferase	NA	NA	NA	NA
AXY51633.1\|2217215_2218565_+	hypothetical protein	NA	NA	NA	NA
AXY51634.1\|2218573_2219050_-	peroxiredoxin	NA	NA	NA	NA
AXY51635.1\|2219124_2219346_+	hypothetical protein	NA	NA	NA	NA
AXY51636.1\|2219581_2220349_+	membrane protein	NA	NA	NA	NA
AXY51637.1\|2220389_2221226_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA
AXY51638.1\|2221481_2222654_+\|transposase	transposase IS891	A0A1D8ETH9	Propionibacterium_phage	3.2e-125	61.6
AXY51639.1\|2222684_2223500_-	alpha/beta hydrolase	NA	NA	NA	NA
AXY51640.1\|2223716_2223908_+	hypothetical protein	NA	NA	NA	NA
2223867:2223903	attL	NA	NA	NA	NA
AXY51641.1\|2223983_2224799_+\|integrase	integrase	A0A1B1SGM4	Mycobacterium_phage	1.0e-61	48.7
AXY51642.1\|2224836_2225055_+	hypothetical protein	NA	NA	NA	NA
AXY51643.1\|2225061_2225550_-	hypothetical protein	NA	NA	NA	NA
AXY51644.1\|2225549_2226482_-	structural protein	M9MUD6	Rhodococcus_phage	5.5e-27	51.7
AXY51645.1\|2226495_2229375_-	hypothetical protein	NA	NA	NA	NA
AXY51646.1\|2229400_2232199_-	hypothetical protein	NA	NA	NA	NA
AXY51647.1\|2232202_2232496_-	hypothetical protein	NA	NA	NA	NA
AXY51648.1\|2232492_2232789_-	hypothetical protein	A0A142KBV7	Gordonia_phage	2.3e-19	50.6
AXY51649.1\|2232785_2233559_-	hypothetical protein	A0A2H4J9K9	uncultured_Caudovirales_phage	1.2e-91	82.0
AXY51650.1\|2233653_2233905_-	hypothetical protein	NA	NA	NA	NA
AXY51651.1\|2233909_2234302_-	hypothetical protein	NA	NA	NA	NA
AXY51652.1\|2234301_2234721_-	hypothetical protein	A0A2R3ZZJ6	Microbacterium_phage	1.8e-22	45.4
AXY51653.1\|2234723_2235137_-	hypothetical protein	NA	NA	NA	NA
AXY51654.1\|2235118_2235454_-	hypothetical protein	NA	NA	NA	NA
AXY51655.1\|2235456_2237040_-	hypothetical protein	A0A2R4A075	Microbacterium_phage	2.9e-60	35.3
AXY51656.1\|2237036_2237444_-\|head,protease	phage prohead protease	A0A160DHT4	Gordonia_phage	1.7e-20	45.7
AXY51657.1\|2237440_2238622_-\|portal	phage portal protein	D2JLE6	Staphylococcus_phage	2.6e-05	28.9
AXY51658.1\|2238670_2240155_-\|terminase	phage terminase family protein	A0A2R4A0B0	Microbacterium_phage	4.6e-60	33.9
AXY51660.1\|2240151_2240484_-	hypothetical protein	NA	NA	NA	NA
AXY51659.1\|2240476_2240602_+	hypothetical protein	NA	NA	NA	NA
AXY51661.1\|2240830_2241103_-	hypothetical protein	A0A2D1GAC4	Mycobacterium_phage	3.7e-08	43.5
2244356:2244392	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2845658 : 2853843

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY52258.1\|2845658_2846456_+	iron ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.3e-07	27.1
AXY52259.1\|2846470_2847724_+	cysteine desulfurase	Q2XUY6	environmental_halophage	4.3e-99	45.4
AXY52260.1\|2847723_2848212_+	nitrogen fixation protein NifU	A0A0K1LSF9	Mycobacterium_phage	2.4e-21	44.4
AXY52261.1\|2848211_2848592_+	hypothetical protein	NA	NA	NA	NA
AXY52262.1\|2848675_2849101_+	MarR family transcriptional regulator	NA	NA	NA	NA
AXY52263.1\|2849145_2850120_-	DNA repair protein	A0A249XRB2	Mycobacterium_phage	1.4e-52	43.2
AXY52264.1\|2850172_2851297_-	lycopene cyclase	NA	NA	NA	NA
AXY52265.1\|2851300_2852032_-	3-ketoacyl-ACP reductase	A0A0M4JSW6	Mollivirus	2.6e-08	33.9
AXY52266.1\|2852214_2853843_+	ABC transporter	A0A2K9L0W2	Tupanvirus	2.5e-38	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP023712

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27507 : 31616

Gordonia_phage(66.67%)

integrase,protease

attL 26579:26592|attR 32099:32112

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
26579:26592	attL	NA	NA	NA	NA
AXY49237.1\|27507_28197_+\|integrase	integrase catalytic subunit	A0A059NT83	Lactococcus_phage	2.9e-09	28.6
AXY49238.1\|28219_28570_+	hypothetical protein	A0A1B3AZF8	Gordonia_phage	2.7e-19	60.6
AXY49239.1\|28566_29484_+	Mobile element protein	A0A1B3AZE5	Gordonia_phage	6.1e-87	56.1
AXY49240.1\|29607_29760_+	hypothetical protein	NA	NA	NA	NA
AXY49241.1\|29864_30215_+	hypothetical protein	A0A1B3AZF8	Gordonia_phage	2.7e-19	60.6
AXY49242.1\|30211_31129_+	Mobile element protein	A0A1B3AZE5	Gordonia_phage	6.1e-87	56.1
AXY49243.1\|31181_31616_-\|protease	ATP-binding protease	A0A249XSS8	Mycobacterium_phage	4.1e-17	45.8
32099:32112	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP023713

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3579 : 47099

Acidithiobacillus_phage(36.36%)

integrase,transposase

attL 8262:8321|attR 12466:12627

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY49378.1\|3579_5130_-\|transposase	transposase	NA	NA	NA	NA
AXY49379.1\|5348_5471_+	hypothetical protein	NA	NA	NA	NA
AXY49380.1\|5493_5853_+	hypothetical protein	NA	NA	NA	NA
AXY49381.1\|5961_6705_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.0e-28	34.7
AXY49382.1\|6701_8261_-\|integrase	integrase	K4I413	Acidithiobacillus_phage	5.2e-70	35.1
8262:8321	attL	NA	NA	NA	NA
AXY49383.1\|8318_8549_+	hypothetical protein	NA	NA	NA	NA
AXY49384.1\|8922_9429_-	hypothetical protein	NA	NA	NA	NA
AXY49385.1\|9669_10104_+	hypothetical protein	NA	NA	NA	NA
AXY49386.1\|10165_10909_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.0e-28	34.7
AXY49387.1\|10905_12465_-\|integrase	integrase	K4I413	Acidithiobacillus_phage	5.2e-70	35.1
AXY49388.1\|12522_12894_+	hypothetical protein	NA	NA	NA	NA
12466:12627	attR	NA	NA	NA	NA
AXY49389.1\|12975_13119_+	hypothetical protein	NA	NA	NA	NA
AXY49390.1\|13183_14908_-	DNA methylase N-4/N-6	A0A0H3UZ66	Geobacillus_virus	5.8e-06	29.1
AXY49391.1\|15004_15445_+\|transposase	transposase	NA	NA	NA	NA
AXY49392.1\|15441_16455_+\|transposase	transposase	NA	NA	NA	NA
AXY49393.1\|16467_17484_-	DNA methylase N-4/N-6	A0A2R3ZYF2	Campylobacter_phage	1.4e-15	30.1
AXY49394.1\|17498_20678_-	restriction endonuclease	NA	NA	NA	NA
AXY49395.1\|20984_21806_-	hypothetical protein	NA	NA	NA	NA
AXY49396.1\|22119_22458_-	hypothetical protein	NA	NA	NA	NA
AXY49397.1\|22659_22884_+	hypothetical protein	NA	NA	NA	NA
AXY49398.1\|23067_23292_+	hypothetical protein	NA	NA	NA	NA
AXY49399.1\|23438_25355_-	cell filamentation protein	NA	NA	NA	NA
AXY49400.1\|25351_25576_-	hypothetical protein	NA	NA	NA	NA
AXY49401.1\|25641_26199_-	replicative DNA helicase	NA	NA	NA	NA
AXY49402.1\|26195_26468_-	hypothetical protein	NA	NA	NA	NA
AXY49403.1\|26558_26723_-	hypothetical protein	NA	NA	NA	NA
AXY49404.1\|26734_28204_-	putative transcriptional regulator	A0A2P1N496	Mycobacterium_phage	2.6e-31	29.5
AXY49405.1\|28352_28820_-	hypothetical protein	NA	NA	NA	NA
AXY49406.1\|28824_29025_-	hypothetical protein	NA	NA	NA	NA
AXY49407.1\|29269_29611_-	hypothetical protein	NA	NA	NA	NA
AXY49408.1\|29607_30429_-	cobyrinic acid ac-diamide synthase	V5UP47	Mycobacterium_phage	1.4e-18	28.7
AXY49409.1\|30889_31285_-	hypothetical protein	A0A2P1CGB9	Mycobacterium_phage	6.8e-19	40.9
AXY49410.1\|31348_32290_-	hypothetical protein	NA	NA	NA	NA
AXY49411.1\|32369_32585_-	hypothetical protein	NA	NA	NA	NA
AXY49412.1\|32611_32803_-	hypothetical protein	NA	NA	NA	NA
AXY49413.1\|32837_33146_+	hypothetical protein	NA	NA	NA	NA
AXY49414.1\|33514_34378_-	Protein of unknown function DUF2637	A0A0N9RS70	Mycobacterium_phage	2.5e-13	40.0
AXY49416.1\|34544_34667_-	hypothetical protein	NA	NA	NA	NA
AXY49415.1\|34649_34925_+	hypothetical protein	NA	NA	NA	NA
AXY49417.1\|35009_35540_-	hypothetical protein	NA	NA	NA	NA
AXY49419.1\|35629_35995_-\|transposase	transposase IS6	NA	NA	NA	NA
AXY49418.1\|35983_36592_+	hypothetical protein	NA	NA	NA	NA
AXY49420.1\|37372_37498_-	hypothetical protein	NA	NA	NA	NA
AXY49421.1\|37536_37698_-	hypothetical protein	NA	NA	NA	NA
AXY49422.1\|38187_38379_+	hypothetical protein	NA	NA	NA	NA
AXY49423.1\|38469_38727_-	hypothetical protein	NA	NA	NA	NA
AXY49424.1\|38723_38996_-	hypothetical protein	NA	NA	NA	NA
AXY49425.1\|39074_40214_-	hypothetical protein	NA	NA	NA	NA
AXY49426.1\|40302_41040_+	hypothetical protein	NA	NA	NA	NA
AXY49427.1\|41055_42057_-	Mobile element protein	NA	NA	NA	NA
AXY49428.1\|42238_43351_-	alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.3e-35	29.7
AXY49429.1\|43565_43874_+\|transposase	transposase	NA	NA	NA	NA
AXY49430.1\|43883_45440_-	aldehyde dehydrogenase	NA	NA	NA	NA
AXY49431.1\|45642_46635_+	AraC family transcriptional regulator	NA	NA	NA	NA
AXY49433.1\|46685_47099_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023714

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP023712

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP023713

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection