CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP032362	Lactobacillus plantarum strain ZFM55 plasmid unnamed3, complete sequence	0 crisprs	NA	0
CP032359	Lactobacillus plantarum strain ZFM55 chromosome, complete genome	0 crisprs	csa3,DinG,cas3,DEDDh	6
CP032360	Lactobacillus plantarum strain ZFM55 plasmid unnamed1, complete sequence	0 crisprs	csa3	0
CP032361	Lactobacillus plantarum strain ZFM55 plasmid unnamed2, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

357377 : 425412

Tupanvirus(22.22%)

bacteriocin,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA95617.1\|357377_358046_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AYA95618.1\|358042_358216_-\|bacteriocin	two-peptide bacteriocin plantaricin JK subunit PlnK	NA	NA	NA	NA
AYA95619.1\|358246_358414_-\|bacteriocin	two-peptide bacteriocin plantaricin JK subunit PlnJ	NA	NA	NA	NA
AYA95620.1\|359275_359476_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AYA95621.1\|359603_359771_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
AYA95622.1\|359888_361088_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
AYA95623.1\|361118_361865_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AYA95624.1\|362218_362407_+	pirin	NA	NA	NA	NA
AYA95625.1\|362742_362889_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
AYA95626.1\|363079_364408_+	GHKL domain-containing protein	NA	NA	NA	NA
AYA95627.1\|364408_365152_+	DNA-binding response regulator	NA	NA	NA	NA
AYA95628.1\|365270_366014_+	DNA-binding response regulator	NA	NA	NA	NA
AYA95629.1\|366318_367092_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AYA95630.1\|367190_367349_-\|bacteriocin	two-peptide bacteriocin plantaricin EF subunit PlnF	NA	NA	NA	NA
AYA95631.1\|367373_367544_-\|bacteriocin	two-peptide bacteriocin plantaricin EF subunit PlnE	NA	NA	NA	NA
AYA95632.1\|367810_369961_+	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	6.1e-45	27.9
AYA95633.1\|369976_371353_+	HlyD family secretion protein	NA	NA	NA	NA
AYA95634.1\|372199_372868_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AYA95635.1\|372954_373635_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AYA95636.1\|373728_374415_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AYA95637.1\|374552_374756_+	hypothetical protein	NA	NA	NA	NA
AYA95638.1\|374850_377160_-	ATP-dependent DNA helicase	NA	NA	NA	NA
AYA95639.1\|377418_378195_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA
AYA95640.1\|378633_379650_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AYA95641.1\|380057_380768_+	GntR family transcriptional regulator	NA	NA	NA	NA
AYA95642.1\|380840_382202_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
AYA95643.1\|382208_382397_+	hypothetical protein	NA	NA	NA	NA
AYA95644.1\|382386_382809_+	DUF3284 domain-containing protein	NA	NA	NA	NA
AYA98249.1\|383031_384387_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
AYA95645.1\|384404_385841_+	glycosyl hydrolase family protein	A0A0B5JD41	Pandoravirus	9.7e-31	25.5
AYA95646.1\|385961_386858_+	ROK family protein	NA	NA	NA	NA
AYA95647.1\|387007_387754_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AYA95648.1\|387866_388880_+\|tRNA	tRNA-dihydrouridine synthase family protein	NA	NA	NA	NA
AYA95649.1\|389333_390467_+	hypothetical protein	NA	NA	NA	NA
AYA95650.1\|390471_391266_+	hypothetical protein	NA	NA	NA	NA
AYA95651.1\|391434_392352_+	Ppx/GppA family phosphatase	NA	NA	NA	NA
AYA95652.1\|392397_393672_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
AYA95653.1\|393664_394624_+	IpaB/EvcA family protein	NA	NA	NA	NA
AYA95654.1\|394645_395350_+	NAD-dependent protein deacetylase	NA	NA	NA	NA
AYA95655.1\|395349_396192_+	DUF72 domain-containing protein	NA	NA	NA	NA
AYA95656.1\|396788_397178_+	NUDIX domain-containing protein	NA	NA	NA	NA
AYA95657.1\|397499_399551_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.7e-90	35.8
AYA95658.1\|399783_400968_+	Bcr/CflA family efflux MFS transporter	NA	NA	NA	NA
AYA95659.1\|401090_401867_+	TatD family deoxyribonuclease	NA	NA	NA	NA
AYA95660.1\|401853_402417_+	ribonuclease M5	NA	NA	NA	NA
AYA95661.1\|402413_403304_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
AYA95662.1\|403408_403660_+	hypothetical protein	NA	NA	NA	NA
AYA95663.1\|403792_404659_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA
AYA95664.1\|404740_404923_-	hypothetical protein	NA	NA	NA	NA
AYA95665.1\|404968_405913_+	alpha/beta hydrolase	NA	NA	NA	NA
AYA95666.1\|406179_406878_+	ABC transporter ATP-binding protein	A0A1V0SGN0	Hokovirus	1.2e-15	27.8
AYA95667.1\|406864_407668_+	metal ABC transporter permease	NA	NA	NA	NA
AYA95668.1\|408746_409289_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
AYA95669.1\|409303_409567_+	hypothetical protein	NA	NA	NA	NA
AYA95670.1\|410059_410896_+	pur operon repressor	NA	NA	NA	NA
AYA95671.1\|410964_412347_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	A0A2K9L140	Tupanvirus	5.7e-28	33.2
AYA95672.1\|412582_413407_+	serine hydrolase	NA	NA	NA	NA
AYA95673.1\|413772_414753_+	ribose-phosphate diphosphokinase	A0A2K9L8D8	Tupanvirus	4.9e-42	36.3
AYA95674.1\|415041_416064_+	YdcF family protein	NA	NA	NA	NA
AYA95675.1\|416146_417133_+	lipoprotein	NA	NA	NA	NA
AYA95676.1\|417302_418112_-	sugar-phosphatase	NA	NA	NA	NA
AYA95677.1\|418131_419484_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	2.3e-26	33.3
AYA95678.1\|419498_420431_-	lipoate--protein ligase family protein	NA	NA	NA	NA
AYA95679.1\|420793_421234_+	DUF1934 domain-containing protein	NA	NA	NA	NA
AYA95680.1\|421278_421887_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
AYA95681.1\|422059_423673_+	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.2e-143	49.9
AYA95682.1\|424140_425412_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.4e-95	43.4

DBSCAN-SWA_2

1007091 : 1015605

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA96198.1\|1007091_1007577_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.3e-16	41.0
AYA96199.1\|1007560_1008691_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AYA96200.1\|1008693_1009425_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	1.6e-37	37.3
AYA96201.1\|1009426_1009681_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AYA96202.1\|1009680_1010361_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AYA96203.1\|1010353_1012573_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.5e-144	39.3
AYA96204.1\|1012557_1014012_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-50	34.0
AYA96205.1\|1014008_1015034_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	5.4e-60	40.7
AYA96206.1\|1015026_1015605_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-21	33.9

DBSCAN-SWA_3

1200893 : 1306085

134

Lactobacillus_phage(51.32%)

portal,tail,head,capsid,protease,terminase,holin,lysis,integrase

attL 1202230:1202289|attR 1256510:1256581

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA96369.1\|1200893_1202162_-\|integrase	site-specific integrase	A0A0P0I3D2	Lactobacillus_phage	8.2e-90	42.2
1202230:1202289	attL	NA	NA	NA	NA
AYA96370.1\|1202343_1202520_-	hypothetical protein	A0A2P0ZL93	Lactobacillus_phage	9.1e-08	53.4
AYA96371.1\|1202760_1203015_-	hypothetical protein	NA	NA	NA	NA
AYA96372.1\|1203024_1203816_-	hypothetical protein	NA	NA	NA	NA
AYA96373.1\|1203838_1204252_-	ImmA/IrrE family metallo-endopeptidase	A0A0M4RD70	Bacillus_phage	3.4e-05	31.3
AYA96374.1\|1204263_1204632_-	XRE family transcriptional regulator	E9LUL4	Lactobacillus_phage	5.7e-20	44.1
AYA96375.1\|1204781_1205018_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYA96376.1\|1205010_1205205_+	hypothetical protein	NA	NA	NA	NA
AYA96377.1\|1205268_1205784_+	transcriptional regulator	D6PST4	Lactobacillus_phage	1.7e-25	38.6
AYA96378.1\|1205796_1206042_+	hypothetical protein	NA	NA	NA	NA
AYA96379.1\|1206099_1206270_+	hypothetical protein	NA	NA	NA	NA
AYA98263.1\|1206459_1206861_+	hypothetical protein	NA	NA	NA	NA
AYA96380.1\|1206863_1207679_+	recombinase RecT	A8ATY6	Listeria_phage	7.9e-62	53.0
AYA96381.1\|1207698_1208460_+	hypothetical protein	E9LUM4	Lactobacillus_phage	3.5e-48	40.7
AYA96382.1\|1208539_1209445_+	DnaD domain protein	NA	NA	NA	NA
AYA96383.1\|1209458_1209959_+	hypothetical protein	O03915	Lactobacillus_phage	5.0e-83	88.6
AYA96384.1\|1209955_1210333_+	hypothetical protein	NA	NA	NA	NA
AYA96385.1\|1210329_1210764_+	hypothetical protein	A0A288TZS1	Enterococcus_phage	3.6e-29	48.8
AYA96386.1\|1210763_1210994_+	hypothetical protein	O03916	Lactobacillus_phage	3.5e-23	61.8
AYA96387.1\|1210996_1211128_+	hypothetical protein	O03917	Lactobacillus_phage	2.6e-15	95.3
AYA96388.1\|1211127_1211235_+	hypothetical protein	NA	NA	NA	NA
AYA96389.1\|1211453_1211765_+	hypothetical protein	A0A2P0ZLB4	Lactobacillus_phage	3.6e-47	89.3
AYA96390.1\|1212982_1213414_+	hypothetical protein	K4I239	Lactobacillus_phage	2.1e-37	60.0
AYA96391.1\|1213410_1213824_+	DUF1642 domain-containing protein	E9LUP3	Lactobacillus_phage	1.3e-36	58.7
AYA96392.1\|1213820_1213988_+	hypothetical protein	E9LUP4	Lactobacillus_phage	2.8e-14	91.5
AYA96393.1\|1214115_1214577_+	transcriptional regulator	D6PSV8	Lactobacillus_phage	6.9e-39	57.0
AYA96394.1\|1214942_1215287_+	hypothetical protein	NA	NA	NA	NA
AYA96395.1\|1215348_1215594_+	hypothetical protein	NA	NA	NA	NA
AYA96396.1\|1215590_1215854_+	hypothetical protein	A0A1S5RCN3	Lactobacillus_phage	2.4e-28	69.8
AYA96397.1\|1216461_1217751_+\|terminase	PBSX family phage terminase large subunit	G8FUZ2	Pediococcus_virus	8.3e-207	79.9
AYA98264.1\|1217777_1219316_+\|portal	phage portal protein	G8FUZ1	Pediococcus_virus	1.7e-190	66.0
AYA96398.1\|1219233_1220040_+	hypothetical protein	G8FUZ0	Pediococcus_virus	6.5e-101	66.4
AYA96399.1\|1220055_1220277_+	hypothetical protein	NA	NA	NA	NA
AYA96400.1\|1220419_1221010_+	DUF4355 domain-containing protein	Q597V6	Lactobacillus_virus	9.2e-20	45.7
AYA96401.1\|1221029_1221890_+\|capsid	phage capsid protein	K4I067	Lactobacillus_virus	1.9e-143	89.9
AYA98265.1\|1221910_1222165_+	hypothetical protein	G8FUY7	Pediococcus_virus	1.0e-15	63.5
AYA96402.1\|1222224_1222563_+	DNA packaging protein	K4I470	Lactobacillus_virus	3.3e-46	78.6
AYA96403.1\|1222559_1222838_+	hypothetical protein	G8FUY5	Pediococcus_virus	3.8e-32	75.0
AYA96404.1\|1222830_1223205_+	hypothetical protein	G8FUY4	Pediococcus_virus	4.0e-37	62.9
AYA96405.1\|1223204_1223558_+	hypothetical protein	K4I072	Lactobacillus_virus	9.6e-41	70.9
AYA96406.1\|1223577_1224366_+\|tail	phage major tail protein, TP901-1 family	Q597U9	Lactobacillus_virus	7.8e-99	92.1
AYA96407.1\|1224386_1224800_+	hypothetical protein	A0A2K9VBY8	Lactobacillus_phage	6.2e-39	59.9
AYA96408.1\|1224814_1225117_+	hypothetical protein	A0A2P0ZL20	Lactobacillus_phage	6.6e-22	53.6
AYA96409.1\|1225120_1228561_+\|tail	phage tail tape measure protein	A0A2P0ZL32	Lactobacillus_phage	8.6e-17	53.6
AYA96410.1\|1228573_1229959_+	hypothetical protein	A0A2P0ZL23	Lactobacillus_phage	1.2e-123	50.7
AYA96411.1\|1232186_1234196_+	DUF2479 domain-containing protein	A0A2P0ZKZ2	Lactobacillus_phage	2.5e-72	73.4
AYA96412.1\|1234208_1234592_+	hypothetical protein	A0A2P0ZLF7	Lactobacillus_phage	2.3e-64	92.9
AYA96413.1\|1234594_1234789_+	hypothetical protein	A0A2P0ZLG4	Lactobacillus_phage	4.2e-22	92.2
AYA96414.1\|1234788_1235073_+\|lysis	lysis protein	A0A2P0ZLE8	Lactobacillus_phage	6.6e-40	94.7
AYA96415.1\|1235072_1236143_+	LysM peptidoglycan-binding domain-containing protein	A0A2P0ZLG2	Lactobacillus_phage	3.1e-98	77.1
AYA96416.1\|1236330_1237245_-	glycosyl transferase	NA	NA	NA	NA
AYA96417.1\|1238036_1238228_+	hypothetical protein	NA	NA	NA	NA
AYA96418.1\|1238632_1240627_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.2e-32	41.3
AYA96419.1\|1240644_1242222_+	glycosyltransferase	NA	NA	NA	NA
AYA96420.1\|1242193_1243957_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.8e-96	40.9
AYA96421.1\|1244593_1244725_+	hypothetical protein	NA	NA	NA	NA
AYA96422.1\|1244896_1245040_+	hypothetical protein	NA	NA	NA	NA
AYA96423.1\|1245070_1245202_+	hypothetical protein	NA	NA	NA	NA
AYA96424.1\|1245234_1245366_+	hypothetical protein	NA	NA	NA	NA
AYA96425.1\|1245562_1245706_+	hypothetical protein	NA	NA	NA	NA
AYA96426.1\|1245737_1245869_+	hypothetical protein	NA	NA	NA	NA
AYA96427.1\|1245947_1246079_+	hypothetical protein	NA	NA	NA	NA
AYA96428.1\|1246108_1246240_+	hypothetical protein	NA	NA	NA	NA
AYA96429.1\|1246393_1249120_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
AYA96430.1\|1249219_1251196_+	hypothetical protein	NA	NA	NA	NA
AYA96431.1\|1251250_1251736_+	MarR family transcriptional regulator	NA	NA	NA	NA
AYA96432.1\|1251784_1252057_-	hypothetical protein	NA	NA	NA	NA
AYA96433.1\|1252081_1252315_-	hypothetical protein	NA	NA	NA	NA
AYA96434.1\|1252727_1252934_+	hypothetical protein	NA	NA	NA	NA
AYA96435.1\|1253285_1254407_-\|integrase	site-specific integrase	D6PSS4	Lactobacillus_phage	8.4e-46	32.1
AYA96436.1\|1254584_1255448_-	DUF3037 domain-containing protein	NA	NA	NA	NA
AYA96437.1\|1255414_1256455_-	hypothetical protein	NA	NA	NA	NA
AYA96438.1\|1257190_1257472_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
1256510:1256581	attR	NA	NA	NA	NA
AYA96439.1\|1257502_1257862_-	hypothetical protein	NA	NA	NA	NA
AYA96440.1\|1257888_1258266_-	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
AYA96441.1\|1259310_1260390_-	hypothetical protein	NA	NA	NA	NA
AYA96442.1\|1261074_1261794_-	hypothetical protein	NA	NA	NA	NA
AYA96443.1\|1261900_1262323_-	ImmA/IrrE family metallo-endopeptidase	A0A0S2SXM3	Bacillus_phage	1.1e-11	34.4
AYA96444.1\|1262337_1262841_-	XRE family transcriptional regulator	S6C481	Thermus_phage	1.7e-22	42.6
AYA98266.1\|1262986_1263241_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYA96445.1\|1263297_1263612_-	hypothetical protein	NA	NA	NA	NA
AYA96446.1\|1263649_1263886_-	XRE family transcriptional regulator	A0A0K2CNE2	Brevibacillus_phage	8.5e-09	30.7
AYA96447.1\|1264032_1264233_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYA96448.1\|1264573_1264879_+	DUF771 domain-containing protein	NA	NA	NA	NA
AYA96449.1\|1264946_1265459_+	XRE family transcriptional regulator	D6PST4	Lactobacillus_phage	2.0e-23	39.4
AYA96450.1\|1265526_1265697_+	hypothetical protein	NA	NA	NA	NA
AYA96451.1\|1265829_1266210_+	hypothetical protein	NA	NA	NA	NA
AYA96452.1\|1266212_1267100_+	recombinase RecT	E9LUM3	Lactobacillus_phage	2.0e-63	53.7
AYA96453.1\|1267023_1267884_+	hypothetical protein	A0A0P0IZH9	Lactobacillus_phage	1.3e-75	48.9
AYA96454.1\|1267962_1268871_+	DnaD domain protein	NA	NA	NA	NA
AYA96455.1\|1268867_1269155_+	hypothetical protein	NA	NA	NA	NA
AYA96456.1\|1269151_1269682_+	hypothetical protein	NA	NA	NA	NA
AYA96457.1\|1269678_1270197_+	hypothetical protein	O03915	Lactobacillus_phage	4.5e-55	69.1
AYA96458.1\|1270193_1270574_+	hypothetical protein	NA	NA	NA	NA
AYA96459.1\|1270658_1271150_+	methyltransferase domain-containing protein	O03918	Lactobacillus_phage	2.5e-87	93.1
AYA96460.1\|1271393_1271612_+	hypothetical protein	A0A2P0ZLC3	Lactobacillus_phage	2.3e-13	87.8
AYA96461.1\|1271604_1272030_+	hypothetical protein	K4I239	Lactobacillus_phage	4.2e-75	95.7
AYA96462.1\|1272032_1272413_+	hypothetical protein	NA	NA	NA	NA
AYA96463.1\|1272409_1272856_+	hypothetical protein	A0A2P0ZLB8	Lactobacillus_phage	9.7e-22	39.4
AYA96464.1\|1272970_1273138_+	hypothetical protein	E9LUP4	Lactobacillus_phage	4.1e-10	76.6
AYA96465.1\|1273264_1273726_+	transcriptional regulator	D6PSV8	Lactobacillus_phage	9.0e-39	56.3
AYA96466.1\|1273948_1274116_+	BC1881 family protein	NA	NA	NA	NA
AYA96467.1\|1274112_1274322_-	KTSC domain-containing protein	NA	NA	NA	NA
AYA96468.1\|1274612_1275389_-	hypothetical protein	NA	NA	NA	NA
AYA96469.1\|1275956_1276484_+\|terminase	terminase small subunit	O03926	Lactobacillus_phage	4.5e-58	75.7
AYA96470.1\|1276473_1277712_+\|terminase	PBSX family phage terminase large subunit	M1PG09	Streptococcus_phage	1.9e-139	61.3
AYA96471.1\|1277723_1279232_+\|portal	phage portal protein	V5US18	Oenococcus_phage	1.8e-136	52.0
AYA96472.1\|1279161_1279458_+\|protease	ribosomal-processing cysteine protease Prp	D2J003	Enterococcus_phage	1.1e-10	40.2
AYA96473.1\|1279604_1281290_+\|head	phage head morphogenesis protein	V5US81	Oenococcus_phage	6.5e-119	58.0
AYA96474.1\|1281342_1281543_+	hypothetical protein	NA	NA	NA	NA
AYA96475.1\|1281594_1281801_+	hypothetical protein	NA	NA	NA	NA
AYA96476.1\|1281973_1282651_+	DUF4355 domain-containing protein	Q6SE80	Lactobacillus_prophage	6.0e-15	32.1
AYA96477.1\|1282665_1283013_+	hypothetical protein	V5UTH9	Oenococcus_phage	4.4e-30	63.8
AYA96478.1\|1283032_1284055_+\|capsid	minor capsid protein E	V5US24	Oenococcus_phage	3.7e-117	62.5
AYA96479.1\|1284067_1284244_+	conjugal transfer protein	NA	NA	NA	NA
AYA96480.1\|1284255_1284588_+	hypothetical protein	V9QJ97	Oenococcus_phage	1.8e-12	45.3
AYA96481.1\|1284587_1284935_+	hypothetical protein	V5US85	Oenococcus_phage	3.2e-36	62.3
AYA96482.1\|1284936_1285488_+	HK97 gp10 family phage protein	V5URV0	Oenococcus_phage	2.0e-64	62.3
AYA96483.1\|1285487_1285853_+	hypothetical protein	V5UQS4	Oenococcus_phage	3.0e-29	53.4
AYA98267.1\|1285954_1286338_+\|tail	phage tail protein	V5USQ9	Oenococcus_phage	1.8e-37	58.4
AYA96484.1\|1286437_1286836_+	hypothetical protein	V9QJA0	Oenococcus_phage	3.0e-46	74.8
AYA98268.1\|1286943_1287207_+	hypothetical protein	V9QKH3	Oenococcus_phage	2.3e-23	65.4
AYA96485.1\|1287222_1293054_+\|tail	phage tail protein	V5URV5	Oenococcus_phage	6.6e-227	40.9
AYA96486.1\|1293067_1293430_+	hypothetical protein	V5UQS8	Oenococcus_phage	3.3e-44	70.3
AYA96487.1\|1293444_1298715_+	hypothetical protein	Q6SE68	Lactobacillus_prophage	3.7e-144	59.4
AYA96488.1\|1298721_1299171_+	DUF1617 family protein	A0A2P0ZLE0	Lactobacillus_phage	6.1e-24	40.5
AYA96489.1\|1299173_1299608_+	hypothetical protein	NA	NA	NA	NA
AYA98269.1\|1299786_1300902_+	LysM peptidoglycan-binding domain-containing protein	O03950	Lactobacillus_phage	1.7e-46	64.2
AYA96490.1\|1300902_1301199_+	hypothetical protein	A0A1I9KK55	Lactobacillus_phage	4.4e-39	77.6
AYA96491.1\|1301185_1301569_+\|holin	holin	A0A2H4PBB2	Lactobacillus_phage	2.9e-14	85.4
AYA96492.1\|1302509_1302668_+	cytochrome D ubiquinol oxidase	NA	NA	NA	NA
AYA96493.1\|1302664_1303516_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
AYA96494.1\|1303738_1304131_+	YxeA family protein	NA	NA	NA	NA
AYA96495.1\|1304354_1306085_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-46	27.6

DBSCAN-SWA_4

2136090 : 2148868

Lactobacillus_phage(70.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA97267.1\|2136090_2137035_-	glycosyltransferase	V5USA4	Oenococcus_phage	2.0e-72	45.5
AYA97268.1\|2137059_2137725_-	phosphatase PAP2 family protein	NA	NA	NA	NA
AYA97269.1\|2138434_2139127_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	5.3e-35	37.6
AYA97270.1\|2139110_2140487_+	sensor histidine kinase	W8CYF6	Bacillus_phage	3.4e-25	31.0
AYA97271.1\|2140644_2140782_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
AYA97272.1\|2140877_2141318_+	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	1.2e-75	97.9
AYA97273.1\|2141388_2141949_-	hypothetical protein	A0A2P0ZL75	Lactobacillus_phage	6.5e-100	98.4
AYA97274.1\|2142036_2144475_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	99.6
AYA97275.1\|2144477_2145092_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.3e-112	100.0
AYA97276.1\|2145144_2145474_+	hypothetical protein	NA	NA	NA	NA
AYA97277.1\|2145434_2146382_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.7e-178	100.0
AYA97278.1\|2146567_2147539_+	peptidase S41	A0A2P0ZL68	Lactobacillus_phage	3.5e-181	98.5
AYA97279.1\|2147629_2148868_-	hypothetical protein	A0A2P0ZL72	Lactobacillus_phage	2.4e-219	98.7

DBSCAN-SWA_5

2560612 : 2619864

Lactobacillus_phage(40.0%)

transposase,integrase,protease,tRNA

attL 2575613:2575628|attR 2631939:2631954

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA97635.1\|2560612_2561908_+\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	2.7e-56	31.0
AYA97636.1\|2562077_2562707_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
AYA97637.1\|2562815_2563289_+	MarR family transcriptional regulator	NA	NA	NA	NA
AYA97638.1\|2563564_2565454_-	FAD-binding dehydrogenase	A0A2P0ZL82	Lactobacillus_phage	5.2e-16	26.2
AYA97639.1\|2565640_2566567_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.9e-19	26.1
AYA97640.1\|2566637_2567189_-	helix-turn-helix domain-containing protein	X2CXD8	Lactobacillus_phage	4.9e-07	48.4
AYA97641.1\|2567288_2568041_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYA97642.1\|2568109_2568604_-	hypothetical protein	NA	NA	NA	NA
AYA97643.1\|2568692_2568815_-	hypothetical protein	NA	NA	NA	NA
AYA97644.1\|2569020_2572794_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
AYA97645.1\|2572908_2573439_+	histidine phosphatase family protein	NA	NA	NA	NA
AYA97646.1\|2573742_2574315_-	restriction endonuclease subunit S	NA	NA	NA	NA
AYA97647.1\|2574313_2574862_+	hypothetical protein	NA	NA	NA	NA
AYA97648.1\|2574872_2575790_-\|integrase	site-specific integrase	A8ATM2	Listeria_phage	2.7e-74	45.0
2575613:2575628	attL	NA	NA	NA	NA
AYA97649.1\|2575940_2577125_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.6e-15	25.3
AYA97650.1\|2578344_2579144_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AYA97651.1\|2579604_2582478_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
AYA97652.1\|2582700_2585235_-	M1 family peptidase	A0A0P0IY26	Acinetobacter_phage	1.2e-68	27.3
AYA97653.1\|2585416_2585989_-	alpha-L-rhamnosidase	NA	NA	NA	NA
AYA97654.1\|2586093_2586426_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
AYA97655.1\|2586787_2587798_-	DUF4767 domain-containing protein	NA	NA	NA	NA
AYA97656.1\|2587929_2588760_-	FAA hydrolase family protein	NA	NA	NA	NA
AYA97657.1\|2588933_2589374_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
AYA97658.1\|2589434_2589857_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
AYA97659.1\|2589871_2590054_-	hypothetical protein	NA	NA	NA	NA
AYA97660.1\|2590066_2590612_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
AYA97661.1\|2590623_2590878_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AYA97662.1\|2591118_2592966_-	acetyltransferase	A0A1R3Y5Q6	Salmonella_virus	4.5e-20	23.3
AYA97663.1\|2592955_2593339_-	hypothetical protein	NA	NA	NA	NA
AYA97664.1\|2593933_2594290_-	hypothetical protein	NA	NA	NA	NA
AYA97665.1\|2594356_2595424_-	DUF4767 domain-containing protein	NA	NA	NA	NA
AYA97666.1\|2595423_2596014_-	hypothetical protein	NA	NA	NA	NA
AYA97667.1\|2596048_2598760_-	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
AYA97668.1\|2598922_2599237_+	XRE family transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	3.3e-08	36.0
AYA97669.1\|2599368_2601873_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
AYA97670.1\|2602146_2603445_+	MFS transporter	NA	NA	NA	NA
AYA97671.1\|2603576_2603921_-	transcriptional regulator	NA	NA	NA	NA
AYA97672.1\|2604140_2604833_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AYA97673.1\|2605134_2608098_-	DNA helicase	NA	NA	NA	NA
AYA97674.1\|2608635_2609004_+	XRE family transcriptional regulator	E9LUL4	Lactobacillus_phage	5.9e-17	42.7
AYA97675.1\|2609237_2609606_+	hypothetical protein	NA	NA	NA	NA
AYA97676.1\|2610082_2610676_-	abortive infection protein	NA	NA	NA	NA
AYA97677.1\|2610914_2612162_+\|transposase	ISL3-like element ISP1 family transposase	NA	NA	NA	NA
AYA97678.1\|2612112_2612328_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYA97679.1\|2612492_2612834_+	XRE family transcriptional regulator	A0A059T669	Listeria_phage	6.9e-20	53.9
AYA97680.1\|2613267_2614419_+	DUF4428 domain-containing protein	O48432	Lactobacillus_phage	4.2e-16	26.3
AYA97681.1\|2614455_2615385_+	DUF4428 domain-containing protein	O48432	Lactobacillus_phage	3.1e-22	31.2
AYA97682.1\|2616624_2616810_+	hypothetical protein	NA	NA	NA	NA
AYA97683.1\|2616815_2617991_+\|integrase	integrase	A0A1X9I5C3	Streptococcus_phage	2.6e-37	30.5
AYA97684.1\|2618172_2619864_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	6.2e-93	41.5
2631939:2631954	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2825795 : 2834419

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA97857.1\|2825795_2826791_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	2.0e-51	38.5
AYA97858.1\|2826929_2827715_-	acyl-ACP thioesterase	NA	NA	NA	NA
AYA97859.1\|2827718_2828615_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	4.4e-82	55.7
AYA97860.1\|2828713_2829061_-	initiation-control protein YabA	M1PFV3	Streptococcus_phage	2.4e-12	33.3
AYA97861.1\|2829085_2830105_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.1e-32	33.5
AYA97862.1\|2830121_2830451_-	hypothetical protein	NA	NA	NA	NA
AYA97863.1\|2830447_2831113_-	thymidylate kinase	M1PSC7	Streptococcus_phage	1.4e-53	52.7
AYA97864.1\|2831510_2831762_-	DUF2508 family protein	NA	NA	NA	NA
AYA97865.1\|2831776_2832376_-	recombination protein RecR	NA	NA	NA	NA
AYA97866.1\|2832391_2832700_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
AYA97867.1\|2832721_2834419_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.0e-55	37.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032361

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27278 : 37367

Enterococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYA98400.1\|27278_29426_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	9.4e-256	60.3
AYA98384.1\|29532_30459_+	ribonucleoside-diphosphate reductase	A0A2H4P8A9	Corynebacterium_phage	5.9e-37	32.1
AYA98385.1\|30473_31424_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.2e-98	54.3
AYA98386.1\|31551_32364_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	6.3e-11	29.5
AYA98387.1\|32477_33110_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	3.6e-14	33.2
AYA98388.1\|33196_34099_+	YitT family protein	M1Q1P6	Streptococcus_phage	6.3e-52	40.3
AYA98389.1\|34206_34981_+\|transposase	IS5-like element ISLpl3 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.1e-27	53.2
AYA98390.1\|35352_36507_+	cation:proton antiporter	NA	NA	NA	NA
AYA98391.1\|36591_37367_-\|transposase	IS5-like element ISLpl3 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.1e-27	53.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032359

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP032361

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection