CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP032387	Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 chromosome, complete genome	0 crisprs	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG	9
CP032389	Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_2, complete sequence	0 crisprs	NA	0
CP032388	Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence	0 crisprs	cas14j,DEDDh	9

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

180742 : 226953

Salmonella_phage(84.91%)

head,tail,plate,holin,transposase,integrase,capsid,terminase

attL 176951:176965|attR 225009:225023

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
176951:176965	attL	NA	NA	NA	NA
AYB14547.1\|180742_181765_-\|transposase	IS110-like element ISSaen1 family transposase	NA	NA	NA	NA
AYB14548.1\|182226_183045_-	hypothetical protein	NA	NA	NA	NA
AYB14549.1\|183071_183449_-	hypothetical protein	NA	NA	NA	NA
AYB14550.1\|183841_184024_-	hypothetical protein	NA	NA	NA	NA
AYB14551.1\|184387_184609_-	DNA-binding protein	Q8HAB1	Salmonella_phage	1.2e-36	100.0
AYB14552.1\|184821_185829_+	type III secretion system effector arginine glycosyltransferase	Q8HAB2	Salmonella_phage	7.9e-197	100.0
AYB14553.1\|186113_186683_-\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	7.3e-107	100.0
AYB14554.1\|186682_188245_-\|tail	phage tail protein	Q8HAB4	Salmonella_phage	2.6e-287	100.0
AYB14555.1\|188231_188819_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
AYB14556.1\|188821_189901_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.5e-204	99.7
AYB14557.1\|189893_190307_-	hypothetical protein	Q8HAB8	Salmonella_phage	1.1e-75	100.0
AYB14558.1\|190311_190845_-\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	1.4e-96	100.0
AYB14559.1\|190837_191902_-\|plate	baseplate protein	Q8HAC0	Salmonella_phage	4.2e-188	95.1
AYB14560.1\|191898_193239_-	DNA circularization protein	A0A192Y5U9	Salmonella_phage	5.7e-251	99.6
AYB14561.1\|193272_195201_-\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.7
AYB14562.1\|195285_195612_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
AYB14563.1\|195608_195965_-\|tail	phage tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
AYB14564.1\|195964_197461_-\|tail	phage tail protein	Q8HAC5	Salmonella_phage	6.1e-278	99.8
AYB14565.1\|197450_197615_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	1.0e-24	100.0
AYB14566.1\|197618_198179_-	hypothetical protein	Q8HAC7	Salmonella_phage	8.8e-105	99.5
AYB14567.1\|198175_198688_-	hypothetical protein	Q8HAC8	Salmonella_phage	4.6e-92	100.0
AYB14568.1\|198659_199064_-\|head,tail	head-tail adaptor protein	A0A192Y6C2	Salmonella_phage	5.4e-72	99.3
AYB14569.1\|199060_199384_-\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
AYB14570.1\|199386_199587_-	hypothetical protein	Q8HAD1	Salmonella_phage	1.4e-28	100.0
AYB14571.1\|199637_200843_-\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	1.6e-223	100.0
AYB14572.1\|202725_202908_-	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
AYB14573.1\|202919_204653_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	99.8
AYB14574.1\|204649_205153_-\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	3.6e-89	100.0
AYB14575.1\|205270_205621_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	8.0e-64	97.4
AYB14576.1\|205748_206183_-	hypothetical protein	NA	NA	NA	NA
AYB14577.1\|206551_206824_-	peptidase	Q8SBD8	Shigella_phage	3.8e-29	77.6
AYB14578.1\|206708_207101_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	1.6e-57	92.3
AYB14579.1\|207084_207561_-	lysozyme	Q8SBE0	Shigella_phage	1.7e-85	96.8
AYB14580.1\|207564_207918_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.0e-50	88.7
AYB14581.1\|208049_208292_-	hypothetical protein	NA	NA	NA	NA
AYB14582.1\|208360_208549_-	hypothetical protein	NA	NA	NA	NA
AYB14583.1\|208580_209333_-	antitermination protein	A0A192Y5X6	Salmonella_phage	2.4e-134	92.0
AYB18785.1\|209346_210336_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	3.0e-188	97.0
AYB14584.1\|210343_211249_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	2.8e-161	99.0
AYB14585.1\|211220_211610_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.9e-70	100.0
AYB14586.1\|211618_212500_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.1e-170	99.3
AYB14587.1\|212496_212970_-	PerC family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	6.6e-53	93.8
AYB14588.1\|212966_213941_-	hypothetical protein	A0A1C9IHW0	Salmonella_phage	1.2e-165	98.1
AYB14589.1\|213937_214162_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AYB14590.1\|214158_215301_-	peptidase	A0A1C9IHV9	Salmonella_phage	1.6e-182	87.6
AYB14591.1\|215297_215852_-	hypothetical protein	A0A1C9II13	Salmonella_phage	5.9e-101	99.5
AYB14592.1\|215880_216105_-	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AYB14593.1\|216043_216229_-	amino acid permease	NA	NA	NA	NA
AYB14594.1\|216202_216898_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	4.6e-127	99.6
AYB14595.1\|217102_217288_+	hypothetical protein	A0A1C9II97	Salmonella_phage	1.2e-13	73.3
AYB18786.1\|217215_217467_+	hypothetical protein	NA	NA	NA	NA
AYB14596.1\|217447_217744_+	hypothetical protein	Q8SBF7	Shigella_phage	1.1e-50	98.0
AYB14597.1\|217661_217907_-	hypothetical protein	NA	NA	NA	NA
AYB14598.1\|218443_218815_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
AYB14599.1\|218872_219700_+	DUF2303 family protein	Q8HAA2	Salmonella_phage	1.0e-149	97.5
AYB14600.1\|219836_220376_+	HD family hydrolase	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AYB14601.1\|220446_221184_+	ead/Ea22-like family protein	A0A0M5M1J9	Salmonella_phage	1.8e-52	86.3
AYB14602.1\|221183_221657_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	5.0e-69	80.3
AYB14603.1\|221660_222410_+	hypothetical protein	H6WRY2	Salmonella_phage	1.1e-46	83.6
AYB14604.1\|222406_222976_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	5.8e-104	91.0
AYB14605.1\|223000_223243_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	2.1e-39	98.8
AYB14606.1\|223244_224234_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
AYB14607.1\|224525_225323_+	protein MtfA	NA	NA	NA	NA
225009:225023	attR	NA	NA	NA	NA
AYB18787.1\|225678_226953_+	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	8.2e-74	40.1

DBSCAN-SWA_2

339881 : 350388

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB14719.1\|339881_341195_-	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
AYB14720.1\|341221_342301_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
AYB14721.1\|342305_343079_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AYB14722.1\|343094_344069_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AYB14723.1\|344074_344626_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
AYB18794.1\|344626_345505_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
AYB14724.1\|345552_346452_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
AYB14725.1\|346451_347537_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AYB14726.1\|347913_348807_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AYB14727.1\|348984_350388_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5

DBSCAN-SWA_3

417585 : 426756

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB14779.1\|417585_419619_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.1e-55	26.9
AYB14780.1\|419859_420318_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	7.1e-52	71.2
AYB14781.1\|420489_421020_+	DUF1307 domain-containing protein	NA	NA	NA	NA
AYB14782.1\|421076_421544_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	8.8e-74	89.7
AYB14783.1\|421590_422310_-	DNA-binding response regulator	NA	NA	NA	NA
AYB14784.1\|422306_423992_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.4e-278	91.1
AYB14785.1\|424214_424946_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.2e-100	87.4
AYB14786.1\|425005_425113_+	protein YohO	NA	NA	NA	NA
AYB14787.1\|425093_425825_-	ABC transporter permease	NA	NA	NA	NA
AYB14788.1\|425808_426756_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_4

662953 : 668992

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB15007.1\|662953_663895_+	hypothetical protein	E7DYY8	Enterobacteria_phage	1.6e-146	87.8
AYB15008.1\|665137_665527_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	1.1e-50	85.6
AYB15009.1\|665495_665750_+	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
AYB15010.1\|665767_667690_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	8.1e-299	76.9
AYB15011.1\|668679_668823_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.7e-12	82.9
AYB15012.1\|668761_668992_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	5.4e-08	68.6

DBSCAN-SWA_5

898971 : 997870

Salmonella_phage(72.0%)

lysis,head,tail,plate,portal,transposase,integrase,capsid,tRNA

attL 981552:981567|attR 994819:994834

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB15200.1\|898971_899709_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA
AYB15201.1\|899838_901173_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
AYB18809.1\|901190_902090_-	LysR family transcriptional regulator	NA	NA	NA	NA
AYB15202.1\|902192_902780_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
AYB15203.1\|902841_903225_-	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	6.1e-33	71.8
AYB15204.1\|903543_904233_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
AYB15205.1\|904348_905386_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AYB15206.1\|905589_906009_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
AYB15207.1\|906081_906762_+	DTW domain-containing protein	NA	NA	NA	NA
AYB15208.1\|906815_909476_+	protein lysine acetyltransferase Pat	NA	NA	NA	NA
AYB15209.1\|909590_910946_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AYB15210.1\|910990_911314_+	YfiM family lipoprotein	NA	NA	NA	NA
AYB15211.1\|911310_912612_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.8e-44	30.6
AYB15212.1\|912715_913171_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
AYB15213.1\|918951_921525_-	chaperone protein ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
AYB15214.1\|921654_922386_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AYB15215.1\|922382_923363_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
AYB15216.1\|923494_924232_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AYB15217.1\|924503_924842_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AYB18810.1\|924945_924993_+	hypothetical protein	NA	NA	NA	NA
AYB15218.1\|925092_926253_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AYB15219.1\|926213_927122_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
AYB15220.1\|927179_928301_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AYB15221.1\|928310_929381_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
AYB15222.1\|929820_930339_+	YfiR family protein	NA	NA	NA	NA
AYB15223.1\|930331_931552_+	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
AYB15224.1\|931709_932057_-	50S ribosomal protein L19	NA	NA	NA	NA
AYB15225.1\|932097_932865_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AYB15226.1\|932909_933458_-	ribosome maturation factor RimM	NA	NA	NA	NA
AYB15227.1\|933476_933725_-	30S ribosomal protein S16	NA	NA	NA	NA
AYB15228.1\|933977_935339_-	signal recognition particle protein	NA	NA	NA	NA
AYB15229.1\|935504_936296_+	inner membrane protein YpjD	NA	NA	NA	NA
AYB15230.1\|936360_937602_+	DUF21 domain-containing protein	NA	NA	NA	NA
AYB15231.1\|937722_938328_+	cytoplasmic protein	NA	NA	NA	NA
AYB18811.1\|938362_938953_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AYB15232.1\|939076_939955_+	NAD(+) kinase	NA	NA	NA	NA
AYB15233.1\|940040_941702_+	DNA repair protein RecN	NA	NA	NA	NA
AYB15234.1\|941850_942189_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AYB15235.1\|942354_942645_-	RnfH family protein	NA	NA	NA	NA
AYB15236.1\|942634_943111_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AYB18812.1\|943260_943743_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AYB15237.1\|944357_955577_+	biofilm-associated protein BapA	NA	NA	NA	NA
AYB15238.1\|955641_957051_+	type I secretion protein TolC	NA	NA	NA	NA
AYB18813.1\|959230_960394_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AYB18814.1\|960945_961164_-	levansucrase regulator	Q53ZE7	Salmonella_virus	2.1e-38	100.0
AYB15239.1\|961232_962333_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	9.0e-194	98.6
AYB15240.1\|962329_962815_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
AYB15241.1\|962811_965619_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.0
AYB15242.1\|965611_965731_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
AYB15243.1\|965745_966048_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	9.4e-45	99.0
AYB15244.1\|966102_966618_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
AYB15245.1\|966627_967800_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.3e-222	99.5
AYB15246.1\|967930_968458_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
AYB15247.1\|968460_970146_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	3.5e-128	50.6
AYB15248.1\|970142_970748_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.3e-117	100.0
AYB15249.1\|970740_971649_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	7.2e-157	98.0
AYB15250.1\|971635_971995_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	3.5e-54	91.5
AYB15251.1\|971991_972570_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.8e-92	86.5
AYB15252.1\|972665_973532_+	hypothetical protein	NA	NA	NA	NA
AYB15253.1\|973558_974005_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	3.1e-60	81.1
AYB15254.1\|973997_974429_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.3e-71	93.7
AYB15255.1\|974391_974595_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	8.9e-23	73.1
AYB15256.1\|974524_974953_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.3e-47	76.1
AYB15257.1\|974949_975327_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	5.1e-16	39.2
AYB18815.1\|975328_975802_-	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
AYB15258.1\|975821_976037_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AYB15259.1\|976040_976244_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
AYB15260.1\|976243_976708_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.2e-76	89.0
AYB15261.1\|976803_977454_-	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
AYB15262.1\|977457_978516_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	4.9e-181	93.1
AYB15263.1\|978532_979366_-\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	5.9e-121	84.5
AYB15264.1\|979508_981275_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.3
AYB15265.1\|981274_982306_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	5.0e-170	87.0
981552:981567	attL	NA	NA	NA	NA
AYB15266.1\|983085_984240_-	DUF262 domain-containing protein	NA	NA	NA	NA
AYB15267.1\|984732_985539_+	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	6.2e-51	49.8
AYB15268.1\|985649_985949_+	hypothetical protein	NA	NA	NA	NA
AYB15269.1\|986017_986206_-	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-26	100.0
AYB15270.1\|986361_988758_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	93.9
AYB15271.1\|988754_989612_-	DNA adenine methylase	E5G6L8	Salmonella_phage	1.5e-164	99.6
AYB15272.1\|989608_989836_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
AYB15273.1\|989835_990069_-	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
AYB15274.1\|990136_990478_-	hypothetical protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
AYB15275.1\|990697_991156_+	hypothetical protein	NA	NA	NA	NA
AYB15276.1\|991103_991337_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
AYB15277.1\|991890_992130_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	8.8e-38	98.7
AYB15278.1\|992246_992879_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.1e-66	58.6
AYB15279.1\|992882_993908_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	9.2e-201	99.1
AYB15280.1\|994167_994761_+	hypothetical protein	NA	NA	NA	NA
AYB15281.1\|995159_995963_+	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	1.2e-62	44.7
994819:994834	attR	NA	NA	NA	NA
AYB15282.1\|996758_997870_-\|transposase	IS3-like element IS1351 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.6e-07	25.6

DBSCAN-SWA_6

3499659 : 3545296

Salmonella_phage(71.64%)

coat,lysis,tail,protease,portal,holin,integrase,terminase

attL 3499602:3499642|attR 3545590:3545630

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3499602:3499642	attL	NA	NA	NA	NA
AYB17503.1\|3499659_3500823_-\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	1.0e-219	97.1
AYB17504.1\|3500678_3501050_-	DNA-binding protein	B9UDM0	Salmonella_phage	2.1e-46	80.5
AYB18912.1\|3501052_3501397_-	hypothetical protein	A0A0P0ZB93	Stx2-converting_phage	1.1e-57	97.4
AYB17505.1\|3501474_3501786_-	hypothetical protein	A0A1I9LJL8	Stx_converting_phage	7.9e-55	99.0
AYB17506.1\|3501867_3502197_-	ASCH domain-containing protein	Q9XJG9	Enterobacteria_phage	1.0e-52	94.2
AYB17507.1\|3502141_3503224_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	6.5e-80	75.2
AYB17508.1\|3503220_3503514_-	hypothetical protein	A0A1V0E5L2	Salmonella_phage	4.2e-50	99.0
AYB17509.1\|3503898_3504480_-	Eae-like protein	A0A0N6WGF1	Salmonella_phage	5.2e-68	71.5
AYB17510.1\|3504476_3504647_-	DUF2737 family protein	I6S642	Salmonella_phage	6.1e-25	100.0
AYB17511.1\|3504657_3504951_-	DUF2856 family protein	A0A1V0E5L7	Salmonella_phage	5.5e-50	100.0
AYB17512.1\|3504966_3505515_-	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	2.1e-106	100.0
AYB17513.1\|3505523_3506030_-	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	3.8e-91	98.8
AYB17514.1\|3506030_3506738_-	recombinase	E7C9Q0	Salmonella_phage	9.7e-125	89.8
AYB17515.1\|3506746_3506935_-	hypothetical protein	C6ZR38	Salmonella_phage	1.3e-28	100.0
AYB17516.1\|3506931_3507045_-	host cell division inhibitory peptide Kil	C6ZR39	Salmonella_phage	7.8e-13	100.0
AYB17517.1\|3507037_3507178_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	2.0e-18	84.8
AYB17518.1\|3507501_3507801_-	hypothetical protein	A0A1R3Y5U4	Salmonella_virus	3.3e-50	99.0
AYB17519.1\|3507840_3508041_-	restriction endonuclease	A0A1R3Y5S4	Salmonella_virus	1.0e-31	100.0
AYB17520.1\|3508119_3508452_-	hypothetical protein	A0A1R3Y5R1	Salmonella_virus	2.2e-55	100.0
AYB17521.1\|3508815_3509025_+	fumarate hydratase FumD	I6R0R9	Salmonella_phage	5.5e-28	91.3
AYB17522.1\|3509060_3509984_-	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	1.5e-181	100.0
AYB17523.1\|3510072_3510762_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
AYB17524.1\|3510872_3511088_+	transcriptional regulator	Q76H55	Enterobacteria_phage	1.3e-32	100.0
AYB17525.1\|3511198_3511480_+	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
AYB17526.1\|3511514_3511661_+	DUF2740 domain-containing protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
AYB17527.1\|3512469_3513846_+	replicative DNA helicase	A0A192Y673	Salmonella_phage	4.8e-253	99.3
AYB17528.1\|3513901_3514360_+	recombination protein NinB	K7PKW7	Enterobacterial_phage	3.0e-79	98.6
AYB17529.1\|3514356_3515229_+	hypothetical protein	I6R0S6	Salmonella_phage	6.1e-169	93.4
AYB17530.1\|3515225_3515399_+	protein ninD	C6ZR56	Salmonella_phage	7.0e-29	93.0
AYB17531.1\|3515365_3515548_+	NinE family protein	Q716C5	Shigella_phage	1.8e-27	96.7
AYB17532.1\|3515544_3515721_+	NinF family protein	A0A0M4S6T3	Salmonella_phage	1.8e-27	96.6
AYB17533.1\|3515683_3515980_+	hypothetical protein	A0A0M3ULJ7	Salmonella_phage	7.5e-47	98.9
AYB17534.1\|3515976_3516372_+	RusA family crossover junction endodeoxyribonuclease	A0A0M4REJ2	Salmonella_phage	2.9e-70	96.9
AYB17535.1\|3516368_3516572_+	protein ninH	A0A075B8J4	Enterobacteria_phage	5.7e-30	94.0
AYB17536.1\|3516641_3517130_+	DUF1133 family protein	I6S672	Salmonella_phage	3.0e-77	87.0
AYB17537.1\|3517176_3517374_+	hypothetical protein	C6ZR63	Salmonella_phage	5.0e-23	96.2
AYB17538.1\|3517509_3517836_+\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
AYB17539.1\|3517819_3518257_+	lysozyme	Q5G8R3	Enterobacteria_phage	6.3e-74	97.9
AYB17540.1\|3518253_3518724_+\|lysis	lysis protein	H6WRZ5	Salmonella_phage	1.2e-62	87.2
AYB17541.1\|3518758_3518983_+	hypothetical protein	A0A1V0E5I0	Salmonella_phage	7.2e-26	90.3
AYB17542.1\|3518936_3519467_+	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	4.0e-91	96.6
AYB17543.1\|3519725_3519968_+	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
AYB17544.1\|3519971_3520361_+	hypothetical protein	C6ZR72	Salmonella_phage	1.5e-74	99.2
AYB17545.1\|3520360_3520765_+	Decoration protein	C6ZR73	Salmonella_phage	5.3e-67	100.0
AYB17546.1\|3520768_3521257_+	DNA-packaging protein	A8CGG1	Salmonella_phage	2.9e-88	100.0
AYB17547.1\|3521234_3522734_+\|terminase	terminase	A8CGE0	Salmonella_phage	6.9e-306	99.8
AYB17548.1\|3522733_3524911_+\|portal	portal protein	I6R968	Salmonella_phage	0.0e+00	98.3
AYB17549.1\|3524924_3525836_+	scaffolding protein	A0A1R3Y5R6	Salmonella_virus	4.9e-161	100.0
AYB17550.1\|3525835_3527128_+\|coat	coat protein	C6ZR10	Salmonella_phage	1.1e-243	99.8
AYB17551.1\|3527168_3527729_+	hypothetical protein	C6ZR11	Salmonella_phage	1.4e-102	98.9
AYB17552.1\|3527712_3528213_+	hypothetical protein	I1TEJ0	Salmonella_phage	5.5e-90	98.8
AYB17553.1\|3528172_3529591_+	hypothetical protein	I1TEJ1	Salmonella_phage	3.3e-273	98.3
AYB17554.1\|3529594_3530296_+\|tail	phage tail protein	B8K1I3	Salmonella_phage	8.8e-70	98.3
AYB17555.1\|3530295_3530751_+	DUF2824 family protein	B8K1I4	Salmonella_phage	1.4e-87	100.0
AYB17556.1\|3530753_3531443_+	DNA transfer protein	E7C9U4	Salmonella_phage	1.2e-108	99.6
AYB17557.1\|3531453_3532758_+	acyltransferase	E7C9U5	Salmonella_phage	7.8e-213	96.3
AYB17558.1\|3532757_3534671_+	DNA transfer protein	E7C9U6	Salmonella_phage	0.0e+00	100.0
AYB17559.1\|3534688_3535018_-	hypothetical protein	NA	NA	NA	NA
AYB17560.1\|3535048_3535414_+	hypothetical protein	E7C9U7	Salmonella_phage	8.1e-67	100.0
AYB18913.1\|3535427_3535607_-	hypothetical protein	B8K1I9	Salmonella_phage	2.1e-28	100.0
AYB17561.1\|3535706_3535958_-	Arc family DNA-binding protein	E7C9U8	Salmonella_phage	1.4e-38	100.0
AYB17562.1\|3536093_3538097_+	endorhamnosidase	E7C9U9	Salmonella_phage	0.0e+00	99.9
AYB17563.1\|3538155_3539613_-	hypothetical protein	E7C9N7	Salmonella_phage	1.7e-240	99.8
AYB17564.1\|3539602_3540535_-	glycosyltransferase	A8CG95	Salmonella_phage	5.5e-176	100.0
AYB17565.1\|3540531_3540894_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
AYB17566.1\|3542377_3544030_-	hypothetical protein	B9UDL6	Salmonella_phage	1.5e-83	38.0
AYB17567.1\|3544010_3544937_-	glycosyltransferase	I1TED8	Salmonella_phage	1.4e-168	96.7
AYB17568.1\|3544933_3545296_-	GtrA family protein	I1TED9	Salmonella_phage	3.9e-61	100.0
3545590:3545630	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3882754 : 3890067

Dickeya_phage(16.67%)

protease,integrase

attL 3884005:3884019|attR 3894998:3895012

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB17865.1\|3882754_3883873_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	38.9
AYB17866.1\|3883869_3885816_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	41.9
3884005:3884019	attL	NA	NA	NA	NA
AYB17867.1\|3885945_3886167_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AYB17868.1\|3886490_3886811_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AYB17869.1\|3886841_3889118_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AYB17870.1\|3889330_3889528_-	hypothetical protein	NA	NA	NA	NA
AYB17871.1\|3889689_3890067_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
3894998:3895012	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3961036 : 4021584

Salmonella_phage(54.55%)

tail,protease,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB17924.1\|3961036_3962329_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.3e-252	99.8
AYB17925.1\|3962373_3962622_-	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AYB17926.1\|3962662_3962902_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AYB17927.1\|3964066_3967255_-	DNA breaking-rejoining protein	S4TNL0	Salmonella_phage	0.0e+00	74.0
AYB17928.1\|3967964_3968369_-	transcriptional regulator	H6WRX4	Salmonella_phage	7.1e-72	99.3
AYB17929.1\|3968498_3968735_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.8e-38	100.0
AYB17930.1\|3968700_3969075_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AYB17931.1\|3969159_3970143_+	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
AYB17932.1\|3970145_3970895_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
AYB17933.1\|3970905_3971253_+	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
AYB17934.1\|3971249_3971774_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
AYB17935.1\|3971773_3972247_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	4.7e-67	79.5
AYB17936.1\|3972250_3972823_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
AYB17937.1\|3972916_3973183_+	hypothetical protein	S4TNF2	Salmonella_phage	1.5e-46	100.0
AYB17938.1\|3973338_3973578_+	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
AYB17939.1\|3973567_3973873_+	hypothetical protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
AYB17940.1\|3973912_3974515_+	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
AYB17941.1\|3974514_3974721_+	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AYB17942.1\|3974723_3975335_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
AYB17943.1\|3975331_3975478_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
AYB17944.1\|3975467_3976265_+	antitermination protein	A0A0M4S661	Salmonella_phage	4.4e-150	99.2
AYB17945.1\|3976663_3977011_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.3e-45	80.4
AYB17946.1\|3977013_3977628_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.2e-107	94.1
AYB17947.1\|3977624_3978176_+	DUF2514 domain-containing protein	NA	NA	NA	NA
AYB17948.1\|3978165_3978579_+	hypothetical protein	NA	NA	NA	NA
AYB17949.1\|3978640_3979615_+\|terminase	terminase small subunit	C5IHM0	Burkholderia_virus	1.6e-29	37.3
AYB17950.1\|3979604_3980876_+	hypothetical protein	A0A0U2JTW9	Escherichia_phage	1.1e-83	38.3
AYB17951.1\|3980875_3982306_+	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	2.6e-92	37.9
AYB17952.1\|3982277_3983153_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.5e-55	45.5
AYB17953.1\|3983153_3984728_+	NUDIX hydrolase	Q6UJ14	Burkholderia_virus	2.2e-20	48.6
AYB17954.1\|3984748_3985621_+	hypothetical protein	NA	NA	NA	NA
AYB17955.1\|3985638_3986670_+	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	2.5e-73	45.2
AYB17956.1\|3986734_3987220_+	hypothetical protein	NA	NA	NA	NA
AYB17957.1\|3987232_3987658_+	hypothetical protein	NA	NA	NA	NA
AYB18935.1\|3987675_3988086_+	hypothetical protein	NA	NA	NA	NA
AYB17958.1\|3988069_3989008_+	hypothetical protein	A0A0U2SH76	Escherichia_phage	2.9e-52	39.9
AYB17959.1\|3989012_3990407_+	hypothetical protein	A0A0U2KD19	Escherichia_phage	1.2e-70	37.0
AYB17960.1\|3990410_3990848_+	hypothetical protein	NA	NA	NA	NA
AYB17961.1\|3990847_3991435_+	hypothetical protein	NA	NA	NA	NA
AYB17962.1\|3991558_3993613_+	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	7.7e-21	36.3
AYB17963.1\|3993612_3994110_+	hypothetical protein	A0A0U2JGI7	Escherichia_phage	8.9e-24	38.0
AYB17964.1\|3994325_3994601_+	hypothetical protein	A0A0U2JGJ3	Escherichia_phage	1.6e-06	33.3
AYB17965.1\|3994600_3995653_+	hypothetical protein	NA	NA	NA	NA
AYB17966.1\|3995649_3996366_+	hypothetical protein	NA	NA	NA	NA
AYB17967.1\|3996362_3996695_+	hypothetical protein	NA	NA	NA	NA
AYB17968.1\|3996691_3997918_+	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	3.2e-147	63.6
AYB17969.1\|3997901_3998528_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
AYB17970.1\|3998524_4000234_+\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.5e-91	66.0
AYB17971.1\|4000233_4000815_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
AYB17972.1\|4000818_4001067_-\|tail	phage tail protein	A0A1B0VCD0	Salmonella_phage	2.1e-18	66.2
AYB17973.1\|4001292_4002261_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	3.3e-192	99.1
AYB17974.1\|4002908_4003535_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AYB17975.1\|4003894_4004581_-	virulence protein	NA	NA	NA	NA
AYB17976.1\|4004851_4005043_-	DinI family protein	S4TNM0	Salmonella_phage	1.8e-25	93.7
AYB17977.1\|4005469_4008082_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8
AYB17978.1\|4008289_4009300_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AYB17979.1\|4009465_4010008_+	cell division protein ZapC	NA	NA	NA	NA
AYB17980.1\|4010004_4011114_-	MOSC domain-containing protein	NA	NA	NA	NA
AYB17981.1\|4011212_4013321_+	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AYB17982.1\|4013333_4015241_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AYB17983.1\|4015255_4016509_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
AYB17984.1\|4016513_4018154_+	intermembrane transport protein PqiB	NA	NA	NA	NA
AYB17985.1\|4018150_4018714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
AYB17986.1\|4018969_4019137_+	ribosome modulation factor	NA	NA	NA	NA
AYB17987.1\|4019236_4019755_-	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AYB17988.1\|4019823_4021584_-\|protease	Lon protease family protein	NA	NA	NA	NA

DBSCAN-SWA_9

4234302 : 4310538

Enterobacteria_phage(26.09%)

lysis,tail,protease,portal,holin,integrase,terminase

attL 4235383:4235412|attR 4283156:4283185

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB18202.1\|4234302_4235382_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.5e-100	52.5
AYB18203.1\|4235356_4235635_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.8e-10	37.5
4235383:4235412	attL	NA	NA	NA	NA
AYB18946.1\|4235695_4235932_-	hypothetical protein	NA	NA	NA	NA
AYB18204.1\|4236222_4236408_-	DUF1187 family protein	NA	NA	NA	NA
AYB18205.1\|4236454_4237285_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	2.5e-103	71.6
AYB18206.1\|4237277_4239968_-	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	4.0e-118	72.8
AYB18207.1\|4240108_4240444_-	hypothetical protein	NA	NA	NA	NA
AYB18208.1\|4240519_4240726_-	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
AYB18209.1\|4240729_4241005_-	hypothetical protein	NA	NA	NA	NA
AYB18210.1\|4241353_4241620_-	hypothetical protein	NA	NA	NA	NA
AYB18211.1\|4242022_4242421_-	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
AYB18212.1\|4242519_4242774_+	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
AYB18213.1\|4242760_4243255_+	hypothetical protein	NA	NA	NA	NA
AYB18214.1\|4243301_4244300_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.1e-121	67.3
AYB18215.1\|4244292_4244754_+	replication protein	A0A0U2JGJ0	Escherichia_phage	3.5e-67	75.5
AYB18216.1\|4244766_4245162_+	DUF977 family protein	A0A088CBK9	Shigella_phage	9.8e-18	38.8
AYB18217.1\|4245448_4246579_-	GGDEF domain-containing protein	NA	NA	NA	NA
AYB18218.1\|4246975_4248955_+	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
AYB18219.1\|4248972_4249164_-	hypothetical protein	NA	NA	NA	NA
AYB18220.1\|4249586_4249892_+	hypothetical protein	NA	NA	NA	NA
AYB18221.1\|4249955_4250555_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.7e-96	82.9
AYB18222.1\|4250551_4250779_+	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
AYB18223.1\|4250908_4251598_+	antiterminator	I6PDF8	Cronobacter_phage	2.1e-60	54.9
AYB18947.1\|4251694_4252219_+	hypothetical protein	NA	NA	NA	NA
AYB18224.1\|4252592_4253042_-	hypothetical protein	NA	NA	NA	NA
AYB18225.1\|4253402_4254089_-\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
AYB18948.1\|4254364_4254694_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AYB18226.1\|4254677_4255130_+	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AYB18949.1\|4255147_4255627_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
AYB18227.1\|4255834_4256368_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	7.8e-34	48.1
AYB18228.1\|4256324_4258463_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
AYB18229.1\|4258459_4258666_+	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
AYB18950.1\|4258692_4260210_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	4.9e-174	64.7
AYB18951.1\|4260133_4262215_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
AYB18230.1\|4262305_4262629_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
AYB18231.1\|4262621_4262921_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
AYB18232.1\|4262901_4263468_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	2.1e-13	95.7
AYB18233.1\|4263464_4263866_+\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	2.0e-42	60.9
AYB18234.1\|4263877_4264627_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	4.8e-90	68.6
AYB18235.1\|4264672_4265071_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
AYB18236.1\|4265067_4265397_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
AYB18952.1\|4265476_4268464_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	2.8e-266	62.1
AYB18237.1\|4268460_4268793_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
AYB18238.1\|4268891_4269389_+	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	35.9
AYB18239.1\|4269505_4270039_-	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AYB18240.1\|4270128_4270824_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
AYB18241.1\|4270833_4271565_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.0e-113	75.6
AYB18242.1\|4271468_4272173_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-67	63.1
AYB18243.1\|4274733_4275597_+	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	9.0e-48	78.9
AYB18244.1\|4275635_4275878_+	hypothetical protein	NA	NA	NA	NA
AYB18245.1\|4275931_4278349_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	4.7e-86	62.8
AYB18246.1\|4278348_4278918_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.4e-96	90.5
AYB18247.1\|4279119_4279842_-	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
AYB18248.1\|4280321_4281122_-	hypothetical protein	NA	NA	NA	NA
AYB18249.1\|4282075_4283155_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.1e-98	52.0
AYB18250.1\|4284288_4284576_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.6e-38	93.9
4283156:4283185	attR	NA	NA	NA	NA
AYB18251.1\|4284572_4285106_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	3.2e-11	43.0
AYB18252.1\|4285362_4285530_-	lytic enzyme	NA	NA	NA	NA
AYB18253.1\|4285594_4285786_-	hypothetical protein	NA	NA	NA	NA
AYB18254.1\|4287244_4287445_-	phage virulence factor	NA	NA	NA	NA
AYB18255.1\|4287646_4287751_-\|tail	phage tail protein	NA	NA	NA	NA
AYB18256.1\|4288012_4288138_+	arsenic transporter	NA	NA	NA	NA
AYB18257.1\|4288266_4288533_+	hypothetical protein	NA	NA	NA	NA
AYB18258.1\|4289285_4289900_-	disulfide bond formation protein B	NA	NA	NA	NA
AYB18259.1\|4289909_4290068_-	hypothetical protein	NA	NA	NA	NA
AYB18953.1\|4291734_4291935_+	hypothetical protein	NA	NA	NA	NA
AYB18260.1\|4294243_4294384_-	hypothetical protein	NA	NA	NA	NA
AYB18261.1\|4294549_4294819_-	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
AYB18262.1\|4294865_4295060_+	hypothetical protein	NA	NA	NA	NA
AYB18263.1\|4295188_4295608_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYB18264.1\|4295980_4296457_-	hypothetical protein	NA	NA	NA	NA
AYB18265.1\|4296838_4297180_-	DUF1398 domain-containing protein	NA	NA	NA	NA
AYB18266.1\|4297863_4298586_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
AYB18267.1\|4298870_4299035_+	hypothetical protein	NA	NA	NA	NA
AYB18268.1\|4299258_4299909_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	7.2e-58	50.9
AYB18269.1\|4299927_4300119_-	DUF1482 family protein	NA	NA	NA	NA
AYB18270.1\|4300229_4300469_-	DUF1480 family protein	NA	NA	NA	NA
AYB18954.1\|4300583_4302023_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AYB18271.1\|4302100_4304740_-	PqiB family protein	NA	NA	NA	NA
AYB18272.1\|4304702_4305986_-	paraquat-inducible protein A	NA	NA	NA	NA
AYB18273.1\|4306027_4306612_+	GAF domain-containing protein	NA	NA	NA	NA
AYB18274.1\|4306709_4307396_+	RNA chaperone ProQ	NA	NA	NA	NA
AYB18275.1\|4307415_4309464_+\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
AYB18276.1\|4309656_4310538_+\|protease	protease HtpX	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032388

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 8545

Colwellia_phage(33.33%)

tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB18982.1\|232_514_+	hypothetical protein	NA	NA	NA	NA
AYB18983.1\|488_1163_+	thymidylate kinase	NA	NA	NA	NA
AYB19124.1\|1230_1662_+	hypothetical protein	NA	NA	NA	NA
AYB18984.1\|1646_1979_+	hypothetical protein	NA	NA	NA	NA
AYB18985.1\|1987_2488_+	hypothetical protein	I3UMJ0	Colwellia_phage	9.5e-18	38.4
AYB18986.1\|2491_3919_+	DNA cytosine methyltransferase	NA	NA	NA	NA
AYB18987.1\|3918_4575_+	hypothetical protein	NA	NA	NA	NA
AYB18988.1\|4630_5248_+\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AYB18989.1\|5248_5455_+	hypothetical protein	NA	NA	NA	NA
AYB18990.1\|5459_5759_+	ASCH domain-containing protein	A0A0K1LLW2	Caulobacter_phage	3.6e-20	55.4
AYB18991.1\|5849_6338_-	hypothetical protein	NA	NA	NA	NA
AYB18992.1\|6352_8545_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	9.9e-43	29.4

DBSCAN-SWA_2

22284 : 71955

Escherichia_phage(29.41%)

integrase,transposase

attL 17090:17110|attR 83374:83394

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
17090:17110	attL	NA	NA	NA	NA
AYB19009.1\|22284_23547_+\|transposase	IS1380 family transposase ISEc9	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AYB19010.1\|23870_25016_+	class C beta-lactamase CMY-2	NA	NA	NA	NA
AYB19011.1\|25636_26341_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYB19012.1\|26331_26514_+	hypothetical protein	NA	NA	NA	NA
AYB19013.1\|26435_26921_+	Abi family protein	A3QSC6	Clostridium_virus	6.4e-11	31.0
AYB19014.1\|27079_28207_-	hypothetical protein	J9Q803	Salmonella_phage	1.1e-26	28.7
AYB19015.1\|29284_29929_-	resolvase	A0A1V0E035	Clostridioides_phage	7.5e-07	27.8
AYB19016.1\|34278_35019_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	6.2e-05	30.3
AYB19017.1\|35073_35637_+	fertility inhibition protein FinO	NA	NA	NA	NA
AYB19018.1\|35753_36206_+	disulfide bond formation protein DsbA	NA	NA	NA	NA
AYB19019.1\|36993_37260_+	replication regulatory protein RepA	NA	NA	NA	NA
AYB19125.1\|37507_37585_+	RepA leader peptide Tap	NA	NA	NA	NA
AYB19020.1\|37565_38447_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
AYB19021.1\|38458_38674_+	hypothetical protein	NA	NA	NA	NA
AYB19022.1\|39665_39839_-	hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	1.1e-16	72.6
AYB19023.1\|40485_41280_-	hypothetical protein	NA	NA	NA	NA
AYB19126.1\|41315_41975_-	fimbrial protein	NA	NA	NA	NA
AYB19024.1\|43433_43706_+	hypothetical protein	NA	NA	NA	NA
AYB19025.1\|43941_44739_+	fimbrial protein	NA	NA	NA	NA
AYB19026.1\|44766_45531_+	fimbrial protein	NA	NA	NA	NA
AYB19027.1\|45517_45793_+	hypothetical protein	NA	NA	NA	NA
AYB19028.1\|45792_46506_+	fimbrial protein	NA	NA	NA	NA
AYB19029.1\|46630_47215_+	hypothetical protein	NA	NA	NA	NA
AYB19030.1\|47287_47500_+	faeA-like family protein	NA	NA	NA	NA
AYB19031.1\|47947_48796_+	hypothetical protein	NA	NA	NA	NA
AYB19032.1\|48870_49158_-	hypothetical protein	NA	NA	NA	NA
AYB19033.1\|49365_49794_-	PIN domain-containing protein	NA	NA	NA	NA
AYB19034.1\|49790_50021_-	virulence-associated protein vagC	NA	NA	NA	NA
AYB19035.1\|50765_50984_+	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
AYB19036.1\|50985_51291_+	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
AYB19037.1\|51292_51583_+	cytoplasmic protein	NA	NA	NA	NA
AYB19038.1\|51579_52101_+	cytoplasmic protein	NA	NA	NA	NA
AYB19039.1\|52135_52918_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.6e-51	91.1
AYB19040.1\|53642_54152_+	CaiF/GrlA family transcriptional regulator	NA	NA	NA	NA
AYB19041.1\|54693_55254_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
AYB19042.1\|55320_55680_-	Virulence protein VsdF	A0A077SLN2	Escherichia_phage	3.0e-42	76.7
AYB19043.1\|55736_56162_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.4e-24	50.4
AYB19044.1\|56288_56939_-	SPI-2 type III secretion system effector cysteine hydrolase SpvD	NA	NA	NA	NA
AYB19045.1\|57199_57925_-	type III secretion system effector phosphothreonine lyase SpvC	NA	NA	NA	NA
AYB19046.1\|58205_59987_-	SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB	NA	NA	NA	NA
AYB19047.1\|60168_60936_-	Virulence protein SpvA	NA	NA	NA	NA
AYB19048.1\|61109_61274_-	lysozyme	A0A0M4R365	Salmonella_phage	3.3e-12	63.0
AYB19049.1\|61447_62341_-	virulence genes transcriptional activator SpvR	NA	NA	NA	NA
AYB19050.1\|63490_64195_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYB19051.1\|64841_65867_+	AAA family ATPase	NA	NA	NA	NA
AYB19052.1\|66673_67378_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYB19053.1\|67530_68346_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
AYB19054.1\|68535_69240_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYB19127.1\|69275_69539_+	hypothetical protein	NA	NA	NA	NA
AYB19055.1\|69531_70068_+	hypothetical protein	NA	NA	NA	NA
AYB19056.1\|70070_71081_+\|integrase	integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
AYB19057.1\|71085_71955_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.5e-23	35.1
83374:83394	attR	NA	NA	NA	NA

DBSCAN-SWA_3

75125 : 76637

Pseudoalteromonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB19062.1\|75125_76637_+	ATP-dependent helicase	A0A2D1GN12	Pseudoalteromonas_phage	3.6e-44	30.7

DBSCAN-SWA_4

83965 : 87712

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB19067.1\|83965_84238_+	nucleotide excision repair protein	A0A2H4J3B6	uncultured_Caudovirales_phage	1.3e-08	41.0
AYB19068.1\|84237_84771_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
AYB19069.1\|84781_85390_+	transcriptional regulator	NA	NA	NA	NA
AYB19128.1\|85386_85938_+	regulator	NA	NA	NA	NA
AYB19070.1\|85997_86417_-	DNA-binding protein	NA	NA	NA	NA
AYB19071.1\|86418_86712_-	hypothetical protein	NA	NA	NA	NA
AYB19072.1\|86728_87712_-	ParM/StbA family protein	A7KUY1	Bacillus_phage	2.1e-08	24.4

DBSCAN-SWA_5

91615 : 92731

unidentified_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB19077.1\|91615_92731_-	phosphohydrolase	H7BVI4	unidentified_phage	6.4e-46	29.1

DBSCAN-SWA_6

96372 : 102227

Wolbachia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB19083.1\|96372_97350_+	S49 family peptidase	Q9JMP1	Wolbachia_phage	7.1e-17	31.5
AYB19084.1\|97365_98226_+	DsbA family protein	NA	NA	NA	NA
AYB19085.1\|98259_98688_+	hypothetical protein	NA	NA	NA	NA
AYB19086.1\|98744_99104_+	hypothetical protein	A0A076G835	Escherichia_phage	5.6e-20	49.4
AYB19087.1\|99103_99550_+	Fe3+-siderophore ABC transporter permease	NA	NA	NA	NA
AYB19088.1\|99546_100065_+	nitrite reductase	NA	NA	NA	NA
AYB19089.1\|100064_100295_+	hypothetical protein	NA	NA	NA	NA
AYB19090.1\|100281_101139_+	hypothetical protein	NA	NA	NA	NA
AYB19091.1\|101164_101353_+	hypothetical protein	NA	NA	NA	NA
AYB19092.1\|101369_101897_+	nuclease	O64020	Bacillus_phage	1.3e-09	37.0
AYB19093.1\|101954_102227_+	HU family DNA-binding protein	A3E2K9	Sodalis_phage	4.2e-20	59.6

DBSCAN-SWA_7

105856 : 108992

Escherichia_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB19102.1\|105856_106318_+	DUF1643 domain-containing protein	B5WZV8	Pseudomonas_phage	1.5e-46	60.5
AYB19103.1\|106320_106818_+	hypothetical protein	NA	NA	NA	NA
AYB19104.1\|107032_107737_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYB19105.1\|108287_108992_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_8

113197 : 114412

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB19111.1\|113197_114412_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	5.5e-19	28.7

DBSCAN-SWA_9

119246 : 122824

Pandoravirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB19118.1\|119246_120062_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
AYB19119.1\|120368_120680_+	hypothetical protein	NA	NA	NA	NA
AYB19120.1\|120853_121639_+	ParA family protein	A0A1X9IGI7	Lactococcus_phage	6.1e-11	26.4
AYB19121.1\|121642_122824_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	2.4e-11	28.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032387

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP032388

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection