CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP032427	Streptomyces griseorubiginosus strain 3E-1 chromosome, complete genome	14 crisprs	WYL,csa3,DEDDh,DinG,Cas14u_CAS-V,cas3,c2c9_V-U4,Cas9_archaeal,cas4	2	5	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP032427_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_2

994041-994138

Orphan

Consensus_repeat	Method
GTCACTCTGTGGAGGACGTGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_2

>merge|CP032427|2|994041-994138|CRISPRCasFinder
GTCACTCTGTGGAGGACGTGGCCGTCAGGCCCGTAGCGTCACTCTGTGGAGGACGTGGTCGCCAGGCCCGTAGCGTCACTCTGTGGAGGACGTGGTCG

>CP032427|2|2|994041-994138|CRISPRCasFinder
GTCACTCTGTGGAGGACGTGGCCG	TCAGGCCCGTAGCGTCACTCTGTGGAGGACGTGGTCGCCAGGCCCGTAGC
GTCACTCTGTGGAGGACGTGGTCG

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC36651.1\|1005354_1006254_+\|N-acetylmuramic-acid/N-acetylglucosamine-kinase	unknown	unknown	gnl\|CDD\|225518
CP032427.1\|AYC36648.1\|1001279_1002200_-\|sn-glycerol-3-phosphate-transport-system-permease-protein-UgpA	unknown	unknown	gnl\|CDD\|224096
CP032427.1\|AYC36639.1\|991962_992700_-\|putative-glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|213673
CP032427.1\|AYC36636.1\|987051_987990_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223469
CP032427.1\|AYC36643.1\|995297_995495_-\|Ferredoxin-1	unknown	unknown	gnl\|CDD\|224064
CP032427.1\|AYC36642.1\|994152_995301_-\|Benzene-1,2-dioxygenase-system-ferredoxin--NAD(+)-reductase-subunit	unknown	unknown	gnl\|CDD\|223523
CP032427.1\|AYC36635.1\|985945_986800_-\|Proteasome-subunit-beta	unknown	unknown	gnl\|CDD\|163402
CP032427.1\|AYC36645.1\|996840_998673_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC36632.1\|982186_983659_+\|Putrescine-importer-PuuP	unknown	unknown	gnl\|CDD\|223605
CP032427.1\|AYC36633.1\|983670_984633_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC36637.1\|987986_989474_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371751
CP032427.1\|AYC36644.1\|995507_996692_-\|Cytochrome-p450-CYP199A2	unknown	unknown	gnl\|CDD\|225035
CP032427.1\|AYC36646.1\|998686_1000378_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC36638.1\|989611_991966_-\|putative-glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|224471
CP032427.1\|AYC36649.1\|1002324_1003647_-\|Putative-binding-protein-MsmE	unknown	unknown	gnl\|CDD\|270303
CP032427.1\|AYC36650.1\|1003924_1005058_-\|Fructokinase	unknown	unknown	gnl\|CDD\|224851
CP032427.1\|AYC36641.1\|993346_993979_+\|Uridine-kinase	unknown	unknown	gnl\|CDD\|236442
CP032427.1\|AYC36647.1\|1000380_1001283_-\|L-arabinose-transport-system-permease-protein-AraQ	unknown	unknown	gnl\|CDD\|223472
CP032427.1\|AYC36640.1\|992836_993268_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226769
CP032427.1\|AYC36634.1\|984663_985818_-\|High-affinity-nickel-transport-protein	unknown	unknown	gnl\|CDD\|225911

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC36639.1\|991962_992700_-\|putative-glycosyl-hydrolase	gnl\|CDD\|213673	TIGR02009, Hypothetical_protein_Rv3400/MT3508/Mb3433., beta-phosphoglucomutase family hydrolase. This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).	1.4933e-50
CP032427.1\|AYC36636.1\|987051_987990_-\|hypothetical-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	2.23488e-10
CP032427.1\|AYC36643.1\|995297_995495_-\|Ferredoxin-1	gnl\|CDD\|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	5.96869e-10
CP032427.1\|AYC36642.1\|994152_995301_-\|Benzene-1,2-dioxygenase-system-ferredoxin--NAD(+)-reductase-subunit	gnl\|CDD\|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	1.62126e-42
CP032427.1\|AYC36635.1\|985945_986800_-\|Proteasome-subunit-beta	gnl\|CDD\|163402	TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.09784e-124
CP032427.1\|AYC36651.1\|1005354_1006254_+\|N-acetylmuramic-acid/N-acetylglucosamine-kinase	gnl\|CDD\|225518	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism].	8.93296e-24
CP032427.1\|AYC36632.1\|982186_983659_+\|Putrescine-importer-PuuP	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	6.50404e-38
CP032427.1\|AYC36634.1\|984663_985818_-\|High-affinity-nickel-transport-protein	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	3.93291e-151
CP032427.1\|AYC36637.1\|987986_989474_-\|hypothetical-protein	gnl\|CDD\|371751	pfam11833, CPP1-like, Protein CHAPERONE-LIKE PROTEIN OF POR1-like. This entry includes proteins from bacteria and eukaryotes. The plant member, CHAPERONE-LIKE PROTEIN OF POR1 (CPP1), is an essential protein for chloroplast development, plays a role in the regulation of POR (light-dependent protochlorophyllide oxidoreductase) stability and function.	0.00491948
CP032427.1\|AYC36644.1\|995507_996692_-\|Cytochrome-p450-CYP199A2	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	2.15374e-70
CP032427.1\|AYC36638.1\|989611_991966_-\|putative-glycosyl-hydrolase	gnl\|CDD\|224471	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism].	0
CP032427.1\|AYC36649.1\|1002324_1003647_-\|Putative-binding-protein-MsmE	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.85472e-51
CP032427.1\|AYC36650.1\|1003924_1005058_-\|Fructokinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.93123e-34
CP032427.1\|AYC36641.1\|993346_993979_+\|Uridine-kinase	gnl\|CDD\|236442	PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed.	2.01442e-90
CP032427.1\|AYC36647.1\|1000380_1001283_-\|L-arabinose-transport-system-permease-protein-AraQ	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.21913e-81
CP032427.1\|AYC36640.1\|992836_993268_-\|hypothetical-protein	gnl\|CDD\|226769	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown].	7.5447e-21
CP032427.1\|AYC36648.1\|1001279_1002200_-\|sn-glycerol-3-phosphate-transport-system-permease-protein-UgpA	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.42306e-85

>CP032427.1|AYC36641.1|993346_993979_+|Uridine-kinase
MPLTFDDLVIRARSLAQDDRRAVLGIAGSPGSGKTTLAERLVRALNGPAEPWVAHVPMDGFHLADVELDRLGLRDRKGAPETFDAAGYAALLRRLREEPDGAVVYAPGFERVLEQPIAGAVPVLPTARLIVTEGNYLLLWPRVRSQLDEVWFCEPDEEERLRRLIARHEEFGKTHAEAVAWVLRSDQPNAELVAATRDRADLVVPATVLV
>CP032427.1|AYC36640.1|992836_993268_-|hypothetical-protein
MPQYSYRTDAPDAGDDEAQIRALVTAWAAAVHCGDLAGVVADHAQDIVLYDVPPPHHGIRGLAAYRAHWPPFFAWQAQGACFDIETLDVTAGTDVAYAHALLRCATPEELAAHPDVRLRLTLGLRKERGRWLVAHEHHSFPHD
>CP032427.1|AYC36639.1|991962_992700_-|putative-glycosyl-hydrolase
MTDLGLPEDIKACLFDLDGVVTKTAVVHAAAWKEMFDAFLREREGEDFRPFDDHDYDQYVDGLPRADGVRTFLASRGIDLPEGSADDPPGAETVNGLGNRKNALVLEKIRTDGIEAYDDTLAYIREARARGLRTAIVSSSANCRDVLRAIDAEDLFDVRVDGVVAKERKLPGKPRPDTFLAAAEDLGLDARRSAVFEDALAGMDAGRAGGFGYVVGLDRVGQADALYEHGADIVVKGLAELGGHA
>CP032427.1|AYC36638.1|989611_991966_-|putative-glycosyl-hydrolase
MITQRSYTVEPWAVRETALNLDVLAQSESVFALSNGHVGWRGNLDEGEPHGLPGSYLNGVHELHPLPYAEAGYGYPESGQTVIDVTNGKILRLLVDDEPFDLRYGRLVSHERTLDLRRGVLERTCEWISPAGSRIRVRSTRLVSLTQRAIAAVAYEVEPVDSRTRVVIQSELVTNESLPSPNGDPRAAKALKSPLEHEEGFADGTRLRLVHRTRQSGLRVAVAADHVIDGPGRTTTSSEEMVDLARLTVTSVLEPGQRLRVEKLVAHGWSGVRSRPAMSDQVDAALAAAAHSGWDGLLDEQRGYLDDFWARADVEVDGDEEIQQAVRFALFHVLQAGARAEQRAIPAKGLTGSGYDGHAFWDTETFVLPLLTYTEPRAVAEALRWRQHTLPAARDRAVQLGLRGAAFPWRTIDGSEGSAYWPAGTAAFHVNAAVADAVVRYTEATGDLDFERDTGVELLVETARLWRSLGHHDHRGVFHIDGVTGPDEYSAVADDNTYTNLMARANLLAAAEACARHPHQAAALGVDDEESAAWRDAAEAVHIPYNDELGVHEQHAGFTRHQQWDFAGTRADQYPLMLHFPYFDLYRKQVVKQADLVLAMYLCSNWFEEFHDEEQIARNFAYYEPLTVRDSSLSACVQAVVAARAGHLSLAYAYTAEAALMDLADLENNTRDGLHIASLAGTWTALVAGFGGLRRDGASLRFAPRLPERFSRLAFNLRLLDRCLRVEIGPDKATYTLVSGAPLTISHHGTPLTLNGDGPVVRPVPAPRDRPAPDQPPHRAPHAR
>CP032427.1|AYC36637.1|987986_989474_-|hypothetical-protein
MAHGDSALLDGARRRTEPDPPGTSLRDRGQWLIAAVAAAFTLAQLLLVRPGMGLGWDETVYVSQVGTQAPAAFFSAPRARGVSLLVAPIASWSTSTELLRVYLAVLSGLALYLALRTWRGLFPGRVLAVGGALFASLWITVFYGPQAMPNYWVAVGALGTVGCFLRARENPRALWGVVAGAALMAWMRPTDAVWTTLPLFVAAAVTRRPRPAVALVAGLVLGGVQWVIEAYTSYGGLAERLHEGSRIQGGLGPQFAVVDQLRSLGGRALCRPCTGPLPHPAIMTWWAVLPLLAAVGLVVAVRAGRTARTLVPLACATTAAVPYLFLIGYAAPRFLLPAYLLMAIPVADALFHLATTPAGRWRPVAATVLAIGLAGHLAVQYAVLERTVRRTTDSHQDWADTAAELHRLGVRPPCVLTGYLSVPVAYYAGCHSAAAFGPNTNSTESKILGASRRMPVAVLTEHGAEPPAYARDWPTRPAAGMDLHIAPSQSERGPT
>CP032427.1|AYC36636.1|987051_987990_-|hypothetical-protein
MTADQVTAPGRRRVYGQLALTLAVLTATGYLARSHWSALETGALRLALADPGWLLVAATAAAVTWMCSALAQQGAVLRTLPARRLVAAQFAAGAAGQLVPAGLGSGAVNLRFLMRCGMSAGRSATALAVKATAGGLVRAALIAVLATACPGVLGLPRPYAGWLVAAGAGAAIAGLLTAVLWPRCRGALALVLADIRAVHARPCRALALWGGSLGFAVLHAVVLIAVTRAVALPLAPPLVALLYLTASSAAALLPTPGGLGSLDAALALALTAGGAPGVAAASAVLGYRLLTVWLPLLPGLVVLALLVRRKAL
>CP032427.1|AYC36635.1|985945_986800_-|Proteasome-subunit-beta
MTGNEHGGRLGEEFFTPGSSSFTEFLAAHRPELLSTRRILPDGVRAAPDQVPHGTTVLALSFRDGVLIAGDRRATMGNLIAQRDLEKVHPADDHTAVAFAGTVGLALDMVKLYQVELAHFEKIEGVAMTLDGKARRLAGMIRQNLGQAMQGLAVVPLLVGYDPARTAGERGRIFSFDIAGGLYEKAGFHAEGSGSPYARGALKKLFRKGLDRREAALTALQALYDAADDDSATGGPDISRQIFPIVSVITEDGFERLPETETAALSREMVEQRRSRPDGPNATP
>CP032427.1|AYC36634.1|984663_985818_-|High-affinity-nickel-transport-protein
MTAAPDSAPPLLPATAPARGSVWHRVRHSMTRQEWARAGGMAAVVVALHVIGWVTLVAIVAPHHYSVGEKSFGVGIGVTAYTLGMRHAFDADHIAAIDNTTRKLMGEGQRPLSVGFWFSLGHSSVVFVLALLLSLGVKALAGPVRDGDSRLHDVTGLIGTTVSGAFLYLIAAVNLVVLVGIWKVFRRMRSGHYDEAALEEQLNSRGFMNRLLGRVMRSITRPWQMYPLGLLFGLGFDTATEIALLVLAGSGAASGLPWYAILTLPVLFAAGMSLLDTIDGSFMNFAYGWAFSKPVRKVYYNLTVTGLSVAVALLIGTVELLGLLADKLNLQGPFWTWIAGLDLNLLGFVIVGLFFATWIVALVVWKLGRIEEKWTAGLAEQPAD
>CP032427.1|AYC36633.1|983670_984633_+|hypothetical-protein
MARDRFTPEFDPDCGDVPLTTARQDIVIGRWQGLRELLRATGPDWLARGHRVRTLAQACAGSSTVESWLAAEPHNGDALVLRAATETARAFNLAIAAGRGVPIDQRRIDAAVMACLQASEAFVDDPTPWISLISVARLYPAGVRRQELGRWWDELHARDPYSVEGHLQVLHYYSSRWHGSNGLMYDFARDAAGVAPPGSALPVLVQYARVEEYRAAVDAADGDRKASVGLGQHWKHDGAVSDVRRTWQRWIVGRSDPTVHPGELRDLNYLAHAACLAGLAEVAVPLLRMLDRRGTRTPWSYTGEAEQQFTKWRKEFKVRT
>CP032427.1|AYC36632.1|982186_983659_+|Putrescine-importer-PuuP
MSINRGRGLQANALGTFDTVVMAVAGSAPAYSIAATTAVLVGAVGLASPAALLYCAIPMLGIALAFSYLSRIDVNAGASYSWVGRTLHPFLGFVSGWALVISATIFMVAGSLPAGSMTLSLFDQGLADNTALSTVVGAAWFVLMLLVVLGGARLTVRAQLIMSGVELAILALFAVLALFHTGGAHAFDWSWLGFSHFDGMQGFASGALIAAFYYWGWDVTSNLSEETRNSRRTTGLAGLIGVGIVFLLFEVFTIAVNVILTSKQIDDNDANVLAVLGDEVLPGWGGKLLIVAVMLSTIATLETTLIQVTRSLFAMGRDRTMPSALGRVHRRWNTPWVAIVVVGAVALAMFIASNALGSVGDILSDAISAIGLQIAVYYGLTGLAVVVAYRKMLLKSPTDFLLGGLWPLLGALFMFWIFVESLGDLSTAAISIGVGGLAVGLVPMLWYWRKGSDYYRPARLDASRTVATDWVPDGAAAGPSLVHEGLPTDF
>CP032427.1|AYC36642.1|994152_995301_-|Benzene-1,2-dioxygenase-system-ferredoxin--NAD(+)-reductase-subunit
MTAARSVLVVGESLAGTTAVRHLRALGHAGPLTLVGAEEQGAYSRPPLSKVVLKDPSADETLGLALDGLDVDVIRSPAVAADTDRRTVTTADGRIGYDALIVATGADARRLAAPGQRGELVLRTLEDARRLRARLADATSAIVVGAGFLGMEVASACAARGIPVTVVDTDRPLERVLGAYLSAEITARAATHGIRFLQASGFATLTGDPVRGVALPDGTELTADLVVTCAGEVPCVDWLEGTGLAGRLGVGIDHACATTVPGVFAAGDVTYLRAQGTQPDRRAPFWSNAVAQGRAAAASALGLPLPGPAHDDYFWTEVTGLSVKVVGRLPLLGEPTAVQGSVADGRALLTWNHADGTSTAVAYGLRKPVAALRALAATSSSD
>CP032427.1|AYC36643.1|995297_995495_-|Ferredoxin-1
MKISVDYPRCEGHGLCADQAPDVFSLDDDAELTYRFEGTVVPDESRPAARAAVNACPVAALRVLT
>CP032427.1|AYC36644.1|995507_996692_-|Cytochrome-p450-CYP199A2
MPLRTDIPVYRPDLYSASAIRDTYPHYAALRELGPVVWLSKHKVYALPRYAECRQVLLDDDTFASSGGVGLNPVANRVGQGTTLFSDGEDHARRRSLLAHRLTPRALRTMKDTVDQQAAAVAEDAVARRTVDAVEVATALPMSVVPDLVGWPQQGREHLLRWAGATFDALGPLNCQAARTLPASLGMMRYARAVVRDRSALDGSMGHDLLLAADEGRIMPAECATMMIDYLAPSLDTTISAISSALYLFALHPEQWRLLKADPDLVPKAVNEVVRHQSPIRAFSRTATRDTELAGTAIPKGSRLLVLYGSANRDPLEWDDPDTFDIRRDAARQLGFGQGTHGCAGQGLARMETSAILRALVERVDRIEMTGPPEWALNNVIHRLERLPLELIPA
>CP032427.1|AYC36645.1|996840_998673_-|hypothetical-protein
MHLPRQLAPLHDLPDTPEAYDAVLADVTEQALARLTPEGNLEHPDCDDDIGDTSLGITSLLAHAWQRGKDPRLPEAVARSLAFHLRERVYTDDNPGYPNLRVRNSGLPYARYTLAAGAHPIGDWPSTVWALLQAVNLLDAADGLVDDAQRAELLDVARGYWRWLTEATFFNPQEAGNQAIGCVVGGLMLAAHLPGAEGESVRARALRLYTDEIHAHRVTDRGAALPPEHGGAYDNNYGPISLSFLAQAHRVSGEEIFAEDGDTLARYIDARLTGGGFDNGGPRYSEQHSAFESVLGLRYFGARIGADLGRYRADSRWARHAVKEDGGVDGHFAWMLVWQSQDTSRWHREPSLAIARHQLRAGTVSVAFDSRMTPAVVEAAGTYYLPAAVNRQHGFGPVVDGFLLCRPMGEVRVRDVRSDGLTAKLVTKPVVGRDHVLRHVQSLYVTDGTSLWTTVTVERLPGTPYLLAGLPYAEDDGDRVRRTAEGEVTSVGALRLTHPSGEGVDHFDARTETTQELAAFALAEDPRGYGNPDEGWRHLVSSTALEADPAPEAPDDLHAFAVRYGPGAPLTATFTRDGAGLTIRTEAFTAQLGEVAGDAHGEPELTLSAG
>CP032427.1|AYC36646.1|998686_1000378_-|hypothetical-protein
MPFPLDHEFVRAAALAADGSSDPSAEFIEPHRALARRVKTLVAAYRSPESALHGSERAVAAALTHLRALRSVQTASGLFAGGDNVQSPPDSAFTVNDVCDAYVLAAAAGPDMADVTAALAEIAGAATESLLTGGVHTPNHRWELSAALARLHRSFPDDRLLARAEVWLAEGVDIDAEGLYSERSAVYASIVTIPALLLLAEVLGRPDLVDAVERNLTATLDLIRPDGTVETVHSRRQDQKQSFALWPYLPHYRLLAIRTGRGDFARAARLAAADGIHDPDLLAQILLTPDLARPLPAPDPEELPRDRYLPTARLAAHASATAHTVVYGGSDVPEHRRIRSGLACNPTFLRLFAGAAVLDAVRLSRGFFDLGPFRAAGMERLADHRYRLTQTLTSAYYQPLPKDRRLDDGAYRLVDEGRFSAAMAFPDRPQDEISHTTRVEVDLRDDGADLRIDISGPPVPWALELTFRPGGEPQGAVPLGDGRWCMTTEPLTYRVGDDEIRVEAAVETGEPLVGPDRSDVLSYDPGQDYTVAGGTDATTGNRVYLGGHGPQTLTLALRAGSPA
>CP032427.1|AYC36647.1|1000380_1001283_-|L-arabinose-transport-system-permease-protein-AraQ
MTTTDIPRPADVGSGRSVSRKRPRKTATGGLRQAVSATTLLWIMACLYGFPVLWFVLSSFKPSSDLFSYPLTLVPHNPTLSGFKAAWDSANFSQYFINTALVCVITTILTVGVSCCTGYALAKYDNKWLKAFFICILATTMLPGEVMLAPEFLVVRNLGLYNSFAGIILPAVLTATGCFMFRQFFLTVPDELVEAARIDGARELAIFARIMVPLSRPIMLTLAILSFQWRWNDYIWPLLMLNDPNKFTVQIGIQSIVGAQNINWSVLLGASVISMIPLIAIFLVFQKYVMGADINAGLKD
>CP032427.1|AYC36648.1|1001279_1002200_-|sn-glycerol-3-phosphate-transport-system-permease-protein-UgpA
MTKRASDVSVSPPSRPSRRSKYTLAPLVLIAANVVLFALFFVWPAVIGLIYSFTNYTGVGVFQWVGLDNYQNLFGDSTFYDALTRTLLYTVLFVPLNFVVSLLAANLVVSKHAKGGSVARVIFFIPWLLSPIVVGVLWRWMFGENFGLVNYVIEKFGGDAVPWQSNADLSLLVVVMAAAWAWTGFTMLLFIAAIKNVPVSYYEAASLDGAGPWRQFFSITLPSIAPTSFIVILLNTINSMKEYPVFVALNNGGPGTSNNLLVQYIYETGFKRGQIGYASAASFVLMLILMAVAIIQLIVNRRVENR
>CP032427.1|AYC36649.1|1002324_1003647_-|Putative-binding-protein-MsmE
MTTVGVRRSRRLGRGGTRRLVSLAAAVSAGALTLTACGGDGGSGGTSKSLTFWISTVPGQDAGWKKVVADYKKEAGVSIKLVNIPYDGYTTKLHNAAQANSLPDVAAVPALDPIWSSKLIDLKSIADNKSNNINQNFLAKDSSGKVLSIPSDVTASGLFINKSLFEKAGVSFPTDPAKTWTWTDFIAAANKVREKTGVKYSLTFDQSPSRLRAMVYEMGGKYVHADDSGKFSVDAATKKAVNTFVGWNDDKTMPKSVWTSGADPSAMFQSGDVVAYWSGVWQVAAFADSIKKFEWASVPTPAQPVQASDVNSGGMVVGFNNNGDASKAATKFLSWLYEPAHYKVLCETSGFLPVESGLNPAYPFKSDAAQAAFKLYNQEIPLYAPISGYFNNAQTEWVLKGKSLTEDPTKTELGKAINGQQSADKALENIVAGYNQQVGG
>CP032427.1|AYC36650.1|1003924_1005058_-|Fructokinase
MEHDVARAPRLTESANAVFAVLAQAGTATRPQLASLARLSKPTVSSAVAELEGVHLAAHSGTSSGATGRSAAVYRLGPAAGAVLAVDLGPALTRVRGCALDGTLLAEATGPREDAADVVREALSALPPDAPLRTIVVAVGDVTAPQRLRPATAKAGPVFDAVTVALPPGVPVHLENNVNCAALAELHEGAARGRHTFGYLRIGVGIGLGIVVGGQVLAGANGAAGELARLPYPWDDDLEPRHEALEEYIGAHSLLRRAAEAWPESDGPCPRTAEQLFALAGEGVDTARAIVDRHAVDVGRLAAAVTAVLDPGLLVLGGSTGAFPQLLPGVRAELERLSWPTEVVSSQVGDLGTVVGAARLAVARGVQTVTQPVRTKD
>CP032427.1|AYC36651.1|1005354_1006254_+|N-acetylmuramic-acid/N-acetylglucosamine-kinase
MQDTAPLVVGIDVGGTKTQLRAYAGDTLVADHIRSSGGWRPHDPVAAAGWLAALAAEALPAGVRPSALAVGGHACETPRQCAQIRTALQLHFDAPALVVGDAELLVPAAGVEKGVGLVAGTGSVAVGRFADGTPVQVGGWGALLGDEGGAAGLVREAVRAVWAAHDRGEEPDALAHGLLAGFDVPEVPALGAALEHVTAASAEWGRHAPAVFAAAEAGSPLARTVIKEAGQALAALVARLAARGVVVDDVVVAGSTVLAQPPLYDAFVSALAESVPTARPRPLRAPPVEGAVAMARSLV

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Crispr_ID: CP032427_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_3

1114050-1114137

Orphan

Consensus_repeat	Method
CACGGCCCCGGCCGCCGCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_3

>merge|CP032427|3|1114050-1114137|CRISPRCasFinder
CACGGCCCCGGCCGCCGCAGGCAAGCGCACGCGACCTCGGCGACAGGCAAGCGCACCCGCTCCCCCACGGCCCCGGTCGCCGCAGGCA

>CP032427|3|3|1114050-1114137|CRISPRCasFinder
CACGGCCCCGGCCGCCGCAGGCA	AGCGCACGCGACCTCGGCGACAGGCAAGCGCACCCGCTCCCC
CACGGCCCCGGTCGCCGCAGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC36741.1\|1105989_1106961_-\|General-stress-protein-69	unknown	unknown	gnl\|CDD\|381305
CP032427.1\|AYC36749.1\|1112285_1113305_+\|Glutathionyl-hydroquinone-reductase-YqjG	unknown	unknown	gnl\|CDD\|223512
CP032427.1\|AYC36742.1\|1107019_1107583_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376786
CP032427.1\|AYC36752.1\|1114680_1115148_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132706
CP032427.1\|AYC36746.1\|1109902_1110553_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224198
CP032427.1\|AYC36743.1\|1107592_1108051_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377770
CP032427.1\|AYC36756.1\|1116734_1117688_-\|HTH-type-transcriptional-regulator-CdhR	unknown	unknown	gnl\|CDD\|181818
CP032427.1\|AYC36751.1\|1114211_1114604_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380093
CP032427.1\|AYC36750.1\|1113361_1113664_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379422
CP032427.1\|AYC36753.1\|1115174_1115705_-\|dTDP-fucosamine-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP032427.1\|AYC36748.1\|1111220_1112141_-\|Zinc-transporter-ZitB	unknown	unknown	gnl\|CDD\|273544
CP032427.1\|AYC36754.1\|1115799_1116162_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377753
CP032427.1\|AYC36744.1\|1108191_1108392_-\|Ferredoxin-1	unknown	unknown	gnl\|CDD\|379198
CP032427.1\|AYC36755.1\|1116158_1116722_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224228
CP032427.1\|AYC36759.1\|1119924_1121379_-\|NAD/NADP-dependent-betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|365919
CP032427.1\|AYC36758.1\|1118732_1119839_-\|Aryl-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176239
CP032427.1\|AYC36745.1\|1108404_1109604_-\|Pentalenic-acid-synthase	unknown	unknown	gnl\|CDD\|225035
CP032427.1\|AYC36760.1\|1121482_1121920_+\|putative-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP032427.1\|AYC36747.1\|1110655_1111105_+\|F420H(2)-dependent-quinone-reductase	unknown	unknown	gnl\|CDD\|281995
CP032427.1\|AYC36757.1\|1117759_1118710_+\|2-haloacrylate-reductase	unknown	unknown	gnl\|CDD\|176191

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC36741.1\|1105989_1106961_-\|General-stress-protein-69	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	0
CP032427.1\|AYC36749.1\|1112285_1113305_+\|Glutathionyl-hydroquinone-reductase-YqjG	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	4.69377e-135
CP032427.1\|AYC36742.1\|1107019_1107583_-\|hypothetical-protein	gnl\|CDD\|376786	pfam02441, Flavoprotein, Flavoprotein. This family contains diverse flavoprotein enzymes. This family includes epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance. dipicolinate synthase catalyzes the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenyl-acrylic acid decarboxylase (EC:4.1.1.-).	3.26021e-10
CP032427.1\|AYC36752.1\|1114680_1115148_-\|hypothetical-protein	gnl\|CDD\|132706	TIGR03667, Rv3369, PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN. [Unknown function, Enzymes of unknown specificity].	4.1837e-07
CP032427.1\|AYC36746.1\|1109902_1110553_+\|hypothetical-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	3.67448e-07
CP032427.1\|AYC36743.1\|1107592_1108051_-\|hypothetical-protein	gnl\|CDD\|377770	pfam07080, DUF1348, Protein of unknown function (DUF1348). This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.	4.81889e-90
CP032427.1\|AYC36756.1\|1116734_1117688_-\|HTH-type-transcriptional-regulator-CdhR	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	2.09032e-107
CP032427.1\|AYC36751.1\|1114211_1114604_-\|hypothetical-protein	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	5.76602e-15
CP032427.1\|AYC36750.1\|1113361_1113664_+\|hypothetical-protein	gnl\|CDD\|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	6.4017e-20
CP032427.1\|AYC36753.1\|1115174_1115705_-\|dTDP-fucosamine-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.72335e-14
CP032427.1\|AYC36748.1\|1111220_1112141_-\|Zinc-transporter-ZitB	gnl\|CDD\|273544	TIGR01297, Zinc_transporter, cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence. [Transport and binding proteins, Cations and iron carrying compounds].	3.82118e-59
CP032427.1\|AYC36754.1\|1115799_1116162_+\|hypothetical-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	3.28934e-35
CP032427.1\|AYC36744.1\|1108191_1108392_-\|Ferredoxin-1	gnl\|CDD\|379198	pfam13459, Fer4_15, 4Fe-4S single cluster domain.	3.15179e-11
CP032427.1\|AYC36755.1\|1116158_1116722_+\|hypothetical-protein	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.67624e-05
CP032427.1\|AYC36759.1\|1119924_1121379_-\|NAD/NADP-dependent-betaine-aldehyde-dehydrogenase	gnl\|CDD\|365919	pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin, an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity.	0
CP032427.1\|AYC36758.1\|1118732_1119839_-\|Aryl-alcohol-dehydrogenase	gnl\|CDD\|176239	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
CP032427.1\|AYC36745.1\|1108404_1109604_-\|Pentalenic-acid-synthase	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	6.0108e-76
CP032427.1\|AYC36760.1\|1121482_1121920_+\|putative-HTH-type-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.63337e-20
CP032427.1\|AYC36747.1\|1110655_1111105_+\|F420H(2)-dependent-quinone-reductase	gnl\|CDD\|281995	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase. This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.	4.32315e-54
CP032427.1\|AYC36757.1\|1117759_1118710_+\|2-haloacrylate-reductase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	6.11223e-128

>CP032427.1|AYC36750.1|1113361_1113664_+|hypothetical-protein
MAKKKKLKLPLAYQPLGFALGWSSGWLAGLAFRKTWMAIRHEEDAPDALDRDRGWGEILLAAAIQGAIFAAVRSAVDRTGAKAIERSTGVWPASEKGGRD
>CP032427.1|AYC36749.1|1112285_1113305_+|Glutathionyl-hydroquinone-reductase-YqjG
MDTAGDGNSAYGHKAFKRSKSHFADRVTADARDGWPVEAGRYRLVVSRACPWASRAVISRRLLGLEDALSMGIADPIQDDRSWRFTLDPDGRDPVLGIRYLSEAYDKRESDYPGGVSVPALVDIPSGKLVTNDYQQLTLDLATEWTALHREGAPDLYPRALRDEIDTVMADVYEDVNNGVYRAGFAADQEEYEEACAGVFRRLELLTPRLARQRYLVGDTITEADIRLFTTLVRFDAVYHGHFKCNRWKLTENEVLWAYVRDLYQTPGFGDTVDFDHIKRHYYQVHSGINPTGIVPLGPDLSGWLTPHHRAELGGRPFGDGTPPGPPPAAEQVPARGRP
>CP032427.1|AYC36748.1|1111220_1112141_-|Zinc-transporter-ZitB
MLVALAANLVIAVAKAVGGILAGSPALLSEAAHSVADSLNEVFLLAALHRSRRPADRRHPFGYGKERFFWSLIAAVGIFVMGGCFSVFQGVEALRNGAEEKFSGYVAGLIVLGVAFLAEGISLLRALHQVHKQGGAAQGMRDPALRTVVAEDGTAVLGVTLAMVGMALHMVTGQVVWEASASLAIGVLLVYVAYRLGREAKGQLIGEAADPEASARIRELLDAQPEIDSVEALFTMKMGLDSVLVAARVDLVPGLDSERVEEVAVRIKRSVARIVTEADQIFLDVTDRPAEEARESPAATGERGGA
>CP032427.1|AYC36747.1|1110655_1111105_+|F420H(2)-dependent-quinone-reductase
MPLDGKYEPSPTQWVRDQVELYESSGGTEGTTLLDTGLPVIVLTTRGAKSGSIRKTPLMRVEHDGRYAVVASQGGAPKHPVWYHNIKAEPLVELQDGPVKRDFKAREITGAERDEWWDRAVAAYPPYAEYQTKTDRVIPVFVLEPVDEG
>CP032427.1|AYC36746.1|1109902_1110553_+|hypothetical-protein
MGTYASALVTAALVAGLLAGYGIAVPVGAVATYLVSLTARTSLRTGVCAALGVATADGLYALVATVGGSAVAALLRPVLDPLRWAAALVLVVLAARGAVTAVREYRARHLATRTTPPPPGPGRAYLGLLGITLLNPTTVIYFAALVLGTRAEEAVRPLEQGVFVLAAFVASASWQLLLAGGGALLGRTLTGHRGRLVTALVSSAVITALAVRMVLL
>CP032427.1|AYC36745.1|1108404_1109604_-|Pentalenic-acid-synthase
MTETEPVAFPQDRTCPYHPPTGYDPLRAARPLSRITLFDGRQAWLVTGHDTARTLLADPRLSTDRTRDGFPAPTARFAGLRKRRTALLGVDDPEHRVQRRMMVPGFTLRRATALRPRIQEIVDERIDAMIAQGPPAELVTAFALPVPSTVICALLGVPYVDHDFFEGQSRRLLRGPAAEDVMDARDQLEEYIDELIDHKQKRPEPGDGVLDELVHGQLRNGELTRQDVIALAIILLVAGHETTANMISLGTFTLLQHLDRLAELRTDPALVPAAVEELMRMLSIADGLLRMALEDIEVAGTTIRAGEGVLVSTSVVNRDEAVYADPDTLDWHRPARHHLGFGFGIHQCLGQNLARAELEIALGTLFDRLPTLRLAAPAEEIPFKPGDTIQGMLELPVTW
>CP032427.1|AYC36744.1|1108191_1108392_-|Ferredoxin-1
MHIDIDKDVCIGAGQCALAAPAVFTQDDDGYSTLLPDRADGGADPMAREAARACPVAAITVSGTAG
>CP032427.1|AYC36743.1|1107592_1108051_-|hypothetical-protein
MTDRSPLPPFTGETAAQKVQAAEDAWNTRDPQRVALAYSEDSVWRNRGTFVTGRAEIVEFLTAKWAREREYALRKDLWAYDGNRIAVRFQYECRDAEVQWWRSYGNELWEFDEHGLMTRREASINDVPIEEAQRRIHGPRPETERGLSFPLQ
>CP032427.1|AYC36742.1|1107019_1107583_-|hypothetical-protein
MTEQDEIPPFLYVVVCAAGIAAGVGKLITAAQEREWQVGVIATPTAMDGFFDTAAVEAQTGYPIRSAWRRPGEPRPFPEPDAVVVAPATFNTVNKWAAGIADTLAVGTLCEVTGRGVPIGVLTCVSDDLAAHPAYQDSLIRLRGMGVRFGYPYQGAEGEEFAWERALDLVEQHRPRHGPGSAAGRGT
>CP032427.1|AYC36741.1|1105989_1106961_-|General-stress-protein-69
MQYVKLGSTGLDVSRICLGCMSYGLPDRGVHEWTLDEEASRPLIRQALDAGINFFDTANVYSDGTSEEIVGKALADFANRDEIVLATKVNGRMRSGQNAAGLSRKAIMTEIDHSLRRLGTDYVDLYQIHRFDPHTPVEETMEALHDLVKAGKVRYLGASSMFAWQFSKMQYTAERHGWTKFVSMQNHYNLLYREEEREMLPLCADQKVSALPWSPLARGRLTRDWGTVTDRSATDNFGSRLYQEGDRSIVEAVTRIAGDRDVPRAHVALAWLLAQDTVAAPIVGAGKPHHIEDAVAAVDLELSDKEIEELEAPYTARPVVGHS
>CP032427.1|AYC36751.1|1114211_1114604_-|hypothetical-protein
MALVKAGFVVLDCAEPEKLAVFYKELLEAEETDATANRVEIRGADGFRLAFRRDVNATPPSWPRPENSLQAHIDFVVHDLDEAERKVVELGGRPLDTKDAAGPFEERGYADPAGHSFTLRLITPTAPKQG
>CP032427.1|AYC36752.1|1114680_1115148_-|hypothetical-protein
MTPQPARSAEQRKKDTLHRLEHDEDVWVATAPDDGSGVPYLVPLSFLWDGSTLLLATPADSPTGRNLRTTGRVRLGLGPTRDVTMIEGTVVTVTQAELGEEEGDRFAAGTGFDPRGLTTPYLYFRITPQRVQAWREVNELTGRELMRDGRWLVAD
>CP032427.1|AYC36753.1|1115174_1115705_-|dTDP-fucosamine-acetyltransferase
MTDHEQTVRPARPEDIPGLVASSAGLFAEDAGTRDPSVDVDWPRRHGAESFAAALADPARLVLAVDHGGEVVGHLTGTLTEPSAVRPVKSATLNALYVRPAHRRGRVGGRLVAEFLSWAEARGATQAEVAAYAANPDAIRFYERQGFGAHAVTLRSVLGRKKEVGGETNDETEQAS
>CP032427.1|AYC36754.1|1115799_1116162_+|hypothetical-protein
MEILANVLVGLVAALHVYILVMEMFLWQKKPGMSFHGFDPEMARATAAMAANQGLYNGFLAAGLVWGLVAGDPTGFRAQVFFLLCVIVAGVYGAATANVRILFAQALPGAVALAAVLVAQ
>CP032427.1|AYC36755.1|1116158_1116722_+|hypothetical-protein
MTRAAPEDPRAARTRARLREALLAECAERPLEEVGVAALVRRAGVGRATFYVHYDGLEALAVDTCADVVRDAVEALHAWRGRPDPVHAPPALGEFFTSLTPHSALYRALLTPGGGGPLGRVLHRDLRAYSLRERELAGAADAPLVASAVAATFAGVLADWLHGLLDASAGEIADQVWQLLVALHASR
>CP032427.1|AYC36756.1|1116734_1117688_-|HTH-type-transcriptional-regulator-CdhR
MVHVERVVVLALDGVYPFELGIPARIFNAAGGRYEVFTCSVDGLPVRTNADFTIGVEHGPELLGTADTVVIAPVDSGRVSGELPDAVRAALEFVRPDARIVSICTGAFVLAAAGLLDGRRATTHWSLADQFRRMFPQVDLDPDVLFVEDGRILTSAGAASGVDVCLHIVRADHGGELANWVARCCVVPPFRDGGQAQYIAQPVPEQGAASTAATRVWALERLDEPLTLAELAAHARMSLRTFARRFHDEVGLSPGRWLIQQRVARARHLLESSDLSVDQIAGRVGFATGASLRQHLHAAIGVSPQAYRRTFQTAAAR
>CP032427.1|AYC36757.1|1117759_1118710_+|2-haloacrylate-reductase
MSTVNTMRAISQDTLGGTEVLKEIEVERPAPGPNQVLVRVRAAGLNPTDWKHRATGGFLGRPPFVLGWDVSGEVEAVGIGVATFEPGDEVFGMLPYPYGHGSHAEYVIAPVRALTHKPSSIDHTQAGALPLVSLTAWQALVENADLRPGQRVLIHAAAGGVGHVAVQIAKARGAYVIGTASAGKHDFLRELGVDEAIDYRETDFAEVVKDVDVVLDTLGGETSVRSLKVLRPGGIVVSILPVGSDEFGKEAERLGVRALRMLVDADRAGMNAIVDLVEKGELRATIERTFPLADAAEAHALGDTGRTTGKLVLVVD
>CP032427.1|AYC36758.1|1118732_1119839_-|Aryl-alcohol-dehydrogenase
MPITTRAAVVESGGASFTLSDVTLDDPGPHEAVVRLVATGLCHTDLGVASGGLPFPLPGVLGHEGAGVVEAVGSAVTGVAPGDHVVLSFTSCGDCRNCDGGHPAYCATWLPLNLLGGRRADGSSTLSRDGEPLGGHFFGQSSFAERALVDERSLVKVDPDVPLESIAPLGCGVQTGVGAVWNVLKPLTGSTIVVLGAGAVGLSAVMAAALTPATTIVAVDRVGERLALAEELGATHTVDAAAEDLGEALARITGGRGADGVVETTGNVGVLRQGVDALAARGTVVVVGAPPFGSEVSLDVNGLLGGRQVVGLTLGDAETQSFIPALVRLVKEGRLPLHRLISTYPFADIDQAVRDMSAGKAIKPVLTF
>CP032427.1|AYC36759.1|1119924_1121379_-|NAD/NADP-dependent-betaine-aldehyde-dehydrogenase
MSPIEIEPGRLFVGGRWREAADGARTEVIDPSRGTVVTTVAEAGAADVDAAVRAAREAFDAGTWSGLSGRERGRILYRVAELIRENADELARLESLDVGKPISLCHAVDITNAANDYEHFAALAHSLDGAVRDTPMNALAYTKREPLGVVAAITPFNFPLILAGSKIGPALAAGNTVVHKPADETPLSALYMAGLLRKAGVPDGVVNVVTGTGPVAGDALLRHRGVDKVAFTGSTAIGRHVAATAGEALKPVTMELGGNAANLVFEDADLEKAVGAIIKAFVFNTGQFCMGGPRLLVARPVYATLLGILADAVPGVPVGDPRDPGTVVGPMAGEKHLKKVEEYVELARKEGGRIVCGGERLDLDGGFYYKPTVIADLSNDSRVVQEEIFGPVLTVQPFDTEDEAVELANSTPYGLASGVQTTNLARAHRVADRLQAGIVWVNDWARLDPAVPFGGVKDSGYGREYGPEALDAYTKVKSVVVSLD
>CP032427.1|AYC36760.1|1121482_1121920_+|putative-HTH-type-transcriptional-regulator
MLETQVTKAPPSLLYMVKQVELVVRSHLDDLVRPSGITALQYTALTVLQRHDGLSAAQLARDSFVTAQSIADLVRSLETRGLVRRERNPNNRRELLILLTEEGRALLARHEAPVRELEERMVRDLTAHQTEQFRQALTTAWHALS

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Click the colored protein region to show detailed information

Crispr_ID: CP032427_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_4

1130892-1130989

Orphan

Consensus_repeat	Method
CGCGTCGCGGTGAGCCGGTGCGCGGGTCTCAGGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_4

>merge|CP032427|4|1130892-1130989|CRISPRCasFinder
CGCGTCGCGGTGAGCCGGTGCGCGGGTCTCAGGGCGGCACCATCGGTCGGTGAGGCGAGAGCCGCGTCCCGGTGAGCCGGTGCGCGGGTCTCAGGGCG

>CP032427|4|4|1130892-1130989|CRISPRCasFinder
CGCGTCGCGGTGAGCCGGTGCGCGGGTCTCAGGGCG	GCACCATCGGTCGGTGAGGCGAGAGC
CGCGTCCCGGTGAGCCGGTGCGCGGGTCTCAGGGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC36774.1\|1132063_1133101_+\|DNA-polymerase/3'-5'-exonuclease-PolX	unknown	unknown	gnl\|CDD\|236135
CP032427.1\|AYC36778.1\|1136395_1137052_-\|D-alanyl-D-alanine-dipeptidase	unknown	unknown	gnl\|CDD\|350618
CP032427.1\|AYC36770.1\|1128576_1129173_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377417
CP032427.1\|AYC36765.1\|1126392_1126740_-\|Na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|223938
CP032427.1\|AYC36780.1\|1138379_1138628_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC36771.1\|1129294_1130518_+\|Beta-glucanase	unknown	unknown	gnl\|CDD\|185693
CP032427.1\|AYC36782.1\|1139998_1141000_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366736
CP032427.1\|AYC36775.1\|1133140_1133797_+\|Phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|223620
CP032427.1\|AYC36776.1\|1133793_1134996_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226614
CP032427.1\|AYC36766.1\|1126739_1127480_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237140
CP032427.1\|AYC36769.1\|1128178_1128361_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC36767.1\|1127476_1127737_-\|Na(+)/H(+)-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|379087
CP032427.1\|AYC36777.1\|1135362_1136322_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	unknown	unknown	gnl\|CDD\|235736
CP032427.1\|AYC36781.1\|1138721_1140002_-\|N-acetylglucosamine-repressor	unknown	unknown	gnl\|CDD\|224851
CP032427.1\|AYC36779.1\|1137181_1138210_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187551
CP032427.1\|AYC36773.1\|1131103_1131922_-\|Glucose-1-dehydrogenase-2	unknown	unknown	gnl\|CDD\|237187
CP032427.1\|AYC36772.1\|1130527_1130764_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC36763.1\|1123963_1124626_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379417
CP032427.1\|AYC36768.1\|1127729_1128182_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225122
CP032427.1\|AYC36764.1\|1124626_1126393_-\|Na(+)/H(+)-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|223724

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC36776.1\|1133793_1134996_+\|hypothetical-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	5.19058e-11
CP032427.1\|AYC36778.1\|1136395_1137052_-\|D-alanyl-D-alanine-dipeptidase	gnl\|CDD\|350618	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes. This subfamily of D-Ala-D-Ala dipeptidase (also known as D-alanyl-D-alanine dipeptidase vanX; VanX; EC 3.4.13.22) also includes several uncharacterized proteins. This is a Zn2+-dependent enzyme that mediates resistance to the antibiotic vancomycin in Enterococci and other bacteria (both Gram-positive and Gram-negative). It is part of a gene cluster that affects cell-wall biosynthesis. The operon triggers the termination of peptidoglycan precursors by D-Ala-(R)-lactate instead of D-Ala-D-Ala dipeptides. The enzyme is stereospecific, as L-Ala-L-Ala, D-Ala-L-Ala and L-Ala-D-Ala are not substrates. It belongs in the MEROPS peptidase family M15, subfamily D.	1.59151e-61
CP032427.1\|AYC36770.1\|1128576_1129173_+\|hypothetical-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	6.93368e-27
CP032427.1\|AYC36765.1\|1126392_1126740_-\|Na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|223938	COG1006, MnhC, Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism].	2.29779e-19
CP032427.1\|AYC36782.1\|1139998_1141000_-\|hypothetical-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	8.75933e-21
CP032427.1\|AYC36774.1\|1132063_1133101_+\|DNA-polymerase/3'-5'-exonuclease-PolX	gnl\|CDD\|236135	PRK07945, PRK07945, PHP domain-containing protein.	0
CP032427.1\|AYC36775.1\|1133140_1133797_+\|Phosphoglycolate-phosphatase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	3.68312e-35
CP032427.1\|AYC36781.1\|1138721_1140002_-\|N-acetylglucosamine-repressor	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.81174e-50
CP032427.1\|AYC36766.1\|1126739_1127480_-\|hypothetical-protein	gnl\|CDD\|237140	PRK12567, PRK12567, putative monovalent cation/H+ antiporter subunit B; Reviewed.	1.66465e-31
CP032427.1\|AYC36767.1\|1127476_1127737_-\|Na(+)/H(+)-antiporter-subunit-A	gnl\|CDD\|379087	pfam13244, DUF4040, Domain of unknown function (DUF4040).	5.18177e-09
CP032427.1\|AYC36777.1\|1135362_1136322_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	gnl\|CDD\|235736	PRK06196, PRK06196, oxidoreductase; Provisional.	0
CP032427.1\|AYC36768.1\|1127729_1128182_-\|hypothetical-protein	gnl\|CDD\|225122	COG2212, MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit [Inorganic ion transport and metabolism].	1.88427e-08
CP032427.1\|AYC36779.1\|1137181_1138210_+\|hypothetical-protein	gnl\|CDD\|187551	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs. Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.20323e-98
CP032427.1\|AYC36773.1\|1131103_1131922_-\|Glucose-1-dehydrogenase-2	gnl\|CDD\|237187	PRK12743, PRK12743, SDR family oxidoreductase.	1.81691e-153
CP032427.1\|AYC36763.1\|1123963_1124626_+\|hypothetical-protein	gnl\|CDD\|379417	pfam14014, DUF4230, Protein of unknown function (DUF4230). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 203 and 228 amino acids in length.	3.31424e-38
CP032427.1\|AYC36771.1\|1129294_1130518_+\|Beta-glucanase	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	9.42945e-96
CP032427.1\|AYC36764.1\|1124626_1126393_-\|Na(+)/H(+)-antiporter-subunit-A	gnl\|CDD\|223724	COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion / Inorganic ion transport and metabolism].	2.38084e-68

>CP032427.1|AYC36772.1|1130527_1130764_-|hypothetical-protein
MTEIASPHIANPRIIVLGVQPTTPPFRIVEIDGEVVGEARAVTDVLEAAAAFGITVHDLDDPDVVRWVGGDKFTWTRH
>CP032427.1|AYC36771.1|1129294_1130518_+|Beta-glucanase
MASSRLLRRCLLAALSAVLLASGTAAADAPGASAAAVTTFSDTFDGPAGAAVESSKWQIETGDNVNNHERQYYTAGDRNAALDGQGHLVITARRENPAGYQCWYGTCQYTSARLNTSGRFTAQYGHVEARMKIPRGQGMWPAFWMLGTPVNWPDSGEIDVMENVGFEPSTVHGTIHGPGYSGSGGIGAGYSLPNGQAFADAFHTFAVDWAPDSITWSVDGNVYQRRTPADLGGRTWVFNKPFFLILNLAVGGYWPGDPDGSTSFPQQLVVDHVSVTTGDSATGAPIRGLAGKCVDVAGANPASGTAVQLYDCNGTAAQQWTVGADGTVRALGKCLDVTGGGTADGTAVQLYDCNGSGAQRWTVTGARDIVNPQSGKCLDVTGNNPANGTRLQLWSCTGGANQKWTVG
>CP032427.1|AYC36770.1|1128576_1129173_+|hypothetical-protein
MAWVLSRSRTASDAGTAKKEPEAKPAKKEPEAKPARPRRSPLSLVVRFVAMVFAFAFMVAFAVVLARLTLEPSPASVDLTHTNLHPGASLKLYLDQPEMRDAIKQIGGNILLGVPFGILVPIIAPKTRGLLRIALLTAVVMLLVEFAQGALVEGRAFDIDDVILNTSGALIGYLLLGRRLSRAVHKKPSARKQAANKA
>CP032427.1|AYC36769.1|1128178_1128361_-|hypothetical-protein
MTGRTTLLAGAELLAWWAALAALWLVLISTVDTLELAAGAAVAALGALAARAARRAVSAW
>CP032427.1|AYC36768.1|1127729_1128182_-|hypothetical-protein
MNGWILAAAVILAGGVGATVWGVATGPLRRRVVAQNLCTAFACPALLLLSQGYDRPSYVDLALVLALLGPVGTLVFARLLADELADDPPSAWGLTYAAAAVGALVVPAVCVAAGPSRAMAKLLFVGVLLIGGNVVASRALSGGFPEARHG
>CP032427.1|AYC36767.1|1127476_1127737_-|Na(+)/H(+)-antiporter-subunit-A
MADAVIVVALLLVAASATAAVAARDPVRQALVLSVLGVVLAILFTVLQAPDVALSQLAVGSALTPLLLLLAVHKVRRRGRGEGPRR
>CP032427.1|AYC36766.1|1126739_1127480_-|hypothetical-protein
MSRRFRLWLVAVGGAGLAALFTAAALDLPAFGGDHHPYGDRAVHASLTRHTANVIASINFDQRAFDTLGEMTILFAAVIGCGVLLRQTRDEHRAAPEPQEVARPVRRYALLVLPVALLTGLYVIAHGQLSPGGGFQGGVVAATSLHLLYLGADYRALERVRPVALYETGDAVATSAYVVTGLAALIGGSAFLANTLLPYGTFNTLSSGGTVPLLNAAVGMEVACAVVVLLARFLDQAVEIEEGNGT
>CP032427.1|AYC36765.1|1126392_1126740_-|Na(+)/H(+)-antiporter-subunit-C
MDVLPYLVAGWVFLTGCYGLATSRNLIHAVGCLSVCQAGTYVLLLAVGYRHDATAPVFSDLKPGSRAVVDPLVQALTLTDVVVGATVTALLLALVVQISKRHGTVDPDELSELRG
>CP032427.1|AYC36764.1|1124626_1126393_-|Na(+)/H(+)-antiporter-subunit-A
MDDLLPLLVAVPLLGAALLVAGGRLVPRPVAETVGCAVAAATAALALVLLLNSSPPFLEWAGGWTPVNGRSVGIVLIGDGPGLGMAALASLLTLAALAYSWHYFDEPPSGHAGSFPALLLLFQGGMCGFAIAGDLFNAFVWFELMGVAAYALTGHRVEEARAVQGALTFAVVTSLGAYALLMGIGLLYARTGELGMHAIGRGLDAQGRPDALVLAAFVLVMTGLLVKAAAVPFHFWLPDAHAVAPTPVCMLLSGVMVELGTFGVWRVYGTVFAGPGGVPAPEFERTLVTLGALAAVIGAVMCWYQRHIKRLLAYSTVAHTGLFLIGVGVLKPEADDGIALYLLGHAGVKAALFACAGILLDRYGSVDEHALHGRARELKGVAVLFTLGGLGLAGLPPFGTALGKSLTEEAVGGPLTVLYVAASAVTAAAVLRVAGRVFLGLGPKPADGTGSGYETTGSGERPETRHRLSRIPDTMTAVPAVLLAGSLAVGVVPGFAKVVAYSVNETGSAGVAASAHWTPAGVLLGLLSTLLAGVLALLAVTRPKTFAAPDGALWLRRLQSGHVGDYVAWVLVGATVLGALTLPGLLGG
>CP032427.1|AYC36763.1|1123963_1124626_+|hypothetical-protein
MTTPIRRVSRRMPGWAKVLTAVVVVLVVFFAGIRLSVIPGLKDLFGTETHDRSGPALLESIQDISRYDAASGNFQVVVDLEKDTKFLPDAIRGSRTLYVGAGAVDAYVDLGKVAKNDVTVNEDRTAATLHLPHAQLGKATLDADRSYAVSKQRGLLDRLGDFFSDNPNSEQAVQKLAVKHITEAAKESELTKRAEINTTTMLKGLLGSLGFKKVEVVYGS
>CP032427.1|AYC36773.1|1131103_1131922_-|Glucose-1-dehydrogenase-2
MSTPSDPTASHTKVAVITGADSGIGRATAVRLARAGMDVGITWHSDQKGAEETAEEVRAQGRRAEVARMDLTRLPSAADTVDELCDRLGRLDVLVNNAGTGTMTPFLDLEPDTVREVLDVDLVGPFLCGQRAARHMIRQGSGGRIVNVTSVHEHQPRVGAAPYCAAKGGLGLLTQVMALELAEHGITVNAVAPGEIATPMTGQEDTDVRTEERPGIPLGRPGDAREVAAVIAFLAGPEATYVTGASWSLDGGMLRMGPQAGSHLGDDRWRRP
>CP032427.1|AYC36774.1|1132063_1133101_+|DNA-polymerase/3'-5'-exonuclease-PolX
MDPVEALERIAFLLERALAPTYRVRAFRTAARVLAGLSADEVRERAEAGSLESLKGIGPKTAQVVREALAGGVPGYLEKLEGEADAPLTGGGAELRALLRGDCHLHSDWSDGGSPIEEMGRTAAELGHEWAVLTDHSPRLTVARGLSPERLREQLDVVAALNETWAPFRLLTGIECDILDDGSLDQEPELLDRLDVVVVSVHSKLRMDARAMTRRMVAAVRNPHADVLGHCTGRLVTGRGRPESEFDADEVFAACAESGTAVEINSRPERLDPPRRLLRRAVEAGVLFSVDTDAHAPGQLDWQILGCARAEECGVPAERIVTTWGMDELLAWSREGRVPSRVATA
>CP032427.1|AYC36775.1|1133140_1133797_+|Phosphoglycolate-phosphatase
MERAAVFDVDGTLVDTNHLHVTTWWEALRQAGHQVPMHAVHRAIGLGSEDLVAHLLGDDRDKDRDAELSAAHKALYGQYFDRLPALRDAGRLLRRLDHDGWRVVLATSAGGAELSALRRAIDADDAIMATASADDVEEGKPAPEPVEHALELAGVPAENAVFVGDTVWDMKAGSRAGVRCVGVLCGGIPRADLEEAGARAIYDDPAHLLADLGDSFLA
>CP032427.1|AYC36776.1|1133793_1134996_+|hypothetical-protein
MTWGFPRNPQRMTDVTEVVRRLSRPAYALQREAGAVGRAARAAWRGPGRQRDLVVQSLKASAAAILAWLVAGVWMGDPMALMAPWVAVVLVQATVFSSLMQAARQLAAICCGTVFAAVALAATGSTLGAVALSVPPLVLLANWPRFGDQGIYGATTALFTLATGAASASSVGHRVGQAALGAVIGLAVNAFVLPPIHLRDVRENLAALAREAGDVLLRVAGDLREGEWDSQGWSHASAHLEHRLEALRSARGWSRESLRLTAAPLRAVRRPPEPAPPEQDDERWSRVTGHIRALTRTLAVAADDERVPTAPSGTVLDSYARLLELIGDACHAEARRILGAGDDVHPDDEAMETMRELRGRLHDGLREHAGQGADGTTVLGTLLLQAENLWSETLPTGRTG
>CP032427.1|AYC36777.1|1135362_1136322_+|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase
MSTAQHKIGSGFGAHSTADDVLAGVDLSGKLAIVTGGYSGLGLETTKALVKAGARVVVPARRPDTAKEALAGLDGVEQDVLDLGDLDSVHAFAERFLASGRTIDLVIDNAGIMACPETRVGPGWEAQFATNHLGHFALVNRLWSAIEPGGARVVSVSSRAHHFSGMRWDDVHWRTGYDKWQAYGQAKTANVLFAVHLDKLGAERGVRAFSLHPGGILTPLQRHLPKAEMVERGWIDEQGNALNPSGFKSPEQGAATQVWAATSPQLDGMGGVYLEDCDIAEPAVDGDQSGGVRAWATDPEQAARLWTLSAELTGVNAFA
>CP032427.1|AYC36778.1|1136395_1137052_-|D-alanyl-D-alanine-dipeptidase
MSEIILMSDARVAAVPVEENGEPLVDVRGRLLVDDRKHEDSQGAEVHLRQGVLDRLLAAEGLLPDGLRLLFVEGYRPPALQRHYFETYADALRADHPDWSADRIRTAASRYVSPPEIAPHSAGAAVDLTLVSADGRELDLGTALNANPEESDGACYTGAGNITEEAKANRAVLGEALAAAGLVNYPTEWWHWSYGDRYWALETGAPAALYGPKELDQL
>CP032427.1|AYC36779.1|1137181_1138210_+|hypothetical-protein
MSTSSGSRIVVTGATGNVGTSVVRLLSEDPEVGSVRGLARRIPDWSPARTEWSAVDLASAQADLAEEFAGADAVVHLAWAFQPTHDPATTWRTNVLGSIRVFEAVAAAKVPTLVHASSVGAYSPGPKEHAVDESWPTHGWPDAAYTREKAYLERALDTFERDHPAVRVVRMRPAFLFKRESASEQRRIFGGRFLPGQLARPELLPFLPDIPGLRVQALHTDDAARAYVLAVRSQVRGAFNLAGEPPVDAELLGELLGARPVRLPRTAARSAIAAAWGLHLLPASPHLFDAVLRLPLMDCTRARTELGWYPEHTATEVLEEFLHGMQQGAGAPTEPMRGRMVG
>CP032427.1|AYC36780.1|1138379_1138628_-|hypothetical-protein
MDHRSEGPGENGDPIPRDLPDQQAGEGEDPWEVATVPGEDEGAADRPEDVPDTDEAGTSRRQGAQRSDTVHPEHPEAQESSG
>CP032427.1|AYC36781.1|1138721_1140002_-|N-acetylglucosamine-repressor
MNGRTVRDLRRANRTAVLQRLWFDGPLSRFELGPATGLSSGSVSNVVADLIADGLVEEAGSVDSDGGRPRTLLRVAPGSGHMIGVDVGETRVRVELFDLTLTELARAERPLTGRGYDVEVVVGHIRDGIAEVLADAAIEPGRLLGVGIGVPGIVAHTPDSGAVVHGQTIGWDAVPLEALLRTGSPLPAGVRYFIDNGARTLGQAEMWFGGGRGARSAVVVLFGSGVGACLVTPEVEHGRAVEWGHLTVRVRGRRCRCGALGCLEAYAGAESLLERWREEGGRPPEGADEETALTALLAAAYPSGDTEGDPVALAVLEETAEYLGAGLSDLINLFQPERILIGGWAGLQLGERFLPAVRRHATAYALRYPAEKVTVELGRLGPDAVTVGAAILPLADFFGRGGRRPEPAPEGPAPAWRAALDDRAPR
>CP032427.1|AYC36782.1|1139998_1141000_-|hypothetical-protein
MADSWEWGRQVLEDAGLDPDRLTAVRPLSGGTYNTVEELLLTDGTRYVVKVPPAATVPGLSYERGLLVAEAEFYRRAAEAEVAAPHVVAFGTGAAVPHLLMTACPGEPWDASVTAAERPPLRRELGRQVARLHSVTGPGHGYPSRALGPLAPDWRTAFTTMIDAILGDARDYGARLPRSVAQVEAAVRAGYPALDEVTVPALVHFDLWDGNILVDRPAGGEPRIGGLIDGERMFWGDPLADFVSLALLGDIKQDEAFLTGYREAGGRAEFDVPARVRLALYRAYLYLIMLTETVPRAVDVERERWVQSTVAPHLVAALDEIEALSRVTGVRTP

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Crispr_ID: CP032427_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_8

3235244-3235314

Orphan

Consensus_repeat	Method
GTACGGGGGTGGAAGACCGTAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_8

>merge|CP032427|8|3235244-3235314|CRISPRCasFinder
GTACGGGGGTGGAAGACCGTAGATCTTCCTTTGCGCGTTCCCGCGCTCGTACGGGGGTGGGAGACCGTAGA

>CP032427|8|7|3235244-3235314|CRISPRCasFinder
GTACGGGGGTGGAAGACCGTAGA	TCTTCCTTTGCGCGTTCCCGCGCTC
GTACGGGGGTGGGAGACCGTAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC38561.1\|3235337_3236729_-\|Diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
CP032427.1\|AYC38567.1\|3243052_3244210_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316042
CP032427.1\|AYC38570.1\|3245667_3246276_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC38551.1\|3222633_3223281_-\|Putative-threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
CP032427.1\|AYC38566.1\|3242861_3243056_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378935
CP032427.1\|AYC38565.1\|3241401_3242865_-\|Tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|271189
CP032427.1\|AYC38558.1\|3231610_3232540_-\|Homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
CP032427.1\|AYC38553.1\|3224351_3225428_-\|Peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
CP032427.1\|AYC38554.1\|3225530_3225749_-\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234576
CP032427.1\|AYC38555.1\|3225899_3227006_-\|Putative-transcriptional-regulator-YwtF	unknown	unknown	gnl\|CDD\|367673
CP032427.1\|AYC38568.1\|3244206_3245106_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378140
CP032427.1\|AYC38562.1\|3236741_3238124_-\|Arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
CP032427.1\|AYC38557.1\|3229165_3231199_-\|Transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|237171
CP032427.1\|AYC38556.1\|3227212_3229036_-\|Trypsin	unknown	unknown	gnl\|CDD\|238113
CP032427.1\|AYC38569.1\|3245196_3245664_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC38564.1\|3239617_3241315_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC38560.1\|3233852_3235142_-\|Homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
CP032427.1\|AYC38559.1\|3232787_3233846_-\|Threonine-synthase	unknown	unknown	gnl\|CDD\|236013
CP032427.1\|AYC38563.1\|3238307_3238757_-\|Response-regulator-MprA	unknown	unknown	gnl\|CDD\|381093
CP032427.1\|AYC38552.1\|3223333_3224179_-\|Release-factor-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC38561.1\|3235337_3236729_-\|Diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	8.62269e-171
CP032427.1\|AYC38567.1\|3243052_3244210_-\|hypothetical-protein	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	4.82756e-34
CP032427.1\|AYC38551.1\|3222633_3223281_-\|Putative-threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	3.62793e-69
CP032427.1\|AYC38568.1\|3244206_3245106_-\|hypothetical-protein	gnl\|CDD\|378140	pfam09250, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.	2.53664e-40
CP032427.1\|AYC38565.1\|3241401_3242865_-\|Tyrosine-recombinase-XerC	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	9.706e-16
CP032427.1\|AYC38558.1\|3231610_3232540_-\|Homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	5.466e-108
CP032427.1\|AYC38553.1\|3224351_3225428_-\|Peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
CP032427.1\|AYC38554.1\|3225530_3225749_-\|50S-ribosomal-protein-L31	gnl\|CDD\|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	5.63393e-39
CP032427.1\|AYC38555.1\|3225899_3227006_-\|Putative-transcriptional-regulator-YwtF	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	3.03004e-64
CP032427.1\|AYC38562.1\|3236741_3238124_-\|Arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	6.00236e-21
CP032427.1\|AYC38557.1\|3229165_3231199_-\|Transcription-termination-factor-Rho	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0
CP032427.1\|AYC38556.1\|3227212_3229036_-\|Trypsin	gnl\|CDD\|238113	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.	6.09083e-54
CP032427.1\|AYC38566.1\|3242861_3243056_-\|hypothetical-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.000156937
CP032427.1\|AYC38560.1\|3233852_3235142_-\|Homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
CP032427.1\|AYC38559.1\|3232787_3233846_-\|Threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
CP032427.1\|AYC38563.1\|3238307_3238757_-\|Response-regulator-MprA	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.74617e-28
CP032427.1\|AYC38552.1\|3223333_3224179_-\|Release-factor-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	1.6367e-106

>CP032427.1|AYC38560.1|3233852_3235142_-|Homoserine-dehydrogenase
MRTRPLKVALLGCGVVGSEVARIMTTHADDLAARIGAPVELAGVAVRRPSKVREGIPQDLVTTDATALVKRGDIDVVVEVIGGIEPARSLITTAFEHGASVVSANKALLAQDGAALHAAADQHGKDLYYEAAVAGAIPLIRPLRESLAGDKVNRVLGIVNGTTNFILDKMDSTGAGYQEALDEATALGYAEADPTADVEGFDAAAKAAILAGIAFHTRVRLDDVYREGMTEVTAADFASAKEMGCTIKLLAICERAEDGRSVTARVHPAMIPLTHPLASVRGAYNAVFVESDASGQLMFYGPGAGGAPTASAVLGDLVAVCRNRLSGTTGPGESAYAALPVEGMGEVVTRYHISLDVADKPGVLAQVATVFAEHGVSIDTVRQQGKDGEASLVVVTHRASDAALGGTVEALRKLDTVRGVASIMRVEGE
>CP032427.1|AYC38559.1|3232787_3233846_-|Threonine-synthase
MTHQWRGIIEEYRDRLPVSDSTPVVTLREGGTPLVPAQVLSERTGCEVHLKVEGANPTGSFKDRGMTMAITRAKEEGAKAVICASTGNTSASAAAYAVRAGMVCAVLVPRGKIALGKMGQALVHGAKILQVDGNFDDCLTLARSLSDNYPVALVNSVNPVRIEGQKTGAFEIVDMLGDAPDVHVLPVGNAGNITAYWKGYKEYAADGVAAKTPRMWGFQASGSAPIVRGEVVKDPSTIATAIRIGNPASWKFALAAQEESGGFIDEVTDREILRAYRLLAAQEGVFVEPASAASVAGLLKAAEQGKVDPGQKIVCTVTGNGLKDPDWAVAGAPQPVTVPVDAATAAERLGLV
>CP032427.1|AYC38558.1|3231610_3232540_-|Homoserine-kinase
MAGPAFRAAAVRVRVPATSANLGPGFDALGLSLGLYDDIVVRVADSGLHIDIAGEGSETLPRDESHLLVRSLRTAFDLLGGQPRGLEIVCANRIPHGRGLGSSSAAICAGIVAARAVTIGGEARLDDTALLELATEIEGHPDNVAPCLLGGFTLAWMESGAARAIRLEPHDSIVPVVFVPGKPVLTETARGLLPRTVPHVDAAANAGRAALLVEALTRRPELLLPATEDRLHQEYRAPAMPESAALVERLRADGVPAVISGAGPTVLALVDADSADKVAHLAGEGWAANRLELDDQGASVLPLAAASDM
>CP032427.1|AYC38557.1|3229165_3231199_-|Transcription-termination-factor-Rho
MSDTTDLMGARVEETAAAPDTDASAPASGAGSRRRRGTGLDGMVLAELQQVASGLGIRGTARMRKSQLIEVIKEAQAGGGAPAKADTAADAKPKRRATSKARTGETAEKKAEAKAEAPAEKAVAQQQIEIPGQPAAERGSDDAPAERRRRRATAEAGAPAGGTETIVAEAKTEPKAETPAQAQQQPQADADGEGRGRRDRRDRGRDRGERGERQDRGDRRKGDDQQQGQGGGQRQQQNQQQGGGRQDRQDRQQRDNGPQDDDDFEGGRRGRRGRYRDRRGRRGRDEIGGAGEPQINEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHITGAVRQPKEGERREKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSPIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVDASGTRKEEILLGNEELAVVWKLRRVLHALDQQQAIELLLDKMKQTKSNVEFLMQIQKTTPTPGNGD
>CP032427.1|AYC38556.1|3227212_3229036_-|Trypsin
MGISMSGGAGRRHRRRLWIALPAAVAATLLAGSANAATVPTPAPKPPVKAVSAAPSQAELKKRLVAAVAADDGSGAVVRPSRSTASSPAVDGTVSPMIIGGTTTTISAAPWMAQLWYVDDHGTTDTSDDTGFFCGGAVVAPTKILTAAHCVKGANWAKGGVVVTGATQLLSDDGDLHGGTATGVLRQWYHPSYNEDTIDNDIAVLTLAAPVKAPTIRLTTSTDTGSYDPSTTGAKTAKVYGWGRTSSTNDNVSQTLKTATLPIKSDATCAAAYGSWFIKGHMTCAGPPASGSDSGTTAICSGDSGGPLVVNGRIVGVVSWNVTDCVAKGAYSVFTKVSKYVGAVYPRIDDTNLNFDHKADLWVRKSSTKVGYELDSKGTTLAAPQSWGDWNGVNLVRQTDLNRDGFQDLLYRVSATGDVYWLRFVPSSTGGSWAAPKKIFTDWRTRTRIVTPGDVTGDYKPDLLSVDSAGVLWIYPGKGDGSFAARVRVGGGWSQYNQLLGHGDFTGDGKADVLARNKSTGDIYLYKGTGKSGTGVFAARVKVRSNWSGYNAFDAVGDITGDGRADLVARTAGGTLYLYKGTGKATSEIFATRVTVGTGFQQYDIFG
>CP032427.1|AYC38555.1|3225899_3227006_-|Putative-transcriptional-regulator-YwtF
MSAESTPIPGKPGGKGRRRKPRSKGRKGLLVTAWVAAGIVVLGGTGAGYLYFKLNGNIKSVDIDQVLGSARPTKVDNGSENILVLGSDTRSGSNKKLGGGTDDGSARSDTAMVVHVYKGHKKATVVSIPRDTLIDRPECTDTQGERHDAAKGVMFNSAYTTGGAACAVKTVESMTGIRMDHYLEVDFSGFEKLVDELGGVTVTTTKAIKDPDSHLDLKAGTHELTGAQALGLVRTRHGVGDGSDLGRIQLQQAFIKALVKQIKSVGVLSNPKKLYDLADTATKAVTTDSHLGSVNSLVSFASGLKGISPADMTMVTMPVQYDPANPNRVLVQQTKAKQIWTALENDRAVPKSATEGNATGQAKGVVTS
>CP032427.1|AYC38554.1|3225530_3225749_-|50S-ribosomal-protein-L31
MKRDTHPEYVETQVSCTCGASFTTRSTITSGTIRAEVCSECHPFYTGKQKILDTGGRVARFEARFGKAAAKK
>CP032427.1|AYC38553.1|3224351_3225428_-|Peptide-chain-release-factor-1
MFEAVEELLGEHAELEKKLADPSVHSDQANARKLNKRYAELTPIVATYRSWKQTGDDVETAKELAADDPDFAAEVKELERTREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGDESALFAGDLLRMYLRYAERVGWKTEIIDSTESELGGYKDVQVAVKTKGGQGATEPGQGVWARLKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVDVEINPNDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGVVASCQNEKSQLQNKEQALRILRSRLLAAAQEEAERNAADARRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLDAVIQACVDADSAAKLAAA
>CP032427.1|AYC38552.1|3223333_3224179_-|Release-factor-glutamine-methyltransferase
MNLLLAEVAQATQRLADAGVPSPRNDAEELAAFVHGVKRGALHSVKDADFDARYWETIARREQREPLQHITGLAYFRYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPCIVDLCTGSGAIALALAQEVPRSRVHAVELSEEALRWTRKNVEGSRVDLRQGNALDAFPDLDGHVDLVISNPPYIPLTEWEYVAPEARDYDPELALFSGEDGLDLIRGLERTAHRLLRPGGVVVIEHADTQGGQVPWIFTEERGWADAADHPDLNNRPRFATARKAMP
>CP032427.1|AYC38551.1|3222633_3223281_-|Putative-threonylcarbamoyl-AMP-synthase
MARRYDTNDATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEAVSDLLEAKGRGRNMPTPVLIGSPNTLHGLVTDFSELAWELVDAFWPGALTLVAKHQPSLQWDLGDTRGTVAVRMPLHPVAIELLTEVGPMAVSSANLTGHPSPETCDAAQDMLGDSVSVYLDGGPTPGNVPSSIVDVTREVPLLLRAGAISADELRKVVPDLEVAN
>CP032427.1|AYC38561.1|3235337_3236729_-|Diaminopimelate-decarboxylase
MSRSAHPAGPRHADVLPEGHYSAPPADLNTLDRKVWAQTVGRNEDGVVTVGGVDVKALAEEHGTPAYIVDEADFRARARAWRTAFGHDADVFYAGKAFLSRAVVRWLHDEGLNLDVCSGGELATALSAGMPADRIAFHGNNKSEQEITRAVESGVGRIVLDSFQEIVRVAHIAQSLGKRQRVQIRITVGVEAHTHEFIATAHEDQKFGIPLAGGQAAEAVRRALKLDGLELIGIHSHIGSQIFDMSGFEVAAHRVVGLLKDIRDEHGVELPEIDLGGGLGIAYTSADDPREPHEIAKALTEIVSRECEAARLRTPRISVEPGRAIVGPTAFTLYEVGTIKPLDGLRTYVSVDGGMSDNIRTALYDAEYSVALVSRTSDAEPMLARVVGKHCESGDIVVKDAFLPADLAPGDLIAVPATGAYCRSMASNYNHVLRPPVVAVHDGESRVIVRRETEEDLLRLDVG
>CP032427.1|AYC38562.1|3236741_3238124_-|Arginine--tRNA-ligase
MTPVELSRTVLRAVRRAVDDGELDVGVPAAVKVTPPGPGGCGDYATSLALQLAGPAGQPPLRVAEILRTRLLHSDGIGDVVVTGPGFLNISLQGEGSQAGLVREILEAGERYGHVERPTGQLVQLHAPHEVRAVVVMDALARVLRSQGALVRTSCASRPEPDWAQVLGAHVDGHGSLEAPVRRDAYGIPEAAARLDAHGSLEAPAHVDAHGALEAPVRRDAYGTPEVPAPFGAHGIHGAPAGPDAHGPQGAPTRPGAHGTPGAHGTPTSLHIPLRPVPATPDPTPLGRDAARWALLHPAAHDRPRVTAEHLVQRESNPLFRVRYAHARTRALSRNAADLGFHAEPGQLESPALATPARGTPAKDAAVPPTAAQTPTTLLTTLAAHPRTLQAVAAHHAPDRLARHLVTVADAALPFLLTVLPRGAEKPSAAHRARLALAEAVGAVLAGGLSLLGIDAPEHL
>CP032427.1|AYC38563.1|3238307_3238757_-|Response-regulator-MprA
MLVVDDNKVIRQLIRVNLELEGLEVVTAADGVECLDVVHQVQPDVVTLDVVMPRLDGLRTAAQLRSDPRTAHLPLAIVSACTQHEVDSGLDVGVDAFLAKPFEPAELVRLVRQLMERAERARTEQGDGGSLVGPVLGGGDAERVRQHGG
>CP032427.1|AYC38564.1|3239617_3241315_+|hypothetical-protein
MTEALIARHNKRMMNLPEIPSSAIQPVMSALLSFGLIDMTLRKLGATRDRHPAHYGVSWVDHLAWGADSAFVAARLIFSGQFVGASAVLRSQMERWTENVAYNYSVKHIPGESAAEFAARAWSRGHEKYPSAIKQESDTSVGSEISDLDFWEDERRSLGFQGPSVIIGKDYRVYPGTLMELLSELLHGRGDFIKVLRWDACDILADEPTELVEASQWLSDVLMLNLRQIRVCLATLAMEQGKPELAPALFALPERIYAGEATPIPSSLFPLLPQTGLSPAILEQMRDASYAYEEVMRGRRPAGRLFRDDEMVHLHFYERRARAQRWALKALEEEKEKLGDAFNIDGLGGRDSTNVMATEMAGILSLWLGDSPEGNAAAMCASALRTAHWLWLEDDDRSMAALRVVLEQCARLRVWAMKPEKAAKLEESPSSTPKDWVNAAGWRRLAPLNRALGEFAHFHARIRREGAWEILVGVQANGGSPDSIYTARGHVLQTVTAMVMVESTRSVARLSPVMENAFREITAEAFTDAGELQASLEDFLDRAMSLKDVPRGPYTFHGPALDSDE
>CP032427.1|AYC38565.1|3241401_3242865_-|Tyrosine-recombinase-XerC
MSAPEDTSPLRPHGEARPGYSLDVRLWKVTKVARKARPYQLRWVVGGKVSSATFATSALAESRRSELRQAMRRGEAFEIASGQPESEVRAAEQAAATVAEAEPSLRWFEFCRKYVARRWRISAAKTREGIADGLAAVSLAMVKRGENTPEDKYLRLAFRWAIVPANVGQEPPAELKAAYEWLTKEDRPIVDLVDPEVFEDVLYRLSYRLDGTPAAGETHKRRRRVLNTALEHAVTAKELPENPLQGAHKKRVGSGGMVDRRVLVNAVQGRQLLTAVSYVGSWDRNRGRRLAAFFAVQYYAGLRPAEAVGLRLSDCHLPDAGWGTLTLRETRPISGKQWTDSGERHDRRGLKAREADTDRPVPIPPVLVAILRTHLREFGTAKEGRVFGNERGGVVGSSTYWRVWEEARVFALPPERVDSPLAGRPYDLRHACITRWLNAGVPIAEVARRVGNSPEVIHRRYHGCIDGHEEAANAKIVKALNEEGDMA
>CP032427.1|AYC38566.1|3242861_3243056_-|hypothetical-protein
MSARTRDEKMTVKEVITDLKVAPSTFYRWRQLGKAPRSIKLPNGDVRIRRSEYERWLAEREDAA
>CP032427.1|AYC38567.1|3243052_3244210_-|hypothetical-protein
MSANPIPPLHLYSVPSDPEPAPTALPKRERPRTAWTADQLMAAHFPEPKWAVPGILAEGVSVLAGPPKVGKSWLSLGLGLSVSAGGNAFDSVPVQGGPVLYLALEDTPRRLQTRMGKLLGGQPAPAGLTLVTECPSFPQGGTEAIAQWLERNPDARMVVIDVFAKMRGPAPAGISAYDADYVAVGYAKRLADHYGVAVVLVHHVRKAGSEDFLTEVSGTNGIAGAADATLVLKRARGQADGILHVTGRDVDEAEYALSFQPASGAWHLLDGPVTDHTVSDTRATILRYVRAHPGAKPKDMASELPQVDLDTIRRTCNRMADAGQLTKDPSGRYYPDTDTRTQTSPEVSALSDCPVNPSDQCEYPGQSELELSGLSGADEAEGMAE
>CP032427.1|AYC38568.1|3244206_3245106_-|hypothetical-protein
MPHPDDSAQLTAARDAASRDWRVFPLIPGDKRPAVSDWETRATTDPDRITRAWSTAAFNIGIATGPSGLVVIDLDKPKHPGDTPPAAWAEHGVTDGADVLAVLCERHSQPFPADTYTVRTWSGGTHLYFTAPEGEPLRNTAGDSARGLGWKVDTRAWGGLVVGAGSTFAGFPYEVIRNAPAAPLPDWLAELLRPAPLPPQTPITVALAGRGRRTAFLRSAINGEIERVTNSGPHEHNNSLYVAAVALGQLAAGGELSEADVTGWLLTAALQVGQGEREARRTIASGLRAGARRPRTVAA
>CP032427.1|AYC38569.1|3245196_3245664_-|hypothetical-protein
MFEIRVICDPADTDRVTTALSGAFATGSVRDYPTRDGKRQRLYVSADHRPEPKPWPTPEEAYALAPSIISEIGWTARTAADIPHHDGPHREYWLRKAAVLDRIALSDETADTVTSDASDLAARAAQRLMDVDGTAVICDPRRYTRQQYAAWAKNQ
>CP032427.1|AYC38570.1|3245667_3246276_-|hypothetical-protein
MNEPIVARHWLAIATPKAAPALATTTVLALARIWNANGAEHSVGNAALMTTLSLAAAASGVCASIGRAGDPVIAGTAFAASGGLALAGVAGYTDGLSLPLLLWALTTAVAYGLAARYWRTDRRERIAHERHTSGRREEHAHVERVEALRAGAQIEVARTGAAYAEQLAQALITRAALPGFDFTAVEAAGLPELPTTSTSKEH

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Crispr_ID: CP032427_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_9

3276567-3276713

Orphan

Consensus_repeat	Method
GGCGGGCGCGGGTGAGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_9

>merge|CP032427|9|3276567-3276713|CRISPRCasFinder
GGCGGGCGCGGGTGAGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCCCGCTGCGCTGGGCTTGGGACGGGCGCCTATGGGGGTGCCGGGTGCGGTTGTTCGGCGGGGGCGGGTGAGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCC

>CP032427|9|8|3276567-3276713|CRISPRCasFinder
GGCGGGCGCGGGTGAGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCC	CGCTGCGCTGGGCTTGGGACGGGCGCCTATGGGGGTGCCGGGTGCGGTTGTTC
GGCGGGGGCGGGTGAGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC38606.1\|3280987_3282352_+\|putative-FtsW-like-protein	unknown	unknown	gnl\|CDD\|223843
CP032427.1\|AYC38597.1\|3273488_3273935_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236776
CP032427.1\|AYC38610.1\|3285241_3286354_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153097
CP032427.1\|AYC38591.1\|3268844_3269321_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC38605.1\|3280536_3280935_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377965
CP032427.1\|AYC38603.1\|3278400_3279156_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC38594.1\|3271178_3272276_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226122
CP032427.1\|AYC38602.1\|3277775_3278309_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350376
CP032427.1\|AYC38607.1\|3282348_3283833_+\|Penicillin-binding-protein-A	unknown	unknown	gnl\|CDD\|223839
CP032427.1\|AYC38592.1\|3269416_3270397_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC38608.1\|3283952_3284459_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378694
CP032427.1\|AYC38596.1\|3272970_3273480_+\|RNA-polymerase-sigma-E-factor	unknown	unknown	gnl\|CDD\|132028
CP032427.1\|AYC38600.1\|3275668_3276550_+\|Multifunctional-non-homologous-end-joining-protein-LigD	unknown	unknown	gnl\|CDD\|240133
CP032427.1\|AYC38593.1\|3270520_3271111_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC38601.1\|3276858_3277662_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377990
CP032427.1\|AYC38609.1\|3284470_3285097_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC38599.1\|3274550_3275606_-\|Non-homologous-end-joining-protein-Ku	unknown	unknown	gnl\|CDD\|238408
CP032427.1\|AYC38598.1\|3274004_3274505_+\|Peptidyl-prolyl-cis-trans-isomerase-cyp18	unknown	unknown	gnl\|CDD\|238901
CP032427.1\|AYC38604.1\|3279152_3280382_+\|Sensor-protein-CseC	unknown	unknown	gnl\|CDD\|223715
CP032427.1\|AYC38595.1\|3272370_3272784_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC38606.1\|3280987_3282352_+\|putative-FtsW-like-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	4.04128e-69
CP032427.1\|AYC38597.1\|3273488_3273935_+\|hypothetical-protein	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	0.00561912
CP032427.1\|AYC38610.1\|3285241_3286354_-\|hypothetical-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	6.63525e-14
CP032427.1\|AYC38607.1\|3282348_3283833_+\|Penicillin-binding-protein-A	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	3.54993e-87
CP032427.1\|AYC38605.1\|3280536_3280935_+\|hypothetical-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	2.09095e-06
CP032427.1\|AYC38594.1\|3271178_3272276_+\|hypothetical-protein	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	1.30231e-29
CP032427.1\|AYC38602.1\|3277775_3278309_+\|hypothetical-protein	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	4.27784e-12
CP032427.1\|AYC38608.1\|3283952_3284459_+\|hypothetical-protein	gnl\|CDD\|378694	pfam11695, DUF3291, Domain of unknown function (DUF3291). This bacterial family of proteins has no known function.	7.6039e-79
CP032427.1\|AYC38596.1\|3272970_3273480_+\|RNA-polymerase-sigma-E-factor	gnl\|CDD\|132028	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.	3.00384e-41
CP032427.1\|AYC38600.1\|3275668_3276550_+\|Multifunctional-non-homologous-end-joining-protein-LigD	gnl\|CDD\|240133	cd04863, MtLigD_Pol_like, MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates containing a 5'-phosphate group at the gap.	6.29262e-118
CP032427.1\|AYC38601.1\|3276858_3277662_-\|hypothetical-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	0.000243631
CP032427.1\|AYC38599.1\|3274550_3275606_-\|Non-homologous-end-joining-protein-Ku	gnl\|CDD\|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	1.2146e-111
CP032427.1\|AYC38598.1\|3274004_3274505_+\|Peptidyl-prolyl-cis-trans-isomerase-cyp18	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	2.76865e-80
CP032427.1\|AYC38604.1\|3279152_3280382_+\|Sensor-protein-CseC	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.10811e-33

>CP032427.1|AYC38600.1|3275668_3276550_+|Multifunctional-non-homologous-end-joining-protein-LigD
MTPITEVEGRRLALSNLEKVLYPATGFTKGELLHYYATTADVLLPHLRGRAVSFLRYPDGPEGQVFFSKNVPPGTPDWVTTAEVPRSEGPARMVLVQDLASLMWAANLVTEFHTHQWLVDSPEEADRLVLDLDPGAPATIVECCEVALWLRERLASDGIEAYPKTAGSKGLHLLAAVRGASSDQVSEYAKRLAVEAEGALPGLALHRMTRSLRPGKVFVDWSQNAARKTTAAPYTLRARERPWVSAPVTWGEVEGCGGPGMLAFEAEDVVARLQEYGDLLAPLVEGGAASRLP
>CP032427.1|AYC38599.1|3274550_3275606_-|Non-homologous-end-joining-protein-Ku
MRSIWNGAISFGLVSIPIKLVNATESHSISFRQIHTEDGGRVRYRKVCELEDREITQSEIGKGYEDADGTIIPITDEDLAHLPLPTAKTIEIVAFVPADRIDPLQMDAAYYLQAGGAPAAKPYTLLREALKRSNKVAIAKFALRGRERLGMLRVVEDAIALHGLLWPDEVRAPEGLAPDTKVTVSDKELDLADALMDTLGEIDLDDLHDEYREALEEVVAAKAAGEAPPESPEPARSGKVLDLMAALEKSVREAKESRGEEPGEVRQLPQRKSARAAPKQTGGKKSTTKAAPAKKTAAAKKSTAKTAAKSTARSSQGTKKTASASASASAKKATSAKKTAAKKTTARKRSA
>CP032427.1|AYC38598.1|3274004_3274505_+|Peptidyl-prolyl-cis-trans-isomerase-cyp18
MSRVELTTNFGRIVLELADAEAPKTVENFLTYVGNGHYDGTIFHRVINGFMVQGGGFTADMVQKPTLAPVPNEADNGLKNTAYTVAMARTSDPHSATAQFFINVSDNEFLNFTAKSPNGWGYTVFGKVVEGQDVVDQIKGVRTGSSRGHGDVPTEPVVIESAKVVD
>CP032427.1|AYC38597.1|3273488_3273935_+|hypothetical-protein
MSDGYGEHGQRGRYEEEGGSVRGAFEVILDGSREPVFPSVTDAAVVGGRRIRRRRTAVSGAAGVLVAAVLAAGVMAALPGGAGPDRSSVPMAPSSGRPSGSPSTSPSDSASGSPTGTAGPVAPRPSTVPSKQTAVPTPSALAPSGSVP
>CP032427.1|AYC38596.1|3272970_3273480_+|RNA-polymerase-sigma-E-factor
MREAVREREFREFAEARQGQLRRSAYLLCGDWHQAQDLTQTTLMKLYASWGRVRRDGNVEAYARTILTRAFIDQYRKRSWREEPVDEVPEPASAEPVTPELRLVMQAALMELPPRYRAVLVLRFWEDWSVEQTAEALRVTPGTVKSQSARGLVRLRGLVEGLAGETSGR
>CP032427.1|AYC38595.1|3272370_3272784_+|hypothetical-protein
MTAGTGLGTVEGRWLGTTVGTGLGAVPGTDGTGLGAVPGTDGTGLGTVAGTDGTGLGWDGLLVATGDGTGDGTVEGATDGTGDGTAEGALDGAVDGTAVGFVVGEPVAAPATAAQPATATAPPATTDIRRRRVGRTA
>CP032427.1|AYC38594.1|3271178_3272276_+|hypothetical-protein
MRERTGTAESTGTAESRHRPAVKRSEDGRDAFFDNVKYLAIVLVAVGHAWEPLREGSRAVSALYLLVYAFHMPAFIVVSGYFSRNFDASPGRLRRLVGGLVVPYVVFETAYTFFTRWTDQDPERPVSLLDPLYLTWFLVALFVWRLTTPLWRRVRQPVAVALAVAMLATLTPSIGDDLDLQRVLQFLPYFVLGLCLRPEHFQLVRRRAVRIAAGPVFVVALALAYWAVQRMSGAWFYHRDSAQELGGPAWSGPVMTLVTFGCSLVLVACFLALVPGRRTWFTVLGAGTLYGYLLHGFLVQGARFWGWYGPAWVHRPLGVVLVALVAGAVVTVLCAPPVRRALRYVVEPELRWAFRREATVQPARG
>CP032427.1|AYC38593.1|3270520_3271111_+|hypothetical-protein
MLEAALSPEWGDRYHSFDAHWSEGEALASMRNGSGDEYSVVFSAAGVFVRGFDHESPMSPYAEDGPWPGVLDEVPEVFKACVEEPAFCDDGMPRVTACIWREVGDDGWRTGAIDFPDGQTDDPDGADYLFQLLVDRSPEAFQEWAEDYYEVPVDLDAVRHVMSLRPLTEDVVRALNPDIGLADLADDIAQSGYPMR
>CP032427.1|AYC38592.1|3269416_3270397_+|hypothetical-protein
MPTLDQLAMFTGDFALDTDRAWQMVLDFTQTPGHLVRTRSAGARTRLRRRTPSPYRCSMADEQSPPRLFPNRFPEAVDSRPGVPQDDCDCFSQVHGSPPGATTSFHADVQDTTAPGWLKLLEMIDAAVADGREEFRPLPELSPEERRQVVTLPASIGRLTAVRSLVLYGSNLVRIPPEIGGMTNLEEFDPYTSRRLHWFPYEITRCARLVRSTVSTRSIYGNYKYRPPFPRLLPPGDTVPDIERDLQNLDPARWGTTAARTCSVCDGPVPVTGPHQAWLSRTVATDVLPLLVNACSPACLDALPTGAKGHLPAPHRGGAIEQPPPS
>CP032427.1|AYC38591.1|3268844_3269321_-|hypothetical-protein
MTAMSGQVWVSLISLGGVVLGGSLSYLVQHRTQLSAERAEQQRQQIALSEARRGERLALLERFIEVGAEAERSAFSRPSDWEDTDAWFLTTRDVMNRLWVAERLIRIQFPLPVHDAARAYFLDLNRTVWEGLPDGESVRDYLEANRLAFLDAARAVMG
>CP032427.1|AYC38601.1|3276858_3277662_-|hypothetical-protein
MSGLRVVPTWRHGQERLYVCLTDGRNIAWYDREAARINLLSEDRREDVLDALGPFLTGPVAVGPPPVPTPAELARLTLHPDDDLAPNRPGEALQIALDREPGPAHRFRRDARRRALEAEQTVGETLDRLDGAGWHTLHSVPLPGGDRVHHLVIGPGGLYAVHALYARKQRVTIADPMVTLGRRDPHPLLHRVRADAARASYALTAEVHPVLALVSPSAITLPLPPRNLRITTDTDLPDLSREGGVLKPADVEALHALARDRRTWGRV
>CP032427.1|AYC38602.1|3277775_3278309_+|hypothetical-protein
MAQGLGEALLRTRRKQPDVPAPERAWNEIVPGLWMGGHEFQGLSGQREFAVVRDEFDVVQTLLRLPGHGPDPGVEHHVWPIPDGPLDGTQLAGVMRLAQAANDALDEGRKVLVRCYHGYNRSGLVVAHALVRRGRTVDEAIRLIRGRRSPWALHNDLFVEYLQAGLSTARLLEELTE
>CP032427.1|AYC38603.1|3278400_3279156_+|hypothetical-protein
MPPARRRSRTARTARTAAVAALLLAGAAGCGDAGDLVGAGSTPTAISPDRLWPQLTPASSPAFEVGEVESEVVAGISVPHDDIRRVDPVAVVRAEIKEDRADYERGGYVETLRRMADCGKQGVAGRECPVLEPYYRDLTGDGRADLTLGFRQLPGNVTAVRVYTVEKHRLVRVMHWEDAVSGVELAGHSVIIRSPSEVAGYEYRLQWTWDPQQKSMLLTHDEMLRSGPDGPSPRPSASGERRSPVPSASAR
>CP032427.1|AYC38604.1|3279152_3280382_+|Sensor-protein-CseC
MRLPRWSGTLAVKAAVFITVMCCALAALLGVLVHVSVTNQTVGEARGLALSRLRDATAAYEAGDTLKWDAWVDPPDLPGSLRALAVAGDRGTMVGVHGGRPTMWAAGPVDGRRALAVEVDYSQGARTIAGLDRAILWSSGLAITATLLVGAFAVTRVTRRLDTTARVARRISAGDLDARVDDPLTKDASRPQDEVAAVAAALDTMAASLQGKLLSEQRFTADVAHELRTPLTGLHAAAELLPPGRPTELVRDRVGALRTLTEDLLEISRLDTGRETVELDTEPLGALAERVVRASGTETEVVVRRDVAVETDRRRLERVLGNLVANAHRHGRGPVSLTVDGPVVTVRDHGDGFPAYLVEHGPQRFRTEGGARGHGLGLTIAVGQAEVLGARLSFSNAVEGGAVATLVLG
>CP032427.1|AYC38605.1|3280536_3280935_+|hypothetical-protein
MSLRSRFSIAVTAGALAASALAVPAAAADDWDGAASTSHQSQNPNQGQGQSHTNQRLSRGVVTASSLALRSAPNRGGQIIRWAERGEVVSIFCRTNGQNVQGDRQWYLLTDGTWAWGSARYIRVLGTAPRWC
>CP032427.1|AYC38606.1|3280987_3282352_+|putative-FtsW-like-protein
MTKAGTTVAPPADTPASAVRLPRRRGIELALIVLAVLLCVYGYCAVGLARHGTVPPGAAGYGAGLGVLALLAHLAVRLRAPDADPLLLPIGVLLNGLGLVLIYRLDLETPGDRAAPTQLVWSTVGVALFIVVVLALRDHRVLQRYAYVCVAAALVLLTLPILFPSVNGARIWIRVAGFSIQPGEFAKVLLAVFFAAYLAANRNALAFAGRRFWKLQLPTGRVLGPVLAIWLISVGVLVLERDLGTSLLFFGLFVVLLYVATGLTGWIALGLLLAAVGAFAVGWLEPHVHTRVEDWLHPFASIEAGLGPNQLAQSLFSFAAGGVLGTGLGLGHSVLIGFAAKSDFILATAGEELGLAGLSAIFLLYGLLVERGYRAGLSLRDPFGRLLATGLASIVALQVFVIAGGVGGLIPLTGMAMPFLAQGGSSVVTNWAIVALLIRVSDSARRQYDGTEAP
>CP032427.1|AYC38607.1|3282348_3283833_+|Penicillin-binding-protein-A
MSTHGPGMARYIRHAACFCALLLVALLVNATRVQVFEAAAHDENPANRREVIARYGLRRGDILVDGRPVTGSRDTGEQLRYERTYANGPLFAPVTGFASQEYGTTLLEHTEDGVLSGSDPLLTPFALWNDFTRRRNPGGDVVTTIDGAAQQAAFRGLAGRKGAVAAVEPTTGRILALVSSPSYDPEVLSGNDPGVGRSWARLNADREKPMLNRAVRQTYPPGSTFKVVTAAAALDAGVVTDLDAPTDSPAPYRLPGTRTSLTNESDGCEDLSLREAFRWSCNTVFAKLGVDVGVGDMTATAHAFGFNDDALRIPFSVARSTFDPTVDKAQLALSSIGQYNTRATPLQMAMVSAAVANGGQLRTPYLVERTTTSRGTTVATAGPRPGRQVMYPSTAAQLRELMTQVVTEGTGTNAAIPGATVGGKTGTAQHGIGNAGTPYAWFVSWAQGDRDMEPKVAVAVVVEDAAADRGEITGGGVAAPIARAVMEAVLRSKE
>CP032427.1|AYC38608.1|3283952_3284459_+|hypothetical-protein
MTQAAPYQLAQVNIGRLKAPLDSAQLKDFVDNLDPVNADADAADGFVWRLEDETGDATDIAVFGDEWLIINMSVWRDAEALKAYMYQGRHREMLARRREFFERVQEAMVALWWVPAGHRPTVTEAESRLLHLRANGPTPYAFTLRTLFPAGADEPVAGTVPEELGCPA
>CP032427.1|AYC38609.1|3284470_3285097_-|hypothetical-protein
MVLGVVGGVIGTGVAGLAVGAVEVASGVGYPKAEYTLAVPEKLVGGRYELDEDSSGSAESRGIEKEADGEWGVYKDLKTVIGQYSSAGDDSKGTLVVSGLYGRFKYPGRVRKDLMEGAAGEGSRVAVPAKNFHPAGADGITVTCEVLVQKGERMKVTLPVCGWADGNTGGWVTEVITAKASQDPAEADLSGLATLTAQVRSEMRKPIR
>CP032427.1|AYC38610.1|3285241_3286354_-|hypothetical-protein
MPTFDLYTTDPGDPHWQVPATGRARFSWEYDDGRERLLALYQKGKDKQWDGQKRIDWDLEVDPHDPLGTPDESISLYGTKYWTKFTDHDKGELRKHLASWQFSQFLHGEQGAMVCAARIVESVPDLDAKLYSATQVMDEARHAEIYGRFLHEKIGMLYPINDNLQSLLGDTLRDARWDMPYLGMQVLIEGLALAAFGMIRDTTDKPLPKQILAYVMQDEARHVAFGRMALRDYYRQLSDAELREREEFVIEGCHLMRDRLRGVEVLENFGIPSAEAEEYSERSEFLALFRRLLFSRIVPCVKDIGLWGPRLQQAYVDMGVFEMGDSNLDLLMTQDEEIAEKLDAERFAAEERERVAEVMEAVEEGATHLA

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Crispr_ID: CP032427_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_10

3426246-3426359

Orphan

Consensus_repeat	Method
GGGCCGGGAGGCGGGTTGCCTTCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_10

>merge|CP032427|10|3426246-3426359|CRISPRCasFinder
GGGGCCGGGGGCGTGGTGCCTTCGGCGGTGGGGCCGGGAGGCGGGTTGCCTTCGGCTGTGGGGCCGGCGGCGTGGGCCTTCGGCGGTTGGGCCGGGAGGCGGGTTGCCTTCGGC

>CP032427|10|9|3426246-3426359|CRISPRCasFinder
GGGGCCGGGGGCGTGGTGCCTTCGGC	GGTGGGGCCGGGAGGCGGGTTGCCTTCGGCTGTGGGGCCGGCGGCGTGGGCCTTCGGCGGTT
GGGCCGGGAGGCGGGTTGCCTTCGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC38748.1\|3438742_3438961_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC38737.1\|3423206_3424385_-\|putative-adenylyltransferase/sulfurtransferase-MoeZ	unknown	unknown	gnl\|CDD\|181156
CP032427.1\|AYC38743.1\|3431827_3432826_-\|Glutathione-transport-system-permease-protein-GsiC	unknown	unknown	gnl\|CDD\|223674
CP032427.1\|AYC38735.1\|3419848_3421393_+\|Carboxylesterase-A	unknown	unknown	gnl\|CDD\|312032
CP032427.1\|AYC38733.1\|3416458_3416845_-\|DNA-base-flipping-protein	unknown	unknown	gnl\|CDD\|226219
CP032427.1\|AYC38746.1\|3435917_3437447_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371483
CP032427.1\|AYC38741.1\|3428098_3429979_-\|N-acetyl-alpha-D-glucosaminyl-L-malate-synthase	unknown	unknown	gnl\|CDD\|340841
CP032427.1\|AYC38749.1\|3439157_3439799_+\|putative-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP032427.1\|AYC38738.1\|3424448_3425198_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371915
CP032427.1\|AYC38734.1\|3417031_3419779_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377103
CP032427.1\|AYC38736.1\|3421575_3423135_+\|Carboxylesterase-A	unknown	unknown	gnl\|CDD\|312032
CP032427.1\|AYC38744.1\|3432822_3433863_-\|Glutathione-transport-system-permease-protein-GsiD	unknown	unknown	gnl\|CDD\|224094
CP032427.1\|AYC38730.1\|3407538_3408966_-\|Succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|349929
CP032427.1\|AYC38731.1\|3408952_3412549_-\|ATP-dependent-DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|223288
CP032427.1\|AYC38745.1\|3433867_3435586_-\|Periplasmic-oligopeptide-binding-protein	unknown	unknown	gnl\|CDD\|173871
CP032427.1\|AYC38742.1\|3430064_3431831_-\|putative-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
CP032427.1\|AYC38740.1\|3426662_3428102_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC38732.1\|3412658_3415943_-\|ATP-dependent-DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|223288
CP032427.1\|AYC38739.1\|3425185_3426145_-\|dTDP-6-deoxy-L-talose-4-dehydrogenase-(NAD(P)(+))	unknown	unknown	gnl\|CDD\|366597
CP032427.1\|AYC38747.1\|3437455_3438511_-\|Pimeloyl-[acyl-carrier-protein]-methyl-ester-esterase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC38737.1\|3423206_3424385_-\|putative-adenylyltransferase/sulfurtransferase-MoeZ	gnl\|CDD\|181156	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated.	0
CP032427.1\|AYC38743.1\|3431827_3432826_-\|Glutathione-transport-system-permease-protein-GsiC	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.75785e-92
CP032427.1\|AYC38735.1\|3419848_3421393_+\|Carboxylesterase-A	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	7.0815e-36
CP032427.1\|AYC38733.1\|3416458_3416845_-\|DNA-base-flipping-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.0244e-18
CP032427.1\|AYC38746.1\|3435917_3437447_-\|hypothetical-protein	gnl\|CDD\|371483	pfam11350, DUF3152, Protein of unknown function (DUF3152). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	9.03918e-73
CP032427.1\|AYC38741.1\|3428098_3429979_-\|N-acetyl-alpha-D-glucosaminyl-L-malate-synthase	gnl\|CDD\|340841	cd03813, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes.	5.47666e-171
CP032427.1\|AYC38749.1\|3439157_3439799_+\|putative-HTH-type-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.01065e-16
CP032427.1\|AYC38738.1\|3424448_3425198_-\|hypothetical-protein	gnl\|CDD\|371915	pfam12138, Spherulin4, Spherulation-specific family 4. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.	5.09704e-24
CP032427.1\|AYC38734.1\|3417031_3419779_+\|hypothetical-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	1.66153e-29
CP032427.1\|AYC38736.1\|3421575_3423135_+\|Carboxylesterase-A	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	1.12477e-35
CP032427.1\|AYC38730.1\|3407538_3408966_-\|Succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|349929	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0
CP032427.1\|AYC38731.1\|3408952_3412549_-\|ATP-dependent-DNA-helicase-PcrA	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	4.05207e-82
CP032427.1\|AYC38745.1\|3433867_3435586_-\|Periplasmic-oligopeptide-binding-protein	gnl\|CDD\|173871	cd08506, PBP2_clavulanate_OppA2, The substrate-binding domain of an oligopeptide binding protein (OppA2) from the biosynthesis pathway of the beta-lactamase inhibitor clavulanic acid contains the type 2 periplasmic binding fold. Clavulanic acid (CA), a clinically important beta-lactamase inhibitor, is one of a family of clavams produced as secondary metabolites by fermentation of Streptomyces clavuligeru. The biosynthesis of CA proceeds via multiple steps from the precursors, glyceraldehyde-3-phosphate and arginine. CA possesses a characteristic (3R,5R) stereochemistry essential for reaction with penicillin-binding proteins and beta-lactamases. Two genes (oppA1 and oppA2) in the clavulanic acid gene cluster encode oligopeptide-binding proteins that are required for CA biosynthesis. OppA1/2 is involved in the binding and transport of peptides across the cell membrane of Streptomyces clavuligerus. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
CP032427.1\|AYC38742.1\|3430064_3431831_-\|putative-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
CP032427.1\|AYC38744.1\|3432822_3433863_-\|Glutathione-transport-system-permease-protein-GsiD	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.67621e-75
CP032427.1\|AYC38732.1\|3412658_3415943_-\|ATP-dependent-DNA-helicase-PcrA	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	1.7561e-51
CP032427.1\|AYC38739.1\|3425185_3426145_-\|dTDP-6-deoxy-L-talose-4-dehydrogenase-(NAD(P)(+))	gnl\|CDD\|366597	pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.	4.2822e-40
CP032427.1\|AYC38747.1\|3437455_3438511_-\|Pimeloyl-[acyl-carrier-protein]-methyl-ester-esterase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.94362e-29

>CP032427.1|AYC38739.1|3425185_3426145_-|dTDP-6-deoxy-L-talose-4-dehydrogenase-(NAD(P)(+))
MRVLLIGANGYLGRFVADRLLADPAVQLTALGRGDDADVRFDLASGSPGALTRFLDAVHPGVVVNCAGATRGGARELTRHNTVAVATVCEALRRSGCGARLVQIGCGAEYGPSQPGSSTAEDAVPRPGGPYGVSKLAATELVLGSGLDAVVLRVFSPAGPGTPAGSPLGRLAEAMRRAMQSGDGELKLGGLGAQRDFVDVRDVARAVHAASLSAAQGVINIGSGRAVRLRDAAAVLARVAGYGGALHELDGPPGPLRASIGHPRSESDHAAPVAYPYPDGCGSWQQADVRTARDRLGWRPRINLEESLADIWMEAACRI
>CP032427.1|AYC38738.1|3424448_3425198_-|hypothetical-protein
MPHLTSTKSSTPSTELHTGLGVPGFAHPLVAPAEWAELTRPGTPLHWTVLNIADGPGARPDPHCLEAAGRLRNAGVRVLGHLDTTYGARTFGELISEGQRYLDWYQVDGFLLDRCPTGRAALPEIRRAVTTLRALRDDAHIVFGHGTHPYPGYAENADQLITFSGPWSDYRWSQVAEWTADYPPETFCHLVHGLPGPHLEEALRIARWQGASTIWFTDRTDRGGRVDPWETMPGYWDEIVSRIGTGVSE
>CP032427.1|AYC38737.1|3423206_3424385_-|putative-adenylyltransferase/sulfurtransferase-MoeZ
MSLPPLVEPAAELTVDEVRRYSRHLIIPDVGMDGQKRLKNAKVLCVGAGGLGSPALMYLAAAGVGTLGIVEFDEVDESNLQRQIIHSQADIGRSKAESARDSVLGINPYVNVVLHEERLEADNVMDIFSQYDLIVDGTDNFATRYLVNDACVLLNKPYVWGSIYRFDGQASVFWSEHGPCYRCLYPEPPPPGMVPSCAEGGVLGVLCASIGSIQVTEAIKVLTGTGEPLVGRLMIYDALEMQYRQVKVRKDPNCAVCGENPTVTELIDYEAFCGVVSEEAQEAAAGSTITPKQLKEWIDDGENIEIIDVREINEYEIVSIPGAKLIPKNEFLMGTALESLPQDKKIVLHCKTGVRSAEVLAVLKSAGFSDAVHVGGGVIGWVNQIEPDKPVY
>CP032427.1|AYC38736.1|3421575_3423135_+|Carboxylesterase-A
MGRFARWAGVAAAAALLATGCSGGSSAGSSGGGEGVERTGGTTPATRDAKAPPASLTSQQLDWRRCKATGDFSPPGNDWRCTTLKTPLDWSKPDGETIDLALIRTKARGGDRIGSLLFDFGGPGLTGVGTLPAYAATASLLRERYDLVSWDPRGVGASEGVRCRGDKEVQAAESVDATPDTPAEERAYLRDATDFARGCEKDAGKLLAHVSTTDTARDMDLMRQVLGDDRLYYFGISYGTQLGGVYAHLFPHRVGRLVLDAAVDPSADAVGHRKNQARGFQRALDNYLKSTGQDPARGTRRIADLLERIDAKPLPTFSGRKLTQVLAFTGIVYPLYRQDSWPSLTSALRTAEQGDGSELLALADGYNERDPSGHYGLLPQSQRVISCLDDRQRPTLAQAKGLLPEFERISPVFGPFLGWDAAGWCHDWPVAGQFETPEVSAPGAAPVLVVGNTGDPATPYEGARKMADELGKGVGVELTWEGQGHTAYGNGSDCVDSTVNAYLLKGTVPKDGKVCAQGR
>CP032427.1|AYC38735.1|3419848_3421393_+|Carboxylesterase-A
MPNPPRPRVAALTATALLLSCTLAGCGGDSHDEDLPAQKLSWKDCQAPSRAEGGGEAPSPLPGGAEWQCATLKAPRDWAKPKGDTIDLALIRAKTSGPKDRRIGSLVFNFGGPGGSGVTTLPAFGTEYAKLRTRYDLVSFDPRGVGRSAPVECLNDPQLDYYFEQDWTPDDSAERTALLNNTKEFNAACEDNSKKMLPHVRTTDAARDMDLMRQVLGDDKLYYFGISYGTELGGVYAHLFPEHVGRAVFDAVVDPTQNSEQGSLGQAEGFQLALDNFAEDCTSKTEDCPVGDTAQDVKDRIAKLLADLDRKPIPGIGQRLLTQTAATNGIAQALYSKDFWEYLVEGLQQAYDGDGRVLMLLSDSLNGRSENGEYSNLTAANIAINCADDKPRYTAADVERRLPQFRAASPLFGDFLAWSMVSCTDWAVPGAADHPDVSAAGSAPILVVGNTGDPATPYEGARKMVEALGPGVGVELTYKGQGHGAYGSKNSCVQKAVDGYLLNGRVPAAGTVCS
>CP032427.1|AYC38734.1|3417031_3419779_+|hypothetical-protein
MKPQGVHPEDAESTSAASSRPDAAEGDDGRAPGTDADVAAEETHSEEAEETHAEEVEGDEPLLPARVHRPSDLMRLLAGVLAVVVLLAIAAFAHGTTSGLEQDINKGTGQAPDLLIKIAGLASSIAILLVPVAFAIERLIKRDGLRIADGVLAAVLAHGVTLATDLWVAKAAPESIQEALTQPSPGDIHALTDPVHGYLAPVIAYMTAVGMSRRPRWRAVLWMVLTLDAFSMLVTGYTTPFSIILTVLIGWTVAYGTLYAVGSPNVRPTGQTLMAGLRTVGFHPAGAAREETPETAENGDRGRRYFVTLEDGPPLDVTVVDREQQAQGFFYRVWRNLTLRGFATRSSLQSLRQALEQEALLAYAAIAAGANAPKLIATSELGPDAVMLVYEHTGGRTLESLSEDEITDELLRNTWRQVQALQSRRIAHRRLAGDAILVDRSGSVILTDLRGGEIAASTLLLRMDVAQLVTTLGLLAGAERAVASGVEILGPDAVADCLPMLQPIALTRSTRATLRRLARERAQREREAVLEASRLAKQARLDEAAQDAGPVLDKPDKKAERAEARAEKRAIDEALEEAREEDLLSQIRNQVLLIRPQAPVEPARLERVKPRTLISVFAGAIGAYFLLTQLTHIEFGPLIENAEWGWVAAAVLFSACSYFAAAMALLGFVPERVGFLRTVAAQVAGSFVKIVAPAAVGGVALNTRFLQRQGVRPGLAVASVGASQLFGLGCHILMLLSFGYLTGTEKTPSLSPSRTVIAGLLTVAVLVLVVTSVPFLRKFVVTRVRSLFAGVVPRMLDVLQRPQKLVTGIGGMLLLTACFVMCLDASIRAFGQEGTSLSIASVAVVFLAGNALGSAAPTPGGVGAVEATLTVGLIAVGLPKEVAAPAVLLFRLLTLWLPVLPGWLAFNHLSRKGAL
>CP032427.1|AYC38733.1|3416458_3416845_-|DNA-base-flipping-protein
MSEQSLPRDAHPEYADTLPEYAERVLDVAERIPPGRVMTYGDVAEWLEEGGPRQVGRVMALYGSPVPWWRVVRADGVLLPGHELEALNRYRAEGTPLKEASRAAEGHLPRLDMRRARWDGDDRAEGHT
>CP032427.1|AYC38732.1|3412658_3415943_-|ATP-dependent-DNA-helicase-PcrA
MLVLTFSRKAAVELRDRMALRVGAARAPQATTFHSFCYALVRAHQDSELFVEPLRLLSGPEQDVTVRELLAGQPDLERLGLAHVRWPDELRACLTTRGFADEVRAVLARSRELGLGPGALDAFARRIGRPDWRAAAAFLAEYLDVLDLQGVLDYAELVHRAVLLARRPEVAEQLAAQYDAVFVDEYQDTDPAQVRLLDALAGGGRTLVAFGDPDQSIYAFRGADVNGILDFPYAFPRADGRPAPVEVLRTSRRSGAALLAATRLVTQRMPLTRLPAEKVRAHRELAPVREGGRVEVFTYPTPGTELDNIADILRRAHLEDGVPWGEMAVLVRAGSRTIPTVRRALTAAGVPLDIDGDDLALRHEPAVAPLLTALRAVATAETEGSAVRHQETAPEDAAASDGQGASGDAGATDGQGASENAGASDEQGAVDEQGAADEAGASDEQGADEEAGAADRQGADEAPAPVASWLDTETALTLLTSPLAGMDAADLRRLGRALRDEERAGGNALPPPSDELLARALAEPERLAAHDPAYARGAQRLGALLGKARARLAGGGSAEEALWDLWDGTPWPGRLERAARRGGAAGRNADRDLDAVCALFATAARAEERTGGRGALNFLEEIDAEDIAADTLTRRAVRPDAVRLMTAHRSKGLQWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGVEPKDVTGRPRRPLSVSALVAELRATTVDPRVSDTLREAAARRLARLAALADDDGRPLVPAAHPYRWWGMFEPTESKVPLRNRDQPVVLSGSALDQLANTCALQWFLGREVKADAPATVAQGFGNVVHVLADEVASGRTPADLDVLMERLDSVWNALAFDAPWKSAQEKENARVALERFLKWHVDSNGVRTGRTPVASEHDFDVTLEAGEVEVRIRGQMDRVEADGEGRAYVVDFKTGKQPVSSADVERHPQLAVYQLAVREGAVDEAFDGVRPEPGGAELVQLRQGAPKRDGGETLPKVQAQEPLEGEWVGDLLATAAGKVLDERFTPSAGQHCSHCAFRASCSAQPEGRHVVE
>CP032427.1|AYC38731.1|3408952_3412549_-|ATP-dependent-DNA-helicase-PcrA
MAARITDPDQLKELLGIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRKALVRAGVTDPDVIDPDNPPGEPVISTYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLREAPGPYPALTRSFADLVSDLLTLDAELSEHLVRPERLRAYDAELLLTLQGAKLTNDTLRKVPEAAAARRELADLVVRYRAAKRERDLLDFGDQIALSARLAGIPEVGRLLREEFKVVLLDEYQDTSVAQRVLLAGLFGGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHPDGRPATRQALSENRRSGGRLLDLANGLAEPLRAMHAGVEALRPAPGAERDGVVRCALLPTHAEEIDWLADSIAHLVRTGKEPGEIAVLCRTATDFAEIQGALVERDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANAALVRLLTGPRWRIGPRDLALLGRRARRLVSYARVDADDDPDRRLAEAVEGVDPAEVISLADALETFLETPLHSDEDDDGLPFSPDARVRFARLAAELRDLRRSLADPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASFAAGDQEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTDTFPSAKGREKWTAQSKVLPHALRGDAETLPDIASWDARGMKAFHEAMKDHQRTEELRLGYVTFTRPRSLLLGSGHWWGPTQKKPRGPSDFLQDLHDHCAAGHGEIEAWADEPAEDEENPALHSRTEDQVWPLPLDDKALARRRAAAQTVLDHLEELAGLADHTDPHPAAVHDPDTYDDPDWPPPPDDEAPYEDDGVPYDGEAPYDDVVEQDSPSDWDAWSTERPAVPHQATAPEAPPAPHRPTAPETHPARHRATPEELGAPVRPHPRERESLTPEEARTIASWDRDLDALTGELLRARAAVTDVPLPASLTASQVLRLAADPDGLAQELARPMPRPPQPAARQGTRFHAWVEARFEALTLPMLEPDDLPGSDAEIADERDLETLKDAFERSEYAHRTPYRVETPFQLAIAGRVVRGRIDAVYRQTDGETTTYEIVDWKTSRTRTADPLQLAVYRLAWAERQGVPVESVTAAFLYVRTGDVVRPRNLPGRAALERLLTQEPDGSAPANCEEPPTEDVGAGR
>CP032427.1|AYC38730.1|3407538_3408966_-|Succinyl-diaminopimelate-desuccinylase
MRADRLMTMSPTPDSAVRSYIQQHRAAFLDDLAEWLRIPSVSAQPDHGPDVRRSADWLAAKLRETGFPTAEVWETPGAPAVFAEWPAEDPGAPTVLVYGHHDVQPAAREDGWDSDPFEPVVRDDRLYARGAADDKGQVFFHTLGVRAHLAATGRTAPAVHLKLLIEGEEESGSPHFRALVEERRERLAADAVIVSDTGMWDEHTPTVCTGMRGLAECEIVLHGPDQDIHSGSFGGAVPNPATAVARLVAALHDEHARVAIPGFYDGVVELTDRERELFAELPFDEERWLRTAKSYATLGEAGHTTLERVWARPTAEVNGIGGGYQGPGSKTVVPSSAMVKLSFRLVAGQDPDHIEKAVRDWAAAQVPAGIRQEITFGAATRPCLTPLDHPALQSVVRAMGRAFGRPIRFTREGGSGPAADLQELLGAPVLFLGISVPSDGWHAPNEKVELDLLLKGVETSAYLWGDLGEHFSHAP
>CP032427.1|AYC38740.1|3426662_3428102_-|hypothetical-protein
MSDTDTTGALGEREAAEAGGELGEHEAVDAGGELGEDEVSDAGAELGERGVSGAVGELGNPDAPADASPDSAERPERAAPASSGQAVPEADASTPPAPTPRAPEIATGRTSTATTSSARRSAADPVKALMHRHRELCERAVDPLEIAAGLEAHGVTDRTAVRFRHRDVFSLAEEMYARIPRDGETPPSPAVDRTPRPRAAWALLTLLPGVLCAATVAGIRLTDGRSRLVTALVGALVISFAVRAALSRGPLGAPVRARTTTPSTWTYWLLAYAALGDGLLGAAVTGGPDALPTGAADAPWPVATAPLLALTLSCAPAAWAAHLFRARARRKLTASRGLEDFAASVRPLLLGTFALYLCALTALLALTAAALDEPAPYAQTLALGALLFLARLLTTHGFTHAPVVVLIAATTAQATALATTFASRLPGCAFLATPVDALVDLWGAAGIQTLSCGIGALALLIHATRKLTRASAHAQEEPC
>CP032427.1|AYC38741.1|3428098_3429979_-|N-acetyl-alpha-D-glucosaminyl-L-malate-synthase
MDNRPSRHRLVRIRSSRCEPPGQRRLLIREIGGALVRIGLLTEGGYPYVSGDARLWCDRLVRGLEQHEFDIYALSRSEHQEDEGWVPLPPQVDRVITAPLWTAEDDGVVYGRRARRRFAESYGELAAALCEGGVGEASGTGSTGSMGSVGSVGSTGSAKGSGEASGVEADRFASALYGLAELARDEGGLVGALRSETAVRALERACRAPGARQTAREARVPDLLAVAAHLERALRPLSLDWYEDDGLGAVDVCHAASGGPAALPGLLAHHFCGVPLLVTEYGVRLRTHYLADSDSPPAVRALLAAFHGRLATETYRRAAVVTPGNTHARRWQERCGADREKIRTVYPGMEAGHFAEVGESAECVDPDTLVWVGRVEPAKDLISLLHAFAEIRKEEPKTRLRIVGAPSGPEGAAYLGHCKALAAQLFPDEAEGLHAVGDNPVSFEEIGGPELPSAADAYGSGAVTVLSSVVEGFPISLVEAMFCARATVSTDVGAVVEVIGGTGLVVPPRNPKALAEACLTLLRDPERRERLGAAARARALELFTVEQNIAAFHSIYLDIVSRTPVRRVVLDGTGEPLPFAAPAEAHVPGRWTERSTRVVARGGPGWAAGPPVRATPPFAATEGAPG
>CP032427.1|AYC38742.1|3430064_3431831_-|putative-ABC-transporter-ATP-binding-protein
MSLVHVTELTVEFGDLRAVDGLSFTLAPGAALALVGESGSGKSTVASALLGLHRGTGARVSGSVGVAGVDVQQASDDELRRLRGAKAAMVFQDPLSSLDPYYAIGDQIAEVYRVHTRVSRRTARARAVEVLDRVGIPDAVRRSRSRPHEFSGGMRQRALIAMALACEPELLIADEPTTALDVTVQAQILDLLHALRQETGMGLLLVTHDVGVAAESVDDVLVMRHGRTVEHGPVGTVLGAPAQAYTRELLAAVPRVDAPRVTSGASGAGVSGGSAVGASGGSGGGASGGSGASGGSGGGAFGASGEGHSAVAAEAAPEVVLEPAPEVVLEAVGLRREFGRGKRAFAAVDGVSLTVRRGETLGVVGESGSGKTTLGRMLVGLLEPTAGQVRHDGHARVGVNPAVQMVFQDPVSSLNPRRSVGESIADPLRARGERDEQRIRGRVRELLERVGLEGAHYDRYPHEFSGGQRQRVGIARALAADPRVIVCDEPVSALDVTTQAQVVALLGELQRELGLALVFVAHDLAVVRQVSDRVAVMRRGRIVEEGPADEVYDSPRDAYTKQLLTAVPALDPEIAARRRAERGAVAVS
>CP032427.1|AYC38743.1|3431827_3432826_-|Glutathione-transport-system-permease-protein-GsiC
MSGFTGFAVRRTVSAVLTLLALSVIIYVVFYATPGNVAQITCGPRCSPEQVHQVAQQLRLDDPLYLRYWHFLQGIVVGHDYSTGTSVEHCPAPCLGLSYQSDQQVTQIILNKLPVSLSLVVGGMVLWLLLGVGTGVLSAWRRGRLSERALTGVTLAGVATPVFVIGLVLMIVVCGQLELLPFPEYVPFSDDPEQWMWGLLLPWITLALGEAAYFARLTRASMLETLAEDHIRTFRAYGVGERSIVGRHALRGALAPIIALNANDFGSAVGGAVLIESLFGLPGIGQELVHAVTVVDLPVVVGMVLVIGFFVVLANAVADVLYAVADRRVVLA
>CP032427.1|AYC38744.1|3432822_3433863_-|Glutathione-transport-system-permease-protein-GsiD
MSEALVATEIPGATAPGVSGARQFWRRLRAQRAAMVAAGVVALLVLVALAAPLLTALEGQDPTTYHPSLVDSARGGVPIGSFGGVSGDHWLGVEPQTGRDLFARLVYGARVSLGVALGATAVQVLLGVVVGVAAALGNRWVDQLLSRVTDIIVAMPLMIMALALLAIVPENFPRPILVALVIGFVAWGTIGKIARAQTLTLKELDYVAAARLSGWGTWRIARRELLPGLAAPVITYAALMVPANISIEASLSFLGVGVKPPTASWGQMLSSANVWYQAAPQYLLLPAAALFVTVLALTVLGDGVRTALDPRAASRLRVGTGRKREARSDLSGAAEPGPANAKEAIS
>CP032427.1|AYC38745.1|3433867_3435586_-|Periplasmic-oligopeptide-binding-protein
MRQPSLTKRRVAAVSVSLVLAAGAAACGPEDNDAKSSGGDSTPHKGGTLTVLNSDPQSDFDPARLYTSGGGNVPSLVFRTLTTRNRESGAEGTKVVPDLATDTGRPNKDATVWTYTLKKGLKYEDGTAITSADVKYGIERSFAPELSGGAPYLRDWLVGASDYQGPYKDKKGLPAIETPDARTIVFHLNKPEGEFPYLATQTQFTPVPKAKDTGTKYEEHPVSSGPYKVVKNENDGETLLLERNTYWSAATDPERKAYPDKIDVKSGLDSSVINQRLSASQGADAAAVTTDTNLGPAELAKVTGDKELAARVGTGHFGYTNYIAFNPTVKPFDNAKVRQAISYAVDRSSVVNAAGGSALAEAATTFLPNQKSFGYEPYDLFPAGATGNAAKAKELLKEAGYPNGLTVTLTHDNAQNFKTSPEIATAIQDALKKAGITVKLQGLEDNNYSDTIHDVKKEPGFFLSAWGADWPSGGPFLAPIFDGRQIVKDGANFNSGLLNDKSVNAEIDAINKLTDLDAAAKRWGALDKKIGEQALTVPLFHPVYKRLVGKDIRNVVISDWTGVLDISQVAVK
>CP032427.1|AYC38746.1|3435917_3437447_-|hypothetical-protein
MGRHSRRGPAPKKGSDNSSSSDGGGAGRTSPGPGAGAEVPGGRARNLSQAGAPAPGGAGRRVPAQGGPRLPEGTPAHGFPRLPEGTPARGLPRLPDGTPAHGFPRIADSTPAQGTPRARGGHPEQRESGGGWGELDGRGPGGQAATGPAGALPRQRQGQRQQSAGTRQGPRQDYLDAFTEGHGPRRGAATSVAALPSDPYGSYGSVTDWPDDTRGGVGTGVGSGAASGSGSDEMPPLDAPPSAKGGKGRTFTGVAAAAVVTVLAVVVAGQVTGDRDTAAGTSAATDQARDARDSVTAGQPTPSGSPSVATLTYEQAMGTKYPLSAKLDGSGKFDAVPGVDKAPGKGQKYTYRVDVEQGLGLDGALFAEAVQKTLNDDRSWAHGGARTFERVYTGKPDFVITLASPGTTADWCAKSGLDTTEDNVSCDSAATERVMINAYRWAQGSTTYGDRIHAYRQMLINHEVGHRLGYSHVTCDKNGELAPVMQQQTKFLDHDGIHCRPNPWPYPGS
>CP032427.1|AYC38747.1|3437455_3438511_-|Pimeloyl-[acyl-carrier-protein]-methyl-ester-esterase
MSSTEVPFVPPANVLPKVSPVRVGEGERLRSVGLQGITLTVRSRPPAREGLPPALYVHGLGGSSQNWSALMEQLEGDVDGEALDLPGFGDSPPPDDGNYSVTAHARAVIRFLDASGRGPVHLFGNSLGGAVSTRVAAVRPDLVRTLTLVSPALPEIRVQRTAVPTGLLALPGVAGLFTRYSRNWTAEQRVRGVTALCYGDPGRVTPEGFQHAVEEMERRLQLPYFWDAMARSARGLVNAYTLGGQHALWRQAERVLAPTLLVYGGKDQLVGFRMAQKAARTFRDSRLLTLPEAGHVAMMEYPETVAGAFRDFVSDKGESTSGGSGPVRGSVGRSEAGTASGGGADATAVGS
>CP032427.1|AYC38748.1|3438742_3438961_+|hypothetical-protein
MAHDPTDPEAFEEESDDVELDVEAPEVDAAEQHTDIAPDRDDPLTGVDPGLASEADLIEQARVVSIDEDDYR
>CP032427.1|AYC38749.1|3439157_3439799_+|putative-HTH-type-transcriptional-regulator
MTAIEQTEAARPRGTRLPRRARRNQLLGAAQEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKLDLYLALLDQHCESLIQAVRSALASTTDNKQRVRATMDAYFAYVEDDGGAFRLVFESDLTNEPAVRERVDKVTNECAEAIRDVIAEDTGLSPAEAMLLASGLGGLAQVVARSWLHSDRSVPRDQAVQLLTSLAWRGIAGFPLHGTDHH

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Crispr_ID: CP032427_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_11

4672026-4672109

Orphan

Consensus_repeat	Method
GGCCCCGCCGGGATGATCCGCCGG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP032427_11

>merge|CP032427|11|4672026-4672109|CRISPRCasFinder
GGCCCCGCCGGGATGATCCGCCGGACCCCAGCCAGCCGCCGATCCGCCGCGCTGCGGCCGGGCCCCGCCGGGATGATCCGCCGG

>CP032427|11|10|4672026-4672109|CRISPRCasFinder
GGCCCCGCCGGGATGATCCGCCGG	ACCCCAGCCAGCCGCCGATCCGCCGCGCTGCGGCCG
GGCCCCGCCGGGATGATCCGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC39881.1\|4670649_4671300_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379508
CP032427.1\|AYC39878.1\|4667865_4669068_-\|Sensor-histidine-kinase-LiaS	unknown	unknown	gnl\|CDD\|226951
CP032427.1\|AYC39887.1\|4674994_4676662_-\|Oligo-1,6-glucosidase	unknown	unknown	gnl\|CDD\|200471
CP032427.1\|AYC39877.1\|4667124_4667784_-\|Oxygen-regulatory-protein-NreC	unknown	unknown	gnl\|CDD\|225107
CP032427.1\|AYC39873.1\|4664000_4664987_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC39891.1\|4678628_4678976_-\|HTH-type-transcriptional-regulator-NmtR	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
CP032427.1\|AYC39890.1\|4678315_4678582_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC39888.1\|4676970_4677915_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
CP032427.1\|AYC39886.1\|4674212_4674998_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379301
CP032427.1\|AYC39875.1\|4665698_4666082_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC39892.1\|4679273_4680398_+\|High-affinity-nickel-transport-protein	unknown	unknown	gnl\|CDD\|225911
CP032427.1\|AYC39885.1\|4673346_4674021_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC39883.1\|4672134_4672617_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC39879.1\|4669258_4669417_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC39889.1\|4678079_4678319_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC39882.1\|4671448_4671820_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC39884.1\|4672766_4673243_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC39874.1\|4664983_4665613_-\|ECF-RNA-polymerase-sigma-factor-SigE	unknown	unknown	gnl\|CDD\|224511
CP032427.1\|AYC39876.1\|4666115_4667018_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376806
CP032427.1\|AYC39880.1\|4669444_4670539_-\|D-xylose-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|380650

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC39881.1\|4670649_4671300_-\|hypothetical-protein	gnl\|CDD\|379508	pfam14219, DUF4328, Domain of unknown function (DUF4328). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 218 and 342 amino acids in length.	5.91282e-21
CP032427.1\|AYC39878.1\|4667865_4669068_-\|Sensor-histidine-kinase-LiaS	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.76326e-33
CP032427.1\|AYC39887.1\|4674994_4676662_-\|Oligo-1,6-glucosidase	gnl\|CDD\|200471	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
CP032427.1\|AYC39877.1\|4667124_4667784_-\|Oxygen-regulatory-protein-NreC	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.56033e-45
CP032427.1\|AYC39891.1\|4678628_4678976_-\|HTH-type-transcriptional-regulator-NmtR	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	9.42974e-13
CP032427.1\|AYC39888.1\|4676970_4677915_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	6.99797e-06
CP032427.1\|AYC39874.1\|4664983_4665613_-\|ECF-RNA-polymerase-sigma-factor-SigE	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	4.47069e-32
CP032427.1\|AYC39886.1\|4674212_4674998_+\|hypothetical-protein	gnl\|CDD\|379301	pfam13628, DUF4142, Domain of unknown function (DUF4142). This is a bacterial family of unknown function.	5.06088e-11
CP032427.1\|AYC39876.1\|4666115_4667018_-\|hypothetical-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.43157e-09
CP032427.1\|AYC39892.1\|4679273_4680398_+\|High-affinity-nickel-transport-protein	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	3.54815e-129
CP032427.1\|AYC39880.1\|4669444_4670539_-\|D-xylose-binding-periplasmic-protein	gnl\|CDD\|380650	cd19995, PBP1_ABC_xylose_binding-like, periplasmic xylose-like sugar-binding component of the ABC-type transport systems. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	3.94997e-87

>CP032427.1|AYC39882.1|4671448_4671820_+|hypothetical-protein
MSTTTFVLAATSSEVLNVIAAFVGGLFIAGALVWAVQFGMRVQDRESPRPRVEEQPRLPETGPVRELREMREPDELSDATDGQERLMPHQLHHSGTRTGKDQHRKRWLPGSSGGFGSGGLGHV
>CP032427.1|AYC39881.1|4670649_4671300_-|hypothetical-protein
MNENAVRPALRPARGSARLAVAGLGLAGAAWALRAVWQVRLAVAGEPAAGPPDQGEGRHRPLNALENSYHLVSTAGDLLVLLCAALFIGWLWRMRDNARALSGEPPRYAGIWVYASWIVPVVNLWFPRGIVADIHHKSAPGRKLPAVVNVWWALWLVGLVTGVGLTYDDSTDEIIARAYHGVTGLLLADLAVVGAAVAAVLMVRTLTDTQHAHIGD
>CP032427.1|AYC39880.1|4669444_4670539_-|D-xylose-binding-periplasmic-protein
MRTVPSVVAVCASALLLSSCGVVGSDTAVSPKKGDDITLGLLLPDRDTSRFDRFDYPLIKQEVATLTHNKGKVSYANAGASAKRQSEQFQQMVADKVDVILVDAVDAAAIEPAVQKAKDAGIPVIAYDRLAQGPIDAYVSHDNELVGEVQGRSIVQALGDKAESSKIVMMNGSPADPNTALFEKGAHSELDGKVVIAKQYDTREWLPSVAKAHMKEAIASVGLNNIAAVYSANDDMAGAVIDELKEAGATRIPPVTGQDATLAAVQRVVSGEQYMTVYKSFLLEATNAAQIAVYKIQGRDLQFDALIRDKVDSPTQNDIPSLLVPVVALTKDNIEQTVIKDGVYTAQQICTAPYAADCAAIGLK
>CP032427.1|AYC39879.1|4669258_4669417_+|hypothetical-protein
MNLLLWPLLVLSVLGNAIASFTPADTAVHLAFGTVTALTATTLAVRRLRTGP
>CP032427.1|AYC39878.1|4667865_4669068_-|Sensor-histidine-kinase-LiaS
MATADLKGLVVGTATTAAAALGQLVSGLGTAALAPFVLLWLALPKGVRVLHALADMERARLTRWGPEVIAPPRPPARLRAALTDPTTRRELRWLLRHLAVGLPLGMLGFVLPLLAVRDTAFPLYWRLAPTDATATSIGIGVAHSWPDALAVCLLGVGWIAIILGLAPALARLQAGPGRRLLSAGPDADLSLRVAELTATRAAALDAHAAELRRIERSLHDGTQNRIVTVTVLLGAARRMVARDPAGADELLERAQSAAEQALAELRTVSRSILPPVLADRGLAGALTGLAAESPVPCTLDVEMPRRCAASTEATAYFVVAEALTNIAKHSGASRATVTVRVPGPRLLLRVMDDGRGGADEHGGSGLTGIRRRVAAHDGSLRLTSPAGGPTVVEVELPCGT
>CP032427.1|AYC39877.1|4667124_4667784_-|Oxygen-regulatory-protein-NreC
MRIVIAEDDPLLREGLALLLRAEGLDVVATADTADGALDAVDTHEPDVAILDVRMPPTHTDEGVRAAVEARRRRPGLAVLVLSAYVEQSFATELLTGGVGGLGYLLKERVGRVEEFLDALHRVASGGTAIDPEVVAQLFTRSHQDARLARLSPRERDVLALMAEGLGNSAVAERLFVTDGAVHKHIRSIFAKLDLAPTDQVDRRVAAVLRYLEDARRTR
>CP032427.1|AYC39876.1|4666115_4667018_-|hypothetical-protein
MSVQAPVGIENPPVPHEPAGLRGSIRRNPLTWFFTLAFALSWAAWTPYVLSRNGLDVWQFTFPGGRAGSQLTGVLPGAYLGPIASALLVTGITEGRAGLRTWRRRMLRFKVSWRWYLVVLLSVPAALTVASAVLAGRGPALPSAMILAAYLPGLLIQMITTGLAEEPGWREFAMPRMQQRHGPLTATLVVGVLWGCWHLPLFLTEWGGGPHVSWTVPVQFVVMTIAFSFVMTWVFNRSGESMPLVMLLHTGVNNYLSLAWTDMFPSLSEHDGARALLLAATAAALVLLIATRGRLGLPRR
>CP032427.1|AYC39875.1|4665698_4666082_+|hypothetical-protein
MEQREVMQNVVGILTEALEMRRQVREHPDRQASLTGAVSALLVETLPRIHLPADASGHAAADAVVEELGPAIASIANCFAFAFVQLAEVHDEGRTDTSAAEVLRRISLRFASGTGSGSGSGSGTGTD
>CP032427.1|AYC39874.1|4664983_4665613_-|ECF-RNA-polymerase-sigma-factor-SigE
MRETETAEPERARIRAGDRAAFGELYDRYARTVYNHALRLTGNWAEAEEAMSETFLAAWRTRETVEPEGGSLKPWLLGIATHKAYNVNRGLRRRLAFLARSPQPRPVEDFAEESAGRIDDARRLAAVHRALGRLSRQDREVFALCVSAGLDYRQAAEALGVPVGTVRSRLSRARARLARLSAETEPPPAHGGMESEAALAALFLKEETR
>CP032427.1|AYC39873.1|4664000_4664987_-|hypothetical-protein
MNEAEELAATAEWDLPPERHRHFKDVLMQRIDDDKQAAQKPSVRRRFARPAVLVPLVSAALAGALLTTLTTGGHTPAPEAPSASVTLGRIATAAMASDTIRVRDDQFVYVRTLDRSNKGSFTGPVELGALHTEEHWTAQDPGPLRITGWLRASGKDAIMPGQLIPVESSDPVPVGVAHPTYRWLASLPTDPDALLSRLYKEARPVDGESRDQAVFSLIGDLIGGTVMPPATMAAFYRAAARLPGVREIPDAVDATGRHGIAITLDDTGFATRDEWIFDKETLALLGSRFYITDPDRGITTETLAGTSAVIERAVVDRKGEVPARAASR
>CP032427.1|AYC39883.1|4672134_4672617_-|hypothetical-protein
MTQQPHATQPSAGAQQQASAGMSATAPGPGFTPTEAAWASGGVVFAGVLMLMNGVLAIFQGISLLAEDDVWARVNDYVYKVSLTGWGVILLCLGVVAAVTGAFILRGAGWARMTGIFLASLSMLAQFLFLPYAPVWSVIMIGLDFFAIWALAVYRPAMRG
>CP032427.1|AYC39884.1|4672766_4673243_+|hypothetical-protein
MTRWTTPALLAALALTGLTGLTGLTACSDGDSPSSVASKVASAASRAGDAVSSATAEAGRRFDDIRNGVDAKDDVRLAAPTTAADGRTTVEVTATNRADSAKSFAVQVDFTGQDGKLLDVVVVTVSDVPAGGTGKATARSTHALSGKATAKVSRAVRY
>CP032427.1|AYC39885.1|4673346_4674021_-|hypothetical-protein
MSMPQQRSLPVLPYRKPTKGRDYWVLDDVLPDVDAVRERCLAKDDWVKGHPYTSETWPGLRTMPGLEPAELARVEGLVRKATGAPRLWVQQAPGGGTLNHNCVQVVGEGESEPRPHTDSRALCRYAAVLYLNPGVPKNCGTSFYRQSMPGGRLGGNVVQAPHNNLVEALGTRFVAPDAFEEDVRVPHKYNRLLLYNANLVHSATGYFGGTLAEKRMTAVFFWMA
>CP032427.1|AYC39886.1|4674212_4674998_+|hypothetical-protein
MPLSRNAMGTLFVGGALTLTLGALAYPSMLGVSQASTAQDRIIAQTQWGPLTEQDRDFVVKVRAAGLWEYPLGQIAQTKGTTPEVKEAGKHLIDGHAALDAACRKIAPMLNITIPNVASPQQVGFVNTIDSSSGQQFDSNFANILRVTHGSIFNAIAKIRSTTKNSLVRSLADMANDTVLDHMTVMEKTGFVNFDQALFMQTTPPKLPATDLTPPAPQPGAPMVVLTPPPNPTSTPLGIPGENNANGGGAAPAAGASPTVG
>CP032427.1|AYC39887.1|4674994_4676662_-|Oligo-1,6-glucosidase
MISRTTTPDLSGKDPDWWRQAVVYQVYPRSFADADGDGLGDIRGVTARLGHLAALGADALWLSPFYPSELADGGYDVADYRDVDPRLGSLDDFDAMVAEAHRLGLKVIVDLVPNHTSHRHVWFQEALAAGPGSASRARYVFRDGRGAHGELPPTDWQSVFGGSAWRRVPDGQWYLHLFAPEQPDLDWSHEEVREDFRTTLRFWSDRGVDGFRVDVAHALVKDLTEPLRDLGDLPGVAEEALDHLPPGSHPYWDRDEVHEIYRDWRTILDSYTPPRTAVAEAWVPGARRALYARADELGQAFNFEYLQTPWDADALRQVITDSLATARAAHASATWVLSNHDVVRHASRLVLPPGTDANAWLLAGGRAPAVDLAQGLRRARAATLLMLALPGSSYVYQGEELGLPEVADLPFEVLQDPIWEQTGRVRKGRDGCRVPLPWTTTGPSYGFGAGGAWLPQPEWFGEYAVEAQDGTEGSTLELYRTALRLRRKLLQGEDLTWSDTTPAGVLDFVRHDGWRCVTNLSETAVPLPEGEVLLVSGPSANGLLGPDTTVWLGQG
>CP032427.1|AYC39888.1|4676970_4677915_+|hypothetical-protein
MSIARRVTLRRLLGTGAATLAFSAALASVASASDCPGGKGWGDGGHYKPGTGAGSKTETDRCEFSLDGKNFYASVKVDDQNLKPGDDGKVHVKVRAAGDATTCTASLASYLAHGPTFATSGEQVFHDFDSVTVKAGAVDTLDVAIPDAGCFGQVDLYRGNTKFDGKLDAKDGFPHGDLPKGPDHPVIKDKLIAAWNGGTKDCTTTETTPPATPPATETTPPASESTPPASESTPPASESTPPASETPGTDSPTPSASESTSTPGAPTPNGGGGDNLAETGASSNTPLIAGGAAVLLAGGAGIVLATRRRKATRS
>CP032427.1|AYC39889.1|4678079_4678319_+|hypothetical-protein
MRSFPDDLARTQREWSAMYRRLAEHPGRTELRRRLYRLSTELYFHPHWERRRPRPAEWWDLRDLARSAAPEDTTDRLDR
>CP032427.1|AYC39890.1|4678315_4678582_+|hypothetical-protein
MTDRSAGPYTADDPEDMSGPIRVIVHPPSPTGGRRVRVDGEILGLAHNLADVAEFLRRAGLEIDAAEVARSSWIDWRGVGPERWGPEE
>CP032427.1|AYC39891.1|4678628_4678976_-|HTH-type-transcriptional-regulator-NmtR
MHLVPADRADRRTIDGHRVCDAIAAIGDPDDVRTWSDRFALLADPNRLSLLLALHRTGPLAVSDLAIASGMNDPAVSQALRLLRAAGVVAGDKEGRVVRYRVVDEAVRGLLKQVS
>CP032427.1|AYC39892.1|4679273_4680398_+|High-affinity-nickel-transport-protein
MTEPALSKATPPATGAATGAATGFRWRREDTVKTAGLMAVITALHVVAFGILFLLVVPAHYEVGTKAFGVGLGITAYTLGMRHAFDADHIAAIDNTTRKLMADGKRPVSVGFWFALGHSSVVVLLAALIAGGTQLAGKVMNEGSSTHQVLGFLGTTISGTFLYLIAALNLVALVGILKVFRAMRAGSYDEKQLEQHLDSRGFMNRILGRLTKSITRPGQMFPLGFLFGLGFDTATEVTLMVMAGSGAAAGLPWYAILCLPLLFAAGMSLFDTLDGTFMNFAYQWAFSNPVRKVFYNLAITGLSIAVAFFIGTIELVGVLHDKFDLTDALTTWIAEIDLDNVGYVIVGLFVVVWAAAIAYWRLAKVEQRWGVSGS

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Crispr_ID: CP032427_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_12

4966380-4966489

Orphan

Consensus_repeat	Method
GCACCCCGACCGCGCCCCGATCGCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP032427_12

>merge|CP032427|12|4966380-4966489|CRISPRCasFinder
ACGCCCTGGCCGCACCCCGACCGCGCCCCGATCGCACTCACGGCACCCCGACCGCGCCCCGATCGCACTCACGGCACCCCGACCGCACCCCGATCGCACCCACCGCACCC

>CP032427|12|11|4966380-4966489|CRISPRCasFinder
ACGCCCTGGCCGCACCCCGACCGCGC	CCCGATCGCACTCACG
GCACCCCGACCGCGCCCCGATCGCAC	TCACGGCACCCCGACC
GCACCCCGATCGCACCCACCGCACCC

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC40137.1\|4964864_4965290_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40131.1\|4960253_4961675_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367293
CP032427.1\|AYC40142.1\|4970627_4972850_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379080
CP032427.1\|AYC40132.1\|4961967_4962372_+\|Blasticidin-S-deaminase	unknown	unknown	gnl\|CDD\|235875
CP032427.1\|AYC40139.1\|4966622_4967363_+\|putative-transcriptional-regulatory-protein-TcrX	unknown	unknown	gnl\|CDD\|223816
CP032427.1\|AYC40144.1\|4974588_4975389_+\|Tetracycline-repressor-protein-class-B-from-transposon-Tn10	unknown	unknown	gnl\|CDD\|367243
CP032427.1\|AYC40147.1\|4976560_4977382_-\|Protein-YceI	unknown	unknown	gnl\|CDD\|377274
CP032427.1\|AYC40145.1\|4975425_4975887_-\|Putative-pyridoxine/pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|274679
CP032427.1\|AYC40141.1\|4969005_4970628_+\|Bifunctional-apolipoprotein-N-acyltransferase/polyprenol-monophosphomannose-synthase	unknown	unknown	gnl\|CDD\|133031
CP032427.1\|AYC40129.1\|4955592_4957608_+\|Mannan-endo-1,4-beta-mannosidase	unknown	unknown	gnl\|CDD\|366944
CP032427.1\|AYC40148.1\|4977474_4980009_-\|Multidrug-resistance-protein-3	unknown	unknown	gnl\|CDD\|340868
CP032427.1\|AYC40134.1\|4962829_4963342_+\|Nudix-hydrolase	unknown	unknown	gnl\|CDD\|185291
CP032427.1\|AYC40146.1\|4975891_4976473_-\|putative-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP032427.1\|AYC40130.1\|4958096_4959854_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40135.1\|4963424_4964018_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377229
CP032427.1\|AYC40138.1\|4965389_4966265_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378524
CP032427.1\|AYC40140.1\|4967359_4968991_+\|putative-sensor-histidine-kinase-TcrY	unknown	unknown	gnl\|CDD\|223715
CP032427.1\|AYC40136.1\|4964274_4964778_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197670
CP032427.1\|AYC40143.1\|4972972_4974460_+\|Antiseptic-resistance-protein	unknown	unknown	gnl\|CDD\|184957
CP032427.1\|AYC40133.1\|4962394_4962610_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC40131.1\|4960253_4961675_+\|hypothetical-protein	gnl\|CDD\|367293	pfam03008, DUF234, Archaea bacterial proteins of unknown function.	4.63383e-11
CP032427.1\|AYC40140.1\|4967359_4968991_+\|putative-sensor-histidine-kinase-TcrY	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.44093e-64
CP032427.1\|AYC40132.1\|4961967_4962372_+\|Blasticidin-S-deaminase	gnl\|CDD\|235875	PRK06848, PRK06848, cytidine deaminase.	9.61862e-25
CP032427.1\|AYC40142.1\|4970627_4972850_+\|hypothetical-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	6.24713e-33
CP032427.1\|AYC40144.1\|4974588_4975389_+\|Tetracycline-repressor-protein-class-B-from-transposon-Tn10	gnl\|CDD\|367243	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain.	2.3484e-12
CP032427.1\|AYC40147.1\|4976560_4977382_-\|Protein-YceI	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	6.04215e-54
CP032427.1\|AYC40146.1\|4975891_4976473_-\|putative-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.52001e-16
CP032427.1\|AYC40145.1\|4975425_4975887_-\|Putative-pyridoxine/pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	3.25451e-38
CP032427.1\|AYC40129.1\|4955592_4957608_+\|Mannan-endo-1,4-beta-mannosidase	gnl\|CDD\|366944	pfam02156, Glyco_hydro_26, Glycosyl hydrolase family 26.	5.17792e-44
CP032427.1\|AYC40134.1\|4962829_4963342_+\|Nudix-hydrolase	gnl\|CDD\|185291	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional.	6.53346e-20
CP032427.1\|AYC40148.1\|4977474_4980009_-\|Multidrug-resistance-protein-3	gnl\|CDD\|340868	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters. This family includes Fusarium sporotrichioides trichothecene efflux pump (TRI12), which may play a role in F. sporotrichioides self-protection against trichothecenes. TRI12 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.0282e-55
CP032427.1\|AYC40141.1\|4969005_4970628_+\|Bifunctional-apolipoprotein-N-acyltransferase/polyprenol-monophosphomannose-synthase	gnl\|CDD\|133031	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.	2.26903e-80
CP032427.1\|AYC40135.1\|4963424_4964018_-\|hypothetical-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	7.9339e-06
CP032427.1\|AYC40138.1\|4965389_4966265_+\|hypothetical-protein	gnl\|CDD\|378524	pfam10977, DUF2797, Protein of unknown function (DUF2797). This family of proteins has no known function.	3.12564e-52
CP032427.1\|AYC40136.1\|4964274_4964778_-\|hypothetical-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.39734e-16
CP032427.1\|AYC40143.1\|4972972_4974460_+\|Antiseptic-resistance-protein	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	6.73623e-69
CP032427.1\|AYC40139.1\|4966622_4967363_+\|putative-transcriptional-regulatory-protein-TcrX	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.85109e-83

>CP032427.1|AYC40138.1|4965389_4966265_+|hypothetical-protein
MAQAWKCAGLRWSADGPVLRWDGGRRSALTWGKRVAFGVAEGGVRTCVGARGHACAARVEVSGRSTGARCEECARLDRAHSVAADTLADDPRPYRVYLAWFGPGMVKVGITAYERGSARLLEQGAVCFSWLGTGPLMAARRTEELLRAALAVPDRVPYGDKRAVRSSLPASAAERAAEIAELHARARTLGGWPESLERAPYEPVDHVEVFGLTGLPAAAGEVSGLVAGGSVGGRLLAAAGPDLHLETAGKGVVVLDTRLMTGWDLVPAEGEENTVPVREFRQARGMQDGLF
>CP032427.1|AYC40137.1|4964864_4965290_+|hypothetical-protein
MSAHQYDEGHTVAGWTGFGIATVGTSVAGLGVCLVSGALIVGGLAVVGVSVLVTWALHLSGWGKPPGRRPHEEWGMRVRDSSAREGHEECVGCRIAGRRRGRLSTTAVGAGVEAGAGAGTGVVAGAGARVAAEPVAAESAS
>CP032427.1|AYC40136.1|4964274_4964778_-|hypothetical-protein
MPAEPHPAEPRPAATAAQALEAMDFFIATAHLGQQEMAQRLGVNVTDLLSFAYVLRAGENLLTAGDIAEQAHVTTGAVTGILNRLERGGYVTRVPDPTDRRRVRVAARPEAVAKVVALYQPYYDRLDAVFAQYSADEIAVLHDWFSRTTNLALAYIEELRAKDAGGE
>CP032427.1|AYC40135.1|4963424_4964018_-|hypothetical-protein
MEPQTADPTKSPSPSPSPSPSPSSSPLPSPPLPPSLPPSQAAPGPLASFVRFVVCGGGVGVLSSFAVPMVAMTMPWAVANAVITVVSTLLCTELHALFTFGTGRRAGLRRHLQSSGSAAAAYAMTSAAMFLLHTAQSAPTLLTEQTVYLTASAMAGVGRFLVLRLYVFTTTRAPHPAIHRTTLPRPLLPRQAVSTAC
>CP032427.1|AYC40134.1|4962829_4963342_+|Nudix-hydrolase
MVEFMGELVDRVDENDLVIGVVDRAEAIEKRWLHRVATTVCRDPLGRILVHRRSYEMSRFPGQYNWLIGGAAEAGESYEQAAARELGEELGVFGVPLRPVLRFLCEGEISPYWLGVHEAVVSGVLVPDPDEIAWYGWFGEDELLEAVGRGEFVSDGVEALRRYRDGQRRR
>CP032427.1|AYC40133.1|4962394_4962610_-|hypothetical-protein
MNPLMTAASATFATELASETAIASESELTPLITAWDLAHPSAADPDWRHLLDEIAHPRTTAAFHGLAATAV
>CP032427.1|AYC40132.1|4961967_4962372_+|Blasticidin-S-deaminase
MTHSVDHELVQAAAEVARTRCRGDNHTVAAAGRARDGRIVTAVNAYHFTGGPCAELVLIGAPGTQGVYELDTIVAVGDRDRGVIPPCGRCRQALLDYFPRIGVIVGEGDRIRTVPVTALLPESYVWADHQLDPE
>CP032427.1|AYC40131.1|4960253_4961675_+|hypothetical-protein
MHRFIGRERELTLLGNALQAVRDAVGSARPGQCILMRGRRRVGKSSLVEEFLRRTGTPYLFFTAAGGTAEDELTELLDAVARSTLPERELFSEETPQQWNAALRLLAEILPDDTPSVVVIDEVPYLTDRIDAFEGMLQRAWDRLLSRKPVLLLLVGSDLSMMEALNSYDRPFHQRGREMVVGPLNPADIGDMLGVSPAAAFDATLITGGLPLICAEWRAGADVWEFLRDSLDNPISALLVSAERSLAAEFPPQAMSREVLRAIGSGERTFTNIARAAGGIAHTTLTRATDVLTEKRVVAAELPLSLRPSKERRYRVADPYLRFWLAFLDPHMAEIERMRGDLTLSRIKEQWTSWRGRAIEPLVRESLARLLPDEFLPAAPAVGGYWTRSNDVEIDLVGADRQPVARELLFLGSVKWLENSAFDSHDLAALQKHRAAVTDEPVPLVAVSRSGTRCSGLQAAYGPDDLLTAWRRG
>CP032427.1|AYC40130.1|4958096_4959854_-|hypothetical-protein
MNRTAHRRGRLALLLACAIVAALPAAAAADETPIDPALPAPTLPSGADCGSDSSPTWRSVSSPPPAGMTVSIGVPRPTVNGVTYQGAVHAWDVDGSQTADGSVPGQPVPVQSVYVPLPLADGHTYGWHASTYDGTAYSNPTEPCYFRVDASAPLTPVVTNPDFPPMGSPGTPTKAAGQPTTFSFSSSDPLPSGCAEAGAPDCQASGLNHFEYALDREPGIGAARVPADAGGTGSLTTALSWGVHTLYVVGVDAAGNQSQEPAAYTFTVPWQLPPPSRPTLDLTAPETAGRGAQLTVSGQLSAAPYSSGEVVHVLKSDLAHPTGVALPDAPLSTDGTFRIADVPQVGGANTYAVTYPGDSTHQAVDASATVQVSRNAAAVSITTDAPSYGYGATARITAHLGTTHNGRTLAIYAQPYGGRKTLIETGTVDSHGNLATTYKLTRKTTFTAAFAGDYRYAPATAATTASAYAKVSESLSGYYGSTHYGGLLYRVYHHTAKAKLNITVTPDKAGQCVKFQIQRYYSDAWHTQTTSSCHALSTTSTSYATVTLTNAVSSKFRMRAEYVHSTKDTGNLSTWGAWQYFTVRK
>CP032427.1|AYC40129.1|4955592_4957608_+|Mannan-endo-1,4-beta-mannosidase
MPRSPLNRRAFILLGATVAAAAGARTSVAAATTSPTALAGAPTPVRIVDDRATPATRALFAYLKRQQGKGILFGHQHDLTYGFTFTTPDGKASDTRAAVGDYPAVFGWDTLILDGDERPGAEGGTEAENIAALSRCIRLGDARGGINTLSAHLPNFVTGKDFYDTTGRVVGQILPGGAKHAAFNAFLDRVAKAVKGARRPDGTAIPIVFRPFHENNGAWFWWGAGHTTSAEFTELFRYTVEYLRDTRGVHNLLYAYSPNSSFGGDPTGYLKSYPGDGFVDILGYDSYDEGAGPTPWLDSVVKDLAMVVRLANERDKVPAFTEFGEGGTEVRNPQWFTQLLQAVKADPLARRMTYMLTWANFGGTKRAYVPYPGHPLLPDFVAYHQDPYTLFAADLHGVYSARTTAVRNAPFLHLVTPTDRQRATASQTTVRVRVTPAKASRVTYSVNGGRPGRLRLDADGFYSGAWSIDPALRNNPSVTLTVSAQVDGRTLTDSAVVLLGEVAPLPAGWVDDFEGYAGDDTALSEAYTHVNSHTLTLSADHKSSGSYGLAYAYDFTGAEYTGTGKPVDADWSAFTSLALWLRGDGSANGGALQIVAGGVDFWYQVPLSDTSGQEIRAPFSEFTPAPWDTAHAGAVLDASHLTKVTAFNLYLVHASDAATKGIVYVDNIRAE
>CP032427.1|AYC40139.1|4966622_4967363_+|putative-transcriptional-regulatory-protein-TcrX
MTTTSPQGRTELLRPDGSPVRVLVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTARDFRPDAVVLDMMLPDMDGLAVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSESVLVVGDLTLDEDSHEVSRAGDNIHLTATEFELLRFLMRNPRRVLSKAQILDRVWSYDFGGQANVVELYISYLRRKIDAGREPMIHTRRGAGYLIKPAAS
>CP032427.1|AYC40140.1|4967359_4968991_+|putative-sensor-histidine-kinase-TcrY
MSGRRRPRAQKRAGRAGKPRTLRTRLVVASVVLIAVVCSVIGTVTTLALRSHLYDQLSGKLNEAASRAAPREPPQGQLGNGGNDRDRPVGQGNRPSSPANFVIGPGPDGTIAAKVEGGRITDAKRGVKSGSDQNFEMTAKSLTAAQIKVLSSVPKDNSQHKVELPGIGDYLVRYTSNDTSAYYVAVPTKDVDATVDTLILVEVSVTAAGLGAAVIAGYVLVGLATRPLRKVAHTATRVSELPLHTGEVNLSERVPEAECDPHTEVGQVGSALNRMLDHVHGALHARQQSEMRVRQFVADASHELRTPLASIRGYAELTRRGREAVGPDTRHALGRIESEAGRMTLLVEDLLLLARLDAGRPLQFEQTDLIPLVVDTISDARAAGMDHNWRLDLPDEPALVSGDAARLQQVLINLLGNARKHTPEGTTVTARVQRRGPWMCVEVEDNGQGIPPDLLPHVFERFARGDSSRSRASGSTGLGLAIVQAVATAHGGAVTVDSVPGRTVFTLHLPAVGPATPRPAPETNWQSHSQAQHSAAIWVQQGA
>CP032427.1|AYC40141.1|4969005_4970628_+|Bifunctional-apolipoprotein-N-acyltransferase/polyprenol-monophosphomannose-synthase
MRTDSSPGTLPAREHLPAGDAGTPVLDVVIPVYNEEKDLQPCVLRLHEHLRRTFPYAFRITIADNASTDTTPLVSRRLEAEIPEVRAFRLEQKGRGRALRTVWSASDAPVLAYMDVDLSTDLNALLPLVAPLISGHSDLAIGSRLARSSRVVRGPKREFISRAYNLILRGSLHARFSDAQCGFKAIRRDVAQVLLPLVEDTGWFFDTEMLVIAERAGLRIHEVPVDWVDDPDSTVHIVKTATEDIKGVWRVGKALATGALPLDRITRPFGDDPRDRDVQDVPKGLARQLVGFCVVGGLSTLFYLLLYSVFRQFCGSQIANALALLVSAVANTAANRRLTFGVRGRGGAVRHQAQGLVVFGIGLALTSGSLAALDAATSDPAHSTELAVLIAANLAATVLRFLLFRAWVFPERDENPSRSTVVTTHTPTTTPATTRSATPAYGTQQPYASQQPYAPLQPYAPLPTRPTANHYATAPHTPYNRQSPYNRQSPYDRQPPYNRQSQYTGQPPYTPQSPYDATVPSQPARSSDTGTDTGTDPRNS
>CP032427.1|AYC40142.1|4970627_4972850_+|hypothetical-protein
MTTQTDHPTRQGSGWGPAVTVTDVQDVAPPAPESGEPQQPLARRMWRGRPEDPRWARPAFWGLLLATAALYFYNLSASGYANSFYSAAVQAGTKSWKAMFFGSLDAGNAITVDKPSAFLWPMEIAARIFGLNSWTILGPEVLMGVGTVAVVYASVRRRFSPGAGLLAGAVLALTPVAALMFRFNNPDAMLALLMALACYFVVRAVEDGRTRWLVWAGVAIGFAFLAKTLQAFLILPALAFVYAAVGPHKLKKRIGQLALATVALVVSGGWWVAIVELWPASSRPYIGGSQNNSFLELTFGYNGLGRLNGEETGSVGGGGGGSTGQWGETGWNRMFNSEIGSQISWLLPAALILLVAGLVATRKLKRTSATRGAFLVWGGSLLITLVVFSFMAGIFHQYYTIALAPYIAAVVGMGAGVLWEKRAETWASLTLAAAMVAAAAWGYVLLNRTPDYLPWLKWLVLVGGLVAALGLIFVARLGRQLALGVAALGIVAALAGPTAYTLSTVNSAHTGSIPTAGPAGASMMGFGGGGGRGGGPGGGGMGGFGGQNQQNGSANGNSNTQGQGQGQSQQGQGFPGGGMPGQNGTTGNGTTQGNGTTRNQLGGMGEGGGMGGGGGAGGLLNGASVSSEAKKLLQADADDYTWAAAAIGAQNAASYQLASDESVMAIGGFNGTDPSPTLAQFKKYVEEGRIHYFISSGTGGGMGGSSSGTSSQITSWVEANFKKVTVGSATFYDLTQKASS
>CP032427.1|AYC40143.1|4972972_4974460_+|Antiseptic-resistance-protein
MTASTTAPGTVTQGHPQRWLILGVICLAQLTVLLDNTILNVAIPSLTRELGAETSDIQWMINAYSLVQSGLLLTAGSAADRYGRKKMLAAGLVLFGLGSLVAGLADSTAQLIAARAGMGVGGALLMTTTLAVAMQIFAPEEQPRAIGIWAAVNSLGFATGPLLGGFMLNHFWWGAIFLINLPVAALALLAVVALVPESKNPQGNRPDLLGALLSTIGMTSLVFAIISGPEHGWTSGRVLTPAAVAVVVLAAFAWWENRIPHPMLDMHFFRDRRFTGAVAGAVLITFGMGGSLFLLTQHMQFVLGYGPLEAGLRTAPLALMIVALNFTGLSAKWSARLGTPLSIGLGMAVMAAGLASIATLTDHGYPGTLLGLVLIGAGAAVASPAMAHAIMSAIPPEKAGVGAGINGTVAEFGQGLGVAVLGAVLNSRFAAGISVAAVSLPGALAQAGSGPERARITEAFASGLESSQLVGAVAVLLGGVVAGVLLRRAERDGVA
>CP032427.1|AYC40144.1|4974588_4975389_+|Tetracycline-repressor-protein-class-B-from-transposon-Tn10
MANAGPNASGRTSVWLEGKVRRSGRGGGQPSGLDRERITEATVRLLDTDGLAKFSMRRLATELNVTAMSVYWYVDTKDDLLELALDAAFGGLELPDPETEEEDWRDQLRTIAREYRGLLVRHPWVSPLAGTFLNIGPNSLALSRIVHRVIRKSGLPAHGITGAISAVFQFVYGFGTIEGHFIARAGQAGMTQDAYFRHAMASATRSPDAAEILKENEEIMTARGGDTVEEMRDRDFTFALELLVAGIEAKVATTPQGREELRDQPQ
>CP032427.1|AYC40145.1|4975425_4975887_-|Putative-pyridoxine/pyridoxamine-5'-phosphate-oxidase
MAPNIATNTSVSLDELLDFVRPRHRALLLTRRADGSPQASPLTCGVDDSGRIVVSTYPERAKTRNAKRDPRVSVVVLSDDWDGPWVQVDGTAEVIDSPESVEPLVEYFRNISGEHPDWDEYRSAMVRQGKSIIRVTPERWGPVATGGFPARLA
>CP032427.1|AYC40146.1|4975891_4976473_-|putative-methyltransferase
MQAYYAESAERLGEVYESVSFEDVHGALLDLLPEAPARVLDVGAGTGRDATALAGRGYTVDAVEPVAELRRVAERLHPGSGVTWRPGALPEIPGVRGPYDVVLLSAVWMHLPPEERPVAMRRLAGLLAPGGLLLITLRRGEPPLDRRMFDIPPEEVADQGAEAGLRLLRTMAEGADRLGRDAVRWHAVVLQLG
>CP032427.1|AYC40147.1|4976560_4977382_-|Protein-YceI
MPVTARIRTRDGWAVSHAVVTVTDMTGTQVLRAEADAEGAVRDGTPLEPGPYTVIVTAVGYAPTASSAIVTASGRAEVGTVTLARVGGAELPPPGPWTVDPAHSSVGAVAQHLGISSVHGRFTDFTAAIEVAPDDVTKSRVEAVIRAASIDTGNAMRDDHLRSADFLDVERYPEITYRSTDLVVAGTDRWTVRGELAMRGVVRPVDLDLAYLGTGADPWGGTRAAFKATTQLRREDFAMNYNQVVQAGIAAIGTTLKVELDVQAVQGESLPQG
>CP032427.1|AYC40148.1|4977474_4980009_-|Multidrug-resistance-protein-3
MATTTPAGVRAHAKHGGGSGEHGPMTHRQIMEAISGLLLGMFVAILSSTIVTNALPHIISDLGGGQSAYTWVVTAALLSMTAATPLWGKLADLYSKKALVQIALVIYVLGSAAAGLSQNAGMLIACRVVQGIGVGGLSALAQIVMAAMISPRERGRYSGYLGATFAVATVGGPLLGGVITDTSWLGWRWCFYVGVPFAVIALIVLQKTLHLPVVKREVKVDWGGATAIAAAVSLLLVWVTFAGDKYDWLSWQTYTMVGGSIVLGLLFVLIESKASEPIIPLRLFRNRTITLASLASLFVGVAMFTGTVFFSQYFQLARDKSPTMSGVMTIPMIGGLFVSSTVSGQFITRTGRWKAWLVSGGVLVTAGLGLLGTIRYDTAYWKMSIFMALLGLGIGMMMQNLVLCTQNQVEPSDLGSASSTVTFFRSLGGAVGVSALGAVMSHRITHYVSDGIAALDPKYQAALAGSSSSTDSIPDLAKLPAPVRTLMESSYGHGIADVFLIAGALAAVAFLITLFIKEVPLRTKGALAQAAEAEAPAPEPSEAPVETAAEHTPSWAATETVSSDAENAPEGTQRLSAVATLARPEASGEGPGAVPVRGFVRGNEGVPVPRAAVTLISLAGQQLGRSVAQADGSYAVDAPGVGSYVLIASADGFQPQASTVLVGGEPVAYDILLSGTSGLNGLVRAAQSGEPVKDAMVIVTDVRGDLLATGTTGEQGEFAFGELVPGAVTVAVNAAGFRPRALPVEVGGTGVTRIEVDLDSGARLQGVVRAPHGPLADARVTLVDAAGNVVGTATTGTDGAYAFTDLDGGEYTVIATGYPPQATALTVNGPAVDGHDIELAHPGE

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Crispr_ID: CP032427_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_13

5268500-5268602

Orphan

Consensus_repeat	Method
GAGCCCGCCCGGCACCGCCCGGCTGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_13

>merge|CP032427|13|5268500-5268602|CRISPRCasFinder
GAGCCCGCCCGGCACCGCCCGGCTGACTGGATGCGGTCCTCGGGAGCCCGCGCGGCTGACTGGATGCGGTCCCCGAGAGCCTGCCCGGCACCGCCCGGCTGAC

>CP032427|13|12|5268500-5268602|CRISPRCasFinder
GAGCCCGCCCGGCACCGCCCGGCTGAC	TGGATGCGGTCCTCGGGAGCCCGCGCGGCTGACTGGATGCGGTCCCCGA
GAGCCTGCCCGGCACCGCCCGGCTGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC40419.1\|5262849_5263542_+\|Copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
CP032427.1\|AYC40423.1\|5267900_5268440_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40425.1\|5271543_5272575_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237057
CP032427.1\|AYC40422.1\|5266105_5267749_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223989
CP032427.1\|AYC40415.1\|5259800_5260061_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379076
CP032427.1\|AYC40421.1\|5265857_5266073_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40414.1\|5259393_5259804_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40428.1\|5274064_5274448_+\|Cold-shock-like-protein	unknown	unknown	gnl\|CDD\|224197
CP032427.1\|AYC40429.1\|5274481_5274889_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40418.1\|5261950_5262625_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274422
CP032427.1\|AYC40432.1\|5276452_5276956_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40433.1\|5277018_5278362_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340863
CP032427.1\|AYC40431.1\|5275776_5276433_-\|Futalosine-hydrolase	unknown	unknown	gnl\|CDD\|236194
CP032427.1\|AYC40417.1\|5261266_5261908_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226789
CP032427.1\|AYC40427.1\|5273640_5273901_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40426.1\|5273014_5273674_+\|Phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|223620
CP032427.1\|AYC40430.1\|5274893_5275784_-\|1,4-dihydroxy-6-naphtoate-synthase	unknown	unknown	gnl\|CDD\|270353
CP032427.1\|AYC40420.1\|5263556_5265626_-\|DNA-helicase-IV	unknown	unknown	gnl\|CDD\|226482
CP032427.1\|AYC40416.1\|5260115_5261240_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379112
CP032427.1\|AYC40424.1\|5268645_5271387_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379300

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC40419.1\|5262849_5263542_+\|Copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	5.90617e-26
CP032427.1\|AYC40415.1\|5259800_5260061_+\|hypothetical-protein	gnl\|CDD\|379076	pfam13223, DUF4031, Protein of unknown function (DUF4031). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 91 and 130 amino acids in length. There is a conserved HYD sequence motif.	4.1788e-34
CP032427.1\|AYC40425.1\|5271543_5272575_+\|hypothetical-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	0.00627796
CP032427.1\|AYC40422.1\|5266105_5267749_-\|hypothetical-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	3.25696e-109
CP032427.1\|AYC40428.1\|5274064_5274448_+\|Cold-shock-like-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.53609e-27
CP032427.1\|AYC40433.1\|5277018_5278362_-\|hypothetical-protein	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.69986e-23
CP032427.1\|AYC40418.1\|5261950_5262625_+\|hypothetical-protein	gnl\|CDD\|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	4.65756e-17
CP032427.1\|AYC40431.1\|5275776_5276433_-\|Futalosine-hydrolase	gnl\|CDD\|236194	PRK08236, PRK08236, hypothetical protein; Provisional.	1.10978e-73
CP032427.1\|AYC40417.1\|5261266_5261908_-\|hypothetical-protein	gnl\|CDD\|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	4.16894e-46
CP032427.1\|AYC40426.1\|5273014_5273674_+\|Phosphoglycolate-phosphatase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	1.17575e-20
CP032427.1\|AYC40430.1\|5274893_5275784_-\|1,4-dihydroxy-6-naphtoate-synthase	gnl\|CDD\|270353	cd13635, PBP2_Ttha1568_Mqnd, A menaquinone biosynthetic enzyme exhibits the type 2 periplasmic-binding protein fold. This group includes Ttha1568 (MqnD) from Thermus thermophilies HB8, an enzyme within an alternative menaquinone biosynthetic pathway that catalyzes the conversion of cyclic de-hypoxanthine futalosine to 1,4-dihydroxy-6-naphthoate. Menaquinone (MK; vitamin K) is an essential lipid-soluble carrier that shuttles electrons between membrane-bound protein complexes in the electron transport chain. Ttha1568 has significant structural homology with the members of type 2 periplasmic-binding fold protein superfamily. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.39403e-142
CP032427.1\|AYC40420.1\|5263556_5265626_-\|DNA-helicase-IV	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	1.64678e-66
CP032427.1\|AYC40416.1\|5260115_5261240_-\|hypothetical-protein	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	9.45003e-22
CP032427.1\|AYC40424.1\|5268645_5271387_-\|hypothetical-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	2.36609e-42

>CP032427.1|AYC40423.1|5267900_5268440_+|hypothetical-protein
MRMSAGRWAAGGGAVVVLVATGAWARWPGGTDVDADLWSRVRPAVEARLLEQARGTGVGEPGARWFCRAEAVDLDERGGLVRAGVSTLCVEYGVRAGSLEECSGAEVPQVMRLRREADGDYVVVSAETAPDGAGHAEWVTARFGHVTAAALDATMSSTALESAARSHFGLPADAPVGPC
>CP032427.1|AYC40422.1|5266105_5267749_-|hypothetical-protein
MNGPLIVQSDKTLLLEVDHEQADACRRAIAPFAELERAPEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDVAETMDRYGRLTLSKHPAHGLVLTTTDRPVLEEILRSKRITPLVGARLDPDTVVVHPSERGQIKQTLLKLGWPAEDLAGYVDGEAHPIELAEDGWALRPYQKQAVENFWHGGSGVVVLPCGAGKTLVGAGSMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEEEIGEYSGTKKEIRPVTIATYQVLTTRRKGVYPHLELFDSRDWGLIVYDEVHLLPAPVFKFTADLQARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGYIAPADCVEVRVNLTDSERLAYATAEQEEKYRFCATTATKRKVTEALVKRFAGQQILVIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFDAFRQGEISVLVVSKVANFSIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKADGHQAHFYSVVARDTIDQDFAAHRQRFLAEQGYAYRIVDADELLAES
>CP032427.1|AYC40421.1|5265857_5266073_+|hypothetical-protein
MPPLCLIGHHGYMSAATFTPAPGRPSGATPVSSGHTHRLGDALRAVRVFAGAAFDVVILGEYGQEAGVRRK
>CP032427.1|AYC40420.1|5263556_5265626_-|DNA-helicase-IV
MSTPLPTDDPLFRERSHLAESRAALRAMREDVESLDIKDVTANWVNAEVLARQIDERIKALADLSDTPLFFGRLDYLHAPGAEQAEGAEGERFYIGRRHVHDHDGDPMVIDWRAPVSQPFYRASKKDPMDVGLRRRFGYTRGDITAYEDEHLSDPAETARTSKLLQQEIERPRVGPMRDIVATIQPEQDEIVRSGLGGTVCVQGGPGTGKTAVGLHRVAYLLYAHRERLARTGTLVIGPNRSFLHYIEQVLPALGELSVQQATVDDLVAKGAEVRGTDEAPAAVLKGDARMAEVLRRAVYSHVTLPTEPVMVVRGSRRWRVPAYEIEEIVRELLDRGIRYGAAREALPQRIAHAVLVQMERSGEAPDDRVQDAVARNSAVKAAVKAIWPPVDPAKLVLRLLTDGDFLAAHAEGILDEDEQKTILWAKPVRSVKSAKWSAADAVLIDETTDIVERTHSLGHVVLDEAQDLSPMQYRAVGRRCSTGSATVLGDLAQGTTPWATRSWDEALAHLGKSDGVIEELTAGFRVPTDVITYASRLLPHIAPGLTPVASVRENPGFFDLRETSGSGQVVAACEELLRNEGSTGLIAADARVPELADALTAAGIPYLAPGEETTAETRLTLVPASLAKGLEYDYVVLDEPQAVVDGEPDERTGLRRLYVALTRAVSGLIVTHSAPLPEQLAGPTHRTG
>CP032427.1|AYC40419.1|5262849_5263542_+|Copper-homeostasis-protein-CutC
MSKRAVLEVIALDVEDALAARAGGADRLELVTDMAADGLTPAVATVAGIREAVDLPVRVMLRLSDGFGAGDVSRVVRSARELRGAGAEEFVLGFLDAHGELDRGAVERVVEALDGCRWTFHRAIDHAADRDALRKQLADLPGLDTYLTAGSAAGVDGGLAVLLAEAALAGEPGYEQQLLVGGGLRLDHVPQLRAAGIDAFHIGGAARPHGWEAPVAADAVREWRRVVDGH
>CP032427.1|AYC40418.1|5261950_5262625_+|hypothetical-protein
MTADDVRDPALPGRLLTTERDALIPLLRSRPDAAFALPTRGCPGWSVRDVLAHCSSALIRVVEGRFEKGVFSPESNDRDIAERADWTNQQVVDELERGMTEAGPVIAGAGGVLDVIALGEWVHAGDVREVWGEPGAYGGAGLPDALALLARATRERGHLPLHADLDDLDEPLRLGDVTGDRTPARYIGDAATLVRLYAGRPAEGRAYELAGAEAKELNIFVGIA
>CP032427.1|AYC40417.1|5261266_5261908_-|hypothetical-protein
MADLDDLRARFTAALDAARGTDGPDPLPYADNLLARWQEPQRRYHTLAHLTAVLDHIDVLESHADDPDLVRLAAWFHDAVYLPDRSENEDRSARLAERALPEAGVPVAATAEVARLVRLTTTHAPADDDRNGQVLCDADLAILAAPPAGYAAYTAAVREEYGFVPTDAFREGRSAILRQLLDLPRLFRTPYGAREWEATARYNLTSELEMLSL
>CP032427.1|AYC40416.1|5260115_5261240_-|hypothetical-protein
MTDMGGDVGGHRVTEAVAGAVAVLRTVTDRDWTAVKPAGMEWTVHETAFHICGCLIAYAGNLAGGAQDDYVPFDITLDEGTDNTGLLHVMETGGALLAAAVRTAPREARAFHPYPFRSANREGFAAMGVAEVLLHTYDVTRGLDLAYEPPAHLPEYVLTRIFPEVQPGPDPWRTLLWATGRGDLPGRARRTEWRWSNNLVLPAERLTLQGVTPASATDLAAGGDGGFDWVEDGPFEGTREAAGMTLKAYEAGVHRPEFGLFVLVRREDGRAVGGMGFHGAPDEDGRAEVGYDLAPSARGRGYATEALRALSDWALARDDVRSLCATIEPDNAPSQRVIARAGFLRASVEEEQAYGEKEPGLRLYVLSGPTPEAT
>CP032427.1|AYC40415.1|5259800_5260061_+|hypothetical-protein
MTVYIDPPTWPGHGRMWSHLISDVSFDELHAFAEELGVPSRAFERDHYDIPSHRYADVVAAGAVEVSSREVVRLLTGSGLRRPKGR
>CP032427.1|AYC40414.1|5259393_5259804_+|hypothetical-protein
MVKSAHNGRMESIGPLEQSLHTARALVLADLAVGDAAAPDVVSMVEDSVVQRRWWVEQWPEGADFVAGLVAQDVQDAILERHGRWPLCPVCGAGDPHALEVEPELGADPHWVCHKAGVKVAAVGSLGTATGEAPSP
>CP032427.1|AYC40424.1|5268645_5271387_-|hypothetical-protein
MSNPAVPPRSLAEALRARDDDSLAALLRARPDLITPVPTDLTQLATRAGTRASVVRALERLDLFALRTAEALAVAADPAPYAELEQLLTGDAGDAAVSAALPRSLGTLREQALVWGDDDRLRLVRTARELLAPSPQHPSPTGLGPTVQEATAGMSPGRVQEIVTAAGLGSTHDAVSAVASLTALFTDRKRMAALLADLPEESRAVLSRLVWGPPYGQVTSEPAAHLRRLLDLGLLVPTAPGTVVLPREVALHLRGGRAHREVEPLPPAVEPAATHRPQVVDATAAGQAYTALATVEELLKDWDEGGPAVLRAGGLSVRDLKRTAVALDVSEPVAAFWVELAYAAGLLASDGEADERYAATPAHDEWLEQPPARRWARLAEAWLTATRTSGLVGGRDAKDRTLSALGPGLDRGAAPEVRHRVLTLLAGLPEGASPSAESVLARLRWERPQRREEDLRSRLAEWTLKEAELLGVTGRGALSGHGRALLGATAPRTRDAVSRGAGDERHGQALPGTTAPRTRDAVSRGAGDERHGQALPGTTAPRTPDAVSQGPGDERHGQALPGTTAPRTPDAVSQGPGDKLPVHHHPAPAVAEPLSPAEQATASAAAARLLAPLLPEPLDHVLLQADLTAVAPGPLRRPLAEVLDVLADVESKGGATVYRFTPGSVRRALDAGQSASDLHAFLAAHSRTPVPQPLTYLIDDVARRHGHLRVGAASSYVRCDDDALLNEILADKRAAGLRLRRLAPTVLAAQADPASLLEGLRAMGFAPAAESAEGDVLITRAHANRTPPRSAPEPVPDGPPVPDATLLAAAIRAVRAGDLASTTPRKQGDRPPLSTGELPRTGAAETLATMQAAVLTGEALWIGYVNAEGAASQRVIAPVRVEGGFVTAYDHTADEVRTYPLHRITGVAELAGD
>CP032427.1|AYC40425.1|5271543_5272575_+|hypothetical-protein
MGIESDQVVYEYLSRVGDVAQQRQLPSSTRMRLVSELRNEIDRRRAKAPVDSPAAVRRIIARLGSPDEVVTAAGGSAATAPQAQAVSMPVQRDRESQDDGGQRRTGLRKNVPQPRPADPPPDPAVSHGPHLAGLDELGDPATQPDWWRVDSSPFGVGDSVPGFVGGVEIPELLKPPPPKEEKKPEPAVEQPPAEVLAPGKRTAWWRPRPKAAPPVVEAAPVPRRRFLGAGAGSWSNPLLLLAAALLVAGAVLGNLLVLIVGWLIAWASRRLTDAETKWAVVILPGLSLTAGLVWLWGRNEGRWGEPIAQGHMNDAIAETWPWVVRGAAVASALFLVWRSQRRR
>CP032427.1|AYC40426.1|5273014_5273674_+|Phosphoglycolate-phosphatase
MAHMASASISAPGPTVGFDLDMTLIDSRPGIHACWVELSERTGTYVDADLVVTRLGPPLAEEMAYWFPADRIPEMADLYRELYPAYAIAGTLAMPGAREAIDAVQAAGGRAIVVTAKWEPNARLHMEHLGLEPDAVIGNLWAEQKGEALREHGASVYVGDHTGDVRGARIARATSVAVATGPCSPEELTEAGAEVVLGDLTEFPGWFSDYRADCLPARA
>CP032427.1|AYC40427.1|5273640_5273901_-|hypothetical-protein
MRDKTQTNSAAPGDRLIRTGAVVFFVGAVATLVTVAPFLLGTKPFPTYMFGLSMLMAVGFVVAGAGVLQSVAAGRRQARAGRQSAR
>CP032427.1|AYC40428.1|5274064_5274448_+|Cold-shock-like-protein
MPTGKVKWFNSEKGFGFLSRDDGGDVFVHSSVLPAGVETLKPGQRVEFGVVAGQRGDQALSVAILDPTPSVAAATRKKPDELASIVQDLTTLLENITPMLERGRYPEKTAGKKIAGLLRAVADQLDV
>CP032427.1|AYC40429.1|5274481_5274889_+|hypothetical-protein
MWEYIRRQRRHTLELLVVCAVGLVPWTILLYFTLPSGYTVRQWRVTWVGFDVLLLLAMSATALLGWRRHRGVVVAAVATGALLVCDAWFDVSLALGTPAVWWSAALAVFVELPLAAFLLRKVLGMMSLAQWPGPR
>CP032427.1|AYC40430.1|5274893_5275784_-|1,4-dihydroxy-6-naphtoate-synthase
MTEPSQPLQPSRSVPPSQPLQIAYSPCPNDTFVFDALAHGRVPGAPALDVTFADIDITNGMAERGEFDALKVSYAVLPYVLDEYTLLPCGGALGRGCGPLVLTREAGVELTGRRVAVPSERSTAYLLFRLWAADVLDGKVGEIVVMPFHEIMPAVRDGLVDAGLVIHEARFTYQNYGLHKLADMGEHWESTTGLPIPLGAIIAKRSLGTELLSRLADSIRASVRAAWDDPEVSRPYVMAHAQEMDPAVADQHIGLYVNEFTADLGEDGYAAIRGLLTRAAAEGLVPALKPDALSFR
>CP032427.1|AYC40431.1|5275776_5276433_-|Futalosine-hydrolase
MRILVATAVPVERDAVAPAFEGMAADVLAVGVGPALAAAGTATALTRAALEGAGYGLVVSAGIAGGFLPGAPVGSLVVADEITAADLGAETAEGFVPVTALGFGTVTHRPPAALVRDAVAATGGRAGAVLTVSTVTGTAERAAALRARHPTALAEAMEGFGVAEAAGAHGVPVLEIRAVSNLVGPRDRAAWRIGDALTALTEGFGKLAPVLESWKQHD
>CP032427.1|AYC40432.1|5276452_5276956_-|hypothetical-protein
MTTLQSAVRRRRAVAAAGLVSAGLLVLSACDKPTPRVTVTVGSTSVSSEATCYDDGNNLGQAKATKCALEKSDAKTIKVNQSETLRVGVDPKVADTGWALWINGQQMTYVYKKTYYAFDGVDLFAQQQGQAPQKTLYISIVEQDKTASGQSKEHKGVWNFKLENADY
>CP032427.1|AYC40433.1|5277018_5278362_-|hypothetical-protein
MTGSVRAVGRALHFPFTGTARGIRKATHAHGAGESGLGKLIELHAVNGAGDVMITVALASTVFFSVPTDEARGRVALYLAITMAPFTVLAPVIGPLLDRLPHGRRAAMAGAMLARALLALIISGAVATGSLELYPAALGVLVASKAYGVVRSAVVPRLLPPRFSLVKANSRVTLGGLLATGIAAPVGAGLQAIGPRWPLYGAFVIFVAGTFLSFSLPPKVDSAKGEDVALLAADEGHLHGPHLKPVKRPGLRTVGTAVTHALGANAALRWLSGFLTFFLAFLLREHPLTGESAAVSLGLVAVSAGAGNALGTAVGAWLKSKAPEIIIVTVVAVVLGAAVTAAIFFGAFLVACLAAVAGFSQALSKLSLDALIQRDVPELVRTSAFARSETLLQVSWVFGGAVGIVMPLNGYLGLSVAAAVVAAGWLATAKGLIASARQGTAPRARVA

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Crispr_ID: CP032427_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_14

5878664-5878804

Orphan

Consensus_repeat	Method
GGGGCGCGGGGAACTGCGCGACAAGCCACGACGGACCCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_14

>merge|CP032427|14|5878664-5878804|CRISPRCasFinder
GGGGCGCGGGGAACTGCGCGACAAGCCACGACGGACCCGCACTCGCCGAACAACCGAACCCGGCACCCTCGTAGGCGCCCGGCCCAAGCCCAGCGCAGCGGGGGCGCGGGGAACTGCGCGACAAGCCACGACGCACCCGCA

>CP032427|14|13|5878664-5878804|CRISPRCasFinder
GGGGCGCGGGGAACTGCGCGACAAGCCACGACGGACCCGCA	CTCGCCGAACAACCGAACCCGGCACCCTCGTAGGCGCCCGGCCCAAGCCCAGCGCAGCG
GGGGCGCGGGGAACTGCGCGACAAGCCACGACGCACCCGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC40946.1\|5867255_5867576_+\|Quaternary-ammonium-compound-resistance-protein-SugE	unknown	unknown	gnl\|CDD\|171110
CP032427.1\|AYC40953.1\|5875322_5876696_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377281
CP032427.1\|AYC40963.1\|5884483_5885110_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223340
CP032427.1\|AYC40952.1\|5873798_5875127_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238868
CP032427.1\|AYC40955.1\|5878860_5879163_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40959.1\|5880883_5881300_-\|Sporulation-specific-cell-division-protein-SsgB	unknown	unknown	gnl\|CDD\|377399
CP032427.1\|AYC40964.1\|5885153_5886143_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379786
CP032427.1\|AYC40956.1\|5879314_5879740_+\|18-kDa-heat-shock-protein	unknown	unknown	gnl\|CDD\|107221
CP032427.1\|AYC40947.1\|5867606_5870015_-\|Penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|223815
CP032427.1\|AYC40961.1\|5883463_5883766_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379915
CP032427.1\|AYC40962.1\|5883934_5884243_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40954.1\|5876857_5878312_+\|Inner-membrane-metabolite-transport-protein-YdjE	unknown	unknown	gnl\|CDD\|365860
CP032427.1\|AYC40945.1\|5866744_5867095_+\|10-kDa-chaperonin-1	unknown	unknown	gnl\|CDD\|197951
CP032427.1\|AYC40957.1\|5879861_5880275_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378360
CP032427.1\|AYC40948.1\|5870218_5871019_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226953
CP032427.1\|AYC40958.1\|5880264_5880750_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC40960.1\|5881500_5883432_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274357
CP032427.1\|AYC40951.1\|5872975_5873668_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377959
CP032427.1\|AYC40950.1\|5871874_5872924_+\|ABC-transporter-ATP-binding-protein-NatA	unknown	unknown	gnl\|CDD\|213234
CP032427.1\|AYC40949.1\|5871038_5871860_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|253605

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC40946.1\|5867255_5867576_+\|Quaternary-ammonium-compound-resistance-protein-SugE	gnl\|CDD\|171110	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE.	1.0655e-28
CP032427.1\|AYC40953.1\|5875322_5876696_+\|hypothetical-protein	gnl\|CDD\|377281	pfam04286, DUF445, Protein of unknown function (DUF445). Predicted to be a membrane protein.	1.13962e-132
CP032427.1\|AYC40963.1\|5884483_5885110_+\|hypothetical-protein	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	1.01956e-20
CP032427.1\|AYC40952.1\|5873798_5875127_-\|hypothetical-protein	gnl\|CDD\|238868	cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	1.70604e-78
CP032427.1\|AYC40964.1\|5885153_5886143_-\|hypothetical-protein	gnl\|CDD\|379786	pfam16169, DUF4872, Domain of unknown function (DUF4872). Members of this family are often found in the gene neighborhood, or fused to, non-ribosomal peptide synthetases.	3.37022e-60
CP032427.1\|AYC40959.1\|5880883_5881300_-\|Sporulation-specific-cell-division-protein-SsgB	gnl\|CDD\|377399	pfam04686, SsgA, Streptomyces sporulation and cell division protein, SsgA. The precise function of SsgA is unknown. It has been found to be essential for spore formation, and to stimulate cell division.	6.50319e-35
CP032427.1\|AYC40956.1\|5879314_5879740_+\|18-kDa-heat-shock-protein	gnl\|CDD\|107221	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.	1.64861e-25
CP032427.1\|AYC40947.1\|5867606_5870015_-\|Penicillin-binding-protein-1A	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	1.02862e-138
CP032427.1\|AYC40961.1\|5883463_5883766_-\|hypothetical-protein	gnl\|CDD\|379915	pfam17032, zinc_ribbon_15, zinc-ribbon family. This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.	2.63738e-07
CP032427.1\|AYC40954.1\|5876857_5878312_+\|Inner-membrane-metabolite-transport-protein-YdjE	gnl\|CDD\|365860	pfam00083, Sugar_tr, Sugar (and other) transporter.	2.01837e-36
CP032427.1\|AYC40945.1\|5866744_5867095_+\|10-kDa-chaperonin-1	gnl\|CDD\|197951	smart00883, Cpn10, Chaperonin 10 Kd subunit. The chaperonins are 'helper' molecules required for correct folding and subsequent assembly of some proteins. These are required for normal cell growth, and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10). The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60.	1.51862e-26
CP032427.1\|AYC40957.1\|5879861_5880275_+\|hypothetical-protein	gnl\|CDD\|378360	pfam10025, DUF2267, Uncharacterized conserved protein (DUF2267). This domain, found in various hypothetical bacterial proteins, has no known function.	3.42511e-23
CP032427.1\|AYC40948.1\|5870218_5871019_+\|hypothetical-protein	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.33986e-27
CP032427.1\|AYC40960.1\|5881500_5883432_+\|hypothetical-protein	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.26083e-24
CP032427.1\|AYC40951.1\|5872975_5873668_+\|hypothetical-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	4.62902e-22
CP032427.1\|AYC40950.1\|5871874_5872924_+\|ABC-transporter-ATP-binding-protein-NatA	gnl\|CDD\|213234	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA. NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.	6.41431e-131
CP032427.1\|AYC40949.1\|5871038_5871860_+\|hypothetical-protein	gnl\|CDD\|253605	pfam06182, ABC2_membrane_6, ABC-2 family transporter protein. This family acts as the transmembrane domain (TMD) of ABC transporters. The family includes proteins responsible for the transport of herbicides.	5.93018e-59

>CP032427.1|AYC40954.1|5876857_5878312_+|Inner-membrane-metabolite-transport-protein-YdjE
MTTAQADTGRTVTTDIPARLDRLPWSRWHWTIVIGLGTVWILDGLEVTVVGNIASRLSEPGSGLSITSGQVTGVAAALYVAGACVGALFWGRLTDKWGRKKLFMITLAVYLAATALTSISFDAWWFFLFRFLTGFGIGGEYAAINSAIDELIPAQYRGRVDLMINGSFWLGAVGGSLLSIFALNTDFFAANVGWRLTFALGAVLALVILLVRRHVPESPRWLLIHGRDAEAERIVSSIESRVEEERGSALPRAEGEITIHQRRSVTFVEIARTVFSDYRRRAVLGFSLFIGQAFLYNAITFGFGAILTTFFDVPTGDTGYYFAVIAVGNFFGPLLLGKLFDTVGRRVMISSTYLLSGVLLFGTAWLFDRGSLSAATMTACWCAVLFFASAGASSAYLTVSEVFPMETRAMSIAFFYALGTAAGGISGPLLFADLTSTGKVGDTVLAFQIGAGLMCAAGLVAAFLAVRAERRSLEDVAKPLTAVE
>CP032427.1|AYC40953.1|5875322_5876696_+|hypothetical-protein
MERTEPEQKGSSGREWSAPAAEVGAANGASPASAVRTMTTFSAADEEKQRGVRRMKLTALGLLLFVALVYALAKWADSSGAGPWAGYVAAAAEAGMVGAMADWFAVTALFRHPLGLPIPHTAIIPTKKDQLGVSLGEFVGENFLSEDVVRQRLRAVGIGSRLGTWLADPEHADRVTAELSAALRGALTVLRDSDVQAVVGEAITRRADAQEIAPGIGKMLEKVVADGGHRRVVDLIVARAHDWLVLHDAQVMHAVQGGAPGWTPRFVDKKVGERVYKELLRFVTEMRDMPSHPARGALDRFLTDFASDLQSDTDTRARVERLKGEVLGRGEVQDLIASAWTAVRSMIVAAAEDERSELRLRVRASLLSLGARMAVDPKVQAKVDRWVEGAAVYVVTTYRREITSLITDTVAGWDAEHTTRKIEAHIGRDLQFIRINGTVVGSLVGLLIYTVTRAFGA
>CP032427.1|AYC40952.1|5873798_5875127_-|hypothetical-protein
MTRRHGYALLAAITAVIVALSTAIYVGVAADAGTRDRTALSGSGPSRPAVAPASAGTWVGTWAASPVGAEPGTATEGLAGRSVRNVVHTSVGGTSARITLSNLYGRTALTLTHASIALAAGHRTAAASAGTLRRLTFAGSTTVVIPAGGQVLSDAVPLAVPAGADVLVTTYSPTLSGPVTYHPWARQTSYSGEGDLTGDTTGTAFTERVDRWRYLTALDVLTGEADGTVVTFGDSLTDGKDSTADANNRWPDYLNRRLRAALAAGQDLPRYSVVNEGIGGNRVLVDARPPENQAGIHRFRRDVLERPGVKVVVIDLGINDILRTPGTVDADKLLAGLRDLVRQAHAHGIKVVGGTLMPFGDRHGWTKAREGVRQTVNAEIRAGRVYDAVVDFDKAVRDPYDPRTLRTLYDSGDRLHPNDRGYERMADAFDLEYLKGSAAARL
>CP032427.1|AYC40951.1|5872975_5873668_+|hypothetical-protein
MTEELPELRAADADRERVAEVLRDALAEGRLDMAEFEERLDATYKARTYGELAPITRDLPVGQVAAPRVDMVKQPEPDGSWASRIVGGEGSSTWSVAVMSGFQRKGRWTVPRRFNCFAFWGGGEIDLRDANFADREVEINCVAIMGGVEVIVPPGVEVVVRGIGIMGGFDHREEGVPGEPGAPRVIVTGFAFWGGVGVERKLRKADRLRLREERRQARRELREGRRRGER
>CP032427.1|AYC40950.1|5871874_5872924_+|ABC-transporter-ATP-binding-protein-NatA
MDVAVDETGDAVTDGAVDRAVDGAVDAFIELDRVEKVFDVRKKTGFLKRERRQVRAVDSISFTVARGEMVGYIGPNGAGKSTTIKMLTGILTPSGGRLRVAGIDPSRERTRLAHRIGVVFGQRTTLWWDLPLIDSYKLMHRMYRIPDARYRENLDRCVELLELGDLLDVPVRQLSLGQRMRGDIAAALLHDPEVLYLDEPTIGLDVISKAKVRGFLRELNTERGTTVLLTTHDLQDIEQLCSRVMVIDHGRLMYDGPLAGLHEVGESERTLVVDLERELPPIDAAPARVVRVEGPRQWLAFPASESAAALVARVAAEYPLVDLSVREPDIEAVIAKMYAGDAEAEKAVS
>CP032427.1|AYC40949.1|5871038_5871860_+|hypothetical-protein
MVRGSRLGEGLRAYRLIAGMWIRSAMTYRTSFVVTVCGNLAVTGLDFVGILLMFSQVDALGGWRLPEIAFLYGLSVTAFGIADLVLGSMDVLGSRIRDGSFDTLLVRPAPVLAQIGADHFAVRRLGRITQGAVVLIWALASVDVDWSAAKVLLVPLMVLSGAVIFCAVFVAGAAFQIFAQDAAEVQNAFTYGGTTLLQYPPTVFGKDFVRGVTFMFPIAFVNWVPACYVLGRPYPLDLPEWAAFAPPLVAAVCCGLAGLAWRAGLGSYRSTGS
>CP032427.1|AYC40948.1|5870218_5871019_+|hypothetical-protein
MGSGRLYAAVAAGGFRRYATYRAATLAGVFTNTVFGVILVYTYLALWDEKPHLGGYDQAQAVTYVWLGQCLYSTLAIQGGGAEKDLMDRIRTGEIAVDLYRPADLQLWWLASDLGRSLFQLLGRGVIPFAFGSLFFPMALPTDVTSWAALLVALLLAMVVSFGIRYLAALSAFWLLDGQGISQAVMILGIFCSGMVLPLNAFPGVFGDIVRTLPWAAQLQMPADVLMGKTDPLAAYAFQAVWAVVLLAAGRLLQQAATRRVVVQGG
>CP032427.1|AYC40947.1|5867606_5870015_-|Penicillin-binding-protein-1A
MSDQPQQPTEGWAPRDPQTVEEPGGEKKAKRPKRTGWRRLIPTWRMVLGTFVLGLLVLAGLFYLGYSMVKIPPANALATKQSNVYLYADGSQLARDGEVNRENVSLSQVSKDAQHAVLAAEDRDFYTESAIDPKAMLRAAWNTATGKGKQSGSTITQQYVKNYYLAQEQTVTRKAKEFFISIKLDREKSKDDILEGYLNTSYFGRNAYGIQAAAQAYYGQDAVQLDPAHAAYLAALVNAPSEYDVVAHPENKGAAEARWNYVLDGMVKKGWLAQSARTGLKFPMPKEQTVSTGLSGQRGYIRDAVEDYIINNKILTKDQLEAGGYRITTTLDKTKQNAFVKAVDDQVIDKLDKKDNKADTYVRAGGASVDPKTGRLVAMYGGIDYVKQYTNGATRGDFQVGSIFKPIVLAAAVQNDSRTQDGQTITPNTYYDGTNKRPVVGWSGGSYAPENEDQGSYGEITVREATDKSVNSVYAQMAVDVGSDKVKQTAIAMGIPADTPDLTATPSIALGVNTASVLDMAEAYATLANHGRHGTFTMIDKITNGEETVPLPAQKTRQAISREAADTTTSVLQSVVQNGTATAALAAGRPAAGKTGTAEEDTAAWFAGYTPQLATVVSVMGQDPVTAAHKSLYGALGLQRVNGGGPPAQIWAQYTKAALKGKPAADFDLELQPGAENQAPSTQAPVEPSTEGQDNGGTTTGGDTGGQDNGGATQGQTQGQSQGQTQGQDNGGTTTGGDTTGGATGGTTTDGGATGGTTGDTSGGTTDGGTTGDAAGGANGDSPSGGAATGGQNPAILGTREE
>CP032427.1|AYC40946.1|5867255_5867576_+|Quaternary-ammonium-compound-resistance-protein-SugE
MAWVLLVVAGLLEVGWSIGMKYTDGFTRLVPSVLTGAGIVASMILLSYAAKSLPIGTAYGVWVGIGAAGAAVLGMVVLGEPVTAARIFFVCLLLVAVVGLKATSGH
>CP032427.1|AYC40945.1|5866744_5867095_+|10-kDa-chaperonin-1
MSAKRNDTPHDKLPIRMLHDRVLVRQENGEGERRSGGGILIPATAAVGRRLAWAEVVAVGQNVRTVEPGDRVLYDPEDRAEVEVRGVGYVLMRERDLHAVAADRFEGSEDSTGLYL
>CP032427.1|AYC40955.1|5878860_5879163_-|hypothetical-protein
MAKVPSAVVAAGGLVGGYGVARWTRKRQLGGAVLAVAGAAAARQWRERAGGPAAGALTAAYVVAFAGSHPLAKKVGAWPAVLGVAGVVGLASWVVADRRG
>CP032427.1|AYC40956.1|5879314_5879740_+|18-kDa-heat-shock-protein
MLMRTDPFREFDRLAQQVFGSTARPSAMAMDAYRSGDDFVVHFDLPGIDPETIELDVERNVLNVRAERRGPAPEGAELIVAERPTGTFTRQLFLGDTLDTERIDASYDAGVLTLRIPVAEQAKPRRIQISGGGSGPRQISG
>CP032427.1|AYC40957.1|5879861_5880275_+|hypothetical-protein
MSANRPSWTDLVEAVREAGQYATRAEAEHVTHVVLSALGEHVTGEERVGLARALPEEAARVIASRIPLNRPLSAAEFVDAVAARIEGATPATARWHVSSVLSVLPELVGDEPVDRVLAQLPSGYALLFGKAELVLTA
>CP032427.1|AYC40958.1|5880264_5880750_-|hypothetical-protein
MFFLVPLLVLVLGGVACGLLGFGGGRAADWFVRRAELPAALLGFAALAGAATAALYAWGLLYVGGAVLEAEDGGADSSPILPCRADERAAHVVDYSVSLLPLDFVCETGDGGSYRAGEVPGYVTPAVIGFALAAAGLAVASGYVSEVRLRAAARAGGGVRP
>CP032427.1|AYC40959.1|5880883_5881300_-|Sporulation-specific-cell-division-protein-SsgB
MRLTTLHQTVRARLISSEHPELPIRPTLRYSTAEPFAVHIDFPAHVSADGQGVTWMFGRTLLEEGLEAPAGEGDVRIRPCGWARTVIEFHSPLGLAVIRFGTTTLRRFLLRSYDVVAPGTENLDPDLDQGLAALLDEV
>CP032427.1|AYC40960.1|5881500_5883432_+|hypothetical-protein
MTDQPARVPAQASPSATAAYVRIYEQEQPRLVAYARSLTRNSWAAEDLVAEAHFRVWRRLSAGHEIDNVPAYLMTTVRHLASSVASATHETPRDPQIPEQASAGHAEDPAERVSATDLLVRVLGELPERWVRALWLADAEGQPLESVGRQIGAKQGATAVLLHRAREGMRQAFLRSQTEAPEDPACEVHWVRMPAYVRGTATARQSERLLAHVDVCDECRGRLAVLVRANSRLPALAGPALLVLAVGGGATGKFLASLTAGAATGGAGVAGGSAASAGSAASAGSVGSVGSAGAAGGVSAGGPGLLRTVRAAAPKTKAALASGTAAAAAIAVVLTLGVNEAPSTVTSPTREPLAQGPVVGPAVGPTEGPAADTPADPRTVTAERGRSRVGGAEAVVAGDGSGVRRGGGGPQTARPEEPGDSGSGERERPAPVVPGPGPGPGPVEPAPVVPGTGPGPVEPAPEVPDPGPTAAVPAPVVPSPDPTPAEPAPVVPDPSPSPAEPAPVVPSPDPTPAEPAPEVPDPSPSPVDPPPGDDLPVPEPSSPTPVDPPPVEETPAPPAYSEPSPAPEPPETPQPSEPPAAPQPPETPQPSEPPAAPQPPETPQPPVGGGCGGEPAPAPGKPVAEQQAAEPASNRPQTRADAG
>CP032427.1|AYC40961.1|5883463_5883766_-|hypothetical-protein
MLILFGTKGYLYQLAILTLVCGRCGNPAAHTLRKRVTKFTLFFVPLFPISTKYATQCTFCGAESKLSAQEAEQLQAQAAAGGGQGGQVHGGQAPQQPYHQ
>CP032427.1|AYC40962.1|5883934_5884243_-|hypothetical-protein
MTKRFSALAVSAAIVGGLFITSAPAQAATSADRGQVSVKAAITCDKGQMRQQIANLKSKAAKLKQLGETAAARKALSDAAAIQKKLDACIKAEDEASKPFPG
>CP032427.1|AYC40963.1|5884483_5885110_+|hypothetical-protein
MTTTKTTTVTADLAISLDGCIAGPGVTPDNPGGDGAEPLFEWIHNLASWRERQGMTGGEENRDSELMREWFDATGAVVMGRTMYDTGADFWGENPPFRTPVLVLTHRPHPTLVKQGGTTFTFVTEGIHSALAQARKAAGDRNVDIAGGARTVRQYLRAGLIDELHLHVVPALLGDGLRLFEGVGAGRLEQVRAEATPLATHLKYRVVR
>CP032427.1|AYC40964.1|5885153_5886143_-|hypothetical-protein
MPMLTSVDTRPMQHCETTALGVLLRHQGIDLSEPMLFGLGRGLSFVYWDSKRMGFPFLGGRVKPFELTRNLAETLGLELSVRETTSPRKAWADVVEVVGRGQPVGLQLDSFHLEYFTAKVHFGGHVVALYGYDDQVARLVDTEQQGGAVCTSLGSLAEARAARGPMAAKHRSFALTAPRDLPALRTSIMASVTACAHAFLNPPIANLGHRGIDKAGKAVRTWLRRSDDPGRDLPQAALLMEKAGTGGALFRNLYRDFLAECAECVDSDHLRTGHRLYAEAAALWTEVAALITRAGESGEEQYLVRAGTTLLELSRIEREAMEALSRLES

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Crispr_ID: CP032427_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_17

8537325-8537401

Orphan

Consensus_repeat	Method
GCCCGCGTCAGCCCCCTGCACCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_17

>merge|CP032427|17|8537325-8537401|CRISPRCasFinder
GCCCGCGTCAGCCCCCTGCACCTGCGCGCCTGCCTGCCTCCGGCCGAGCGCCGCCCGCGTCAGCCCCCGCACCTGCC

>CP032427|17|16|8537325-8537401|CRISPRCasFinder
GCCCGCGTCAGCCCCCTGCACCTGC	GCGCCTGCCTGCCTCCGGCCGAGCGCC
GCCCGCGTCAGCCCCCGCACCTGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC43305.1\|8535789_8536848_+\|Endoglucanase-H	unknown	unknown	gnl\|CDD\|365907
CP032427.1\|AYC43296.1\|8524187_8524550_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC43307.1\|8538311_8538782_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225039
CP032427.1\|AYC43298.1\|8527172_8528177_-\|General-stress-protein-69	unknown	unknown	gnl\|CDD\|381302
CP032427.1\|AYC43297.1\|8524711_8526883_-\|Membrane-protein-YdfJ	unknown	unknown	gnl\|CDD\|225272
CP032427.1\|AYC43311.1\|8541877_8542894_-\|Oligopeptide-transport-system-permease-protein-OppC	unknown	unknown	gnl\|CDD\|224094
CP032427.1\|AYC43299.1\|8528265_8529180_+\|HTH-type-transcriptional-activator-RhaS	unknown	unknown	gnl\|CDD\|377694
CP032427.1\|AYC43309.1\|8539852_8540914_-\|Oligopeptide-transport-ATP-binding-protein-OppD	unknown	unknown	gnl\|CDD\|223521
CP032427.1\|AYC43313.1\|8544626_8545523_-\|L-amino-acid-amidase	unknown	unknown	gnl\|CDD\|188121
CP032427.1\|AYC43302.1\|8534035_8534380_-\|Tunicamycin-resistance-protein	unknown	unknown	unknown
CP032427.1\|AYC43315.1\|8546925_8548398_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238323
CP032427.1\|AYC43300.1\|8529402_8532633_+\|Fused-isobutyryl-CoA-mutase	unknown	unknown	gnl\|CDD\|239650
CP032427.1\|AYC43314.1\|8545764_8546520_+\|Putative-L-lactate-dehydrogenase-operon-regulatory-protein	unknown	unknown	gnl\|CDD\|225097
CP032427.1\|AYC43301.1\|8532583_8534002_-\|Enterobactin-exporter-EntS	unknown	unknown	gnl\|CDD\|340863
CP032427.1\|AYC43304.1\|8534594_8535641_-\|Lactose-operon-repressor	unknown	unknown	gnl\|CDD\|380488
CP032427.1\|AYC43310.1\|8540906_8541875_-\|Glutathione-transport-system-permease-protein-GsiC	unknown	unknown	gnl\|CDD\|223674
CP032427.1\|AYC43303.1\|8534398_8534566_-\|Tunicamycin-resistance-protein	unknown	unknown	gnl\|CDD\|235498
CP032427.1\|AYC43308.1\|8538839_8539856_-\|Oligopeptide-transport-ATP-binding-protein-OppF	unknown	unknown	gnl\|CDD\|236898
CP032427.1\|AYC43312.1\|8542890_8544609_-\|putative-deoxycholate-binding-periplasmic-protein-YgiS	unknown	unknown	gnl\|CDD\|173871
CP032427.1\|AYC43306.1\|8537515_8538217_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377369

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC43305.1\|8535789_8536848_+\|Endoglucanase-H	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	2.54584e-11
CP032427.1\|AYC43309.1\|8539852_8540914_-\|Oligopeptide-transport-ATP-binding-protein-OppD	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.58157e-170
CP032427.1\|AYC43307.1\|8538311_8538782_+\|hypothetical-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	7.02855e-27
CP032427.1\|AYC43298.1\|8527172_8528177_-\|General-stress-protein-69	gnl\|CDD\|381302	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR). Schizosaccharomyces pombe aldo-keto reductase YakC is a founding member of aldo-keto reductase family 13 member A1 (AKR13A1). It catalyzes the reversible reduction of ketones to the respective alcohols using NADP(+) as a hydride donor. Rauvolfia serpentina PR is a founding member of aldo-keto reductase family 13 member D1 (AKR13D1). It catalyzes the NADPH-dependent reduction of the aldehyde perakine to yield the alcohol raucaffrinoline in the biosynthetic pathway of ajmaline in Rauvolfia, a key step in indole alkaloid biosynthesis. This family also includes Arabidopsis thaliana aldo-keto reductases, ALKR1-6.	1.23702e-173
CP032427.1\|AYC43297.1\|8524711_8526883_-\|Membrane-protein-YdfJ	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	3.28187e-67
CP032427.1\|AYC43311.1\|8541877_8542894_-\|Oligopeptide-transport-system-permease-protein-OppC	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.57258e-72
CP032427.1\|AYC43299.1\|8528265_8529180_+\|HTH-type-transcriptional-activator-RhaS	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	1.45398e-42
CP032427.1\|AYC43313.1\|8544626_8545523_-\|L-amino-acid-amidase	gnl\|CDD\|188121	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase.	2.78027e-92
CP032427.1\|AYC43315.1\|8546925_8548398_-\|hypothetical-protein	gnl\|CDD\|238323	cd00578, L-fuc_L-ara-isomerases, L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.	2.1004e-113
CP032427.1\|AYC43300.1\|8529402_8532633_+\|Fused-isobutyryl-CoA-mutase	gnl\|CDD\|239650	cd03678, MM_CoA_mutase_1, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, unknown subfamily 1; composed of uncharacterized bacterial proteins containing a C-terminal MCM domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Members of this subfamily also contain an N-terminal coenzyme B12 binding domain followed by a domain similar to the E. coli ArgK membrane ATPase.	0
CP032427.1\|AYC43314.1\|8545764_8546520_+\|Putative-L-lactate-dehydrogenase-operon-regulatory-protein	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	6.53696e-44
CP032427.1\|AYC43301.1\|8532583_8534002_-\|Enterobactin-exporter-EntS	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.53108e-56
CP032427.1\|AYC43304.1\|8534594_8535641_-\|Lactose-operon-repressor	gnl\|CDD\|380488	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.19669e-108
CP032427.1\|AYC43310.1\|8540906_8541875_-\|Glutathione-transport-system-permease-protein-GsiC	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.8643e-94
CP032427.1\|AYC43303.1\|8534398_8534566_-\|Tunicamycin-resistance-protein	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	0.00253146
CP032427.1\|AYC43308.1\|8538839_8539856_-\|Oligopeptide-transport-ATP-binding-protein-OppF	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	2.36602e-143
CP032427.1\|AYC43312.1\|8542890_8544609_-\|putative-deoxycholate-binding-periplasmic-protein-YgiS	gnl\|CDD\|173871	cd08506, PBP2_clavulanate_OppA2, The substrate-binding domain of an oligopeptide binding protein (OppA2) from the biosynthesis pathway of the beta-lactamase inhibitor clavulanic acid contains the type 2 periplasmic binding fold. Clavulanic acid (CA), a clinically important beta-lactamase inhibitor, is one of a family of clavams produced as secondary metabolites by fermentation of Streptomyces clavuligeru. The biosynthesis of CA proceeds via multiple steps from the precursors, glyceraldehyde-3-phosphate and arginine. CA possesses a characteristic (3R,5R) stereochemistry essential for reaction with penicillin-binding proteins and beta-lactamases. Two genes (oppA1 and oppA2) in the clavulanic acid gene cluster encode oligopeptide-binding proteins that are required for CA biosynthesis. OppA1/2 is involved in the binding and transport of peptides across the cell membrane of Streptomyces clavuligerus. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	7.48869e-172
CP032427.1\|AYC43306.1\|8537515_8538217_+\|hypothetical-protein	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	7.50075e-27

>CP032427.1|AYC43305.1|8535789_8536848_+|Endoglucanase-H
MRKTPTSSPRAPHLRASLVAVAIAAISAAGLTGSPASAAAPTTDTTQFKGVNWADPRDNFADDELQLSGLSTTDTYAQTYTKASRVIAAFRTNLGANTVRLPINPYTVNGSYWKSYRGVVDAATAQGFKVIVSYWEGTGDRRDGFIDDEATYWPMWNTVVKAYKNNSRVYFEPMNEPHGYTDAQWADIAAKWLDTYRFVPRNRVFVSGAGYNDHVTTVCADPRLKGTYLSLHDYGFWKSYATYDEWVADVKTRIGDCANRTVADEFGAPMTTGLNYNVKTPDDNYVNFIQAATDTFRELKMGSVYWPGLRTDDIYSIQKLVGPAARPWLETTNRSGADRLAWGWGRGKPVQG
>CP032427.1|AYC43304.1|8534594_8535641_-|Lactose-operon-repressor
MVERGGSGVPGGRRKQRVSMADVAKLAGVSSQTVSRVSNGHPGVISSTREQVLAAMRELGYRPNSAARALRYGQFNTIGVILFSLSSTGNSRTVEAIATHAAAEGYATTLIPIDVPTQDNVLGAFTRMGELAVDAVIVIMEIHLLDTGTVQLPPGVHVVVVDSDAGDRYSVVDTDQADGARKAVRHLLDLGHRTVWHVTGPQESFAGQRRAQAWRAVLGEAGRPVPPALYGDWSAASGYEAGLVLPEPPDCTAVFAANDQMALGLLRAFHERGLSVPYDVSVVGFDDIPDAGFFVPPLTTVHQDFAEVGHRCVQKALEQIRAQTEARPGTDLVPTTLVVRGSTAPPSV
>CP032427.1|AYC43303.1|8534398_8534566_-|Tunicamycin-resistance-protein
MIVWINGAFGSGKSTLVEELRPRWPESLVFDPEMVGYVLREIVEVPTGDFQDLRL
>CP032427.1|AYC43302.1|8534035_8534380_-|Tunicamycin-resistance-protein
MAVGLVEEYRRPLLVPMTLVNPGYLDEIFGALREAGLDVRHFFLKVAPEVLERRIDGRSFFPDDPAREERVRAWCKERIEACSAAVDTLPGDTVFLDGEASPGELAGQVLAHLG
>CP032427.1|AYC43301.1|8532583_8534002_-|Enterobactin-exporter-EntS
MTRAKRMLVDVRPLRVGEFRRLWLAGIVTGLGAQLTAVVVPLQIYEVSGSSADVGLAGLVGLVPMAAAALWGGALADLRDRRRVLLVTTIGIGGTSLLLWAQAWANLRSVGVLFVLVAVQQALFGANSTVGRAVTPRLVSPELLPAANALQSTVLLAAGIAGPLLAGGLLPVVGSRTLYLADAIAVCATVWAVWRLPDLPPYDGGERPKGAVPRQIGDGIRLVMSRQVLLLVYVADFAALSLGLPTALFPQLAAETFRPSDIGVLYAAVSAGGVLAGLFSGAFTRVGRHGVAVGVSVGVWGVAVAGFGLSGTLVPAVAWLVLAGGALLALGVFRKTVLQTAVPDGMRGRLQGIDTVVAVGGPRVGNLLHGTVGAALGVPWTVTGGGVLTVAAALLLLVLFPGFRRAGGRGGACRGPRRPPHRSRRGGPLGHDVAHPAAAPRDPGAARRLPVRGVGALRRSAGTARPPRRTPR
>CP032427.1|AYC43300.1|8529402_8532633_+|Fused-isobutyryl-CoA-mutase
MSDLHRPVHPVRLVTASALFDGHDASINIMRRIFQSQGAEVIHLGHNRSVREVVDAALEEDAHGVAVSSYQGGHVEYFEYLVASLRKQGAEHIRVVGGGGGVIVPEEIARLREAGVTIFSPEDGQRMGLAGMVNTVVRDCDFDLWDGKPADLSAVLAGDRFAIARAVTGAELGKLPAEFRAELRTAAAGRRVPVLGITGTGGSGKSSLTDELVRRFRVDQRDALRIAVIAVDPTRRRGGGALLGDRIRMNSLDGERVFFRSLATRGSRELPEHLSDVIDVVKAAGFDLVVVETPGIGQGDAAIVPFVDASLYVMTPEFGAASQLEKIDMLDFADVVAINKFERRGAKDALRDVGRQLVRNREAFGQRPEDMPVYGTSAATFNDDGVTALYQHLRGTLADKGLPLSEGALDPVDVRHSSGIRQVVPTDRVRYLAEITDAVRGYHAETLQLAERARRVQRLEMVEGELADAGLDAEDVRSLLSEARRQLPYEITEQITHWPAVIASYSGDEQVVKVRDKEIRTKLTRESLSGNKIPRVALPRFTDHGELVRFWRSENLPGRFPFTAGVFPFKRDGEDPARMFAGEGDPFRTNRRFKLLSEGQPATRLSTAFDSVTLYGRDPDERPDIYGKVGTSGVSVATLEDMKALYDGFDLVAPTTSVSMTINGPAPAVLAFFLNTAIDQQIERFRAEEGRDPAPEEAARLRAHALANVRGTVQADILKEDQGQNTCLFSTEFSLRMMADIQEWFIRQQVRNFYSVSISGYHIAEAGANPISQLAFTLANGFTYVEAYLARGMKVDDFAPNLSFFFSNGMDPEYSVLGRVARRIWAVAMKEKYGAGERSQKLKYHVQTSGRSLHAQEMDFNDIRTTLQALIAIYDNCNSLHTNAYDEAVTTPTEESVRRALAIQLIINREWGLAMNENPLQGSFIIDELTDLVEEAVLQEFERINERGGVLGAMETGYQRGRIQDESMLYEQRKHDGTLPLIGVNTFRNPHADTAEPAVVELARATEEEKQSQLERVRDFHARHHDEAQAALADLKDAAVRGENVFAVLMDATRVCSLQQITEAFFEVGGQYRRNV
>CP032427.1|AYC43299.1|8528265_8529180_+|HTH-type-transcriptional-activator-RhaS
MLDGLARVVERHCVGPWSQTAVPRLSLVAVDKIMEPIEVMYEPMVCFIADGAKRTAAGERSWITPPGSMALFTLDLPVTAAFEEVPYRAAVMRLDNQALSALQLELATTGPPSPQPAAAAVTAPMAPELVDAVTRWVRLLDAPEDIGPLAPRIETEILYRLLRSPLGPVLRHWSLADSAAARIRMTARWIRDHCTERLGIDEIAEVARMSPATLHRHFKAATGMSPLRFHKHLRLQEARRRLLTGEGTAAQVAQDVGYVSATQFNREYRRAYGLPPGQDAARLRTRLSEAGEVPLLRDATGAKP
>CP032427.1|AYC43298.1|8527172_8528177_-|General-stress-protein-69
MTQHQRNLPLRRLGTQGLEVGAVGLGTMGMTMAYGTADEQGSIATLRRAHELGVTLFDTAELYGMGTGSNEQLLGRALKDVRDDVVLATKFGFDLSDPTKLGALDSRPEHIREVTENSLRHLATDHIDVLYQHRVDPAVPIEEVAGTVGELIAEGKVRYFGLSEAGPDILRRAHAVHPVSVLQTEYSVFERAVEQEVLPVVRELGIGFVPYSPLGRGFLTGAVRPAAEYPSDDMRSWDERWQPGNYEKNLAAVRELTALAESKGIAVTQLALAWLLAQGDDIVPIPGTRSVRRLEENVASASVDLTPEDLARVQEILPHGSAGSRYPQSMMPIW
>CP032427.1|AYC43297.1|8524711_8526883_-|Membrane-protein-YdfJ
MFRRIGNVVVRHPVWTIVAWLIAAVAIVATAPSLPSNSDESSFLPKSYESIKAADIQAKAFPAAFTPSAIALYQRTDGGKLTAADKKDVERISSELGEKKIDQVQKVVPGQPSSDGRYTMTLVQMDSKNAGQPVQADAAKVLRDDVKQLVKGTNLEAKLGGSAAQALDQQDSSKRGEALIGIGTFVIILVTLLIIFRAPILAFLPLITIGLVSAIANGLIAYATKLFGLQANSSISSILIVVLFGVGTDYFLFLMFRYRERLRLGDEPKQAMVNAVDRVGEAIASAAGAVIIAFFALVLSTLGFLKQMGPALAIAVTVTLIAGLTLIPAVVSLIGPKVFWPSKSWQREPENARFAALGRGVQKRPALTAALSGLVLVVLSLGTLGFNATFDLAAGSMPKTKESMVVQDEMQKAYSAGAAAPTDVYLSSTDGKAIDTTVFDAYVKKLAAVDGVANARLAQLNKDGSTIDFNVTLKYEASTDKAIETVGRVREVAHADAPPGTEAVVGGMSSIYKDIDTAVTHDYKTVFPVAALLIMLILGLLLRSVVAPWYLIASVGLGFGATLGATVWIFQGAVGHSGLMFMLPVIMYLFVVAIGTDYNILMIARLREEAREGREPREAAGMALRHAGPTVAAAGFILAATFATMMLAGNALLTEMGFAVSFGIAVAAFVMAMFFTPSLTALIGHAAWWPGHADRAKEPTATPAPVSGGERDTLAHDPAGRRS
>CP032427.1|AYC43296.1|8524187_8524550_-|hypothetical-protein
MKTRRLHGCLGTVVGLALAAATAMFLGRAWNACDVGVNNAANSTFLIWLFIPGLWAVLVLAWVAVGALFGNHPLVYALALAVTLAGVVWCTLSLWLGDATPACPDGVPPWWPRLIPAPGF
>CP032427.1|AYC43306.1|8537515_8538217_+|hypothetical-protein
MATRRWGAAAVRRRMQRVKWGEVGGAAALVVVMTYWSHVWPYVLGFLLVRILVAVGLRLWRTDRLLRSRDREWRREDAVRAGRRTLAEVDAMTGTEFEELVADLCRRDGCTEVRRVGGAGDNGADVLARLPDGRTIVVQCKRYAPHRAIPNRELRELLGARLHFRADLAVFVTTSRFTGPSERFALEHDILAVHRDHLGLWNNGASLMSLSEVNGRGQGDARHRRRWKQAYGE
>CP032427.1|AYC43307.1|8538311_8538782_+|hypothetical-protein
MEARLNVFTSPLAGKLLKHFASAGKVVTDSGLPLTTQELVKIRASQINGCGFCLDMHTKEAAAAGETAQRLHMVAAWREAKVFTEAERAALELAEQGTRLADGTGVSDEVWENAAKHYDEEQLLALVSLIAVINAFNRLNVLTQQPAGDYVVGQFG
>CP032427.1|AYC43308.1|8538839_8539856_-|Oligopeptide-transport-ATP-binding-protein-OppF
MTTQESMTVDEAAPPGEVLLRATDLIKHYPVRGRRQVLRAVDGVSLEVRGGETLGIVGESGCGKSTLGRCLVRLTELTGGRVEFDGQDISTLSNRRLRPVRPGMQLVFQDPQASLNPRRRAGDIVAEPLLVHRYGDKHAVRRKVGELFDVVGLAAAHLDRYPHEFSGGQRQRIGIARALATNPKLVVADEPVSALDVSIQAQVLNLFADLQEEFGLTYVFIAHDLGVVRHVSDRIAVMYLGGIVELAGTDALYAQPAHPYTQALLSAVPDIDDGTVGDERPRERIALTGEVPSPADKPTGCPFRTRCPYVQELCAVERPPLTMTASGRHVACHYPLAG
>CP032427.1|AYC43309.1|8539852_8540914_-|Oligopeptide-transport-ATP-binding-protein-OppD
MPEPLLDVRDLSVGFRTRQGVVTAADGISFSVAPGEVLGVVGESGSGKSVSMLAVLRLLTNPNVSVSGQVLFRGRDLLTLPDREMRAVRGREVAMVFQDPMTALTPVYTVGWQIAEAIRAHEQVSRKEARARAVRLLSDVGIPDAASRAHAYPHEFSGGMRQRAVIAMALSCGPSLLIADEPTTALDVTVQAQILDLMRELNSRGSAMVLITHDMGVVSQIADRVLVMYGGRAAEQGPRQAVFHRPRHPYTWGLLDSVPRVGGLRVRRLPTIAGTPVSPGAVPEGCAFAPRCRLSHERCGERPALTAGNAEPTHLDACWLPGEDRARLRVTADGDRARPDAAADEDVNREVAS
>CP032427.1|AYC43310.1|8540906_8541875_-|Glutathione-transport-system-permease-protein-GsiC
MLVFALKRFGSALLVMFAISVLVFLIFFATPGVDPAARIAGRNADPATLAQVRHSFGLDRPMPVRYLLMMRHLLIDRDLESFVNRGSRVIPQILQATPVTLSLVVGAALIWMTAGILMGTAAATLRGRAADPLIMLVGVVGVSLPAYWLGEVVNLLTQKQLHDSLFSWVPPPGYVGLGQDPGQWALHMLFPWLTLALLYAGIYARLLRGEVVTALNEDYVRTARAKGLSERRILIRHALRCSLIPIVSLFGLDFGALVGGAALLTEVVFGLPGIGKLTFDALQNLDLPVIMGTVLYAAFFVVLANALVDILYARLDPRARHA
>CP032427.1|AYC43311.1|8541877_8542894_-|Oligopeptide-transport-system-permease-protein-OppC
MTLAPSAGARRSPGPWRTAASDLLRNRSALASAAVLLLVVLATVCAPLYADHIAHTDPFQSHVSGTTVVDGKTVPVLTPSSTGLGLGVTPIGPTWDPAHYFLGADNQGRDVMARLLYGGRTSLFIGFTAALLTCVLGTAVGVVAGYAGGVVDAVVSRVLDVIWAFPVYLLAICLSVVLLTNGLKLGPLTVDAGSLWLPVAIIAAIYVPYIARPLRGQVLVLRNKEYIQAAVGSGAPTSRILRREVLPNVVPTALVFVPLMTALAMLTESALSFLSVGVQPPDASWGTIIEDGLGLLYTRPAVTIAPGLLIALTTAALNVLGDGVRDALDPGARLRGGV
>CP032427.1|AYC43312.1|8542890_8544609_-|putative-deoxycholate-binding-periplasmic-protein-YgiS
MSRTTRRIAPAAAVAALALTAACSSSSDSGSSSAPSSSGSGSSAFQAQHKGGTLKLVAHAAAGSFDPQVNYTLQYWQLFQSMYDGLLAFKKVGGQESFTVVPDLAAAMPKVTNGGKTYTFTLRKGITFSNGKPLTTDDVVASFQRIFKVSSPTAGTFYNGIVGADACLKTPASCTLPKGVIGDAKTNTVTVNLTAPDPEFEYKLAVPHAVVVPKDSPTKDAGTKPLPTTGPYTAASYDPNRALKLVRNPHFKEWSREAEPQGYPDVIDYTFGQTVESEVTAVENGQADWMFDAPPADRLSEIGTKYASQAHVNPLTAFWYATLNVHMPPFDNKLARQAINWAVDRSAVVRLYGGTNLASPACTILPPGFPGHVDSCDYTKGGGTTWRAADLAKAKALVKQSGTAGQEVGIVVQDDDVNKSIGQYLQSLLTQLGYKATLKPLSGNIQFTYIQNTKNKVQLALTSWYQDYPAASDFLNVLLSCASYHPGSDSSINISGFCDKTVDARMQAAIKTSQTDKASADKQWGAVDQQIMGESPVVPLINPKLIDFTSTRVGNYRFSKQFYMLVGQLWVK
>CP032427.1|AYC43313.1|8544626_8545523_-|L-amino-acid-amidase
MAIPEPNHTGTVDFNGHSTWYRITGEPGRTPLVVLHGGPGAGHHYTLSIAGISRQGRPVIHYDQLGTGFSTHLPDKGADFWTVQLFLDELDNLLTELGIADGYHIVGQSWGGMLAAEHAVRRPAGLRGLVIANSPASMGLWLAAAAELRAALPEKVQRTLYAHEAAGTTDHPDYRAAEQVFNERHVCRLTPNPPEVQATWENIAVDPTVYHTMNGPNEFHVVGTLKDWSVIDRLHLIEAPTLLVSGRFDEATPETVRPFADHIPDVRWHMFEHSSHMPHVEEEELYLRIVGEFLDSTD
>CP032427.1|AYC43314.1|8545764_8546520_+|Putative-L-lactate-dehydrogenase-operon-regulatory-protein
MLLGDGPTASLRPVRVTSAVDEVTDRLLTAIAVGDFLPGERLPAERDLTGLLGVSRPTVREAVARLQALGVVESRRGRNGGAFVRDSWTESSGAAVRRTLLPRWEEFEQLFDLRGLVEGMVAATAARRRRPEDLEPMREALSAHLSASTPREEQAADSAFHRAICAATHNPQIAQLSRDLLTRISLGFPVEPWGRGERSHHERAGHGHTALYEAVAAGEPERAEEIAREHFMISAEMIRDVLARVRATQAP
>CP032427.1|AYC43315.1|8546925_8548398_-|hypothetical-protein
MATTESTTTRPGERQAALAELLPPVTRRRPRIGLVSGGLGTYWPQFPGLLPQLKESAAYVAERLGQLDAEVTDAGFVSDAQEGAAAAERLRRADCDLIVLFLTTYLTSSMVLPIAQRTHTPVLVVDLQPSERMDHASFDTGAWLAYCSQCSVPEVGNVFRRAGIPFRSVSGWLRQESAWRRVERWVRAAHVRAALRHARHGLMGHVYPGMLDVQTDPTLLSATFGSHVEVLEFDDLRQRVGKVTEAETRERVALARKVFSIDGSVVDEDFAWGATVSVALDRLVEDFRLDSLAYYHRGLDGELHERLGAGMILGASLLTARGVPAAGEFELRTSIAQLASQSIGAGGSFTEIQALNFEDGVVEMGHDGPAHLALSSRDPLLRGLGVYHGKRGWGVSVEFDVRPGPVTLLGLGQDADGSLSFVTSEGTVVPGPVLEIGNTTSRVDFGRDPGEWVDAWSATGVGHHWSLAVGRHGADFGAAASLLGIDHREV

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Crispr_ID: CP032427_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_18

8633063-8633151

Orphan

Consensus_repeat	Method
ACCGCACCTGAGCGACCGGGCGTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_18

>merge|CP032427|18|8633063-8633151|CRISPRCasFinder
ACCGCACCTGAGCGACCGGGCGTACGCGGGATCACGCGGTCCGGTCCCACGCGGACACTCCACAACCGCACCTGAGCGACCCGGCGTAC

>CP032427|18|17|8633063-8633151|CRISPRCasFinder
ACCGCACCTGAGCGACCGGGCGTAC	GCGGGATCACGCGGTCCGGTCCCACGCGGACACTCCACA
ACCGCACCTGAGCGACCCGGCGTAC

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC43391.1\|8633179_8634448_-\|N-acetylglucosamine-repressor	unknown	unknown	gnl\|CDD\|224851
CP032427.1\|AYC43394.1\|8636911_8637772_+\|Inner-membrane-ABC-transporter-permease-protein-YcjP	unknown	unknown	gnl\|CDD\|223472
CP032427.1\|AYC43392.1\|8634604_8635921_+\|Maltose-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|270303
CP032427.1\|AYC43388.1\|8630685_8632107_+\|Extracellular-endo-alpha-(1-5)-L-arabinanase-1	unknown	unknown	gnl\|CDD\|350112
CP032427.1\|AYC43387.1\|8627990_8630576_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379971
CP032427.1\|AYC43386.1\|8627097_8627994_+\|Inner-membrane-ABC-transporter-permease-protein-YcjP	unknown	unknown	gnl\|CDD\|223472
CP032427.1\|AYC43397.1\|8639763_8640942_+\|Multidrug-resistance-protein-MdtH	unknown	unknown	gnl\|CDD\|340883
CP032427.1\|AYC43395.1\|8637792_8639154_+\|Beta-glucosidase-A	unknown	unknown	gnl\|CDD\|274539
CP032427.1\|AYC43399.1\|8641867_8642854_+\|Epimerase-family-protein	unknown	unknown	gnl\|CDD\|187553
CP032427.1\|AYC43380.1\|8619610_8620615_+\|PEP-dependent-dihydroxyacetone-kinase,-dihydroxyacetone-binding-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
CP032427.1\|AYC43400.1\|8643284_8644925_-\|Phosphoglucomutase	unknown	unknown	gnl\|CDD\|236050
CP032427.1\|AYC43385.1\|8626206_8627091_+\|Lactose-transport-system-permease-protein-LacF	unknown	unknown	gnl\|CDD\|224096
CP032427.1\|AYC43383.1\|8623555_8624554_+\|HTH-type-transcriptional-regulator-DegA	unknown	unknown	gnl\|CDD\|224525
CP032427.1\|AYC43396.1\|8639206_8639767_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC43382.1\|8622341_8623130_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376806
CP032427.1\|AYC43381.1\|8620882_8622094_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|277331
CP032427.1\|AYC43398.1\|8641108_8641801_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198080
CP032427.1\|AYC43384.1\|8624845_8626156_+\|Multiple-sugar-binding-protein	unknown	unknown	gnl\|CDD\|270452
CP032427.1\|AYC43393.1\|8635926_8636919_+\|Inner-membrane-ABC-transporter-permease-protein-YcjO	unknown	unknown	gnl\|CDD\|224096
CP032427.1\|AYC43389.1\|8632171_8632642_-\|putative-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC43391.1\|8633179_8634448_-\|N-acetylglucosamine-repressor	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.63329e-45
CP032427.1\|AYC43394.1\|8636911_8637772_+\|Inner-membrane-ABC-transporter-permease-protein-YcjP	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.32053e-77
CP032427.1\|AYC43392.1\|8634604_8635921_+\|Maltose-binding-periplasmic-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.66172e-67
CP032427.1\|AYC43388.1\|8630685_8632107_+\|Extracellular-endo-alpha-(1-5)-L-arabinanase-1	gnl\|CDD\|350112	cd08998, GH43_Arb43a-like, Glycosyl hydrolase family 43 protein such as Bacillus subtilis subsp. subtilis str. 168 endo-alpha-1,5-L-arabinanase Arb43A. This glycosyl hydrolase family 43 (GH43) subgroup belongs to the glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) which includes family 43 (GH43) and 62 (GH62) families. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. Many of these enzymes such as the Bacillus subtilis arabinanase Abn2, that hydrolyzes sugar beet arabinan (branched), linear alpha-1,5-L-arabinan and pectin, are different from other arabinases; they are organized into two different domains with a divalent metal cluster close to the catalytic residues to guarantee the correct protonation state of the catalytic residues and consequently the enzyme activity. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	4.66023e-104
CP032427.1\|AYC43387.1\|8627990_8630576_+\|hypothetical-protein	gnl\|CDD\|379971	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.	1.60399e-134
CP032427.1\|AYC43386.1\|8627097_8627994_+\|Inner-membrane-ABC-transporter-permease-protein-YcjP	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	6.42355e-69
CP032427.1\|AYC43397.1\|8639763_8640942_+\|Multidrug-resistance-protein-MdtH	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.10034e-37
CP032427.1\|AYC43395.1\|8637792_8639154_+\|Beta-glucosidase-A	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
CP032427.1\|AYC43399.1\|8641867_8642854_+\|Epimerase-family-protein	gnl\|CDD\|187553	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8. This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.3703e-108
CP032427.1\|AYC43380.1\|8619610_8620615_+\|PEP-dependent-dihydroxyacetone-kinase,-dihydroxyacetone-binding-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
CP032427.1\|AYC43400.1\|8643284_8644925_-\|Phosphoglucomutase	gnl\|CDD\|236050	PRK07564, PRK07564, phosphoglucomutase; Validated.	0
CP032427.1\|AYC43385.1\|8626206_8627091_+\|Lactose-transport-system-permease-protein-LacF	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	6.17013e-67
CP032427.1\|AYC43383.1\|8623555_8624554_+\|HTH-type-transcriptional-regulator-DegA	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.28902e-80
CP032427.1\|AYC43382.1\|8622341_8623130_+\|hypothetical-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	4.3328e-06
CP032427.1\|AYC43381.1\|8620882_8622094_-\|hypothetical-protein	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.16812e-70
CP032427.1\|AYC43398.1\|8641108_8641801_+\|hypothetical-protein	gnl\|CDD\|198080	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	2.3833e-16
CP032427.1\|AYC43384.1\|8624845_8626156_+\|Multiple-sugar-binding-protein	gnl\|CDD\|270452	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold. This group represents the periplasmic component of an ABC transport system XBP1 that shows preference for xylo-oligosaccharides in the order of xylotriose > xylobiose > xylotetraose. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.14753e-39
CP032427.1\|AYC43393.1\|8635926_8636919_+\|Inner-membrane-ABC-transporter-permease-protein-YcjO	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	7.74778e-67
CP032427.1\|AYC43389.1\|8632171_8632642_-\|putative-HTH-type-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.51604e-16

>CP032427.1|AYC43389.1|8632171_8632642_-|putative-HTH-type-transcriptional-regulator
MSQEGVGIDLETSLGYLLKEASSALRTAMEEVLRPLGMSVTHYSCLELLAQRPGLSNSELARGAFVTRQTMNVLLQALERDGYVTRPVEAPVGKVLPTRLTPSGRRSLEKASAAVRSVEARMLSGLTGAEQAAAFGALKSMIQSLRGGDGGTRVVP
>CP032427.1|AYC43388.1|8630685_8632107_+|Extracellular-endo-alpha-(1-5)-L-arabinanase-1
MHRPTTSGERRTRAGRSVLAALMVALMAVLGLVTAGPAQALSGDLRMHDPSVIKVGSCYYGFSTGFENDPLNPSGSITIRKTCGGTAASGWTKVGNVWSSTPSWITAKLGSTPPNIWAPDIKYFNGSYHLYYAGSLWGSNYAVMGVATATNIEGPWTDQGMVTDVNYPIDPNVDWGPDGRLYISWGSWTGSGTYMHVLDQTTGKLSTTDNNLWHIAVGIENPTIILNGGYYYLFGSKGLCCSGVNSTYYTVVGRSTSITGPYLDQNGTDMASGGGTTVLTGAYPRVAAGGADAYDDGTSKFLAYHYYDGDNAGQETLDIRQVTFAGGWPVLAAPLGTTNNHLLNRNSGKCADVWYLSTADGASVNSGNCNSGANQQWVPTAVGSAYELVNVNSGKCLQISGGSTADGAVAVQSTCTGAPHQLWTRTAVIGGYVTFANVNSGKCLEVAGASTANGAALDQASCTAGANQQWMVV
>CP032427.1|AYC43387.1|8627990_8630576_+|hypothetical-protein
MTPERIPTVAAPTAEHHREPFGIGESAPRLSWKTTAPTGWTQHAYQIEATRADGTDRTDWVASPDSVLVPWPLPPLGSREACAIRVRVRGADQVAGDWSPPLHIETGLLAPGDWMAQAVSPRGSDSDRRPPLLRKEFTAASDIERARLYVTAHGLYEIEINGRRVGDHALAPGWTSYHHRLRYQTHDVTEHLRAGANAIGAWLADGWYRGRLGFGGGHADLYGDRVALLAQLEIVHRDGSVTVIGTDPSWRAGQGPILSAGLLDGETYDARQELPGWSSPGFDDCDWSPVDVVPRDPATLVAPTGPPVRCTEEIHPVLVTALDDDRLLVDFGQNLVGRVRITVSGPAGHTVVIRHAEVLQDGELCVRPLRGATSTDRYTLRGGGPETWEPRFTLHGFRYAEITGWRGGGFPGRDIVARVHHTDMARTGWFTCSNDQVNRLHQNVVWSLRGNFVDLPTDCPQRDERLGWTGDIQIFAPTAAFLYDCHGMLGSWLRDVAVEQHDDGTVPWYVPEIPGGEQWTPARPGAGWGDVVALTPWDLYRASGDTGLLAAQYDSARRWVDLVTRLAGPSGLWNRGYQLGDWLDPFAPPDDPGAGRTDRHLIATAYYAWSARHVAWTAGVLGRPDEGDRYGDLADRVRQAFVDAYVLPGGRMTSDTQTAYAVALQFDLLPDTEARAAAGSRLAELVAEGGHTIQTGFIGTPLVAPALSATRHDDTAYALLLQQECPSWLYALKHDATTVWERWDSMLPDGSVNPGEMTSFNHYALGAVAEWLHGTVAGLGASEPGYRGIVFRPRPGGGITWAHAAHESPYGRVEIRWDLDESGLTVRATVPTGTTARVDWPDGGVTVLPTGTTTVRRAHHR
>CP032427.1|AYC43386.1|8627097_8627994_+|Inner-membrane-ABC-transporter-permease-protein-YcjP
MTDTLTAPPRELLPAPRPATVRKRGYARRLTRNLLVALLVLVEVTPLLWLLLSSFKTQSEFVNDPAWSLPGKWDFHNYADAWTTGHVALYLRNSLLATVPSLALIILLGTAAGFALEVMIWRGRHQVLLVFLVGIMVPSQMILLPLFRVYFQSGLSGTLWPLIITYTAVGLPLTVFMMATYFRAVPREMFEAATLDGAGMLTAFWRIGFPVVRNAVFTVALVQFFFIWNDLLVSLTFTTNDDLRTVQVGLLNFTGQYGETAFGPLFAAISINVVGALVLYLLINQRIIKGLTAGAVKG
>CP032427.1|AYC43385.1|8626206_8627091_+|Lactose-transport-system-permease-protein-LacF
MRSVLGDRRAIAVLLGPALLVYTLVMLVPMGWSLGYTFFKGNVIEGFTFGGLGNFEKLWHDPQAHSALWFTFKYALAVSAGQVLCGYLLALLYVFVLRRSSAVVRTLVFFPVILPTVAVALMFQKLFAVAPQNGLANIALEGLGVHHGDWFASAGGSFVVLVVMDVWRSMGFYGVLIFAGLLDIPEETLESARLDGATGWRLIRHIVLPLSAPVLLSSVVFSINGTLKVFDSVLALTNGGPGSGTTPLTLYMFRTAFSYGDYGYGSTIASLLTVVCLGVTLVVFRFSRRDLTKG
>CP032427.1|AYC43384.1|8624845_8626156_+|Multiple-sugar-binding-protein
MHNTLRNTLRIRRVALVATAATSALLLSACGGGSGAGSAAKEFSLTINDDNHIVQQELTTLGKGACAAQNKALPLKIQTLPIGNVDQKVQLLAGQNALPVQFAAGGTPQLTKTLDKAGQVLDLERTLKDLGVWDDLQPAAIKTVENLYGKFNVMPYQFNIEGIWYNKKLFADQHVATPTTYDQLVAAAAKFKGAGVTPFAADGKDGWPLTRLISGYLYRELGPDALQAVADGKAKLTDPAYVKAAQAVADLGKAGYFGQGVGSIDYDTATQQFLTGKAAMFYMGSWALGDFNDKTKNRIGADNVGFMPFPTVAGGKGSADQIPANVGLPVAVSAKSYDAKVGDWLTCITKNYGAASLKDQGTVSGFKPNGDTGTLPPLTQTVQDTISKTTTSTLWFEALFNTKATETSQTNAAPLVTGSLSAKDFMQKIQTDLDNG
>CP032427.1|AYC43383.1|8623555_8624554_+|HTH-type-transcriptional-regulator-DegA
MQDVADAAGVSVGTVSNVLNHPAKVSPATAERVREAIGRLGFVRNDAARSLVSGSTKSIGMVLADIENSLFIDMAHGAQDAARAIGQNLLLANTACDMRLQDDYLDLFDESRVTGVLLAPMEDSTAGIARIRSHGRQVVLLNYAPRPGTCCSVLVNNEHVGYLAARHLIDTGRTRLAYVVAHDDYQPVRDRRRGVRAAVEEAGPGVTLEEIDSVGLTTSHGHVVGAELARRAPEELPDGLVVVTDELANAIIHELHTVAGIRVPDQVAVVGCENNRAAGAAAVPLTAVDMPGRMMGQEAIRLLMDEVASGKQHRHATVVLEPELIVRSSAPN
>CP032427.1|AYC43382.1|8622341_8623130_+|hypothetical-protein
MERWKGHVTRHPVCGAVELTLAWHVVLLLFAKVLLPPLAPAWFPGLGATVINVICLAGVWCVLWRWGWLRVSGTTTFGRRRRWWLALPMLLIAGSYALAGLDGRTTVVVSSLVSLLWVGIDEEVYSRGLVQQTLTPLGPLRAATGVAVLFGLGHLQNHLFFGAAWDDTLWQMLSAALFGFTCAGLRFAIGSVWPMVVVHALDDFFQIRSPGSAPDWWQVSVYVFQAAYGWWLLRRYADRDRLPPRNAAGDDDPRPEAAGALD
>CP032427.1|AYC43381.1|8620882_8622094_-|hypothetical-protein
MTDTSNARPAEGEAQAPRQSRLLRLMRYLPLIAPVLLWAVPCWVLLFTGQHWPLPVTVAGTALFVLGLAAMPLAMMRGHGRRQQDRAAIIGDTLLGGSWVLFTWSVLLGILLRLALTVAGVGQSEDRARIVTWAVLGVSAALLVWGYVEARRVPRVRRLDVPLPRLGAGLDGLRVVLITDTHHGPLDRARWSARVCETVNTLEADLVCHTGDIADGTAERRRAQATPLATVRATEARVYVTGNHEYYSEAQGWVDLMDELGWEPLRNRHLLLERGGDTLVVAGVDDVTAESSGLVGHRAHLAGALDGADPELPVLLLAHQPKFVDRAAAAGIDLQLSGHTHGGQIWPFHHLVRLDQPALAGLSRHGVRTLLYTSRGTGFWGPPFRVFAPSEITLLVLRSAQQR
>CP032427.1|AYC43380.1|8619610_8620615_+|PEP-dependent-dihydroxyacetone-kinase,-dihydroxyacetone-binding-subunit-DhaK
MKMLINSPETVVADALSGLAAAHPDLDVDVERRVVVRRDARESGRVGLVSGGGSGHEPLHAGFVGYGMLSAACPGEVFTSPVPEQMLRAASAVDAGQGVLFVVKNYTGDVLNFQMAAELAEEDGVRVESVLVNDDVAVTDSTYTAGRRGTGATLFVEKIAGAAAEAGAPLEQVAEIARRVNECSRSFGVALSACSTPASGGPTFDLPDGEMELGVGIHGEPGRERRAMMPSREIAEVAVGAVFEELRELPPADGPVLALVNGMGATPLLELYGFHAEVARLLEARGVPVTRALVGNYVTSLDMAGCSVTLCRADEEMLRLWDAPVQTAALRWGR
>CP032427.1|AYC43391.1|8633179_8634448_-|N-acetylglucosamine-repressor
MAVRNGRTVRDLRRGNRTAVLQRLYFDGPMSRFALAPATGLSAGSISNVVADLIADDLVEEAGTVESDGGRPRTLLRVAPGGGHMIGVDVGETRVRVELFDLTLTELARTERPLEHHGYDVEVVVGHIRDGVAEVLAATGIAPEQLLGVGIGVPGIVARAPGQGAVVHGQTIGWDAVPLEALLRSSGELPDSVAYFIDNGARTLGQAELWFGAGRGCRNAVVVLFGSGVGACLVTEDMEYGRPLEWGHLTVQVGGRRCRCGARGCLEAYAGAESMLERWREEGGRPPRGVDEESALTAMLRAAHPDTGDGDEGGREADAVALAVLEETAEYVGAGLSDLINLFQPERILIGGWAGLQLGPRLLPAVRRYADAHALRHPAERVSIDLGELGPDAVTVGAASLPLADFFARGGQRGDRGGVREG
>CP032427.1|AYC43392.1|8634604_8635921_+|Maltose-binding-periplasmic-protein
MRRTRVAAAGAVTASLLTLVTACGGGSSTSDGSNDSPKTLTYWASNQGASIEVDKKVLQPELDKFEKQTGIKVKVEVVPWSDLLNRILTATTSGQGPDVLNIGNTWSASLQATGALLPWNAKNYAAIGGKDRFVDSALGSTGAQGQDPAAVPLYSMAYALYYNKQLFADAGISKPPATWDELIADGKKIQAKGKSALGAEGANLSENIHHVFVFAKQHGGDFFTPDGKPDFTNDKVVAAVKQYVDLMAKDKVIPTGDAEYAQNQSVSDFAKGNQAMLLWQSASANLESQGMSADKYGIAPVPVQSGTPGTGTQVNSAVMGINLAVFKNTDNIDGAKKFVKFMTSDAEQKILNTAYSSIPPVKSVQSDSTFSSGANKVLKDTLATSAAALPQVADESQFETAVGTAVKELFADAAAGRAVTTDSVKAALEKAQQQMPTK
>CP032427.1|AYC43393.1|8635926_8636919_+|Inner-membrane-ABC-transporter-permease-protein-YcjO
MTTTAPAEQAVDKTPSGAAHPHPRHRPGRIRRIGLPYLLLLPALLLELLVHLVPMVIGTVMSFKELTQFYIRDWGAAPWSGLDNYKVSVDFDAPVGEALLHSFLVTVAFTLLSVGLCWLIGTAAAVFMQDTFRGRGLLRALFLVPYALPVYAAVITWVFMFQHDNGLVNHVLHDQLHLTDKPSFWLIGDNSFWALLTVSVWKGWPFAFLIVMAGLQNIPGELYEAAALDGAGLWQQIRRITLPSLRPVNQVLLLVLFLWTFNDFNTPYVLFGRSAPEAADLISVHIYQASFVTWNFGTGSAMSVLLLLFLLVVTGVYLLLTTRGRKPADV
>CP032427.1|AYC43394.1|8636911_8637772_+|Inner-membrane-ABC-transporter-permease-protein-YcjP
MSSPNSPMAPPRSFLWSRRIFLTLLTGFVLLPVYVMVSSSLKPLADVTGQFHWLPSELTIRPYIDIWSTIPLARYFVNSLIVAGAATVCSVVIAVFAAYAVSRYDFRGKRVFTVTVLSTQMFPGILFLLPLFLIYVNIGNATGIALFGSRGGLILTYLTFSLPFSIWMLIGYLDSVPRDLDEAALVDGCGPLGALFRVVVPAAIPGIVAVAVYAFMTAWGEVLFASVMTNDTTRTLAVGLQGYSTLNNVYWNQIMAASLVVSVPVVAGFLLLQRYLVAGLTAGAVK
>CP032427.1|AYC43395.1|8637792_8639154_+|Beta-glucosidase-A
MTIDLAALPHDFLWGTATAAYQIEGAAAEDGRSPSIWDTFSHTPGKVAGGDTGDVACDHYHRWREDIDLMRRLGTNAYRLSVAWPRVVPGGDGPVNAKGLDFYDELIDGLLAAGITPSVTLYHWDLPQVLQDRGGWPARDTAEHFASYASVVAARLGDRVKHWTTLNEPLCSAWIGHLEGKMAPGLTDLTAAVRASYHLLLGHGLATRAIRAAAPGAQVGIVTNLSTIHPATDRPEDFEAARRMDGHTNRWWLDPIHGRGFPEDMREVYGVELPERAGDLETIAAPLDWLGLNYYMPATVADDPDGPAPRVREIARPGVPRTGMGWEIDASGIETLLLRLTHEYGARRLYVTENGSAYPDVVRPDGTVDDPERQKYLIDHLAACASAARKGAPLAGYFAWSLLDNFEWAYGYEKRFGLVHVDYRTQKRTIKGTGHRYADVIRAHAESGGRRAA
>CP032427.1|AYC43396.1|8639206_8639767_+|hypothetical-protein
MENAGHRLGLAIKLEAEPSRHRVAAVRRELRKTGAFSLGQGIWAVPDVPVLGDGVARTLALTEKAGGQAMALTASGGGPQDAARLRELFGAARSADWAEFLADCGRFEEEPAKDIRIAKFTLTELEEGEQSPERLRGRHRDLTARAASGTPEAARAGERLGRRTAACEDYAEQVFAALHEIPADQR
>CP032427.1|AYC43397.1|8639763_8640942_+|Multidrug-resistance-protein-MdtH
MNPTEAPRQAAPARAMWPLYAAGFTTAFGAHGIAANLGGFSDDAVTSLLVLGGLLALYDGAEVVLKPLFGSLADRIGARPVLLGGLVAFAVASGLYVVADSPGWLWAARLGQGAAASAFSPSASALVARLNPAAGHGRAFGSYGFCKSVGYTLGPLLGGVLVWAGGLRLLFAVLAVLGAAVAVWAAVAVPVVPPLPKARQTVLDLARRLADPVFLAPTAALAGATAALSVGVGFLPVSGRAAGLGTVATGAAVSVLAACAALVQPRAGRALDEGRLTARSGLLAGLLVTAAGLVCAMLPGLAGVLCAAALIGAGTGLITPLGFAVLASSTPPERLGQTMGSAELGRELGDAGGPLLVASVATATTLTYGYAALAVLIAAGPLVVLAHRPGKR
>CP032427.1|AYC43398.1|8641108_8641801_+|hypothetical-protein
MEWREFAESMAQLARNLLAQDSVQGTLDEIAASAVRLVDGCDAAGILALRKGRAVTLSSCGDVVEASDRLQGELAEGPCFDLAQHPDGERVYRIADLREPQPSWPRFAVAARELGIGSMTGVLLYTHDDDFGALNLYSRRPGAFGKDIETAGWLLASHAAVAVADARTIDQLEDAMKSRHAIGEAMGILMERHGLSEDDAFSVLRRISQHHNIKLRDVAQRVRKDRPDQT
>CP032427.1|AYC43399.1|8641867_8642854_+|Epimerase-family-protein
MKFVLPGGTGQVGTVLDRALTAAGHEVTVLTRRPTRPHHLAWDGVTLGHWAEAIDGSDVVINLAGRSVSCRYTAENLRAMMHSRVDSARVVGEAVAAAARPPRVWLQMSTATIYAHRFDAAQDETTGVIGGSEAGVPDYWAHSVEIAKNWERAQTEAPTPATRKIALRAAMVMSPDRGGVFDVLSRLVRLGLGGPVAGGAQYVSWIHADDFVRAVGFLIARDDLSGPVNLASPGPLPHRDFMRALRTAWGVPAGLPATRWMAELGAFALRSDTELLLKSRRVTPGRLRSAGFTFEHPEWNTAAKDLVRRSRPTHATGDRRRTPTSRAA
>CP032427.1|AYC43400.1|8643284_8644925_-|Phosphoglucomutase
MQNARAGQVAGPEDLIDVARLVTAYYALHPDPAEPGQRVAFGTSGHRGSSLAVAFNEDHIAATSQAICEYRAAQGTDGPLFLGADTHALSEPARITALEVFAANDVTVLIDEADGYTPTPAVSHAILAHNRGRTSRLADGVVVTPSHNPPADGGFKYNPPSGGPAGSEATSWIQDRANEIITGGLKDVRRIPYSRALAAPGTGRYDFLGTYVADLPAVLDLEAIRSAGVRVGADPLGGASVAYWGRIAEQHRLDLTVVNPLTDPTWRFMTLDWDGKIRMDCSSPYAMASLIEQRDRFDIATGNDADADRHGIVTPDAGLMNPNHYLAVAISYLFSHREQWPAGAGIGKTLVSSSMIDRVAADVGRPLVEVPVGFKWFVDGLSDGTLGFGGEESAGASFLRRDGSVWTTDKDGIILALLASEITAVTGKTPSQHYAGLTDRFGAPAYARVDAPASREEKALLAKLSPRQVTADTLAGEPVTTVLTEAPGNGAALGGIKVATANAWFAARPSGTEDVYKIYGESFLGQDHLHQVQEEARSVVLGALES

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Crispr_ID: CP032427_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_19

8800716-8800785

Orphan

Consensus_repeat	Method
CGGCCGGGCTGGTTCGACCGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_19

>merge|CP032427|19|8800716-8800785|CRISPRCasFinder
GGGCGGGGCGGGGCCGGCCGGGCTGGTTCGACCGGGCCGGGCGAGGTCGGCCAGGAAGGTTAGACCGGGC

>CP032427|19|18|8800716-8800785|CRISPRCasFinder
GGGCGGGGCGGGGCCGGCCGGGC	TGGTTCGACCGGGCCGGGCGAGGT
CGGCCAGGAAGGTTAGACCGGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC43537.1\|8804541_8805096_+\|FMN-reductase-(NADPH)	unknown	unknown	gnl\|CDD\|274653
CP032427.1\|AYC43533.1\|8800532_8800700_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC43534.1\|8800874_8801795_-\|Hca-operon-transcriptional-activator-HcaR	unknown	unknown	gnl\|CDD\|223656
CP032427.1\|AYC43535.1\|8802127_8803243_+\|Alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|274923
CP032427.1\|AYC43531.1\|8797715_8798219_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224759
CP032427.1\|AYC43527.1\|8792662_8793325_-\|ECF-RNA-polymerase-sigma-factor-RpoE	unknown	unknown	gnl\|CDD\|237125
CP032427.1\|AYC43528.1\|8793486_8794608_+\|HTH-type-transcriptional-repressor-CarH	unknown	unknown	gnl\|CDD\|133379
CP032427.1\|AYC43526.1\|8792004_8792445_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367653
CP032427.1\|AYC43529.1\|8794582_8795956_-\|Deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|223492
CP032427.1\|AYC43543.1\|8810274_8811597_+\|Aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143406
CP032427.1\|AYC43536.1\|8803256_8804474_+\|Dibenzothiophene-desulfurization-enzyme-C	unknown	unknown	gnl\|CDD\|173852
CP032427.1\|AYC43530.1\|8796082_8797609_-\|3-beta-hydroxysteroid-dehydrogenase/Delta-5--4-isomerase	unknown	unknown	gnl\|CDD\|187556
CP032427.1\|AYC43525.1\|8791184_8791970_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270700
CP032427.1\|AYC43538.1\|8805101_8806286_+\|Dibenzothiophene-desulfurization-enzyme-C	unknown	unknown	gnl\|CDD\|274924
CP032427.1\|AYC43540.1\|8807489_8808536_-\|putative-acyl-CoA-dehydrogenase-fadE25	unknown	unknown	gnl\|CDD\|224871
CP032427.1\|AYC43539.1\|8806316_8807459_+\|Alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|234821
CP032427.1\|AYC43532.1\|8798390_8800457_+\|Putative-membrane-protein-YdgH	unknown	unknown	gnl\|CDD\|225272
CP032427.1\|AYC43542.1\|8808986_8810174_+\|putative-ECF-RNA-polymerase-sigma-factor-SigI	unknown	unknown	gnl\|CDD\|227277
CP032427.1\|AYC43524.1\|8789606_8791052_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274627
CP032427.1\|AYC43541.1\|8808630_8808987_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC43537.1\|8804541_8805096_+\|FMN-reductase-(NADPH)	gnl\|CDD\|274653	TIGR03567, FMN_reductase_NADPH, FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566). [Central intermediary metabolism, Sulfur metabolism].	1.77917e-78
CP032427.1\|AYC43536.1\|8803256_8804474_+\|Dibenzothiophene-desulfurization-enzyme-C	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	4.32845e-138
CP032427.1\|AYC43534.1\|8800874_8801795_-\|Hca-operon-transcriptional-activator-HcaR	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.47434e-34
CP032427.1\|AYC43535.1\|8802127_8803243_+\|Alkanesulfonate-monooxygenase	gnl\|CDD\|274923	TIGR04021, LLM_DMSO2_sfnG, dimethyl sulfone monooxygenase SfnG. This family of FMNH2-dependent members of the luciferase-like monooxygenase (LLM) family includes SfnG, a monooxygenase that converts dimethylsulphone (DMSO2) to methanesulphonate. This step can be followed immediately by methanesulfonate sulfonatase (an alkanesulfonate monooxygenase - see TIGR03565) for the FMNH2-dependent conversion an inorganic form. [Central intermediary metabolism, Sulfur metabolism].	0
CP032427.1\|AYC43528.1\|8793486_8794608_+\|HTH-type-transcriptional-repressor-CarH	gnl\|CDD\|133379	cd01104, HTH_MlrA-CarA, Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.	7.10293e-21
CP032427.1\|AYC43527.1\|8792662_8793325_-\|ECF-RNA-polymerase-sigma-factor-RpoE	gnl\|CDD\|237125	PRK12519, PRK12519, RNA polymerase sigma factor; Provisional.	2.113e-37
CP032427.1\|AYC43531.1\|8797715_8798219_+\|hypothetical-protein	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	3.46969e-12
CP032427.1\|AYC43526.1\|8792004_8792445_-\|hypothetical-protein	gnl\|CDD\|367653	pfam03779, SPW, SPW repeat. A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices.	2.01786e-12
CP032427.1\|AYC43529.1\|8794582_8795956_-\|Deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	2.28795e-124
CP032427.1\|AYC43543.1\|8810274_8811597_+\|Aldehyde-dehydrogenase	gnl\|CDD\|143406	cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.	0
CP032427.1\|AYC43530.1\|8796082_8797609_-\|3-beta-hydroxysteroid-dehydrogenase/Delta-5--4-isomerase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.63273e-147
CP032427.1\|AYC43525.1\|8791184_8791970_+\|hypothetical-protein	gnl\|CDD\|270700	cd05151, ChoK-like, Choline Kinase and similar proteins. This subfamily is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate and displays negligible activity towards N-methylated derivatives of Etn. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	2.12612e-08
CP032427.1\|AYC43538.1\|8805101_8806286_+\|Dibenzothiophene-desulfurization-enzyme-C	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0
CP032427.1\|AYC43540.1\|8807489_8808536_-\|putative-acyl-CoA-dehydrogenase-fadE25	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.54185e-17
CP032427.1\|AYC43539.1\|8806316_8807459_+\|Alkanesulfonate-monooxygenase	gnl\|CDD\|234821	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.	2.41517e-171
CP032427.1\|AYC43532.1\|8798390_8800457_+\|Putative-membrane-protein-YdgH	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	4.84458e-78
CP032427.1\|AYC43542.1\|8808986_8810174_+\|putative-ECF-RNA-polymerase-sigma-factor-SigI	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	1.95652e-148
CP032427.1\|AYC43524.1\|8789606_8791052_+\|hypothetical-protein	gnl\|CDD\|274627	TIGR03521, gliding_motility_protein_GldG, gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.	0.000793779
CP032427.1\|AYC43541.1\|8808630_8808987_+\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	2.07443e-23

>CP032427.1|AYC43533.1|8800532_8800700_+|hypothetical-protein
MSAKVLERFPAGAPRGSWPAEEYAAQRRAQGEPATVVMDIQSDAFLVVVPGRDED
>CP032427.1|AYC43532.1|8798390_8800457_+|Putative-membrane-protein-YdgH
MSPAARRTRVLVPLLLLALWLVAGGALGPFAGRLGEVATNDQAAFLPRSAESTAVIAEQKAFRQQETLPVIVVWTGPAVADRKADADRVLGTLKSVPGVAGQVSPAIPSEDREALEGVVPLRPDLGDALPGTLDRIRSAAEHVPGATVQLAGPAATQADLSDAFAGIDGLLLAVALAVVLLILLLVYRSVLLPLVIILGAVFALGTACAVVYALADHDIVRVDGQVQGILSILVIGAATDYALLLTARCREELARGADRFTAARAALRRSWAAIVASAATVALGLLALLLSDLTNNRALGPVGAIGIACAVLTSLTFLPAALALLGRAAYWPARPRPADERPEGVWHRIAALVDRAPRKVWALTLVVLLAGAAFAPALTSRGVPLDETFVDDAPSVAAQQALSRHFPAGSGNPAVIVADADRLTDVVRAARDTEGVASAAAVSASGRPGADPLVVDGRVRVDVTLTAAPDTDTAKETVARLRTALHEVPDADALVGGYTAQQYDTLRTAEHDRTLIVPVVLAIILFILVVLLRSLLLPALLVATVALNFLTTLGVSALVFRHVFGFTGSDPSVPLYGFVFLVALGVDYNIFLMSRVREESLRHGPRQGMTRGLVTTGGVITSAGVVLAATFAALGVIPLAFLAQIAFIVAFGVLLDTLVVRSLLVPALVRDIGARVWWPTSVGGTDKT
>CP032427.1|AYC43531.1|8797715_8798219_+|hypothetical-protein
MATPNQREQDARPESGTGGAPTDLYAFAVRLRRMNGEINRLVQGFAGDHGLHATDIQALGAIMDADEPMTPSGLRRHLGLTSGAVTACVDRLERAGHIRRVRESADRRVVHLRYEPDARAAARSYFRPLAEATEAARSRFGEQELSVVVRFLEALNEELAEARPGGR
>CP032427.1|AYC43530.1|8796082_8797609_-|3-beta-hydroxysteroid-dehydrogenase/Delta-5--4-isomerase
MDHDDTRPRPRCLVTGATGYIGGRLVPELLDAGYRVRCLARSPGRLRDHPWIDRAEVVGGDVTDPGSVARALDGVDVAYYLVHGMGSGKDFEETDRRAARIFAEQARIAGVRRIVYLSGLTPAGVPESELSPHLRSRAEVAHILLDSGVPTTILRAAVVIGSGSASFEMLRYLTERLPVMVTPSWVHTRIQPVAVRDVLRALVGSASMPSDVSRAFDLGGPDILTYRQMMHRYAAIAGLPRRIILPVPVLTPRLSSHWVGLVTPVPASLARPLTESLRHEVVCHENDIARYLAGPPAAPIGFDDAVRLALQRVREAKVTTRWSSASVPGAPSDPLPTDPDWAGGSLYSDHRELEVDASPEALWRVVEGIGGENGWYSFPLAWAVRGRLDRLVGGVGLRRGRRDAARLRVGDSLDFWRVEEIEPGRLLRLRAEMRLPGLAWLEMSVERGENGRTRYRQRALFHPHGLLGHAYWWSVSPFHAVVFGGMARNIARTAASSAAHRPEHATVP
>CP032427.1|AYC43529.1|8794582_8795956_-|Deoxyribodipyrimidine-photo-lyase
MSISVVLFTCDLRLHDHPPLRAALDGTEEVVPLFVRDRGVDASGFAVPNRLAFLADCLHDLDAGLRERGGRLVVRSGDLVEEVCKVAAEADADEVHMAADASAHAHRRERRLRRALEGEGVRLHVHDTVSTAVAPGAVAPAGSDHFAVFTPYFRRWSEQRLREPHGAPTAVRVPEGVGSESLPSRADLSGLSEGLAAGGEIAGRKSLATWLRSGVAAYEDRHDDLAGDATSRLSPHLHFGTLSPVELVHRARRAGGPGAEAFVRQLAWRDFHRQVLAARPAAADTDYRTQHDRWRSEKAARADVEAWKEGRTGYPVVDAAMRQLRHEGWMHNRGRLLTASFLAKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWMAGTGTDTRPNRVLNPVIQAKRYDPDGAYVRRWVPELAGLEGPSVHEPWKLRGLDRAAFDYPDPIVELYEGLARFKRARGRD
>CP032427.1|AYC43528.1|8793486_8794608_+|HTH-type-transcriptional-repressor-CarH
MRDIPEGGGPSARPEPASSRDTATSLTTGALARRLGVSPTTLRSWDRRYGIGPAVRADGRHRRWTAPDIAVLETMCRLTSAGVPPAEAARAAKRSASPEPAGTPLPAGPAEPADGPDPDAPPEPMPRSRAAGTLPLGDVRQECRGLARAAVRLDAPAVQEQLAAAVETHGLAVAWQEVMVPTLHAVGRKWASSGDRYVEVEHLLSWHMSTVLRRSTRPPARHADAPGPGPVVLACVPGEQHTLPLEALNAALTELRLPARMFGAAVPAEALIGAVERLGPAAVVLWSQVRSTASFPLARHLVGTGWGVKGARRRPLVVLGGPGWAGRSGQGMLRPTSFQDALDTLAALYGAGSRKPAGPHGRESGLSRGPGRA
>CP032427.1|AYC43527.1|8792662_8793325_-|ECF-RNA-polymerase-sigma-factor-RpoE
MDAQSTLPAVPPGTAAGEPRWAVSEPPSAWTLPEVAPGEEELARGLLAGDEACLTLAYHRWSPLVHTLARRSLGDPSEAEDVTQQVFIGLWRGRRGYRPERGTLGGWIVGITRRKVADALRARSRRFDLAVRADARVVLPPHTEDRTEATVDGLVVRAELAKLPSAQQRVLRLTFYEDLSQIQIAERTGWPLGTVKSHARRGMHRLRRGLEFAFDAETVR
>CP032427.1|AYC43526.1|8792004_8792445_-|hypothetical-protein
MADVSHNRGDITSHPDASEMRERYARMLSGRDVALVDGPVFLLGLYCAASPWILHYTTSQPALVTHNLIVGIAIGLLALGFTQTPERMYGLSWAFCAVGIWMIIAPWVVGDSPDAGVALNNIVIGALAVILGLMCTATAARSAPRP
>CP032427.1|AYC43525.1|8791184_8791970_+|hypothetical-protein
MEEAALGGGAVNEVVRTGDTVRRTPSQRPGFVRELLGLFERAGWPGAPRFLGVDEQGREMFGYLEGRAAVTSCEHTAARTDEALVEVARLVRAFHDLTHGTALAGDQDVVCHNDLAPKNTVYDDLPPKNTVYTDLAPKSTVRTEWRPVAFIDWDLAAPGERVHDLAHVCWQYLGLGPGVTDVRDAARRIRLICDAYGLDERGGLLDTVRWWQDRCRRGIEAGALRGEPAMVRLRAGGAVDEVRAAEEWVARHRRELDAFLD
>CP032427.1|AYC43524.1|8789606_8791052_+|hypothetical-protein
MLGLTGPRHRAGALLAGLALVTAGVAVQATATPAVAATPHRILFDDGHAEEAGNADWIISTSKPDPLAQDSSPSSETDWTGALSSWGVALQKTGNYSLKTATSALTYGGTSATDLSKFDTLVLPEPNTLFTTAEKTAIMTFVKNGGGLFMISDHTGSDRNNDGEDAVEILNDLMTDNSVDSTDPFGFSIDSLNIGSDYPSAVSDSTNPVLHGSFGTVTKSLIANGTTATLKPADDSAVKGLVYRTGYSGNTGAFFATSTFGSGRVAFWGDSSPVDDGTGQSGNTLYDGWNDSGATNAALALNATEWLSGASGSSGGGTGGGTGTCTAAQLLGNNGFESGSTTWTGTSGVITNSSSQSARTGSYYAWLDGYGKATTDTLAQTVTIPSGCTTAALSFYLHVDTAETSTSTAYDTLKVQVLNSSGTVLGTLATYSNLNAASGYTQRSFSLASYAGQTVTLKFTGTEGSTLQTSFVLDDTALNVS
>CP032427.1|AYC43534.1|8800874_8801795_-|Hca-operon-transcriptional-activator-HcaR
MRTEQLEYIAAVTRLGSLRRAAEELRLSQPALSETVRNLERELGVDLLERKRSGATMSAEGRELLPHIVGVLEAVDRLRAAAGEQHRISRMVRVGTVNAATVPLLIPAVEDFRAAHPVTQVEVVGAQQTEIHRALSEGGFDLGLVNHLDGDDTPAGFESTRLLRGRPVVCLRPDSPLAARTCVRVDDLLTQPLIAMRTGYVMHRFVHRLLDGRDASFAYSTDGAEMGKLMVAEGLGVTVLPDFSVVGDPLERQGTITHRPIEGDATRVLLMLQRRRAESVPRAAHDLHEVFVRRARQLGGTLTPPG
>CP032427.1|AYC43535.1|8802127_8803243_+|Alkanesulfonate-monooxygenase
MPAAPVKFAYWVPNVSGGLVTSKIEQRTDWGYDYNRELAVLAENNGFEYALSQVRYMASYGAEYQHESTSFSLALLLATERLKVIAAVHPGLWHPGVLAKLGATADHLSKGRFAVNVVSGWFKGEFTALGEHWLEHDERYRRSEEFITALRRIWTEDHAELAGDFYRLRDFSLKPKPLNTEERPHPEIFQGGNSTAARQMAGRVSDWYFSNGKDFDGVTEQITDVRKAAAEVGRSAPKFGLNGFLIARDTEAEARDTLREIVAKADHEAVEGFGAAVKQAGQSTGDKKGMWQDSSFEDLVQYNDGFRTGLIGTPEQIAERIVAYRKLGVDLLLLGFLHYHEEVEYFGRRVLPLVRELEAQLPDHEPVPAQV
>CP032427.1|AYC43536.1|8803256_8804474_+|Dibenzothiophene-desulfurization-enzyme-C
MSTVTRTDWQNRPAPETAADWIARAAEVAAVLATDAAARDRAGNTPYAEVRLLKDAGLVTLLGPAEHGGGGQDWPTAYRVVREVAKADGSIGQLLGYHYLWFWAARLVGTREQWEHVEAEASRNRWFFGGAVNPRDQDVVVTEDGDDLVYTGRKSFSTGSKVSDVTVLEGVLEGTDQHVFAIVPSDSEGLTFHDDWDNIGQRLTESGGVTLDGVRTPWSSAAGYVDKVFQPRVYNTLNVPTIQLVFVNFYLGIAGGALETAATYTREKSRSWLHGGFERAVDEPYVIDTYGDLTAKLWAAEALADAVAAEGQKLHDDPDAVTEKTRGDFEVRVAAVKARATDVALEIAGRIFEVTGARSTATSEGLDRFWRNVRTHTLHDPVAYKRREVGRWVLEGELPEPTWYS
>CP032427.1|AYC43537.1|8804541_8805096_+|FMN-reductase-(NADPH)
MATVLSVSGSPSASSRTNRLLRHLDRRLAAQGHEVIPLDVRTIPAEALLGADFTHPAIVEATELFARVDGVVVGTPVYKASYSGVLKALLDLLPQYALAGKTVLPLATGGSTAHVLAIDYALRPVLSSMGAAHIVQGWFTLDKDITVHDDGSLTVAPVAGEALAQVVDQFSTALGHRPVLAAAS
>CP032427.1|AYC43538.1|8805101_8806286_+|Dibenzothiophene-desulfurization-enzyme-C
MSAHVIADDAEALAAAASLAAEFRTGAAARDAERRLPRAELDRLSASGLLAVTVPAEHGGADVAALTLAEIFRLLASADASLAQIPQSHFAYVNVIRRQGTDEQRKFFFAELLAGRRFGNAQSEAGTKHVQDIRTRLHPLPDGSYRLEGVKHYSTGALFADWIPVLARAGDDKLHVAYVPSDAPGVTVVDDWDGLGQRTTASGTVRLDGVEVPADRVLPHHLTFEGPQLHGAVAQLLHAAIDTGIAGGALAEAAEFVRTKSRPWFESGVDTAAEDPLLIQRFGELALQVRAAEALLREAARAVDRAQADLTDDSAAEASLAVAAAKVSAAQAAVEVASALFEVAGTRSALNSLNLHRHWRDARTHTLHDPTRWKIQHLGRHVLNGTRPPRHGLL
>CP032427.1|AYC43539.1|8806316_8807459_+|Alkanesulfonate-monooxygenase
MSLTFHWFLPTNGDSRHVVGGGHGTPATVSGQDRPPTVAYLSQIGRAAEDLGFVGALTPTGAWCEDAWLTTAMVSQNTERLKFLVAFRPGFVSPTLAAQMASTFQRQSGGRLLLNVVTGGESHEQRAYGDFLDKDARYRRTGEFLEVVRGLWEGKTVDLNGEHLQVEDARLARVPDPVPEVYFGGSSPIAGEVAAKYVDVYLTWGEPPAQVAEKIAWIRGLAAQQGRTLRFGIRLHVITRDTSEQAWAEANRLLAGFDAETVRSVQAGLSRSESEGQQRMLALHGGDRDRLEIHPNLWAGIGLVRGGAGTALVGSHDEVAERIKEYHALGIDEFVLSGYPHLEEAYWFGEGVLPRLAAQGLWHHPSGRTAAPAAQVPFAS
>CP032427.1|AYC43540.1|8807489_8808536_-|putative-acyl-CoA-dehydrogenase-fadE25
MTSAPHPLLATARTLADGLLAPQAARVDQEGVPVSHVEAIRRSGLLGVSAPVEYGGAGAPDAVAREVQEILAGACCSTWFVQTQHHTPVRMLAQTDLPVRERLLRPLATGELLAGIAFAHVRAFPRVPVRATAERGGWRFDGAVPWYTGWGLNDVMLLAGVTEADEVVFAFAEAREQAGLRASEPMRLAALTASRTVSLALDGLWLPDESVVLRTPQKQFALIDLPRNTNASPAVFGVAYAALRVLEDAGEPETAEALRGPLDEVRRQAYALAGHPVPHERVAERLALKTRSYDLMRTATTAAVVAGGGRATALDGTAQRLFREGMFLLVQGQTAEVRRAHLEALAKS
>CP032427.1|AYC43541.1|8808630_8808987_+|hypothetical-protein
MGYYLLNVMQPGWDELPPPEVMAEIGKRLDIFHQELHEAGAWVFAGGLHGPDASTVLRPRDGDVLITDGPYAEGKEQLGGLCIVKAPDLDAALEWGRKAALATTLPIEVRPFQHQSED
>CP032427.1|AYC43542.1|8808986_8810174_+|putative-ECF-RNA-polymerase-sigma-factor-SigI
MTLDIEAVFRAEYGRAVAVLVRFLGDIDLAEEAVQDAFATAVRRWPETGVPPSPAGWIITTARNRAVDRLRRESTREARHTEAALLHTPDPPPEEGPVRDERLRLLFTCCHPALAPQARVALTLRLLGGLTTAQIARAFLVPEPTMAQRLVRAKAKIRDARIPYRVPRDADLPDRLGGVLAVVYLIFNEGYGGTPELCEEAVRLGRLLTELMPDEPEATGLLALMLLIESRRAARTDDTGALVPLSEQDPTRWDRQLIAEGQSLVRRCLRRNRPGPYQIQAAIQAVHSEPPTDWDQVRRLYDQLMAVAPGPVVALNRAVAVAETDGPAEALALVDALDLDGYHVLHAVRADLLRRLDRGTEAADAYARAAELTENPAERTYLEGRRQALRSRHGK
>CP032427.1|AYC43543.1|8810274_8811597_+|Aldehyde-dehydrogenase
MNHPAPEQPADVVARLRATFRSGRTKPVEWRTTQLRRLRELLTENGTELAAALHADLGKSSTEAFRTEIDFTIREIDHTLDHLTDWLRPESAPVPAHLGADATAWTQYDPLGVVLVIAPWNYPAQLLLAPVVGALAAGNAVVAKPSELAPATSSAIARLVPAYLDTDAVAVVEGGVPETTALLAERFDHIFYTGNGTVGRIVLRAAAEHLTPVTLELGGKSPAFVDRDADLAVVADRLVRGKFLNAGQTCVAPDYVLTDPETAAALEPLFVKAVETLYGADPAASGEYGRIINERHFDRLTGLLDSGRTVVGGQSDRRAKYIAPTVLADVDPEAPVMREEIFGPILPIVTVDGLDAAIDFINDRDKPLALYVFTDSETTRGRIADETSSGGLGYGLPLAHLTVSDLPFGGVGESGMGNYHGRYSIETFSHRKAILEKPLV

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Crispr_ID: CP032427_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032427_20

9201883-9201981

Orphan

Consensus_repeat	Method
CGGCAGGATGTGCGGCTCACCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032427_20

>merge|CP032427|20|9201883-9201981|CRISPRCasFinder
CGGCAGGATGTGCGGCTCACCCCTGGGCGCCTCGCTGCGGCAGGATGCGCGGCTCACCTTTCGACACCCCCGCCGCGCCAGGATGTGCGGCTCACCCCT

>CP032427|20|19|9201883-9201981|CRISPRCasFinder
CGGCAGGATGTGCGGCTCACCCCT	GGGCGCCTCGCTGCGGCAGGATGCGCGGCTCACCTTTCGACACCCCCGCCG
CGCCAGGATGTGCGGCTCACCCCT

Protein	Signature genes	Signature genes Name	Protein_function
CP032427.1\|AYC43892.1\|9206822_9207701_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350097
CP032427.1\|AYC43889.1\|9203369_9204638_+\|Multiple-sugar-binding-protein	unknown	unknown	gnl\|CDD\|270451
CP032427.1\|AYC43880.1\|9193296_9194205_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226040
CP032427.1\|AYC43882.1\|9197055_9197571_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368218
CP032427.1\|AYC43885.1\|9200541_9200808_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226181
CP032427.1\|AYC43897.1\|9213900_9215595_-\|putative-glycosyltransferase-EpsJ	unknown	unknown	gnl\|CDD\|366154
CP032427.1\|AYC43894.1\|9210411_9210567_-\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC43890.1\|9204741_9205614_+\|Lactose-transport-system-permease-protein-LacF	unknown	unknown	gnl\|CDD\|224096
CP032427.1\|AYC43878.1\|9191585_9192080_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197670
CP032427.1\|AYC43895.1\|9210622_9211504_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270702
CP032427.1\|AYC43879.1\|9192158_9193241_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370363
CP032427.1\|AYC43883.1\|9197628_9199152_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366226
CP032427.1\|AYC43893.1\|9207830_9210311_+\|Keratan-sulfate-endo-1,4-beta-galactosidase	unknown	unknown	gnl\|CDD\|376716
CP032427.1\|AYC43898.1\|9215725_9216310_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC43881.1\|9194432_9196802_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379625
CP032427.1\|AYC43887.1\|9201432_9201849_+\|hypothetical-protein	unknown	unknown	unknown
CP032427.1\|AYC43886.1\|9200807_9201293_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378586
CP032427.1\|AYC43891.1\|9205629_9206544_+\|L-arabinose-transport-system-permease-protein-AraQ	unknown	unknown	gnl\|CDD\|223472
CP032427.1\|AYC43896.1\|9211708_9213772_+\|Development-specific-protein-S	unknown	unknown	gnl\|CDD\|214829
CP032427.1\|AYC43884.1\|9199570_9200494_+\|Mycothiol-acetyltransferase	unknown	unknown	gnl\|CDD\|132489

Protein	Function_ID	Function_description	E-value
CP032427.1\|AYC43892.1\|9206822_9207701_+\|hypothetical-protein	gnl\|CDD\|350097	cd08983, GH43_Bt3655-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 arabinofuranosidase Bt3655. This glycosyl hydrolase family 43 (GH43)-like family includes the characterized arabinofuranosidases (EC 3.2.1.55): Bacteroides thetaiotaomicron VPI-5482 (Bt3655;BT_3655) and Penicillium chrysogenum 31B Abf43B, as well as Bifidobacterium adolescentis ATCC 15703 beta-xylosidase (EC 3.2.1.37) BAD_1527. It belongs to the glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) which includes family 43 (GH43) and 62 (GH62) families. GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	3.26235e-68
CP032427.1\|AYC43889.1\|9203369_9204638_+\|Multiple-sugar-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.02323e-37
CP032427.1\|AYC43880.1\|9193296_9194205_-\|hypothetical-protein	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	2.68521e-16
CP032427.1\|AYC43882.1\|9197055_9197571_+\|hypothetical-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	1.74796e-41
CP032427.1\|AYC43885.1\|9200541_9200808_-\|hypothetical-protein	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	3.45639e-28
CP032427.1\|AYC43897.1\|9213900_9215595_-\|putative-glycosyltransferase-EpsJ	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.01439e-28
CP032427.1\|AYC43896.1\|9211708_9213772_+\|Development-specific-protein-S	gnl\|CDD\|214829	smart00812, Alpha_L_fucos, Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.	7.55228e-85
CP032427.1\|AYC43890.1\|9204741_9205614_+\|Lactose-transport-system-permease-protein-LacF	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.47665e-74
CP032427.1\|AYC43878.1\|9191585_9192080_+\|hypothetical-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.31743e-11
CP032427.1\|AYC43879.1\|9192158_9193241_-\|hypothetical-protein	gnl\|CDD\|370363	pfam09206, ArabFuran-catal, Alpha-L-arabinofuranosidase B, catalytic. Members of this family, which are present in fungal alpha-L-arabinofuranosidase B, adopt a beta-sandwich fold similar to that of Concanavalin A-like lectins/glucanase. The beta-sandwich fold consists of two anti-parallel beta-sheets with seven and and six strands, respectively. In addition, there are four helices outside of the beta-strands. The beta-sandwich strands are closely packed and curved with a jelly roll topology, creating a small catalytic pocket. The domain catalyzes the hydrolysis of alpha-1,2-, alpha-1,3- and alpha-1,5-L-arabinofuranosidic bonds in L-arabinose-containing hemicelluloses such as arabinoxylan and L-arabinan.	0
CP032427.1\|AYC43883.1\|9197628_9199152_-\|hypothetical-protein	gnl\|CDD\|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	4.90404e-20
CP032427.1\|AYC43893.1\|9207830_9210311_+\|Keratan-sulfate-endo-1,4-beta-galactosidase	gnl\|CDD\|376716	pfam02018, CBM_4_9, Carbohydrate binding domain. This family includes diverse carbohydrate binding domains.	4.00029e-08
CP032427.1\|AYC43881.1\|9194432_9196802_-\|hypothetical-protein	gnl\|CDD\|379625	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.	2.00987e-70
CP032427.1\|AYC43895.1\|9210622_9211504_+\|hypothetical-protein	gnl\|CDD\|270702	cd05153, HomoserineK_II, Type II Homoserine Kinase. This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a Protein Kinase fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. The Type II homoserine kinase subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	2.19279e-10
CP032427.1\|AYC43886.1\|9200807_9201293_-\|hypothetical-protein	gnl\|CDD\|378586	pfam11188, DUF2975, Protein of unknown function (DUF2975). This family of bacterial proteins have no known function. These proteins are likely to be integral membrane proteins. The proteins contain a highly conserved glutamic acid close to their C-terminus.	4.87121e-16
CP032427.1\|AYC43891.1\|9205629_9206544_+\|L-arabinose-transport-system-permease-protein-AraQ	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.70315e-67
CP032427.1\|AYC43884.1\|9199570_9200494_+\|Mycothiol-acetyltransferase	gnl\|CDD\|132489	TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	1.03515e-11

>CP032427.1|AYC43887.1|9201432_9201849_+|hypothetical-protein
MRQPEDELLAEALGRINKGGKFASRFLKNDVAEFDRELPLAFDPAVEHVRTVLVQLADGAAPEPLEAGADRVTFRVLTGGGYLSMNPVVVTMDATRKGEWTTTVHVRAVAKEGLVKQRAAQKTAERVAALLDGAGSTP
>CP032427.1|AYC43886.1|9200807_9201293_-|hypothetical-protein
MGKLAVRALRAVLVVVLTGTVGVQVLMVWALATDPEDGSMALTLMRLITILGMVSVQVTGVCVWRLVTMVRRGTVFSHGAFRYVDGIIGAITSASLLWFAVTAVNAPGQRDDPGVSVIMAGIGLAILGVALIVLVLRTLLAQAVARDVEAARMQAELNEVI
>CP032427.1|AYC43885.1|9200541_9200808_-|hypothetical-protein
MPITVDIDVMLAKRKMSVGELAERVGITPANLAVLKNGRAKAVRFTTLAALCEVLQCQPGDLLRWETDGESVTSRTGADTGASDASAS
>CP032427.1|AYC43884.1|9199570_9200494_+|Mycothiol-acetyltransferase
MSGLSSQLLPVGYHSRPATTSDAPEVHRLVTACELALHGRAATGVDSVAADLGTPAAEAPSESVLLHDSAGGLAGWARVRGRRATVHVHPAHTGRGLGGLLLAWTEDRARRFGGDRLAQTVPDSDQAAVVLLRSGGYTPLVTEWLLEFAMPCEPDVPEPPAGVTVRAFEAGDERSVYQLTEDAFDEWQQRRKSYPEWARHTVELPTFDPAASPLAFAGDQLVGAVLSLDVPGDDEGYVERVAVRKDQRNRGIARVLLRESFRAFHRQGKRGCTLWTHSDTGALSLYERLGMTVRRSSTVYSKELAEG
>CP032427.1|AYC43883.1|9197628_9199152_-|hypothetical-protein
MQSLHPPRPPYPPRPGLIPGATDRELSSRLSDRGPGRQAAIAVLLARHWPSARDYALLCLASATPTAPLAATSAFHQLLDRLEEGGPAGALRPQLLVMVRETIRAWAADDDVCAAMPELHKPTGGRGLHLAQSGTAAHRKLAERAFVALPEIAQCLLWHTEVEAEAIDIPAGLTGVDKTTATASLEQAREQFRTGIVRAHRELAPSSECRFHNRLIDVAVGRGAELPQDVRHHLTQCSYCRAAVEQLSCFDGGLEVLLAEAVLGWGGRRYAASRPGRSGPADWAATGTGTGPVPGRHRSGGDGRQRAMVAVGTGLTSLALLAGILAVRGWSDDGPGHLAEPAWGGATTAAPDHGTPSASSSPSTASAVGSGAETDGRLHNAATGLCLDVEGALDSGAHLRLAQCSSSLSQEWSYEFDGSLRSGADPSLCLTADAAGGKVRLASCDEQDAATVYVLSAGGEILLDEHQGLALAAEPGTAPPRVVVTERDGSQEQRWSFDDEDEPSSRT
>CP032427.1|AYC43882.1|9197055_9197571_+|hypothetical-protein
MSFSLERPPFQADERTALVGWLDLQRQILRWKCEGLSEADAHRSVVPSSPAMTMAGLISHMRWVEHTWLEVLFLGGDKTQNPSFDETAEDAEWHTDGISLKQLLSEYEAQCARSNEIVAEASLDDVGRHPDYQSAKANLRWMLIHLVEETGRHAGHADIVRELLDGAKGYY
>CP032427.1|AYC43881.1|9194432_9196802_-|hypothetical-protein
MLKLWYRRPAEGFAQSLPLGNGSLGAMVPGRPAHERVDLNADTLWSGGPVAPADHDPAQHLSALRRAVLDDHDHVRAEELATRMQGPDTQAYQPLGALLLDLGHGDDVTEYRRELDLADAVCTVAYTADGVRHTRELFVSAVAGVLVIRLGCDTPGALSFTARLESAHPGSAPGPAVSGRAPAHVEFEGTGPDAVRYTPDAGTGFAAALRVVPDEGTVVADPLTGALRLTGATTATVLVAAATGFRGWDVPPDGPESGPEAEVARLLDAAAGIPYDRLRAEHLADHRALHDRTVLSLSHDPALEGLPTDERLAAVRSGADDPGLTALQFAYGRYLLIASSRPGTQPANLQGIWNTQVQPPWQCDWTTNINLQMNYWHAETTGLSACHEPLFDLITDLAAAGRRTARDYYGCGGWTAHHNVDIWRTTHPVQGEPQWANWPLAGAWLSAHLWEHFRFGGDRDFLAERAWPVMREAAVFLLDYLVEDGDGHLVTCPSTSPEHRFQVPTPGGTAFAATTAAVTMDLWLVEELFSNCLAAMKELGLSDPIADALDQARRRLPPLPYSPGQPLAEWRHDAVPEDPGHRHLSHLYGLYPGDRVDAERTPELFAATRAALDLRLAHGGGGTGWSLAWVVTLAARLGDGALAHESLRRLLAESTSDNLFDLHPPELFQIDGNFGATAGVAEMLLQSHTGELRLLPALPDAWPQGTVRGLRARGGVTVDLDWRDGGLVRAGLHLPHPGRYRLLLPTPGPHPDVTDDQYGGIETRWTSPTAGFARGEFTATRAGLHHVRF
>CP032427.1|AYC43880.1|9193296_9194205_-|hypothetical-protein
MQKAKLWPLVIATLLAMVATSGATVAHDTGPAAARTGAATAGCGKAPGLASGTHTLTVNGKSRSFILRVPDTYDQNHAYRLVFGFHWLGGSATDVSTGRTVENGTWAYYGLQRLANNSTIFVAPQGLNNGWANSGGEDVALTDAIISRLDNALCVDTSRRFSVGFSYGAAMSYALACARPTVFRAVAVQSGGQLSGCAGGTQPVAYLGVHGIRDSVLGISGGRTLRDRFVRNNGCAAQNPPEPAQGSRTHRVTAYTGCSAGHPVVWAAFDEGHIAAPQDGAAGDSGSRTWVPGEIWKFFSQF
>CP032427.1|AYC43879.1|9192158_9193241_-|hypothetical-protein
MALRPRSRTVRQALLATGATAALSVGLLTGTAPAAPAAPAAGSLPCDLYAAGGTPCVAAHSTTRALYSSYNGPLYQVRRARDNATRDIGVLSQGGVANAAAQDSFCSGTTCLITVIYDQSGRNNRLTQAPPGGFSGPAAGGYDNLANATAAPITVAGHKAYGVFVAPGTGYRNNSTNGVAKGDQPEGMYAVLDGTHYNGGCCFDYGNAETNSRDNGNGTMEAIYFGNIKVWGYGSGNGPWIMADLENGLFSGYNQRYNAGDPSISHRYLTAVVKGGPNRWAIRGGNAQSGSLSTFYNGVRPNVPGYNPMKKEGAIILGIGGDNSHGAAGTFYEGVMTSGYPSDATENAVQANITAAGYGR
>CP032427.1|AYC43878.1|9191585_9192080_+|hypothetical-protein
MEPRWLTDEEQRAWRAYRDVTHLLEDALDQRLRQTEGVSHLYYSVMGVLSEAPDRRLRMTDLAAQLKIPRTRLSYAVARMEELGWVRREDSPDDGRSQLTVLPDEGMRTLERIAPSHVATVRATVFVRLTPEQTRVFGEVCEIIRAGLTGPDRPPLPADLPWRR
>CP032427.1|AYC43889.1|9203369_9204638_+|Multiple-sugar-binding-protein
MKHSGRRVAIATTVAAMAVSLAACGGGSSGASSDGTVTLHVQAWKGGGAEPANVAEINKAFEKAHPKIKIDFEYITANDTYVQKLQPELLGGKAGDVIMVDTDKMKKWGASGYLADLSKESWAGDIAPDAKPFAQSDGKTLAMPMELIGIGMYANMNLLKKAGIDEVPADWPTFLADLGKLKKAGINPISLPDKSGWTGSSVFQASGSTLVYQKNKQWDADFLGGKASFAPDWQGPLDQLKTLEDKGYVDWKNELGVDEWSQGPQDFSAGKSAFWYQGAWQVSNVAKAGFPVQFAPWPGGAAGTKPNGMLFAGTMWAVNSQSQQGDAAREYVKFWSQSENLAKYLDAEHAESPFTGGSTPESTETTAFTNAFKDGRYRILPSNSWYGAAAETEIGSKIQAYLLGKESTAQTLKDIQTAASAK
>CP032427.1|AYC43890.1|9204741_9205614_+|Lactose-transport-system-permease-protein-LacF
MIHRRRATMAAFLLPAITVYAVFMLYPLGRGIYLSMTDSLGGPIAHFVGTEQYRAMADDPDVTAALWHTILYAAVVVIAQNGLGLLFASMLFRRPKVRKALSVTLLTPTLVSPVMAAFIWSYLFAPDGGINALLGLLGLDSLEHVWLGDTSTALYAVAAVNIWMFAGYSCAIFLAGYMSLPTELLDAAAVDGANGWRRFRSIEWPMLAPALTVNVTLSLIGSLKVFEFPLVLTNGGPAGSTETLTTLVYRNVFGGGKFALGIAISVLLLVTVVVLSSATSSLLRLRERRI
>CP032427.1|AYC43891.1|9205629_9206544_+|L-arabinose-transport-system-permease-protein-AraQ
MTSHTLSPETDTRPTTPRPSSGPAAAPTRSTLRRATKSLGTILLCLGVLVFVLPFVFTVLTSLRTAADVARSPLGIPHTFTLKNFSAAFSQIHYGRSALNTLLITGLSCLSITVLGSLASYPLARITQGWSTWVYRLFIVGTSVPVFVVVAPLYLLMRDLNLLDNYAGVVFVYTAMFLPVAVFFYTSFIRSIPTDLEEAAALDGCGALRTFFTIILPLLRPITSTLLTFVSLQVWNDLIVPLVFLQDPDKRTVMVNAYSFIDPHTVQPTTLFPAALLGVLPLFLIFVFLQRHVVAGMSAGAVKS
>CP032427.1|AYC43892.1|9206822_9207701_+|hypothetical-protein
MYVVSYFTDADEALHLAYSHDGEEFAPVNGGLPVLRGTVGTGRLRDPFIGVGPDGLFHLLATDGWTSPYIVHATSADLVSWSEQRLVPVMARVQGALNAWAPEFFLDRATGLYHLIWSSVVEPGATAEGRDFEHLTQDHRIWHCTTEDFRTFSAPGIFFDPGHSVIDATVRELSGGGFLMAFKDERGVNDIATAHKDIHLTTFDVPGGPYATPNGPVTPSLAEGPSLFRRDGDWIMIFDHFLEGRYGAVRSRDGGAWEPVLLGLPEGMRHASVLETSASVLEVSALDALAAR
>CP032427.1|AYC43893.1|9207830_9210311_+|Keratan-sulfate-endo-1,4-beta-galactosidase
MKRRRTARPARRASRVLALFAMLAGALLVPAHAALAAGTTYYVNCSASTNGSGTQASPWNSVAGVNSTTFGAGDSILFAAGTTCTGQLTPGGSGASGSPITMGSYGSGAKPVINANGATGPVIRLLNQQYWEIGGLELVNSASSPAYRSGVLAENSSGGVLHHIRVHDMYIHNISGWPGGWYATNAGVGVQTDHTTPVSTWDDVVVENNTFDHVDRIAVAVTPDGDGQGTGLTTGTVIRGNTMTYDGADDILVVKNDGALIDGNKAGYGGAKNTCPPSGQYCNGASAGIWMSGSSNTVVQNNEVYCHVNGADGTGYDVDWGNHNTTFQYNYSHQNLGGFMLVMPPFSIANEPTSTVPSDGTVIRYNISENDGSNAGCPTSGTPTHGTGVFHFVGGVPNQSGSSAAVPLIYNNSIYVNKSGLNTPILYSRAGSSISGALSFKNNAVFNYGTGGYFSTTGSSVYSNNLFYGNHPSSEPADSAKVTADPQFRNPGNTNGSPSYTGTNAYQVHPSSPVIRAGAVIGSNGGKDAFGNTVSATAAPNIGAYNGTGGNLLSNAGFESGALSPWTQASGASSSVTSSGARTGTYALTTAASGSGANEALTGLSPNTTYLLTGWGKVANAGETLAIGVKDFGGTETYTNVATTSYTQAAVLFTTGSSSTSATVYCWKNSGGSGAGYCDDLAVEPLTSATNAITNPGFETGALTPWGQSTSTASSVAATNARTGTYALQTAASASGAIQTVSGLTASNTYLLAAWAKVATAGEEVAVGVKSFGGTETYLRTSTTSYAQQPIFFTTGATTTSAGVYCYKNTGSAAGYCDDYTLIKLP
>CP032427.1|AYC43894.1|9210411_9210567_-|hypothetical-protein
MIALGVILLIVGFLTGVSILWTIGIILLVIGAVLWIMGSAGHAVAGRRHYW
>CP032427.1|AYC43895.1|9210622_9211504_+|hypothetical-protein
MEAHTFLFIRAGVIMADREESAHEIVCTKNTDEVLTGGMANAGAVVRRGGLVERPAPSTAPALHAHLRALERHGFGGAPTPLRLTEDGREQLTYIPGDVALPPFPGWAMTEDALRSVGGLLRRLHDTSATVAVDQGVQWPRSMADPEGGTLLCHNDVCPENVVFRDGRAVALIDFDLAAPGRAVWDLAMAARYWVPMLDPVSAAVLHPAGLDIPARLRILADGYGLSADERAELPGVVEQATESCRAFVAGKVAEGDPVFVEALSARGGWHRWDRLQEWLTAHRELFTAALLK
>CP032427.1|AYC43896.1|9211708_9213772_+|Development-specific-protein-S
MSSAPLSRRSLIKAAALAGGVVAFGLPQVLLPATAEAYTVPSKMDWWYQARFGMFIHFGSYSYLGHGEWAFATEGWSKPNYQTQVSAHFNPTAFNAANIAQLAADAGMKYLVITAKHHEGFAMWDSNVPSFTDTTGTKLYNMHDYAGVQGDLLASLKKECEARGVKFGLYYSILDWNHPSQTIRSGGVTTMTSMAARTAYIADMKAQLQELLDRYDPALLWFDGDWFGEPASPTLQDWWLKSDGIDLYNWLIARKPTLVVNERVKRDLGLGDYTVTEFGVPSAPLDRQWERCDTMNGAWGYNAGRENSYQPVKTFVQELVTCVSRDGNFLLNIGPKGDGSVTAGSVTILQGLASWMATYGDSVHGALASPYSSDPGWGRATKKNGKLFAHVFTWPTNGVLQIPALTNTVSRVYLMNNPSASLSYTVSGGQINVTVPTTAPDASDSVVCVEVSGLPTAAAGSGVTVFQDVNYAAGSAALTLGSYTSSQLSAAGVGPSSISSLRVPQGYQVIGYSGDNFTGTAWTFTSDNPDLRVTGNNDAIVSLKVTFNPSSYFRLINVTDGLALDSGGNVASGSNLKQWTPVDSTNLQWQAVDLGTGYYRLVNRTNGMVADGWGTTNAGDPARQAAWNGSPNQQWQITDRGKGQFSIANRATGLVLDGGGQVPSGSVTKQWTWVTSTNLLWTFQPVS
>CP032427.1|AYC43897.1|9213900_9215595_-|putative-glycosyltransferase-EpsJ
MFSWGENLIKVSVVVPIYNAGPYVERCAPSLVNQSLGADAYEVVYVDDGSTDDSAERLRRLAEAHPHVRVFEQENSGWPGKPRNVGVDRARGKYIQFVDQDDELSYEALERLYALAERNGSDIVLGKVHGTMAGPSNVFKRTVDRCTAADAPLIESLTPHKMFRRDFLREHAIRFPEGRVRLEDQLFMARTYVRAKTVSILGDYPCYQWNRREDGGNNSSRRITPDDYYGHLDKVVEAIKEGTEPGELQNRLLRRSFRVELLRPVSEPRVLQRTGKDLEEYYTTVRRMAMTSYPPGVREGLPAISSLRAELLVQDRLDSLIELARRTQRIKARVEVDDMRWRNGKLVLRTRIGMVKADGEPLTVVDRGGRMLLDPELLDGIPGAEDWEVRDPFSHAYGELIVHDTAGNHWWYPDGELAPALEPLGGGRQRVVVAGETIIDPLTLAGGDPLEGGSHQVWAGGQLLGVGRRPRLAVAPGPARVSLGAIALGTPPRLVSPGWGGPGGQLRLTVGGPGRIGPARRVVLRTAADHRLRHGVREVLRRLPDSMRANVRAAARRAERRMLQ
>CP032427.1|AYC43898.1|9215725_9216310_+|hypothetical-protein
MTDTETPDDETPDGLLGWCLVANVARETLYGEGRLEVQHGTKHFSAGTLLWLPRVRWDPGHCRWPAVGRHRGNSRRYVRMIVRAEDLENFRVKGVYSEALVRNLNGYDHDPAAPRTLQNPWTREQAQSWADSWKVRREPVFIEGHPYAHLRISVPNPPPQEIQLDGETLHLAHYGTKGARYSRTAPPVERIPER

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP032427_5	5.1\|2731477\|18\|CP032427\|CRT	2731477-2731494	18	CP032427.1	6068863-6068880	1	0.944
CP032427_15	15.1\|6935155\|19\|CP032427\|CRISPRCasFinder	6935155-6935173	19	CP032427.1	196308-196326	2	0.895

1. spacer 5.1|2731477|18|CP032427|CRT matches to position: 6068863-6068880, mismatch: 1, identity: 0.944

cgccgaacccgcaggccg	CRISPR spacer
cgccgtacccgcaggccg	Protospacer
***** ************

2. spacer 15.1|6935155|19|CP032427|CRISPRCasFinder matches to position: 196308-196326, mismatch: 2, identity: 0.895

cgggcacccagggccccgc	CRISPR spacer
cggtcaccctgggccccgc	Protospacer
*** ***** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP032427_15	15.2\|6935197\|25\|CP032427\|CRISPRCasFinder	6935197-6935221	25	MH588547	Caulobacter phage CcrSC, complete genome	58159-58183	3	0.88
CP032427_19	19.1\|8800739\|24\|CP032427\|CRISPRCasFinder	8800739-8800762	24	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	536089-536112	3	0.875
CP032427_15	15.2\|6935197\|25\|CP032427\|CRISPRCasFinder	6935197-6935221	25	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	75810-75834	4	0.84
CP032427_15	15.2\|6935197\|25\|CP032427\|CRISPRCasFinder	6935197-6935221	25	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	445218-445242	4	0.84
CP032427_15	15.2\|6935197\|25\|CP032427\|CRISPRCasFinder	6935197-6935221	25	MT310890	Microbacterium phage Phedro, complete genome	10470-10494	4	0.84
CP032427_15	15.2\|6935197\|25\|CP032427\|CRISPRCasFinder	6935197-6935221	25	MT310889	Microbacterium phage Phractured, complete genome	10470-10494	4	0.84
CP032427_15	15.2\|6935197\|25\|CP032427\|CRISPRCasFinder	6935197-6935221	25	MT310891	Microbacterium phage Pharky, complete genome	10470-10494	4	0.84
CP032427_5	5.2\|2731513\|27\|CP032427\|CRT	2731513-2731539	27	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1298687-1298713	5	0.815
CP032427_5	5.2\|2731513\|27\|CP032427\|CRT	2731513-2731539	27	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	514852-514878	5	0.815
CP032427_15	15.2\|6935197\|25\|CP032427\|CRISPRCasFinder	6935197-6935221	25	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1392251-1392275	5	0.8
CP032427_15	15.2\|6935197\|25\|CP032427\|CRISPRCasFinder	6935197-6935221	25	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	740140-740164	5	0.8
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	MT740738	Ralstonia phage Gamede, complete genome	48951-48977	5	0.815
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	MT740739	Ralstonia phage Gerry, complete genome	41465-41491	5	0.815
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	89146-89172	5	0.815
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	MT361768	Ralstonia phage RPZH6, complete genome	33081-33107	5	0.815
CP032427_5	5.2\|2731513\|27\|CP032427\|CRT	2731513-2731539	27	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1929737-1929763	6	0.778
CP032427_5	5.7\|2731720\|27\|CP032427\|CRT	2731720-2731746	27	NZ_CP031163	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence	488200-488226	6	0.778
CP032427_5	5.7\|2731720\|27\|CP032427\|CRT	2731720-2731746	27	AP021851	Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome	208399-208425	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	NZ_CP052760	Pseudomonas aeruginosa strain LYT4 plasmid unnamed1, complete sequence	45264-45290	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	NZ_CP053715	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed8, complete sequence	21990-22016	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	KY555147	Caulobacter phage Ccr34, complete genome	147596-147622	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	KY555145	Caulobacter phage Ccr29, complete genome	156215-156241	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	KY555143	Caulobacter phage Ccr2, complete genome	150549-150575	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	NC_019410	Caulobacter phage CcrKarma, complete genome	151263-151289	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	KY555146	Caulobacter phage Ccr32, complete genome	147156-147182	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	NC_019407	Caulobacter phage CcrMagneto, complete genome	149458-149484	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	KY555142	Caulobacter phage Ccr10, complete genome	150074-150100	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	NC_019411	Caulobacter phage CcrSwift, complete genome	150036-150062	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1479211-1479237	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	JX163858	Caulobacter phage phiCbK, complete genome	60678-60704	6	0.778
CP032427_17	17.1\|8537350\|27\|CP032427\|CRISPRCasFinder	8537350-8537376	27	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	246379-246405	7	0.741

1. spacer 15.2|6935197|25|CP032427|CRISPRCasFinder matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 3, identity: 0.88

ccgacgtccaggacagcggcgtcat	CRISPR spacer
ccgacgaccaggacagcggcggcgt	Protospacer
****** ************** *.*

2. spacer 19.1|8800739|24|CP032427|CRISPRCasFinder matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 3, identity: 0.875

tggttcgaccgggccgggcgaggt	CRISPR spacer
tggttcgagcgggtcgggcgagga	Protospacer
******** ****.*********

3. spacer 15.2|6935197|25|CP032427|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 4, identity: 0.84

ccgacgtccaggacagcggcgtcat	CRISPR spacer
ccgacatccaggacagcggcgacgg	Protospacer
*****.*************** *.

4. spacer 15.2|6935197|25|CP032427|CRISPRCasFinder matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 4, identity: 0.84

ccgacgtccaggacagcggcgtcat	CRISPR spacer
ccgacatccaggacagcggcgacgg	Protospacer
*****.*************** *.

5. spacer 15.2|6935197|25|CP032427|CRISPRCasFinder matches to MT310890 (Microbacterium phage Phedro, complete genome) position: , mismatch: 4, identity: 0.84

ccgacgtccaggacagcggcgtcat	CRISPR spacer
ccgtcctccaggacagcggcgtcgc	Protospacer
*** * *****************..

6. spacer 15.2|6935197|25|CP032427|CRISPRCasFinder matches to MT310889 (Microbacterium phage Phractured, complete genome) position: , mismatch: 4, identity: 0.84

ccgacgtccaggacagcggcgtcat	CRISPR spacer
ccgtcctccaggacagcggcgtcgc	Protospacer
*** * *****************..

7. spacer 15.2|6935197|25|CP032427|CRISPRCasFinder matches to MT310891 (Microbacterium phage Pharky, complete genome) position: , mismatch: 4, identity: 0.84

ccgacgtccaggacagcggcgtcat	CRISPR spacer
ccgtcctccaggacagcggcgtcgc	Protospacer
*** * *****************..

8. spacer 5.2|2731513|27|CP032427|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 5, identity: 0.815

cgcccgcgccgcccaacccccagagtg	CRISPR spacer
ggcccgcgccggccgacccccagaagg	Protospacer
 ********** **.*********. *

9. spacer 5.2|2731513|27|CP032427|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 5, identity: 0.815

cgcccgcgccgcccaacccccagagtg	CRISPR spacer
ggcccgcgccggccgacccccagaagg	Protospacer
 ********** **.*********. *

10. spacer 15.2|6935197|25|CP032427|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 5, identity: 0.8

ccgacgtccaggacagcggcgtcat	CRISPR spacer
tggacggccaggacagcggcgtccg	Protospacer
. **** ****************

11. spacer 15.2|6935197|25|CP032427|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.8

ccgacgtccaggacagcggcgtcat	CRISPR spacer
tggacggccaggacagcggcgtccg	Protospacer
. **** ****************

12. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to MT740738 (Ralstonia phage Gamede, complete genome) position: , mismatch: 5, identity: 0.815

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tctccagcctgccgccggccgagcgcg	Protospacer
 * ** ******* ************

13. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to MT740739 (Ralstonia phage Gerry, complete genome) position: , mismatch: 5, identity: 0.815

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tctccagcctgccgccggccgagcgcg	Protospacer
 * ** ******* ************

14. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 5, identity: 0.815

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
gggccggcctggctccggccgagcggg	Protospacer
* *** ***** *************

15. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to MT361768 (Ralstonia phage RPZH6, complete genome) position: , mismatch: 5, identity: 0.815

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tctccagcctgccgccggccgagcgcg	Protospacer
 * ** ******* ************

16. spacer 5.2|2731513|27|CP032427|CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.778

cgcccgcgccgcccaacccccagagtg	CRISPR spacer
ggcccgcgccgcccaacccacaccgat	Protospacer
 ****************** **  *

17. spacer 5.7|2731720|27|CP032427|CRT matches to NZ_CP031163 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence) position: , mismatch: 6, identity: 0.778

ccccagcgccgcccaacccacagagtg	CRISPR spacer
acccagcgccgcccaagccacatcgga	Protospacer
 *************** *****  * .

18. spacer 5.7|2731720|27|CP032427|CRT matches to AP021851 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome) position: , mismatch: 6, identity: 0.778

ccccagcgccgcccaacccacagagtg	CRISPR spacer
acccagcgccgcccaagccacatcgga	Protospacer
 *************** *****  * .

19. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to NZ_CP052760 (Pseudomonas aeruginosa strain LYT4 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
gcgcctgcctgccactggccgagatga	Protospacer
************* *.*******

20. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to NZ_CP053715 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed8, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
cagccttcctgcgtccggccgagcgta	Protospacer
  **** ***** ************.

21. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to KY555147 (Caulobacter phage Ccr34, complete genome) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tcatgcgcctgccgccggccgagcgcc	Protospacer
 *.. .******* *************

22. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to KY555145 (Caulobacter phage Ccr29, complete genome) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tcatgcgcctgccgccggccgagcgcc	Protospacer
 *.. .******* *************

23. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to KY555143 (Caulobacter phage Ccr2, complete genome) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tcatgcgcctgccgccggccgagcgcc	Protospacer
 *.. .******* *************

24. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to NC_019410 (Caulobacter phage CcrKarma, complete genome) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tcatgcgcctgccgccggccgagcgcc	Protospacer
 *.. .******* *************

25. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to KY555146 (Caulobacter phage Ccr32, complete genome) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tcatgcgcctgccgccggccgagcgcc	Protospacer
 *.. .******* *************

26. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to NC_019407 (Caulobacter phage CcrMagneto, complete genome) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tcatgcgcctgccgccggccgagcgcc	Protospacer
 *.. .******* *************

27. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to KY555142 (Caulobacter phage Ccr10, complete genome) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tcatgcgcctgccgccggccgagcgcc	Protospacer
 *.. .******* *************

28. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to NC_019411 (Caulobacter phage CcrSwift, complete genome) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tcatgcgcctgccgccggccgagcgcc	Protospacer
 *.. .******* *************

29. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
cgacctgcctgtatccggccgagcgca	Protospacer
  .********. *************

30. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to JX163858 (Caulobacter phage phiCbK, complete genome) position: , mismatch: 6, identity: 0.778

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
tcatgcgcctgccgccggccgagcgcc	Protospacer
 *.. .******* *************

31. spacer 17.1|8537350|27|CP032427|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 7, identity: 0.741

gcgcctgcctgcctccggccgagcgcc	CRISPR spacer
agtggagcctgcctcccgccgagcgcc	Protospacer
.     ********** **********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2321171 : 2384378

Bacillus_phage(60.0%)

holin,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC37799.1\|2321171_2322956_-\|protease	Extracellular basic protease	A0A1B0T6A2	Bacillus_phage	6.0e-30	33.6
AYC37800.1\|2323436_2324399_+	Chitin-binding protein CbpD	NA	NA	NA	NA
AYC37801.1\|2324417_2325077_-	hypothetical protein	NA	NA	NA	NA
AYC37802.1\|2325747_2326410_+	hypothetical protein	NA	NA	NA	NA
AYC37803.1\|2326409_2326967_+	hypothetical protein	NA	NA	NA	NA
AYC37804.1\|2327455_2328187_-	hypothetical protein	NA	NA	NA	NA
AYC37805.1\|2328432_2329443_+	hypothetical protein	NA	NA	NA	NA
AYC37806.1\|2329488_2332236_+	hypothetical protein	NA	NA	NA	NA
AYC37807.1\|2332246_2332669_+\|protease	Serine protease inhibitor	NA	NA	NA	NA
AYC37808.1\|2332670_2333030_+	hypothetical protein	NA	NA	NA	NA
AYC37809.1\|2333016_2333613_+	hypothetical protein	NA	NA	NA	NA
AYC37810.1\|2333711_2334677_-	Glycine betaine-binding protein YehZ	NA	NA	NA	NA
AYC37811.1\|2335062_2337816_+	hypothetical protein	NA	NA	NA	NA
AYC37812.1\|2337812_2338304_+\|protease	Serine protease inhibitor	NA	NA	NA	NA
AYC37813.1\|2338323_2338740_+	hypothetical protein	NA	NA	NA	NA
AYC37814.1\|2338726_2339329_+	hypothetical protein	NA	NA	NA	NA
AYC37815.1\|2339364_2340033_-\|holin	Choline transport system permease protein OpuBB	NA	NA	NA	NA
AYC37816.1\|2340029_2340719_-\|holin	Choline transport system permease protein OpuBD	NA	NA	NA	NA
AYC37817.1\|2340715_2341885_-	Osmoprotectant import ATP-binding protein OsmV	Q6GZ03	Mycoplasma_phage	7.4e-13	41.1
AYC37818.1\|2341954_2342692_-	FAD:protein FMN transferase	NA	NA	NA	NA
AYC37819.1\|2342702_2343404_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
AYC37820.1\|2343414_2344755_-	3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component	NA	NA	NA	NA
AYC37821.1\|2344843_2345602_+	putative transcriptional regulatory protein TcrX	W8CYM9	Bacillus_phage	5.5e-33	35.7
AYC37822.1\|2345598_2347041_+	putative sensor histidine kinase TcrY	W8CYF6	Bacillus_phage	5.4e-21	30.7
AYC37823.1\|2347106_2348252_-	Peptidoglycan endopeptidase RipA	NA	NA	NA	NA
AYC37824.1\|2348409_2348892_-	RNA polymerase sigma-E factor	NA	NA	NA	NA
AYC37825.1\|2349856_2353183_-	Regulatory protein AfsR	NA	NA	NA	NA
AYC37826.1\|2353553_2354543_+	hypothetical protein	NA	NA	NA	NA
AYC37827.1\|2354676_2355144_+	hypothetical protein	NA	NA	NA	NA
AYC37828.1\|2355370_2356411_+	hypothetical protein	NA	NA	NA	NA
AYC37829.1\|2356458_2359530_+	O-GlcNAcase	NA	NA	NA	NA
AYC37830.1\|2359621_2360386_-	hypothetical protein	NA	NA	NA	NA
AYC37831.1\|2360505_2361390_+	putative HTH-type transcriptional regulator YbbH	NA	NA	NA	NA
AYC37832.1\|2361500_2365712_+	Mannosylglycerate hydrolase	NA	NA	NA	NA
AYC37833.1\|2365708_2366371_+	hypothetical protein	NA	NA	NA	NA
AYC37834.1\|2366489_2367866_+	hypothetical protein	NA	NA	NA	NA
AYC37835.1\|2367868_2368882_+	Lactose transport system permease protein LacF	NA	NA	NA	NA
AYC37836.1\|2368878_2369772_+	L-arabinose transport system permease protein AraQ	NA	NA	NA	NA
AYC37837.1\|2369735_2371979_-	Beta-glucosidase BoGH3B	NA	NA	NA	NA
AYC37838.1\|2371975_2373052_-	N-acetylmuramic acid/N-acetylglucosamine kinase	NA	NA	NA	NA
AYC37839.1\|2373365_2374382_+	hypothetical protein	NA	NA	NA	NA
AYC37840.1\|2374464_2375937_-	Beta-hexosaminidase	NA	NA	NA	NA
AYC37841.1\|2376028_2376436_-	Peptide methionine sulfoxide reductase MsrB	NA	NA	NA	NA
AYC37842.1\|2376449_2377841_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
AYC37843.1\|2377900_2378374_-	hypothetical protein	NA	NA	NA	NA
AYC37844.1\|2378536_2379403_-	2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase	NA	NA	NA	NA
AYC37845.1\|2379476_2380553_+	Cell division protein ZapE	NA	NA	NA	NA
AYC37846.1\|2380797_2381193_+	hypothetical protein	NA	NA	NA	NA
AYC37847.1\|2381393_2381972_+	Carbonic anhydrase 1	NA	NA	NA	NA
AYC37848.1\|2381968_2383465_+	C4-dicarboxylic acid transporter DauA	NA	NA	NA	NA
AYC37849.1\|2383601_2384378_+\|protease	Modulator of FtsH protease HflK	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	6.4e-21	27.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032427

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection