CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP032381	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence	0 crisprs	cas14j	0	0
CP032380	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU1-USMARC-69807, complete sequence	0 crisprs	DEDDh	0	1
CP032379	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas3,DEDDh,DinG	1	11

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

37158 : 65303

Escherichia_phage(30.0%)

transposase,head,integrase,tail

attL 43241:43255|attR 66005:66019

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB95552.1\|37158_37863_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYB95553.1\|38413_39118_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYB95554.1\|39151_39643_-	hypothetical protein	NA	NA	NA	NA
AYB95555.1\|39749_40487_+	resolvase	NA	NA	NA	NA
AYB95556.1\|40483_40708_+	hypothetical protein	NA	NA	NA	NA
AYB95557.1\|40918_42412_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AYB95558.1\|42442_43327_+	DUF3363 domain-containing protein	NA	NA	NA	NA
43241:43255	attL	NA	NA	NA	NA
AYB95559.1\|43543_44758_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	5.5e-19	28.7
AYB95560.1\|44785_45091_+	LysR family transcriptional regulator	NA	NA	NA	NA
AYB95561.1\|45357_46557_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AYB95562.1\|46635_47313_+	TetR family transcriptional regulator	NA	NA	NA	NA
AYB95563.1\|47344_47587_-	relaxase	NA	NA	NA	NA
AYB95564.1\|47892_48729_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AYB95565.1\|48728_49532_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AYB95566.1\|49592_50408_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
AYB95567.1\|50714_51026_+	hypothetical protein	NA	NA	NA	NA
AYB95568.1\|51199_51985_+	ParA family protein	A0A1X9IGI7	Lactococcus_phage	6.1e-11	26.4
AYB95569.1\|51988_53170_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	2.4e-11	28.7
AYB95570.1\|53218_53491_+	hypothetical protein	NA	NA	NA	NA
AYB95571.1\|53543_54179_-	restriction endonuclease subunit M	NA	NA	NA	NA
AYB95572.1\|54740_55118_+	hypothetical protein	A0A2H4P7P5	Pseudomonas_phage	1.7e-22	49.6
AYB95573.1\|55110_55392_+	hypothetical protein	NA	NA	NA	NA
AYB95574.1\|55366_56041_+	thymidylate kinase	NA	NA	NA	NA
AYB95626.1\|56108_56540_+	hypothetical protein	NA	NA	NA	NA
AYB95575.1\|56524_56857_+	hypothetical protein	NA	NA	NA	NA
AYB95576.1\|56865_57366_+	hypothetical protein	I3UMJ0	Colwellia_phage	9.5e-18	38.4
AYB95577.1\|57369_58797_+	DNA cytosine methyltransferase	NA	NA	NA	NA
AYB95578.1\|58796_59453_+	hypothetical protein	NA	NA	NA	NA
AYB95579.1\|59508_60126_+\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AYB95580.1\|60126_60333_+	hypothetical protein	NA	NA	NA	NA
AYB95581.1\|60337_60637_+	ASCH domain-containing protein	A0A0K1LLW2	Caulobacter_phage	3.6e-20	55.4
AYB95582.1\|60727_61216_-	hypothetical protein	NA	NA	NA	NA
AYB95583.1\|63247_63952_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYB95584.1\|63998_65303_-\|integrase	integrase	NA	NA	NA	NA
66005:66019	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032379

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CRISPR-Cas detection and classification

Crispr_ID: CP032379_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032379_1

974769-975039

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRT

4 spacers

cas8e

The CRISPR arrays of CP032379_1

>merge|CP032379|1|974769-975039|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACTGCCGTGCCTGTCCAGGACAAATTGCCGATTATTGTGTTCCCCGCGCCAGCGGGGATAAACTGCTGCCGGTCTGTGCTGTTGTCGTCAATAATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTTACTGATGCAGACTGCGGATCTTAATCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCGCCAACGACTGGAATTTTTGCGTGTAGCCGTGTTCCCCGCGCCAACAAGGATAGCC

>CP032379|1|1|974769-974980|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP032379|1|1|974769-975039|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCTGCCGGTCTGTGCTGTTGTCGTCAATAATCA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGAGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCC

>CP032379|1|1|974769-975039|CRT
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCTGCCGGTCTGTGCTGTTGTCGTCAATAATCA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGAGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP032379.1\|AYB91758.1\|970646_972284_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP032379.1\|AYB91755.1\|965645_968345_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
CP032379.1\|AYB91764.1\|978609_980322_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP032379.1\|AYB95342.1\|982314_982521_-\|hypothetical-protein	unknown	unknown	unknown
CP032379.1\|AYB91757.1\|969618_970419_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP032379.1\|AYB91763.1\|976810_978610_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP032379.1\|AYB91760.1\|973800_974472_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP032379.1\|AYB95341.1\|981245_982199_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP032379.1\|AYB91762.1\|976024_976387_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP032379.1\|AYB91752.1\|963848_964319_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP032379.1\|AYB91756.1\|968424_969012_-\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP032379.1\|AYB95339.1\|976315_976486_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP032379.1\|AYB91759.1\|972366_973665_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP032379.1\|AYB91751.1\|963315_963852_-\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP032379.1\|AYB91766.1\|985317_986874_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP032379.1\|AYB91753.1\|964333_964840_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP032379.1\|AYB91765.1\|980423_981158_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP032379.1\|AYB95340.1\|980278_980497_-\|hypothetical-protein	unknown	unknown	unknown
CP032379.1\|AYB91761.1\|975139_975937_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP032379.1\|AYB91754.1\|964859_965633_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177

Protein	Function_ID	Function_description	E-value
CP032379.1\|AYB91758.1\|970646_972284_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP032379.1\|AYB91755.1\|965645_968345_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP032379.1\|AYB91764.1\|978609_980322_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP032379.1\|AYB91757.1\|969618_970419_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
CP032379.1\|AYB91763.1\|976810_978610_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP032379.1\|AYB91760.1\|973800_974472_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP032379.1\|AYB95341.1\|981245_982199_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP032379.1\|AYB91762.1\|976024_976387_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP032379.1\|AYB91752.1\|963848_964319_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.10162e-98
CP032379.1\|AYB91756.1\|968424_969012_-\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP032379.1\|AYB91759.1\|972366_973665_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP032379.1\|AYB91751.1\|963315_963852_-\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	7.785e-121
CP032379.1\|AYB91753.1\|964333_964840_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
CP032379.1\|AYB91765.1\|980423_981158_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
CP032379.1\|AYB91766.1\|985317_986874_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP032379.1\|AYB91761.1\|975139_975937_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00381e-102
CP032379.1\|AYB91754.1\|964859_965633_-\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0

>CP032379.1|AYB91760.1|973800_974472_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP032379.1|AYB91759.1|972366_973665_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKNITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP032379.1|AYB91758.1|970646_972284_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP032379.1|AYB91757.1|969618_970419_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP032379.1|AYB91756.1|968424_969012_-|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP032379.1|AYB91755.1|965645_968345_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSYQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLSLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP032379.1|AYB91754.1|964859_965633_-|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP032379.1|AYB91753.1|964333_964840_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP032379.1|AYB91752.1|963848_964319_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGEMLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP032379.1|AYB91751.1|963315_963852_-|fimbrial-protein-SteF
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>CP032379.1|AYB91761.1|975139_975937_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP032379.1|AYB91762.1|976024_976387_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP032379.1|AYB95339.1|976315_976486_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP032379.1|AYB91763.1|976810_978610_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGVVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP032379.1|AYB91764.1|978609_980322_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP032379.1|AYB95340.1|980278_980497_-|hypothetical-protein
MVSANASTRSTFGSSFRAFRSSLDISSSRYTLPDGASLIRPTRAVGRIRHLCRHPAIQVIPRNHARDRAPGE
>CP032379.1|AYB91765.1|980423_981158_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP032379.1|AYB95341.1|981245_982199_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP032379.1|AYB95342.1|982314_982521_-|hypothetical-protein
MFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP032379.1|AYB91766.1|985317_986874_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE

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Crispr_ID: CP032379_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032379_2

991199-991347

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRISPRCasFinder

2 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of CP032379_2

>merge|CP032379|2|991199-991347|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTATCCCGAAATCACGTTCAAGAAAAATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTGGGTTGCATAGATGACACGCTTATAAATAGTGTTCCCCGCGTCAGCGGGGATAAAC

>CP032379|2|2|991199-991347|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGCGTATCCCGAAATCACGTTCAAGAAAAATCC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP032379.1\|AYB91782.1\|998720_999482_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP032379.1\|AYB95341.1\|981245_982199_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP032379.1\|AYB91769.1\|988513_989260_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP032379.1\|AYB95342.1\|982314_982521_-\|hypothetical-protein	unknown	unknown	unknown
CP032379.1\|AYB91768.1\|987444_988503_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP032379.1\|AYB91781.1\|997690_998740_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP032379.1\|AYB91776.1\|995004_995610_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP032379.1\|AYB91778.1\|996174_996486_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP032379.1\|AYB91779.1\|996504_997215_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP032379.1\|AYB91777.1\|995627_995984_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP032379.1\|AYB91767.1\|986870_987431_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP032379.1\|AYB91775.1\|993578_995018_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP032379.1\|AYB91771.1\|989888_990809_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP032379.1\|AYB91772.1\|990808_991102_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP032379.1\|AYB91773.1\|991363_992410_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP032379.1\|AYB91774.1\|992660_993569_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP032379.1\|AYB91780.1\|997214_997694_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP032379.1\|AYB91765.1\|980423_981158_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP032379.1\|AYB91766.1\|985317_986874_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP032379.1\|AYB91770.1\|989241_989892_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869

Protein	Function_ID	Function_description	E-value
CP032379.1\|AYB91782.1\|998720_999482_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP032379.1\|AYB95341.1\|981245_982199_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP032379.1\|AYB91769.1\|988513_989260_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.80035e-48
CP032379.1\|AYB91768.1\|987444_988503_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.52672e-140
CP032379.1\|AYB91781.1\|997690_998740_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP032379.1\|AYB91776.1\|995004_995610_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP032379.1\|AYB91778.1\|996174_996486_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP032379.1\|AYB91779.1\|996504_997215_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
CP032379.1\|AYB91777.1\|995627_995984_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP032379.1\|AYB91767.1\|986870_987431_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	9.5399e-34
CP032379.1\|AYB91775.1\|993578_995018_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP032379.1\|AYB91771.1\|989888_990809_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.64033e-157
CP032379.1\|AYB91772.1\|990808_991102_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP032379.1\|AYB91773.1\|991363_992410_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP032379.1\|AYB91774.1\|992660_993569_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP032379.1\|AYB91780.1\|997214_997694_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
CP032379.1\|AYB91765.1\|980423_981158_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
CP032379.1\|AYB91766.1\|985317_986874_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP032379.1\|AYB91770.1\|989241_989892_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	4.46702e-75

>CP032379.1|AYB91772.1|990808_991102_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP032379.1|AYB91771.1|989888_990809_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP032379.1|AYB91770.1|989241_989892_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRREKSRQMIQFSSVDYTGVLVLNDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>CP032379.1|AYB91769.1|988513_989260_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP032379.1|AYB91768.1|987444_988503_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVEKIANCFGKVKAEKKPKDELTNAETEQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALRENMNAVYAQETAFKDFNVMNQQGSMKDVLDFICA
>CP032379.1|AYB91767.1|986870_987431_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP032379.1|AYB91766.1|985317_986874_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP032379.1|AYB95342.1|982314_982521_-|hypothetical-protein
MFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP032379.1|AYB95341.1|981245_982199_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP032379.1|AYB91765.1|980423_981158_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP032379.1|AYB91773.1|991363_992410_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP032379.1|AYB91774.1|992660_993569_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP032379.1|AYB91775.1|993578_995018_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP032379.1|AYB91776.1|995004_995610_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP032379.1|AYB91777.1|995627_995984_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP032379.1|AYB91778.1|996174_996486_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP032379.1|AYB91779.1|996504_997215_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP032379.1|AYB91780.1|997214_997694_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP032379.1|AYB91781.1|997690_998740_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP032379.1|AYB91782.1|998720_999482_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP032379_1	1.2\|974859\|32\|CP032379\|PILER-CR	974859-974890	32	MG592432	Vibrio phage 1.050.O._10N.286.48.A6, partial genome	21687-21718	8	0.75
CP032379_1	1.2\|974859\|32\|CP032379\|PILER-CR	974859-974890	32	MG592431	Vibrio phage 1.049.O._10N.286.54.B5, partial genome	21426-21457	8	0.75
CP032379_1	1.2\|974859\|32\|CP032379\|PILER-CR	974859-974890	32	NC_047790	Pseudoalteromonas phage C5a, complete genome	34441-34472	9	0.719

1. spacer 1.2|974859|32|CP032379|PILER-CR matches to MG592432 (Vibrio phage 1.050.O._10N.286.48.A6, partial genome) position: , mismatch: 8, identity: 0.75

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
aatctgctctgtgctgttgtagtcaattataa	Protospacer
   *.* ************* ****** ** *

2. spacer 1.2|974859|32|CP032379|PILER-CR matches to MG592431 (Vibrio phage 1.049.O._10N.286.54.B5, partial genome) position: , mismatch: 8, identity: 0.75

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
aatctgctctgtgctgttgtagtcaattataa	Protospacer
   *.* ************* ****** ** *

3. spacer 1.2|974859|32|CP032379|PILER-CR matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 9, identity: 0.719

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
tttggtgtctgtgccgttttcgtcaataagct	Protospacer
.*    ********.*** ********** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1152487 : 1218260

Salmonella_phage(87.8%)

lysis,portal,integrase,tail,head,plate,transposase,capsid,tRNA

attL 1155524:1155539|attR 1168791:1168806

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB91936.1\|1152487_1153598_+\|transposase	IS3-like element IS1351 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.6e-07	25.6
AYB91937.1\|1154394_1155198_-	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	1.2e-62	44.7
1155524:1155539	attL	NA	NA	NA	NA
AYB91938.1\|1155596_1156190_-	hypothetical protein	NA	NA	NA	NA
AYB91939.1\|1156449_1157475_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	9.2e-201	99.1
AYB91940.1\|1157478_1158111_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.1e-66	58.6
AYB91941.1\|1158227_1158467_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	8.8e-38	98.7
AYB91942.1\|1159020_1159254_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
AYB91943.1\|1159201_1159660_-	hypothetical protein	NA	NA	NA	NA
AYB91944.1\|1159879_1160221_+	hypothetical protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
AYB91945.1\|1160288_1160522_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
AYB91946.1\|1160521_1160749_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
AYB91947.1\|1160745_1161603_+	DNA adenine methylase	E5G6L8	Salmonella_phage	1.5e-164	99.6
AYB91948.1\|1161599_1163996_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	93.9
AYB91949.1\|1164151_1164340_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-26	100.0
AYB91950.1\|1164408_1164708_-	hypothetical protein	NA	NA	NA	NA
AYB91951.1\|1164818_1165625_-	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	6.2e-51	49.8
AYB91952.1\|1166117_1167272_+	DUF262 domain-containing protein	NA	NA	NA	NA
AYB91953.1\|1168051_1169083_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	5.0e-170	87.0
1168791:1168806	attR	NA	NA	NA	NA
AYB91954.1\|1169082_1170849_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.3
AYB91955.1\|1170991_1171825_+\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	5.9e-121	84.5
AYB91956.1\|1171841_1172900_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	4.9e-181	93.1
AYB91957.1\|1172903_1173554_+	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
AYB91958.1\|1173649_1174114_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.2e-76	89.0
AYB91959.1\|1174113_1174317_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
AYB91960.1\|1174320_1174536_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AYB95346.1\|1174555_1175029_+	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
AYB91961.1\|1175030_1175408_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	5.1e-16	39.2
AYB91962.1\|1175404_1175833_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.3e-47	76.1
AYB91963.1\|1175762_1175966_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	8.9e-23	73.1
AYB91964.1\|1175928_1176360_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.3e-71	93.7
AYB91965.1\|1176352_1176799_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	3.1e-60	81.1
AYB91966.1\|1176825_1177692_-	hypothetical protein	NA	NA	NA	NA
AYB91967.1\|1177787_1178366_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.8e-92	86.5
AYB91968.1\|1178362_1178722_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	3.5e-54	91.5
AYB91969.1\|1178708_1179617_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	7.2e-157	98.0
AYB91970.1\|1179609_1180215_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.3e-117	100.0
AYB91971.1\|1180211_1181897_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	3.5e-128	50.6
AYB91972.1\|1181899_1182427_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
AYB91973.1\|1182557_1183730_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.3e-222	99.5
AYB91974.1\|1183739_1184255_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
AYB91975.1\|1184309_1184612_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	9.4e-45	99.0
AYB91976.1\|1184626_1184746_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
AYB91977.1\|1184738_1187546_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.0
AYB91978.1\|1187542_1188028_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
AYB91979.1\|1188024_1189125_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	9.0e-194	98.6
AYB91980.1\|1189193_1189412_+	levansucrase regulator	Q53ZE7	Salmonella_virus	2.1e-38	100.0
AYB95347.1\|1189963_1191127_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AYB91981.1\|1193306_1194716_-	type I secretion protein TolC	NA	NA	NA	NA
AYB91982.1\|1194780_1206000_-	biofilm-associated protein BapA	NA	NA	NA	NA
AYB95348.1\|1206614_1207097_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AYB91983.1\|1207246_1207723_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AYB91984.1\|1207712_1208003_+	RnfH family protein	NA	NA	NA	NA
AYB91985.1\|1208168_1208507_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AYB91986.1\|1208655_1210317_-	DNA repair protein RecN	NA	NA	NA	NA
AYB95350.1\|1210402_1211281_-	NAD(+) kinase	NA	NA	NA	NA
AYB95349.1\|1211404_1211995_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AYB91987.1\|1212029_1212635_-	cytoplasmic protein	NA	NA	NA	NA
AYB91988.1\|1212755_1213997_-	DUF21 domain-containing protein	NA	NA	NA	NA
AYB91989.1\|1214061_1214853_-	inner membrane protein YpjD	NA	NA	NA	NA
AYB91990.1\|1214798_1215095_-	hypothetical protein	NA	NA	NA	NA
AYB91991.1\|1215018_1216380_+	signal recognition particle protein	NA	NA	NA	NA
AYB91992.1\|1216632_1216881_+	30S ribosomal protein S16	NA	NA	NA	NA
AYB95351.1\|1216899_1217448_+	ribosome maturation factor RimM	NA	NA	NA	NA
AYB91993.1\|1217492_1218260_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

1481366 : 1487405

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB92208.1\|1481366_1481597_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	5.4e-08	68.6
AYB92209.1\|1481535_1481679_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.7e-12	82.9
AYB92210.1\|1482668_1484591_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	8.1e-299	76.9
AYB92211.1\|1484608_1484863_-	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
AYB95359.1\|1484831_1485221_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	1.1e-50	85.6
AYB92212.1\|1486463_1487405_-	hypothetical protein	E7DYY8	Enterobacteria_phage	1.6e-146	87.8

DBSCAN-SWA_3

1723602 : 1732773

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB92430.1\|1723602_1724550_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AYB92431.1\|1724533_1725265_+	ABC transporter permease	NA	NA	NA	NA
AYB92432.1\|1725245_1725353_-	protein YohO	NA	NA	NA	NA
AYB92433.1\|1725412_1726144_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.2e-100	87.4
AYB92434.1\|1726366_1728052_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.4e-278	91.1
AYB92435.1\|1728048_1728768_+	DNA-binding response regulator	NA	NA	NA	NA
AYB92436.1\|1728814_1729282_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	8.8e-74	89.7
AYB92437.1\|1729338_1729869_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AYB92438.1\|1730040_1730499_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	7.1e-52	71.2
AYB92439.1\|1730739_1732773_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.1e-55	26.9

DBSCAN-SWA_4

1799970 : 1810477

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB92491.1\|1799970_1801374_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5
AYB92492.1\|1801551_1802445_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AYB92493.1\|1802821_1803907_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AYB92494.1\|1803906_1804806_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
AYB95369.1\|1804853_1805732_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
AYB92495.1\|1805732_1806284_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
AYB92496.1\|1806289_1807264_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AYB92497.1\|1807279_1808053_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AYB92498.1\|1808057_1809137_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
AYB92499.1\|1809163_1810477_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_5

1923405 : 1969616

Salmonella_phage(84.91%)

terminase,integrase,tail,head,plate,holin,transposase,capsid

attL 1921377:1921391|attR 1941697:1941711

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1921377:1921391	attL	NA	NA	NA	NA
AYB95375.1\|1923405_1924680_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	8.2e-74	40.1
AYB92610.1\|1925035_1925833_-	protein MtfA	NA	NA	NA	NA
AYB92611.1\|1926124_1927114_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
AYB92612.1\|1927115_1927358_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	2.1e-39	98.8
AYB92613.1\|1927382_1927952_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	5.8e-104	91.0
AYB92614.1\|1927948_1928698_-	hypothetical protein	H6WRY2	Salmonella_phage	1.1e-46	83.6
AYB92615.1\|1928701_1929175_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	5.0e-69	80.3
AYB92616.1\|1929174_1929912_-	ead/Ea22-like family protein	A0A0M5M1J9	Salmonella_phage	1.8e-52	86.3
AYB92617.1\|1929982_1930522_-	HD family hydrolase	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AYB92618.1\|1930658_1931486_-	DUF2303 family protein	Q8HAA2	Salmonella_phage	1.0e-149	97.5
AYB92619.1\|1931543_1931915_-	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
AYB92620.1\|1932451_1932697_+	hypothetical protein	NA	NA	NA	NA
AYB92621.1\|1932614_1932911_-	hypothetical protein	Q8SBF7	Shigella_phage	1.1e-50	98.0
AYB92622.1\|1932891_1933143_-	hypothetical protein	NA	NA	NA	NA
AYB92623.1\|1933070_1933256_-	hypothetical protein	A0A1C9II97	Salmonella_phage	1.2e-13	73.3
AYB92624.1\|1933460_1934156_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	4.6e-127	99.6
AYB92625.1\|1934129_1934315_+	amino acid permease	NA	NA	NA	NA
AYB92626.1\|1934253_1934478_+	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AYB92627.1\|1934506_1935061_+	hypothetical protein	A0A1C9II13	Salmonella_phage	5.9e-101	99.5
AYB92628.1\|1935057_1936200_+	peptidase	A0A1C9IHV9	Salmonella_phage	1.6e-182	87.6
AYB92629.1\|1936196_1936421_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AYB92630.1\|1936417_1937392_+	hypothetical protein	A0A1C9IHW0	Salmonella_phage	1.2e-165	98.1
AYB92631.1\|1937388_1937862_+	PerC family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	6.6e-53	93.8
AYB92632.1\|1937858_1938740_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.1e-170	99.3
AYB92633.1\|1938748_1939138_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.9e-70	100.0
AYB92634.1\|1939109_1940015_+	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	2.8e-161	99.0
AYB95376.1\|1940022_1941012_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	3.0e-188	97.0
AYB92635.1\|1941025_1941778_+	antitermination protein	A0A192Y5X6	Salmonella_phage	2.4e-134	92.0
1941697:1941711	attR	NA	NA	NA	NA
AYB92636.1\|1941809_1941998_+	hypothetical protein	NA	NA	NA	NA
AYB92637.1\|1942066_1942309_+	hypothetical protein	NA	NA	NA	NA
AYB92638.1\|1942440_1942794_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.0e-50	88.7
AYB92639.1\|1942797_1943274_+	lysozyme	Q8SBE0	Shigella_phage	1.7e-85	96.8
AYB92640.1\|1943257_1943650_+	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	1.6e-57	92.3
AYB92641.1\|1943534_1943807_+	peptidase	Q8SBD8	Shigella_phage	3.8e-29	77.6
AYB92642.1\|1944175_1944610_+	hypothetical protein	NA	NA	NA	NA
AYB92643.1\|1944737_1945088_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	8.0e-64	97.4
AYB92644.1\|1945205_1945709_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	3.6e-89	100.0
AYB92645.1\|1945705_1947439_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	99.8
AYB92646.1\|1947450_1947633_+	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
AYB92647.1\|1949515_1950721_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	1.6e-223	100.0
AYB92648.1\|1950771_1950972_+	hypothetical protein	Q8HAD1	Salmonella_phage	1.4e-28	100.0
AYB92649.1\|1950974_1951298_+\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
AYB92650.1\|1951294_1951699_+\|head,tail	head-tail adaptor protein	A0A192Y6C2	Salmonella_phage	5.4e-72	99.3
AYB92651.1\|1951670_1952183_+	hypothetical protein	Q8HAC8	Salmonella_phage	4.6e-92	100.0
AYB92652.1\|1952179_1952740_+	hypothetical protein	Q8HAC7	Salmonella_phage	8.8e-105	99.5
AYB92653.1\|1952743_1952908_+	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	1.0e-24	100.0
AYB92654.1\|1952897_1954394_+\|tail	phage tail protein	Q8HAC5	Salmonella_phage	6.1e-278	99.8
AYB92655.1\|1954393_1954750_+\|tail	phage tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
AYB92656.1\|1954746_1955073_+\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
AYB92657.1\|1955157_1957086_+\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.7
AYB92658.1\|1957119_1958460_+	DNA circularization protein	A0A192Y5U9	Salmonella_phage	5.7e-251	99.6
AYB92659.1\|1958456_1959521_+\|plate	baseplate protein	Q8HAC0	Salmonella_phage	4.2e-188	95.1
AYB92660.1\|1959513_1960047_+\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	1.4e-96	100.0
AYB92661.1\|1960051_1960465_+	hypothetical protein	Q8HAB8	Salmonella_phage	1.1e-75	100.0
AYB92662.1\|1960457_1961537_+\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.5e-204	99.7
AYB92663.1\|1961539_1962127_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
AYB92664.1\|1962113_1963676_+\|tail	phage tail protein	Q8HAB4	Salmonella_phage	2.6e-287	100.0
AYB92665.1\|1963675_1964245_+\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	7.3e-107	100.0
AYB92666.1\|1964529_1965537_-	type III secretion system effector arginine glycosyltransferase	Q8HAB2	Salmonella_phage	7.9e-197	100.0
AYB92667.1\|1965749_1965971_+	DNA-binding protein	Q8HAB1	Salmonella_phage	1.2e-36	100.0
AYB92668.1\|1966334_1966517_+	hypothetical protein	NA	NA	NA	NA
AYB92669.1\|1966909_1967287_+	hypothetical protein	NA	NA	NA	NA
AYB92670.1\|1967313_1968132_+	hypothetical protein	NA	NA	NA	NA
AYB92671.1\|1968593_1969616_+\|transposase	IS110-like element ISSaen1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2661812 : 2760346

108

Enterobacteria_phage(24.0%)

lysis,protease,terminase,portal,integrase,tail,holin,tRNA

attL 2691595:2691610|attR 2760347:2760511

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB93339.1\|2661812_2662508_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
AYB93340.1\|2662565_2664476_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	4.5e-92	32.7
AYB93341.1\|2664606_2664951_+	RidA family protein	NA	NA	NA	NA
AYB93342.1\|2664956_2665136_-	YoaH family protein	NA	NA	NA	NA
AYB93343.1\|2665216_2666581_+	aminodeoxychorismate synthase component 1	A0A0B5J984	Pandoravirus	3.6e-43	34.5
AYB93344.1\|2666584_2667163_+	coenzyme A pyrophosphatase	NA	NA	NA	NA
AYB93345.1\|2667426_2668791_+	L-serine ammonia-lyase	NA	NA	NA	NA
AYB93346.1\|2668928_2670530_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
AYB93347.1\|2670551_2672111_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	9.5e-40	44.4
AYB93348.1\|2672098_2672434_-	hypothetical protein	NA	NA	NA	NA
AYB93349.1\|2672583_2673552_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
AYB93350.1\|2673604_2674405_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
AYB93351.1\|2674417_2675269_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
AYB93352.1\|2675327_2675786_+	DUF986 domain-containing protein	NA	NA	NA	NA
AYB95408.1\|2676141_2676762_+	manganese efflux pump MntP	NA	NA	NA	NA
AYB93353.1\|2676758_2677568_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
AYB93354.1\|2677633_2679379_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
AYB93355.1\|2679598_2679808_-	cold-shock protein CspC	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
AYB93356.1\|2679820_2679964_-	DUF2627 domain-containing protein	NA	NA	NA	NA
AYB93357.1\|2680612_2680900_-	hypothetical protein	NA	NA	NA	NA
AYB93358.1\|2680970_2681114_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA
AYB93359.1\|2681271_2681511_+	hypothetical protein	NA	NA	NA	NA
AYB93360.1\|2681722_2682514_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
AYB93361.1\|2682689_2684063_+	MFS transporter	NA	NA	NA	NA
AYB93362.1\|2684110_2684992_-\|protease	protease HtpX	NA	NA	NA	NA
AYB93363.1\|2685184_2687233_-\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
AYB93364.1\|2687252_2687939_-	RNA chaperone ProQ	NA	NA	NA	NA
AYB93365.1\|2688036_2688621_-	GAF domain-containing protein	NA	NA	NA	NA
AYB93366.1\|2688662_2689946_+	paraquat-inducible protein A	NA	NA	NA	NA
AYB93367.1\|2689908_2692548_+	PqiB family protein	NA	NA	NA	NA
2691595:2691610	attL	NA	NA	NA	NA
AYB95409.1\|2692625_2694065_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
2691595:2691610	attL	NA	NA	NA	NA
AYB93368.1\|2694179_2694419_+	DUF1480 family protein	NA	NA	NA	NA
AYB93369.1\|2694529_2694721_+	DUF1482 family protein	NA	NA	NA	NA
AYB93370.1\|2694739_2695390_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	7.2e-58	50.9
AYB93371.1\|2695613_2695778_-	hypothetical protein	NA	NA	NA	NA
AYB93372.1\|2696062_2696785_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
AYB93373.1\|2697468_2697810_+	DUF1398 domain-containing protein	NA	NA	NA	NA
AYB93374.1\|2698191_2698668_+	hypothetical protein	NA	NA	NA	NA
AYB93375.1\|2699040_2699460_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYB93376.1\|2699588_2699783_-	hypothetical protein	NA	NA	NA	NA
AYB93377.1\|2699829_2700099_+	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
AYB93378.1\|2700264_2700405_+	hypothetical protein	NA	NA	NA	NA
AYB95410.1\|2702713_2702914_-	hypothetical protein	NA	NA	NA	NA
AYB93379.1\|2704580_2704739_+	hypothetical protein	NA	NA	NA	NA
AYB93380.1\|2704748_2705363_+	disulfide bond formation protein B	NA	NA	NA	NA
AYB93381.1\|2706115_2706382_-	hypothetical protein	NA	NA	NA	NA
AYB93382.1\|2706510_2706636_-	arsenic transporter	NA	NA	NA	NA
AYB93383.1\|2706897_2707002_+\|tail	phage tail protein	NA	NA	NA	NA
AYB93384.1\|2707203_2707404_+	phage virulence factor	NA	NA	NA	NA
AYB93385.1\|2708862_2709054_+	hypothetical protein	NA	NA	NA	NA
AYB93386.1\|2709118_2709286_+	lytic enzyme	NA	NA	NA	NA
AYB93387.1\|2709542_2710076_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	3.2e-11	43.0
AYB93388.1\|2710072_2710360_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.6e-38	93.9
AYB93389.1\|2711493_2712573_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.1e-98	52.0
AYB93390.1\|2713526_2714327_+	hypothetical protein	NA	NA	NA	NA
AYB93391.1\|2714806_2715529_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
AYB93392.1\|2715730_2716300_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.4e-96	90.5
AYB93393.1\|2716299_2718717_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	4.7e-86	62.8
2717199:2717214	attR	NA	NA	NA	NA
AYB93394.1\|2718770_2719013_-	hypothetical protein	NA	NA	NA	NA
2717199:2717214	attR	NA	NA	NA	NA
AYB93395.1\|2719051_2719915_-	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	9.0e-48	78.9
AYB93396.1\|2722475_2723180_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-67	63.1
AYB93397.1\|2723083_2723815_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.0e-113	75.6
AYB93398.1\|2723824_2724520_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
AYB93399.1\|2724609_2725143_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AYB93400.1\|2725259_2725757_-	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	35.9
AYB93401.1\|2725855_2726188_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
AYB95411.1\|2726184_2729172_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	2.8e-266	62.1
AYB93402.1\|2729251_2729581_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
AYB93403.1\|2729577_2729976_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
AYB93404.1\|2730021_2730771_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	4.8e-90	68.6
AYB93405.1\|2730782_2731184_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	2.0e-42	60.9
AYB93406.1\|2731180_2731747_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	2.1e-13	95.7
AYB93407.1\|2731727_2732027_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
AYB93408.1\|2732019_2732343_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
AYB95413.1\|2732433_2734515_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
AYB95412.1\|2734438_2735956_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	4.9e-174	64.7
AYB93409.1\|2735982_2736189_-	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
AYB93410.1\|2736185_2738324_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
AYB93411.1\|2738280_2738814_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	7.8e-34	48.1
AYB95415.1\|2739021_2739501_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
AYB93412.1\|2739518_2739971_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AYB95414.1\|2739954_2740284_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AYB93413.1\|2740559_2741246_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
AYB93414.1\|2741606_2742056_+	hypothetical protein	NA	NA	NA	NA
AYB95416.1\|2742429_2742954_-	hypothetical protein	NA	NA	NA	NA
AYB93415.1\|2743050_2743740_-	antiterminator	I6PDF8	Cronobacter_phage	2.1e-60	54.9
AYB93416.1\|2743869_2744097_-	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
AYB93417.1\|2744093_2744693_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.7e-96	82.9
AYB93418.1\|2744756_2745062_-	hypothetical protein	NA	NA	NA	NA
AYB93419.1\|2745484_2745676_+	hypothetical protein	NA	NA	NA	NA
AYB93420.1\|2745693_2747673_-	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
AYB93421.1\|2748069_2749200_+	GGDEF domain-containing protein	NA	NA	NA	NA
AYB93422.1\|2749486_2749882_-	DUF977 family protein	A0A088CBK9	Shigella_phage	9.8e-18	38.8
AYB93423.1\|2749894_2750356_-	replication protein	A0A0U2JGJ0	Escherichia_phage	3.5e-67	75.5
AYB93424.1\|2750348_2751347_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.1e-121	67.3
AYB93425.1\|2751393_2751888_-	hypothetical protein	NA	NA	NA	NA
AYB93426.1\|2751874_2752129_-	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
AYB93427.1\|2752227_2752626_+	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
AYB93428.1\|2753028_2753295_+	hypothetical protein	NA	NA	NA	NA
AYB93429.1\|2753643_2753919_+	hypothetical protein	NA	NA	NA	NA
AYB93430.1\|2753922_2754129_+	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
AYB93431.1\|2754204_2754540_+	hypothetical protein	NA	NA	NA	NA
AYB93432.1\|2754680_2757371_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	4.0e-118	72.8
AYB93433.1\|2757363_2758194_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	2.5e-103	71.6
AYB93434.1\|2758240_2758426_+	DUF1187 family protein	NA	NA	NA	NA
AYB95417.1\|2758716_2758953_+	hypothetical protein	NA	NA	NA	NA
AYB93435.1\|2759013_2759292_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.8e-10	37.5
AYB93436.1\|2759266_2760346_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.5e-100	52.5
2760347:2760511	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2862445 : 2872153

Burkholderia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB93544.1\|2862445_2864158_-	cellulose synthesis regulatory protein	A0A127AWB9	Bacillus_phage	1.6e-19	37.4
AYB93545.1\|2864322_2864568_-	DUF2158 domain-containing protein	NA	NA	NA	NA
AYB93546.1\|2864584_2865502_-	DUF808 domain-containing protein	NA	NA	NA	NA
AYB93547.1\|2865671_2866592_+	drug/metabolite exporter YedA	NA	NA	NA	NA
AYB93548.1\|2866580_2867051_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	1.2e-30	46.9
AYB93549.1\|2867031_2868462_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	57.4
AYB93550.1\|2868535_2869231_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AYB93551.1\|2869310_2869622_-	hypothetical protein	NA	NA	NA	NA
AYB93552.1\|2870271_2870829_+	porin	Q1MVN1	Enterobacteria_phage	2.0e-64	68.4
AYB93553.1\|2871084_2871483_+	hypothetical protein	Q1MVN1	Enterobacteria_phage	2.7e-31	55.0
AYB95423.1\|2871741_2871930_-	cold-shock protein	NA	NA	NA	NA
AYB93554.1\|2871940_2872153_-	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0

DBSCAN-SWA_8

2957073 : 3001036

Escherichia_phage(33.33%)

tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB93636.1\|2957073_2957754_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	1.6e-84	72.4
AYB93637.1\|2958392_2959052_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
AYB93638.1\|2959138_2959468_+	sulfurtransferase TusE	NA	NA	NA	NA
AYB93639.1\|2959464_2959746_-	acylphosphatase	NA	NA	NA	NA
AYB93640.1\|2959794_2960574_-	AraC family transcriptional regulator	NA	NA	NA	NA
AYB93641.1\|2960599_2961148_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AYB93642.1\|2961362_2962574_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AYB93643.1\|2962631_2962949_+	heat-shock protein HspQ	NA	NA	NA	NA
AYB93644.1\|2962993_2963410_-	CoA-binding protein	NA	NA	NA	NA
AYB93645.1\|2963580_2964243_+	DUF2057 family protein	NA	NA	NA	NA
AYB93646.1\|2964337_2964796_+	methylglyoxal synthase	NA	NA	NA	NA
AYB93647.1\|2964831_2966886_-	DNA helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
AYB93648.1\|2967009_2967456_+	YccF domain-containing protein	NA	NA	NA	NA
AYB93649.1\|2967474_2969628_+	TIGR01666 family membrane protein	NA	NA	NA	NA
AYB93650.1\|2969614_2970220_-	DNA transformation protein	NA	NA	NA	NA
AYB93651.1\|2970436_2970946_+	cell division inhibitor SulA	NA	NA	NA	NA
AYB93652.1\|2971302_2972355_+	outer membrane protein A	NA	NA	NA	NA
AYB93653.1\|2972426_2972879_-	macrodomain Ter protein	NA	NA	NA	NA
AYB93654.1\|2973064_2974825_+\|protease	Lon protease family protein	NA	NA	NA	NA
AYB93655.1\|2974893_2975412_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AYB93656.1\|2975511_2975679_-	ribosome modulation factor	NA	NA	NA	NA
AYB93657.1\|2975934_2976498_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
AYB93658.1\|2976494_2978135_-	intermembrane transport protein PqiB	NA	NA	NA	NA
AYB93659.1\|2978139_2979393_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
AYB93660.1\|2979407_2981315_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AYB93661.1\|2981327_2983436_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AYB93662.1\|2983534_2984644_+	MOSC domain-containing protein	NA	NA	NA	NA
AYB93663.1\|2984640_2985183_-	cell division protein ZapC	NA	NA	NA	NA
AYB93664.1\|2985348_2986359_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AYB93665.1\|2986566_2989179_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8
AYB93666.1\|2989605_2989797_+	DinI family protein	S4TNM0	Salmonella_phage	1.8e-25	93.7
AYB93667.1\|2990067_2990754_+	virulence protein	NA	NA	NA	NA
AYB93668.1\|2991113_2991740_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AYB93669.1\|2992387_2993356_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	3.3e-192	99.1
AYB93670.1\|2993581_2993830_+\|tail	phage tail protein	A0A1B0VCD0	Salmonella_phage	2.1e-18	66.2
AYB93671.1\|2993833_2994415_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
AYB93672.1\|2994414_2996124_-\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.5e-91	66.0
AYB93673.1\|2996120_2996747_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
AYB93674.1\|2996730_2997957_-	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	3.2e-147	63.6
AYB93675.1\|2997953_2998286_-	hypothetical protein	NA	NA	NA	NA
AYB93676.1\|2998282_2998999_-	hypothetical protein	NA	NA	NA	NA
AYB93677.1\|2998995_3000048_-	hypothetical protein	NA	NA	NA	NA
AYB93678.1\|3000047_3000323_-	hypothetical protein	A0A0U2JGJ3	Escherichia_phage	1.6e-06	33.3
AYB93679.1\|3000538_3001036_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	8.9e-24	38.0

DBSCAN-SWA_9

3007978 : 3033612

Salmonella_phage(72.41%)

terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYB93687.1\|3007978_3009010_-	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	2.5e-73	45.2
AYB93688.1\|3009027_3009900_-	hypothetical protein	NA	NA	NA	NA
AYB93689.1\|3009920_3011495_-	NUDIX hydrolase	Q6UJ14	Burkholderia_virus	2.2e-20	48.6
AYB93690.1\|3011495_3012371_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.5e-55	45.5
AYB93691.1\|3012342_3013773_-	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	2.6e-92	37.9
AYB93692.1\|3013772_3015044_-	hypothetical protein	A0A0U2JTW9	Escherichia_phage	1.1e-83	38.3
AYB93693.1\|3015033_3016008_-\|terminase	terminase small subunit	C5IHM0	Burkholderia_virus	1.6e-29	37.3
AYB93694.1\|3016069_3016483_-	hypothetical protein	NA	NA	NA	NA
AYB93695.1\|3016472_3017024_-	DUF2514 domain-containing protein	NA	NA	NA	NA
AYB93696.1\|3017020_3017635_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.2e-107	94.1
AYB93697.1\|3017637_3017985_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.3e-45	80.4
AYB93698.1\|3018383_3019181_-	antitermination protein	A0A0M4S661	Salmonella_phage	4.4e-150	99.2
AYB93699.1\|3019170_3019317_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
AYB93700.1\|3019313_3019925_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
AYB93701.1\|3019927_3020134_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AYB93702.1\|3020133_3020736_-	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
AYB93703.1\|3020775_3021081_-	hypothetical protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
AYB93704.1\|3021070_3021310_-	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
AYB93705.1\|3021465_3021732_-	hypothetical protein	S4TNF2	Salmonella_phage	1.5e-46	100.0
AYB93706.1\|3021825_3022398_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
AYB93707.1\|3022401_3022875_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	4.7e-67	79.5
AYB93708.1\|3022874_3023399_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
AYB93709.1\|3023395_3023743_-	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
AYB93710.1\|3023753_3024503_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
AYB93711.1\|3024505_3025489_-	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
AYB93712.1\|3025573_3025948_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AYB93713.1\|3025913_3026150_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.8e-38	100.0
AYB93714.1\|3026279_3026684_+	transcriptional regulator	H6WRX4	Salmonella_phage	7.1e-72	99.3
AYB93715.1\|3027393_3030582_+	DNA breaking-rejoining protein	S4TNL0	Salmonella_phage	0.0e+00	74.0
AYB93716.1\|3031746_3031986_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AYB93717.1\|3032026_3032275_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AYB93718.1\|3032319_3033612_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.3e-252	99.8

DBSCAN-SWA_10

3104581 : 3111894

Ralstonia_phage(16.67%)

protease,integrase

attL 3099637:3099651|attR 3110630:3110644

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3099637:3099651	attL	NA	NA	NA	NA
AYB93772.1\|3104581_3104959_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
AYB93773.1\|3105120_3105318_+	hypothetical protein	NA	NA	NA	NA
AYB93774.1\|3105530_3107807_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AYB93775.1\|3107837_3108158_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AYB93776.1\|3108481_3108703_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AYB93777.1\|3108832_3110779_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	41.9
3110630:3110644	attR	NA	NA	NA	NA
AYB93778.1\|3110775_3111894_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	38.9

DBSCAN-SWA_11

3449351 : 3494988

Salmonella_phage(71.64%)

lysis,coat,protease,terminase,portal,integrase,tail,holin

attL 3449018:3449058|attR 3495006:3495046

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3449018:3449058	attL	NA	NA	NA	NA
AYB94074.1\|3449351_3449714_+	GtrA family protein	I1TED9	Salmonella_phage	3.9e-61	100.0
AYB94075.1\|3449710_3450637_+	glycosyltransferase	I1TED8	Salmonella_phage	1.4e-168	96.7
AYB94076.1\|3450617_3452270_+	hypothetical protein	B9UDL6	Salmonella_phage	1.5e-83	38.0
AYB94077.1\|3453753_3454116_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
AYB94078.1\|3454112_3455045_+	glycosyltransferase	A8CG95	Salmonella_phage	5.5e-176	100.0
AYB94079.1\|3455034_3456492_+	hypothetical protein	E7C9N7	Salmonella_phage	1.7e-240	99.8
AYB94080.1\|3456550_3458554_-	endorhamnosidase	E7C9U9	Salmonella_phage	0.0e+00	99.9
AYB94081.1\|3458689_3458941_+	Arc family DNA-binding protein	E7C9U8	Salmonella_phage	1.4e-38	100.0
AYB94082.1\|3459040_3459220_+	hypothetical protein	B8K1I9	Salmonella_phage	2.1e-28	100.0
AYB94083.1\|3459233_3459599_-	hypothetical protein	E7C9U7	Salmonella_phage	8.1e-67	100.0
AYB94084.1\|3459629_3459959_+	hypothetical protein	NA	NA	NA	NA
AYB94085.1\|3459976_3461890_-	DNA transfer protein	E7C9U6	Salmonella_phage	0.0e+00	100.0
AYB94086.1\|3461889_3463194_-	acyltransferase	E7C9U5	Salmonella_phage	7.8e-213	96.3
AYB94087.1\|3463204_3463894_-	DNA transfer protein	E7C9U4	Salmonella_phage	1.2e-108	99.6
AYB94088.1\|3463896_3464352_-	DUF2824 family protein	B8K1I4	Salmonella_phage	1.4e-87	100.0
AYB94089.1\|3464351_3465053_-\|tail	phage tail protein	B8K1I3	Salmonella_phage	8.8e-70	98.3
AYB94090.1\|3465056_3466475_-	hypothetical protein	I1TEJ1	Salmonella_phage	3.3e-273	98.3
AYB94091.1\|3466434_3466935_-	hypothetical protein	I1TEJ0	Salmonella_phage	5.5e-90	98.8
AYB94092.1\|3466918_3467479_-	hypothetical protein	C6ZR11	Salmonella_phage	1.4e-102	98.9
AYB94093.1\|3467519_3468812_-\|coat	coat protein	C6ZR10	Salmonella_phage	1.1e-243	99.8
AYB94094.1\|3468811_3469723_-	scaffolding protein	A0A1R3Y5R6	Salmonella_virus	4.9e-161	100.0
AYB94095.1\|3469736_3471914_-\|portal	portal protein	I6R968	Salmonella_phage	0.0e+00	98.3
AYB94096.1\|3471913_3473413_-\|terminase	terminase	A8CGE0	Salmonella_phage	6.9e-306	99.8
AYB94097.1\|3473390_3473879_-	DNA-packaging protein	A8CGG1	Salmonella_phage	2.9e-88	100.0
AYB94098.1\|3473882_3474287_-	Decoration protein	C6ZR73	Salmonella_phage	5.3e-67	100.0
AYB94099.1\|3474286_3474676_-	hypothetical protein	C6ZR72	Salmonella_phage	1.5e-74	99.2
AYB94100.1\|3474679_3474922_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
AYB94101.1\|3475180_3475711_-	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	4.0e-91	96.6
AYB94102.1\|3475664_3475889_-	hypothetical protein	A0A1V0E5I0	Salmonella_phage	7.2e-26	90.3
AYB94103.1\|3475923_3476394_-\|lysis	lysis protein	H6WRZ5	Salmonella_phage	1.2e-62	87.2
AYB94104.1\|3476390_3476828_-	lysozyme	Q5G8R3	Enterobacteria_phage	6.3e-74	97.9
AYB94105.1\|3476811_3477138_-\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
AYB94106.1\|3477273_3477471_-	hypothetical protein	C6ZR63	Salmonella_phage	5.0e-23	96.2
AYB94107.1\|3477517_3478006_-	DUF1133 family protein	I6S672	Salmonella_phage	3.0e-77	87.0
AYB94108.1\|3478075_3478279_-	protein ninH	A0A075B8J4	Enterobacteria_phage	5.7e-30	94.0
AYB94109.1\|3478275_3478671_-	RusA family crossover junction endodeoxyribonuclease	A0A0M4REJ2	Salmonella_phage	2.9e-70	96.9
AYB94110.1\|3478667_3478964_-	hypothetical protein	A0A0M3ULJ7	Salmonella_phage	7.5e-47	98.9
AYB94111.1\|3478926_3479103_-	NinF family protein	A0A0M4S6T3	Salmonella_phage	1.8e-27	96.6
AYB94112.1\|3479099_3479282_-	NinE family protein	Q716C5	Shigella_phage	1.8e-27	96.7
AYB94113.1\|3479248_3479422_-	protein ninD	C6ZR56	Salmonella_phage	7.0e-29	93.0
AYB94114.1\|3479418_3480291_-	hypothetical protein	I6R0S6	Salmonella_phage	6.1e-169	93.4
AYB94115.1\|3480287_3480746_-	recombination protein NinB	K7PKW7	Enterobacterial_phage	3.0e-79	98.6
AYB94116.1\|3480801_3482178_-	replicative DNA helicase	A0A192Y673	Salmonella_phage	4.8e-253	99.3
AYB94117.1\|3482986_3483133_-	DUF2740 domain-containing protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
AYB94118.1\|3483167_3483449_-	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
AYB94119.1\|3483559_3483775_-	transcriptional regulator	Q76H55	Enterobacteria_phage	1.3e-32	100.0
AYB94120.1\|3483885_3484575_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
AYB94121.1\|3484663_3485587_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	1.5e-181	100.0
AYB94122.1\|3485622_3485832_-	fumarate hydratase FumD	I6R0R9	Salmonella_phage	5.5e-28	91.3
AYB94123.1\|3486195_3486528_+	hypothetical protein	A0A1R3Y5R1	Salmonella_virus	2.2e-55	100.0
AYB94124.1\|3486606_3486807_+	restriction endonuclease	A0A1R3Y5S4	Salmonella_virus	1.0e-31	100.0
AYB94125.1\|3486846_3487146_+	hypothetical protein	A0A1R3Y5U4	Salmonella_virus	3.3e-50	99.0
AYB94126.1\|3487469_3487610_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	2.0e-18	84.8
AYB94127.1\|3487602_3487716_+	host cell division inhibitory peptide Kil	C6ZR39	Salmonella_phage	7.8e-13	100.0
AYB94128.1\|3487712_3487901_+	hypothetical protein	C6ZR38	Salmonella_phage	1.3e-28	100.0
AYB94129.1\|3487909_3488617_+	recombinase	E7C9Q0	Salmonella_phage	9.7e-125	89.8
AYB94130.1\|3488617_3489124_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	3.8e-91	98.8
AYB94131.1\|3489132_3489681_+	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	2.1e-106	100.0
AYB94132.1\|3489696_3489990_+	DUF2856 family protein	A0A1V0E5L7	Salmonella_phage	5.5e-50	100.0
AYB94133.1\|3490000_3490171_+	DUF2737 family protein	I6S642	Salmonella_phage	6.1e-25	100.0
AYB94134.1\|3490167_3490749_+	Eae-like protein	A0A0N6WGF1	Salmonella_phage	5.2e-68	71.5
AYB94135.1\|3491133_3491427_+	hypothetical protein	A0A1V0E5L2	Salmonella_phage	4.2e-50	99.0
AYB94136.1\|3491423_3492506_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	6.5e-80	75.2
AYB94137.1\|3492450_3492780_+	ASCH domain-containing protein	Q9XJG9	Enterobacteria_phage	1.0e-52	94.2
AYB94138.1\|3492861_3493173_+	hypothetical protein	A0A1I9LJL8	Stx_converting_phage	7.9e-55	99.0
AYB95447.1\|3493250_3493595_+	hypothetical protein	A0A0P0ZB93	Stx2-converting_phage	1.1e-57	97.4
AYB94139.1\|3493597_3493969_+	DNA-binding protein	B9UDM0	Salmonella_phage	2.1e-46	80.5
AYB94140.1\|3493824_3494988_+\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	1.0e-219	97.1
3495006:3495046	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032380

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP032379

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection