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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP030828 Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence 0 crisprs NA 0 0 1 0
CP030831 Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence 0 crisprs NA 0 0 0 0
CP030830 Neorhizobium sp. NCHU2750 plasmid pNCHU2750c, complete sequence 0 crisprs RT,DEDDh 0 0 2 0
CP030827 Neorhizobium sp. NCHU2750 chromosome, complete genome 0 crisprs csa3,WYL,DEDDh 0 0 10 0
CP030833 Neorhizobium sp. NCHU2750 plasmid pNCHU2750e, complete sequence 0 crisprs NA 0 0 0 0
CP030829 Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence 0 crisprs NA 0 0 0 0
CP030832 Neorhizobium sp. NCHU2750 plasmid pNCHU2750d, complete sequence 0 crisprs csa3,DEDDh 0 0 1 0

Results visualization

1. CP030827
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 192329 : 205305 11 Sulfitobacter_phage(33.33%) transposase,integrase attL 185125:185139|attR 198353:198367
DBSCAN-SWA_2 624052 : 632971 14 Sinorhizobium_phage(25.0%) integrase attL 613975:613988|attR 632177:632190
DBSCAN-SWA_3 645343 : 667155 26 Rhizobium_phage(47.06%) tail,head,terminase,capsid NA
DBSCAN-SWA_4 839829 : 864700 28 Paracoccus_phage(22.22%) head,protease,capsid,portal,tail NA
DBSCAN-SWA_5 1153673 : 1219456 47 Bacillus_virus(14.29%) transposase,protease,holin,integrase attL 1148507:1148521|attR 1231250:1231264
DBSCAN-SWA_6 1575355 : 1583637 8 uncultured_Mediterranean_phage(16.67%) NA NA
DBSCAN-SWA_7 2209631 : 2220307 12 uncultured_Mediterranean_phage(90.0%) tRNA NA
DBSCAN-SWA_8 2874007 : 2882175 14 Mesorhizobium_phage(33.33%) NA NA
DBSCAN-SWA_9 2887015 : 2898904 14 Sulfitobacter_phage(45.45%) head,terminase NA
DBSCAN-SWA_10 3453866 : 3479973 27 Burkholderia_virus(14.29%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP030828
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 419573 : 428292 8 Catovirus(33.33%) holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP030830
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 20989 : 73986 57 Planktothrix_phage(22.22%) protease,integrase,tail,transposase attL 26034:26049|attR 33158:33173
DBSCAN-SWA_2 227966 : 267552 39 Brochothrix_phage(20.0%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. CP030832
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5556 : 57892 57 uncultured_Caudovirales_phage(25.0%) transposase,integrase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage