CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP022924	Klebsiella pneumoniae strain ST307PT01 chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh,DinG,RT,WYL	6
CP022925	Klebsiella pneumoniae strain ST307PT01 plasmid pJYC01B sequence	0 crisprs	NA	1
CP022926	Klebsiella pneumoniae strain ST307PT01 plasmid pJYC01A, complete sequence	0 crisprs	RT,csa3	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP022924_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022924_1

4447584-4447678

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022924_1

>merge|CP022924|1|4447584-4447678|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP022924|1|1|4447584-4447678|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP022924.1\|AYD36327.1\|4446130_4447495_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP022924.1\|AYD36321.1\|4436702_4438205_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP022924.1\|AYD36333.1\|4454931_4455921_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP022924.1\|AYD36328.1\|4447819_4449445_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP022924.1\|AYD36323.1\|4439213_4441571_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP022924.1\|AYD36330.1\|4450165_4450993_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP022924.1\|AYD36320.1\|4434982_4436692_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP022924.1\|AYD36329.1\|4449434_4450133_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP022924.1\|AYD36335.1\|4456741_4457119_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP022924.1\|AYD36324.1\|4441758_4444665_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP022924.1\|AYD36336.1\|4457123_4457972_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP022924.1\|AYD36322.1\|4438342_4439038_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP022924.1\|AYD36319.1\|4433799_4434645_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP022924.1\|AYD36332.1\|4453639_4454926_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP022924.1\|AYD37292.1\|4445913_4446102_+\|hypothetical-protein	unknown	unknown	unknown
CP022924.1\|AYD36325.1\|4444677_4445337_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP022924.1\|AYD36331.1\|4451236_4453585_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP022924.1\|AYD36326.1\|4445411_4445951_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP022924.1\|AYD36334.1\|4455917_4456739_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP022924.1\|AYD36337.1\|4457924_4458128_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP022924.1\|AYD36327.1\|4446130_4447495_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP022924.1\|AYD36333.1\|4454931_4455921_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP022924.1\|AYD36328.1\|4447819_4449445_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	7.63459e-173
CP022924.1\|AYD36324.1\|4441758_4444665_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP022924.1\|AYD36330.1\|4450165_4450993_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
CP022924.1\|AYD36320.1\|4434982_4436692_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP022924.1\|AYD36329.1\|4449434_4450133_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.65624e-65
CP022924.1\|AYD36335.1\|4456741_4457119_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP022924.1\|AYD36323.1\|4439213_4441571_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP022924.1\|AYD36336.1\|4457123_4457972_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP022924.1\|AYD36322.1\|4438342_4439038_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP022924.1\|AYD36319.1\|4433799_4434645_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP022924.1\|AYD36332.1\|4453639_4454926_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP022924.1\|AYD36321.1\|4436702_4438205_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP022924.1\|AYD36325.1\|4444677_4445337_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
CP022924.1\|AYD36331.1\|4451236_4453585_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP022924.1\|AYD36326.1\|4445411_4445951_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
CP022924.1\|AYD36334.1\|4455917_4456739_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147

>CP022924.1|AYD36327.1|4446130_4447495_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP022924.1|AYD37292.1|4445913_4446102_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>CP022924.1|AYD36326.1|4445411_4445951_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP022924.1|AYD36325.1|4444677_4445337_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP022924.1|AYD36324.1|4441758_4444665_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP022924.1|AYD36323.1|4439213_4441571_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQEFSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP022924.1|AYD36322.1|4438342_4439038_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP022924.1|AYD36321.1|4436702_4438205_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP022924.1|AYD36320.1|4434982_4436692_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAHAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP022924.1|AYD36319.1|4433799_4434645_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP022924.1|AYD36328.1|4447819_4449445_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>CP022924.1|AYD36329.1|4449434_4450133_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSGREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP022924.1|AYD36330.1|4450165_4450993_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP022924.1|AYD36331.1|4451236_4453585_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP022924.1|AYD36332.1|4453639_4454926_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP022924.1|AYD36333.1|4454931_4455921_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVALNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP022924.1|AYD36334.1|4455917_4456739_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP022924.1|AYD36335.1|4456741_4457119_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP022924.1|AYD36336.1|4457123_4457972_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP022924.1|AYD36337.1|4457924_4458128_-|hypothetical-protein
MFPVAGFVFFLKRSPGRQTAHKRRSGKALAATRQNDAAGSPDKAQRAAIREESGRDGFAFVEAFLPV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

444814 : 514373

uncultured_Caudovirales_phage(61.11%)

capsid,tRNA,integrase,portal,tail,head,terminase,protease

attL 462601:462618|attR 478596:478613

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYD32743.1\|444814_445762_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
AYD32744.1\|445776_446286_-	peptide deformylase	E3SLL2	Synechococcus_phage	4.4e-18	39.5
AYD32745.1\|446414_447539_+	DNA-protecting protein DprA	NA	NA	NA	NA
AYD32746.1\|447510_447984_+	DUF494 domain-containing protein	NA	NA	NA	NA
AYD32747.1\|448010_448553_+	hypothetical protein	NA	NA	NA	NA
AYD32748.1\|448557_449130_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
AYD32749.1\|449133_449952_+	shikimate dehydrogenase	NA	NA	NA	NA
AYD32750.1\|449948_450206_+	DUF1488 domain-containing protein	NA	NA	NA	NA
AYD32751.1\|450181_450736_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
AYD32752.1\|450938_451121_+	hypothetical protein	NA	NA	NA	NA
AYD32753.1\|456514_456742_+	hypothetical protein	NA	NA	NA	NA
AYD32754.1\|456710_456932_-	hypothetical protein	NA	NA	NA	NA
AYD32755.1\|457224_460335_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
AYD32756.1\|460347_461487_-	MexX family efflux pump subunit	NA	NA	NA	NA
AYD32757.1\|461865_462519_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
462601:462618	attL	NA	NA	NA	NA
AYD32758.1\|462791_464018_+\|integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
AYD32759.1\|464110_465052_+	hypothetical protein	NA	NA	NA	NA
AYD32760.1\|465233_465518_+	transcriptional regulator	NA	NA	NA	NA
AYD32761.1\|465528_466308_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
AYD32762.1\|466431_466626_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
AYD37125.1\|466849_467029_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.6e-26	94.9
AYD32763.1\|467021_467210_+	hypothetical protein	NA	NA	NA	NA
AYD32764.1\|467202_467517_+	hypothetical protein	NA	NA	NA	NA
AYD32765.1\|467513_467882_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
AYD32766.1\|467878_468244_+	hypothetical protein	NA	NA	NA	NA
AYD32767.1\|468243_470379_+	DNA primase	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
AYD32768.1\|470721_471057_+	hypothetical protein	NA	NA	NA	NA
AYD32769.1\|471105_471618_-	hypothetical protein	NA	NA	NA	NA
AYD32770.1\|471881_473048_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
AYD32771.1\|473099_473660_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
AYD32772.1\|473661_474903_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
AYD32773.1\|474899_475235_+\|head,tail	head-tail adaptor	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
AYD32774.1\|475231_475531_+	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
AYD32775.1\|475530_475974_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
AYD32776.1\|476100_476292_+\|terminase	terminase	NA	NA	NA	NA
AYD32777.1\|476249_476606_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
AYD32778.1\|476589_478251_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
AYD32779.1\|478253_478445_+	hypothetical protein	NA	NA	NA	NA
AYD32780.1\|478598_478895_-	Fis family transcriptional regulator	NA	NA	NA	NA
478596:478613	attR	NA	NA	NA	NA
AYD32781.1\|478919_479885_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
AYD32782.1\|480042_480237_-	hypothetical protein	NA	NA	NA	NA
AYD32783.1\|481134_482586_-	sodium/panthothenate symporter	NA	NA	NA	NA
AYD32784.1\|482575_482818_-	hypothetical protein	NA	NA	NA	NA
AYD32785.1\|482928_484278_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
AYD32786.1\|484288_484756_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
AYD32787.1\|484778_485231_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
AYD32788.1\|485454_486063_-	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA
AYD32789.1\|486062_487064_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
AYD32790.1\|487292_487484_+	hypothetical protein	NA	NA	NA	NA
AYD32791.1\|487563_489504_+	RNase E specificity factor CsrD	NA	NA	NA	NA
AYD32792.1\|489625_489832_-	hypothetical protein	NA	NA	NA	NA
AYD32793.1\|489809_490853_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
AYD32794.1\|490923_491916_+	rod shape-determining protein MreC	NA	NA	NA	NA
AYD32795.1\|491915_492404_+	rod shape-determining protein MreD	NA	NA	NA	NA
AYD32796.1\|492411_492993_+	septum formation inhibitor Maf	NA	NA	NA	NA
AYD32797.1\|492995_494465_+	ribonuclease E/G	NA	NA	NA	NA
AYD32798.1\|494502_498303_+	TIGR02099 family protein	NA	NA	NA	NA
AYD32799.1\|498391_499837_+\|protease	metalloprotease TldD	NA	NA	NA	NA
AYD32800.1\|499872_500802_-	transcriptional regulator	NA	NA	NA	NA
AYD32801.1\|500933_501137_+	protein AaeX	NA	NA	NA	NA
AYD32802.1\|501144_502077_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
AYD32803.1\|502082_504050_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
AYD32804.1\|504129_504405_+	hypothetical protein	NA	NA	NA	NA
AYD32805.1\|504455_504722_-	DUF1471 domain-containing protein	NA	NA	NA	NA
AYD32806.1\|504820_505084_-	DUF1471 domain-containing protein	NA	NA	NA	NA
AYD32807.1\|505459_505930_-	arginine repressor	NA	NA	NA	NA
AYD32808.1\|506344_507283_+	malate dehydrogenase	NA	NA	NA	NA
AYD32809.1\|507419_508478_-\|protease	serine endoprotease DegS	NA	NA	NA	NA
AYD32810.1\|508565_509933_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
AYD32811.1\|510106_510505_-	hypothetical protein	NA	NA	NA	NA
AYD32812.1\|510695_511823_+	cell division protein ZapE	NA	NA	NA	NA
AYD32813.1\|512088_512517_+	50S ribosomal protein L13	NA	NA	NA	NA
AYD32814.1\|512532_512925_+	30S ribosomal protein S9	NA	NA	NA	NA
AYD32815.1\|513034_513238_-	hypothetical protein	NA	NA	NA	NA
AYD32816.1\|513236_513875_+	stringent starvation protein A	NA	NA	NA	NA
AYD32817.1\|513878_514373_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8

DBSCAN-SWA_2

660752 : 685622

uncultured_Caudovirales_phage(68.75%)

capsid,transposase,portal,integrase,tail,head,terminase

attL 666155:666202|attR 682973:683020

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYD32961.1\|660752_663995_-	histidine kinase	A0A1V0SGX0	Hokovirus	6.6e-35	33.9
AYD32962.1\|663999_664614_-	DNA-binding response regulator	NA	NA	NA	NA
AYD37130.1\|664966_665281_+	HdeB family protein	NA	NA	NA	NA
AYD32963.1\|665349_665622_-	hypothetical protein	NA	NA	NA	NA
666155:666202	attL	NA	NA	NA	NA
AYD32964.1\|666381_667806_+\|integrase	integrase	H7BV31	unidentified_phage	1.1e-07	27.2
AYD32965.1\|667798_668632_+	hypothetical protein	NA	NA	NA	NA
AYD32966.1\|668773_668983_+	DNA-binding protein	NA	NA	NA	NA
AYD32967.1\|668993_669944_+	hypothetical protein	A0A2H4JGN8	uncultured_Caudovirales_phage	4.4e-40	36.6
AYD32968.1\|669936_670134_+	hypothetical protein	NA	NA	NA	NA
AYD32969.1\|670126_670354_+	aminotransferase	A0A2H4JBA1	uncultured_Caudovirales_phage	1.6e-28	89.2
AYD32970.1\|670350_670719_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	1.8e-61	98.4
AYD32971.1\|670715_672080_+	hypothetical protein	A0A2H4JFA4	uncultured_Caudovirales_phage	5.8e-259	97.1
AYD32972.1\|672433_672670_+	hypothetical protein	NA	NA	NA	NA
AYD32973.1\|673243_674260_-\|transposase	IS5/IS1182 family transposase	Q38213	Escherichia_phage	4.4e-187	100.0
AYD32974.1\|674942_676103_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.8e-205	94.8
AYD32975.1\|676154_676715_+	peptidase	A0A2H4JB68	uncultured_Caudovirales_phage	4.4e-96	93.0
AYD37131.1\|676725_677952_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.5e-229	95.3
AYD32976.1\|677948_678290_+\|head,tail	head-tail adaptor	A0A286S2A2	Klebsiella_phage	6.3e-21	46.1
AYD32977.1\|678282_678576_+	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.8e-43	85.6
AYD32978.1\|678575_679019_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.5e-75	88.4
AYD32979.1\|679293_679650_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	1.6e-59	97.4
AYD32980.1\|679633_681295_+\|terminase	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	97.8
AYD32981.1\|681410_682862_+	AAA family ATPase	NA	NA	NA	NA
AYD32982.1\|683174_683681_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
682973:683020	attR	NA	NA	NA	NA
AYD32983.1\|683780_685622_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7

DBSCAN-SWA_3

1469858 : 1567347

Escherichia_phage(18.75%)

capsid,tRNA,holin,portal,integrase,plate,tail,head,terminase,protease

attL 1505064:1505088|attR 1544596:1544620

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYD33685.1\|1469858_1471208_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AYD33686.1\|1471892_1473569_+	OmpA family protein	NA	NA	NA	NA
AYD33687.1\|1473571_1474063_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AYD37154.1\|1476849_1477392_+	DUF3828 domain-containing protein	NA	NA	NA	NA
AYD33688.1\|1477465_1477936_+	DUF3828 domain-containing protein	NA	NA	NA	NA
AYD37155.1\|1478278_1480681_+	hypothetical protein	NA	NA	NA	NA
AYD33689.1\|1480677_1481121_+	hypothetical protein	NA	NA	NA	NA
AYD33690.1\|1481278_1481662_+	DUF4087 domain-containing protein	NA	NA	NA	NA
AYD33691.1\|1481763_1482132_+	hypothetical protein	NA	NA	NA	NA
AYD33692.1\|1482778_1483078_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AYD37156.1\|1483140_1483404_+	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	1.2e-06	50.0
AYD33693.1\|1483406_1484615_+	hypothetical protein	NA	NA	NA	NA
AYD33694.1\|1484607_1487979_+	type VI secretion protein VasK	NA	NA	NA	NA
AYD33695.1\|1488471_1490079_+	type VI secretion system protein TssA	NA	NA	NA	NA
AYD33696.1\|1490112_1491882_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AYD33697.1\|1491845_1492928_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AYD33698.1\|1492963_1493488_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AYD33699.1\|1493492_1495814_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.7e-14	29.0
AYD33700.1\|1495810_1496314_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	1.5e-18	40.0
AYD33701.1\|1496307_1496652_+	hypothetical protein	NA	NA	NA	NA
AYD37157.1\|1496684_1497422_+	hypothetical protein	NA	NA	NA	NA
AYD37158.1\|1497664_1498147_+	hypothetical protein	NA	NA	NA	NA
AYD33702.1\|1500030_1500915_+	glycine zipper family protein	NA	NA	NA	NA
AYD33703.1\|1501056_1501461_+	hypothetical protein	NA	NA	NA	NA
AYD33704.1\|1501968_1502367_+	hypothetical protein	NA	NA	NA	NA
AYD33705.1\|1503601_1504135_+	hypothetical protein	NA	NA	NA	NA
1505064:1505088	attL	NA	NA	NA	NA
AYD33706.1\|1505282_1506452_+\|integrase	integrase	A0A2R2Z2Y0	Escherichia_phage	1.9e-202	86.1
AYD33707.1\|1506826_1507399_+	hypothetical protein	NA	NA	NA	NA
AYD33708.1\|1507500_1507701_-	hypothetical protein	G3CFG7	Escherichia_phage	1.8e-12	60.0
AYD33709.1\|1507708_1508512_-	hypothetical protein	NA	NA	NA	NA
AYD33710.1\|1508508_1509024_-	hypothetical protein	A0A0P0ZBM8	Stx2-converting_phage	2.9e-70	76.4
AYD33711.1\|1509023_1509407_-	hypothetical protein	NA	NA	NA	NA
AYD33712.1\|1509399_1510476_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	2.8e-147	74.4
AYD33713.1\|1510603_1511389_-	hypothetical protein	A4JX52	Burkholderia_virus	2.9e-61	50.6
AYD33714.1\|1511388_1511688_-	hypothetical protein	K7PJS4	Enterobacterial_phage	1.1e-13	48.6
AYD33715.1\|1512316_1513012_-	transcriptional regulator	Q8HAA0	Salmonella_phage	2.7e-87	71.3
AYD33716.1\|1513109_1513352_+	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
AYD33717.1\|1513386_1513848_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
AYD33718.1\|1514085_1514265_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
AYD33719.1\|1514254_1515208_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	6.1e-90	69.0
AYD33720.1\|1515204_1516014_+	DNA methylase	A0A1C9II58	Salmonella_phage	2.9e-109	68.9
AYD33721.1\|1516023_1516401_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
AYD33722.1\|1516413_1517394_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.6e-136	67.5
AYD33723.1\|1517407_1517986_+	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	7.6e-51	57.2
AYD33724.1\|1518205_1518631_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	1.9e-59	83.7
AYD33725.1\|1519281_1519677_+	hypothetical protein	K7PHB9	Enterobacterial_phage	2.6e-63	98.5
AYD33726.1\|1519663_1519945_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.9e-37	80.6
AYD33727.1\|1519944_1520574_+	endolysin	G8C7W0	Escherichia_phage	1.2e-105	90.9
AYD33728.1\|1520581_1520857_+	hypothetical protein	G8C7W1	Escherichia_phage	1.9e-23	66.3
AYD33729.1\|1520807_1521002_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	2.7e-21	83.6
AYD33730.1\|1521058_1521718_-	hypothetical protein	NA	NA	NA	NA
AYD33731.1\|1521917_1522268_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	3.4e-46	73.7
AYD33732.1\|1522426_1522924_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	2.5e-63	72.0
AYD33733.1\|1522927_1524679_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	6.7e-252	72.2
AYD33734.1\|1524826_1526053_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	3.2e-208	85.3
AYD33735.1\|1526045_1526645_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	83.0
AYD33736.1\|1526654_1527893_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	6.8e-158	69.2
AYD33737.1\|1527970_1528288_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	4.8e-23	52.0
AYD33738.1\|1528296_1528635_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.3e-38	67.9
AYD33739.1\|1528631_1529081_+	hypothetical protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
AYD33740.1\|1529077_1529425_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
AYD33741.1\|1529481_1530186_+\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	9.5e-80	66.5
AYD33742.1\|1530216_1530621_+\|tail	phage tail protein	Q9MCS5	Enterobacteria_phage	1.9e-32	56.2
AYD33743.1\|1530623_1530929_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
AYD33744.1\|1531002_1531236_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
AYD33745.1\|1531297_1534684_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	4.0e-301	57.5
AYD33746.1\|1534705_1535179_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.1e-55	62.7
AYD33747.1\|1535165_1535642_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	5.3e-50	64.6
AYD33748.1\|1535654_1536035_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.0e-60	83.3
AYD33749.1\|1541792_1542887_+	hypothetical protein	A0A248XD67	Klebsiella_phage	1.4e-178	86.5
AYD33750.1\|1542921_1544022_-	acyltransferase	C6ZR20	Salmonella_phage	1.8e-05	27.2
AYD33751.1\|1544177_1544498_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.1e-22	50.9
AYD33752.1\|1544708_1545638_-	hypothetical protein	E7DYY8	Enterobacteria_phage	6.7e-134	81.4
1544596:1544620	attR	NA	NA	NA	NA
AYD33753.1\|1545927_1546689_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AYD33754.1\|1546750_1548079_-	long-chain fatty acid transporter FadL	NA	NA	NA	NA
AYD33755.1\|1548446_1548731_+	hypothetical protein	NA	NA	NA	NA
AYD33756.1\|1548890_1550201_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
AYD33757.1\|1550200_1552345_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
AYD33758.1\|1552554_1553040_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA
AYD33759.1\|1553059_1553611_-	endonuclease SmrB	NA	NA	NA	NA
AYD33760.1\|1553778_1554711_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
AYD33761.1\|1554751_1555837_+	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-89	46.6
AYD33762.1\|1556662_1557472_+	hypothetical protein	NA	NA	NA	NA
AYD33763.1\|1557471_1558020_+	elongation factor P hydroxylase	NA	NA	NA	NA
AYD37159.1\|1558051_1558333_+	hypothetical protein	NA	NA	NA	NA
AYD33764.1\|1558394_1560383_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
AYD33765.1\|1560541_1561762_+	beta-ketoacyl-[acyl-carrier-protein] synthase I	NA	NA	NA	NA
AYD33766.1\|1561971_1563147_+	arabinose transporter	NA	NA	NA	NA
AYD33767.1\|1563233_1564211_-	flagella biosynthesis regulator Flk	NA	NA	NA	NA
AYD33768.1\|1564321_1565458_+	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	1.6e-20	27.8
AYD33769.1\|1565521_1566535_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AYD33770.1\|1566534_1567347_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_4

2740423 : 2751310

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYD34826.1\|2740423_2743531_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
AYD34827.1\|2743585_2744851_+	MFS transporter	NA	NA	NA	NA
AYD34828.1\|2744881_2745970_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	1.8e-210	99.7
AYD34829.1\|2746056_2746317_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AYD34830.1\|2746614_2747475_+	class A beta-lactamase SHV-28	A0A077SL40	Escherichia_phage	1.7e-155	99.3
AYD34831.1\|2747495_2748257_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AYD34832.1\|2748517_2749420_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
AYD34833.1\|2749431_2750697_+	hypothetical protein	A0A077SLJ7	Escherichia_phage	3.9e-233	99.5
AYD34834.1\|2750689_2751310_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_5

3421070 : 3430544

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYD35427.1\|3421070_3422792_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
AYD35428.1\|3422836_3423538_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AYD35429.1\|3423891_3424110_+	translation initiation factor IF-1	NA	NA	NA	NA
AYD35430.1\|3424240_3426520_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AYD35431.1\|3426550_3426868_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AYD35432.1\|3427193_3427415_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AYD35433.1\|3427369_3427552_-	hypothetical protein	NA	NA	NA	NA
AYD35434.1\|3427491_3429432_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	5.0e-38	41.0
AYD35435.1\|3429428_3430544_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_6

3914054 : 3967732

Salmonella_phage(34.78%)

tRNA,holin,lysis,integrase,tail,head,terminase,protease

attL 3913419:3913464|attR 3954980:3955025

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3913419:3913464	attL	NA	NA	NA	NA
AYD35847.1\|3914054_3915149_-	hypothetical protein	A0A248XD67	Klebsiella_phage	1.2e-177	86.3
AYD35848.1\|3917869_3918643_-	hypothetical protein	A0A248SL44	Klebsiella_phage	3.1e-31	43.8
AYD35849.1\|3918642_3919416_-	hypothetical protein	A0A2H4J1A9	uncultured_Caudovirales_phage	5.3e-68	52.9
AYD35850.1\|3919412_3920612_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	1.3e-161	75.1
AYD35851.1\|3920611_3920965_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	1.3e-50	79.5
AYD35852.1\|3920966_3921620_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.7e-73	56.7
AYD35853.1\|3921686_3922055_-	hypothetical protein	NA	NA	NA	NA
AYD35854.1\|3922064_3922310_-	hypothetical protein	NA	NA	NA	NA
AYD35855.1\|3922306_3922867_-	hypothetical protein	NA	NA	NA	NA
AYD35856.1\|3922984_3923326_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	2.4e-20	65.8
AYD35857.1\|3923322_3924390_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	3.4e-137	68.5
AYD37264.1\|3924392_3924620_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	5.6e-18	52.0
AYD35858.1\|3924695_3925274_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	6.6e-63	66.0
AYD35859.1\|3925270_3927187_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	6.1e-198	57.9
AYD37265.1\|3927176_3927353_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	2.7e-12	67.3
AYD35860.1\|3927364_3927793_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	8.1e-42	63.3
AYD35861.1\|3927796_3928240_-	DUF3277 domain-containing protein	A0A0M5M1K6	Salmonella_phage	1.6e-61	79.3
AYD35862.1\|3928249_3929395_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	77.4
AYD35863.1\|3929398_3929839_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
AYD35864.1\|3929933_3930320_-\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	2.8e-49	79.0
AYD35865.1\|3930319_3930934_-	hypothetical protein	NA	NA	NA	NA
AYD35866.1\|3930930_3931350_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	2.6e-40	60.7
AYD35867.1\|3931318_3931600_-	hypothetical protein	NA	NA	NA	NA
AYD35868.1\|3931639_3932581_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.3e-137	77.4
AYD35869.1\|3932592_3933087_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	1.2e-49	62.1
AYD35870.1\|3933090_3934293_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	8.8e-110	55.7
AYD35871.1\|3934302_3934497_-	hypothetical protein	NA	NA	NA	NA
AYD37266.1\|3934542_3935091_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	1.0e-49	56.9
AYD35872.1\|3935146_3936598_-	hypothetical protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
AYD35873.1\|3936836_3938237_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	2.1e-187	69.2
AYD37267.1\|3938187_3938964_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	6.4e-13	67.9
AYD35874.1\|3939036_3939528_+	hypothetical protein	NA	NA	NA	NA
AYD35875.1\|3939614_3939857_-	DUF1378 domain-containing protein	NA	NA	NA	NA
AYD35876.1\|3939868_3940339_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	2.8e-43	59.1
AYD37268.1\|3940335_3940833_-	lysozyme	K7P7Q3	Enterobacteria_phage	4.8e-78	83.6
AYD35877.1\|3940810_3941080_-\|holin	holin	K7P6H9	Enterobacteria_phage	2.8e-32	78.3
AYD35878.1\|3941530_3942109_-	hypothetical protein	A0A0U2S606	Escherichia_phage	4.2e-49	56.7
AYD35879.1\|3942105_3942765_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	6.3e-102	80.0
AYD35880.1\|3942757_3943066_-	hypothetical protein	Q6V7S4	Burkholderia_virus	2.1e-23	57.6
AYD35881.1\|3943306_3943576_-	hypothetical protein	H6WRY4	Salmonella_phage	3.5e-35	80.7
AYD35882.1\|3943622_3944018_-	hypothetical protein	A0A1I9LJU8	Stx_converting_phage	8.0e-52	77.9
AYD35883.1\|3944007_3945039_-	hypothetical protein	S4TSR6	Salmonella_phage	3.3e-57	62.2
AYD35884.1\|3945035_3945263_-	hypothetical protein	NA	NA	NA	NA
AYD35885.1\|3945262_3945853_-	hypothetical protein	NA	NA	NA	NA
AYD35886.1\|3945806_3946598_-	hypothetical protein	A4JX52	Burkholderia_virus	1.1e-65	52.9
AYD35887.1\|3946590_3946812_-	hypothetical protein	NA	NA	NA	NA
AYD35888.1\|3946811_3947207_-	hypothetical protein	NA	NA	NA	NA
AYD35889.1\|3947233_3948262_-	hypothetical protein	K7PLZ7	Enterobacterial_phage	2.6e-30	51.5
AYD35890.1\|3948258_3948513_-	hypothetical protein	NA	NA	NA	NA
AYD35891.1\|3948526_3948952_-	Rha family transcriptional regulator	NA	NA	NA	NA
AYD35892.1\|3948955_3949207_-	transcriptional regulator	NA	NA	NA	NA
AYD35893.1\|3949315_3949717_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	1.8e-11	47.0
AYD35894.1\|3949861_3950266_+	hypothetical protein	NA	NA	NA	NA
AYD35895.1\|3950294_3950504_-	fumarate hydratase FumD	I6R0R9	Salmonella_phage	9.4e-28	91.3
AYD35896.1\|3950714_3950933_+	hypothetical protein	NA	NA	NA	NA
AYD35897.1\|3951566_3951860_+	hypothetical protein	NA	NA	NA	NA
AYD35898.1\|3952161_3952389_+	hypothetical protein	A0A291LBA3	Klebsiella_phage	2.1e-09	48.4
AYD35899.1\|3952385_3952610_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.5e-18	60.8
AYD35900.1\|3952606_3953356_+	hypothetical protein	A0A077KCB2	Edwardsiella_phage	6.7e-84	59.9
AYD35901.1\|3953352_3953571_+	conjugal transfer protein TraR	A0A0K2FI84	Escherichia_phage	2.6e-12	52.2
AYD35902.1\|3953801_3954962_+\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	8.8e-208	91.3
AYD35903.1\|3955395_3956262_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
3954980:3955025	attR	NA	NA	NA	NA
AYD35904.1\|3956263_3956476_+	ribosome-associated protein	NA	NA	NA	NA
AYD35905.1\|3956521_3957907_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
AYD35906.1\|3958082_3958577_+	peptidylprolyl isomerase	NA	NA	NA	NA
AYD35907.1\|3958580_3959303_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
AYD35908.1\|3959410_3959749_+	hypothetical protein	NA	NA	NA	NA
AYD35909.1\|3959745_3959913_-	MarR family transcriptional regulator	NA	NA	NA	NA
AYD35910.1\|3959845_3960355_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
AYD35911.1\|3960351_3961419_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AYD35912.1\|3961529_3962606_+\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
AYD35913.1\|3962713_3963859_-	porin	NA	NA	NA	NA
AYD35914.1\|3964040_3966455_-	ABC transporter permease	NA	NA	NA	NA
AYD37269.1\|3966451_3967138_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-31	35.7
AYD37270.1\|3967105_3967732_+\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP022925

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12835 : 25082

Salmonella_phage(33.33%)

integrase

attL 8120:8132|attR 20667:20679

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
8120:8132	attL	NA	NA	NA	NA
AYD37332.1\|12835_13930_+	hypothetical protein	A0A248XD67	Klebsiella_phage	1.2e-177	86.3
AYD37333.1\|14583_15744_-\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	8.8e-208	91.3
AYD37334.1\|15974_16193_-	conjugal transfer protein TraR	A0A0K2FI84	Escherichia_phage	2.6e-12	52.2
AYD37335.1\|16189_16939_-	hypothetical protein	A0A077KCB2	Edwardsiella_phage	6.7e-84	59.9
AYD37336.1\|16935_17160_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.5e-18	60.8
AYD37337.1\|17156_17384_-	hypothetical protein	A0A291LBA3	Klebsiella_phage	2.1e-09	48.4
AYD37338.1\|17684_17978_-	hypothetical protein	NA	NA	NA	NA
AYD37339.1\|18610_18829_-	hypothetical protein	NA	NA	NA	NA
AYD37340.1\|19037_19247_+	fumarate hydratase FumD	I6R0R9	Salmonella_phage	9.4e-28	91.3
AYD37341.1\|19319_19679_-	hypothetical protein	NA	NA	NA	NA
AYD37342.1\|19822_20224_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	1.8e-11	47.0
AYD37343.1\|20332_20584_+	transcriptional regulator	H6WRX5	Salmonella_phage	1.3e-12	47.9
AYD37344.1\|20587_21013_+	Rha family transcriptional regulator	NA	NA	NA	NA
20667:20679	attR	NA	NA	NA	NA
AYD37345.1\|21026_21281_+	hypothetical protein	NA	NA	NA	NA
AYD37346.1\|21277_22306_+	hypothetical protein	K7PLZ7	Enterobacterial_phage	2.6e-30	51.5
AYD37347.1\|22481_22727_+	hypothetical protein	NA	NA	NA	NA
AYD37348.1\|22726_22936_+	hypothetical protein	NA	NA	NA	NA
AYD37349.1\|22939_23731_+	hypothetical protein	A4JX52	Burkholderia_virus	1.1e-65	52.9
AYD37350.1\|23922_24273_+	hypothetical protein	NA	NA	NA	NA
AYD37351.1\|24272_24500_+	hypothetical protein	NA	NA	NA	NA
AYD37352.1\|24496_25082_+	hypothetical protein	S4TSR6	Salmonella_phage	3.2e-49	66.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP022926

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5122 : 61772

Escherichia_phage(18.18%)

holin,transposase,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYD37360.1\|5122_6838_-\|integrase	integrase	NA	NA	NA	NA
AYD37361.1\|6947_9977_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
AYD37362.1\|10083_11109_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
AYD37363.1\|11105_11885_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
AYD37364.1\|11881_12121_+	hypothetical protein	NA	NA	NA	NA
AYD37365.1\|12172_13054_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
AYD37366.1\|13303_14623_-\|transposase	IS1182 family transposase ISKpn6	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
AYD37367.1\|14899_16084_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
AYD37368.1\|16587_16947_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.6e-19	62.0
AYD37369.1\|18112_18733_-	serine recombinase	A0A219Y912	Aeromonas_phage	2.0e-09	31.5
AYD37370.1\|18821_21719_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-181	37.7
AYD37371.1\|21791_22496_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYD37372.1\|24239_25100_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AYD37373.1\|25597_25906_+	hypothetical protein	NA	NA	NA	NA
AYD37374.1\|25800_26364_-	SAM-dependent methyltransferase	M4M9L8	Vibrio_phage	1.7e-18	42.0
AYD37375.1\|26411_27767_-	DUF3560 domain-containing protein	NA	NA	NA	NA
AYD37376.1\|27818_28049_-	hypothetical protein	NA	NA	NA	NA
AYD37377.1\|28140_28368_-	hypothetical protein	NA	NA	NA	NA
AYD37378.1\|29094_29412_-	hypothetical protein	NA	NA	NA	NA
AYD37596.1\|29446_29701_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	8.8e-12	50.0
AYD37379.1\|29937_30363_-	antirestriction protein	NA	NA	NA	NA
AYD37380.1\|30500_30713_-	hypothetical protein	NA	NA	NA	NA
AYD37597.1\|30882_31113_-	hypothetical protein	NA	NA	NA	NA
AYD37381.1\|31346_32855_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.1e-24	32.2
AYD37382.1\|32854_33106_-	hypothetical protein	NA	NA	NA	NA
AYD37383.1\|33259_33685_+	peptidase	A0A1W6JNS2	Morganella_phage	2.9e-31	50.4
AYD37384.1\|33684_34956_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.5e-155	64.0
AYD37385.1\|35033_35285_+	plasmid stabilization protein	NA	NA	NA	NA
AYD37386.1\|35529_37482_-	DUF262 domain-containing protein	NA	NA	NA	NA
AYD37387.1\|37478_38759_-	DUF262 domain-containing protein	NA	NA	NA	NA
AYD37388.1\|43444_44416_-	plasmid-partitioning protein	I3WF22	Macacine_betaherpesvirus	9.2e-150	86.3
AYD37389.1\|44415_45582_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	4.0e-224	97.4
AYD37390.1\|46333_47344_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	3.0e-87	54.3
AYD37391.1\|48061_48802_-	recombinase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
AYD37392.1\|49945_50893_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	2.3e-12	30.6
AYD37393.1\|50919_51231_-	EAL domain-containing protein	NA	NA	NA	NA
AYD37394.1\|51295_52219_+\|transposase	IS5/IS1182 family transposase	Q9MCT5	Escherichia_phage	7.1e-176	98.7
AYD37395.1\|52891_53149_-	hypothetical protein	NA	NA	NA	NA
AYD37396.1\|53750_55205_+	diguanylate cyclase	NA	NA	NA	NA
AYD37397.1\|56187_57465_-	DUF2254 domain-containing protein	NA	NA	NA	NA
AYD37398.1\|57527_59531_-\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
AYD37598.1\|60564_61772_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2

DBSCAN-SWA_2

100949 : 178159

Escherichia_phage(28.57%)

transposase,protease,integrase

attL 98630:98644|attR 176823:176837

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
98630:98644	attL	NA	NA	NA	NA
AYD37601.1\|100949_102296_+\|transposase	transposase	NA	NA	NA	NA
AYD37438.1\|102344_102740_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYD37439.1\|104229_105192_-\|protease	Zn-dependent protease	NA	NA	NA	NA
AYD37440.1\|105178_105928_-	diguanylate cyclase	NA	NA	NA	NA
AYD37441.1\|106165_106363_-	hypothetical protein	NA	NA	NA	NA
AYD37442.1\|106362_109158_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	5.2e-129	41.0
AYD37443.1\|109281_109851_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
AYD37602.1\|109885_110167_-	DNA-binding protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
AYD37444.1\|112102_113110_-	formamidase	NA	NA	NA	NA
AYD37445.1\|113145_113835_-	urea ABC transporter ATP-binding subunit UrtE	G9BWD6	Planktothrix_phage	8.5e-17	29.6
AYD37446.1\|113845_114595_-	urea ABC transporter ATP-binding protein UrtD	A0A2H4PQG7	Staphylococcus_phage	2.4e-17	26.4
AYD37447.1\|114591_115707_-	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
AYD37448.1\|115716_116643_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AYD37603.1\|116699_117890_-	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
AYD37449.1\|118194_121575_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.7e-41	30.3
AYD37450.1\|121537_122458_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.0e-13	34.1
AYD37451.1\|123454_124423_-\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	2.0e-173	91.6
AYD37452.1\|124696_125701_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AYD37453.1\|125882_126059_-\|integrase	integrase	T1S9J3	Salmonella_phage	1.0e-06	68.6
AYD37454.1\|126388_127204_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
AYD37455.1\|127264_128068_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AYD37456.1\|128067_128904_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AYD37457.1\|128985_129690_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYD37458.1\|130660_131365_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYD37459.1\|131657_131972_-\|transposase	transposase	NA	NA	NA	NA
AYD37460.1\|131910_132924_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AYD37461.1\|133070_133553_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	6.6e-16	28.9
AYD37462.1\|133773_134040_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
AYD37463.1\|134182_134947_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AYD37464.1\|134988_135201_+	resolvase	NA	NA	NA	NA
AYD37465.1\|135213_136422_+	restriction endonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
AYD37466.1\|136455_137889_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
AYD37467.1\|138207_138912_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYD37468.1\|138981_141774_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.9
AYD37469.1\|141790_142123_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
AYD37470.1\|142169_143045_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
AYD37471.1\|143427_144132_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYD37472.1\|145325_145868_-	tunicamycin resistance protein	NA	NA	NA	NA
AYD37473.1\|145880_146741_-	aminoglycoside N-acetyltransferase AAC(3)-IIa	NA	NA	NA	NA
AYD37474.1\|146847_147552_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYD37604.1\|147695_148250_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
AYD37605.1\|148380_149211_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
AYD37475.1\|149842_150547_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYD37606.1\|152168_152411_+	relaxase	NA	NA	NA	NA
AYD37476.1\|152442_153120_-	TetR family transcriptional regulator	NA	NA	NA	NA
AYD37477.1\|153198_154398_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AYD37478.1\|154429_155314_-	EamA family transporter	NA	NA	NA	NA
AYD37607.1\|155451_155844_-	cysteine hydrolase	NA	NA	NA	NA
AYD37479.1\|156620_157226_-	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	9.4e-20	35.3
AYD37480.1\|157320_160218_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
AYD37481.1\|162625_163270_+	quinolone resistance pentapeptide repeat protein QnrB1	NA	NA	NA	NA
AYD37482.1\|164069_164774_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYD37483.1\|164820_166125_-\|integrase	integrase	NA	NA	NA	NA
AYD37484.1\|166163_166871_-	EAL domain-containing protein	NA	NA	NA	NA
AYD37485.1\|166867_167104_-	mercury resistance protein	NA	NA	NA	NA
AYD37486.1\|167100_167463_-	transcriptional regulator	NA	NA	NA	NA
AYD37487.1\|167480_169175_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
AYD37608.1\|169226_169649_-	mercury transport protein MerC	NA	NA	NA	NA
AYD37609.1\|169684_169810_-	mercury transporter	NA	NA	NA	NA
AYD37488.1\|170541_171252_-	AAA family ATPase	NA	NA	NA	NA
AYD37489.1\|171325_171742_-	PIN domain nuclease	NA	NA	NA	NA
AYD37490.1\|171738_171969_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AYD37491.1\|171952_172387_+	hypothetical protein	NA	NA	NA	NA
AYD37610.1\|172621_172828_+	hypothetical protein	NA	NA	NA	NA
AYD37492.1\|172873_173182_+	hypothetical protein	NA	NA	NA	NA
AYD37493.1\|173209_173539_+	hypothetical protein	NA	NA	NA	NA
AYD37494.1\|173606_173963_+	hypothetical protein	NA	NA	NA	NA
AYD37495.1\|173969_174302_+	hypothetical protein	NA	NA	NA	NA
AYD37496.1\|174301_175084_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.6e-51	90.2
AYD37497.1\|175938_176133_-	hypothetical protein	NA	NA	NA	NA
AYD37498.1\|176297_176771_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
AYD37499.1\|176890_178159_-\|transposase	ISL3 family transposase ISKpn25	Q6V7R1	Burkholderia_virus	5.2e-60	34.7
176823:176837	attR	NA	NA	NA	NA

DBSCAN-SWA_3

182734 : 194826

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYD37502.1\|182734_184762_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-26	26.6
AYD37503.1\|184873_185089_-	hypothetical protein	NA	NA	NA	NA
AYD37504.1\|185313_185646_-	hypothetical protein	NA	NA	NA	NA
AYD37505.1\|185665_185851_-	hypothetical protein	NA	NA	NA	NA
AYD37506.1\|186022_186997_-	chromosome partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	1.4e-105	62.3
AYD37507.1\|186993_188199_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	7.3e-205	89.0
AYD37508.1\|188520_189417_-	replication initiation protein	Q71TL8	Escherichia_phage	3.3e-69	53.8
AYD37509.1\|189817_191089_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.6e-154	63.7
AYD37510.1\|191088_191520_-	peptidase	A0A1W6JNS2	Morganella_phage	1.0e-28	52.5
AYD37511.1\|191751_192723_+	StbA family protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
AYD37512.1\|192725_193397_+	Mediator of plasmid stability	NA	NA	NA	NA
AYD37513.1\|193457_193688_+	hypothetical protein	NA	NA	NA	NA
AYD37514.1\|194124_194826_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP022924

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP022925

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP022926

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection