CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023485	Vibrio parahaemolyticus strain FORC_071 chromosome 1, complete sequence	0 crisprs	cas3,DinG,csa3,csx1,DEDDh	0	0	3	0
CP023486	Vibrio parahaemolyticus strain FORC_071 chromosome 2, complete sequence	2 crisprs	DEDDh,WYL,csa3,cas3,cas5f,cas7f,cas6f	0	1	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

678278 : 684980

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYF18978.1\|678278_679418_+	Glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7
AYF18979.1\|679450_680686_+	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	2.1e-98	47.9
AYF18980.1\|680813_681263_+	Ribonucleotide reductase transcriptional regulator NrdR	NA	NA	NA	NA
AYF18981.1\|681270_682395_+	Diaminohydroxyphosphoribosylaminopyrimidine deaminase	A0A1V0SE20	Indivirus	4.0e-48	36.0
AYF18982.1\|682407_683061_+	Riboflavin synthase eubacterial, eukaryotic	A0A2H4PQS5	Staphylococcus_phage	1.6e-33	37.5
AYF18983.1\|683230_684340_+	3,4-dihydroxy-2-butanone 4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.5e-63	39.6
AYF18984.1\|684509_684980_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3

DBSCAN-SWA_2

1425747 : 1436521

Vibrio_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYF19636.1\|1425747_1425936_-	hypothetical protein	F6LQB8	Bdellovibrio_phage	2.3e-09	54.7
AYF19637.1\|1426033_1426258_-	hypothetical protein	NA	NA	NA	NA
AYF19638.1\|1426260_1426788_-	hypothetical protein	NA	NA	NA	NA
AYF19639.1\|1426780_1429924_-	hypothetical protein	I3PUZ3	Vibrio_phage	8.7e-24	33.6
AYF19640.1\|1429936_1430155_-	hypothetical protein	NA	NA	NA	NA
AYF19641.1\|1430827_1431460_-	repressor	A0A1V0E8B5	Vibrio_phage	4.0e-61	56.1
AYF19642.1\|1431604_1431826_+	hypothetical protein	A0A1P8DTF8	Proteus_phage	2.8e-06	40.6
AYF19643.1\|1431845_1432310_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.4e-18	48.8
AYF19644.1\|1432306_1432525_+	hypothetical protein	NA	NA	NA	NA
AYF19645.1\|1432590_1433544_+	hypothetical protein	A0A1V0E831	Vibrio_phage	6.4e-39	36.0
AYF19646.1\|1433540_1433921_+	hypothetical protein	NA	NA	NA	NA
AYF19647.1\|1433913_1434564_+	hypothetical protein	K7PKS6	Enterobacteria_phage	1.4e-21	36.5
AYF19648.1\|1434560_1434743_+	hypothetical protein	NA	NA	NA	NA
AYF19649.1\|1434732_1435134_+	hypothetical protein	A0A2I7RSK9	Vibrio_phage	1.3e-22	49.1
AYF19650.1\|1435170_1435578_+	hypothetical protein	NA	NA	NA	NA
AYF19651.1\|1435786_1436521_+	hypothetical protein	C7BGG4	Burkholderia_phage	1.8e-09	36.4

DBSCAN-SWA_3

2709813 : 2726993

uncultured_Mediterranean_phage(18.18%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYF20830.1\|2709813_2712396_-\|tRNA	Alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.9
AYF20831.1\|2712538_2713006_-	Regulatory protein RecX	NA	NA	NA	NA
AYF20832.1\|2713129_2714173_-	RecA protein	A0A2D1GPX2	Mycobacterium_phage	8.1e-112	60.7
AYF20833.1\|2714373_2714856_-	C-terminal domain of CinA type S	B5TK85	Pseudomonas_phage	1.1e-26	48.1
AYF20834.1\|2714940_2717502_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	9.8e-34	23.7
AYF20835.1\|2717581_2718571_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
AYF20836.1\|2718651_2719575_-	Lipoprotein NlpD	D7RWE0	Brochothrix_phage	4.1e-06	35.2
AYF20837.1\|2719589_2720216_-	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-35	52.1
AYF20838.1\|2720215_2720992_-	5-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.0e-66	52.4
AYF20839.1\|2720991_2722035_-\|tRNA	tRNA pseudouridine 13 synthase	NA	NA	NA	NA
AYF20840.1\|2722081_2722558_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AYF20841.1\|2722575_2723280_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	5.9e-05	23.6
AYF20842.1\|2723281_2723563_-	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA
AYF20843.1\|2723972_2725274_-	Enolase	A0A1X9I5Z8	Streptococcus_phage	4.2e-134	59.2
AYF20844.1\|2725352_2726993_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.2e-155	52.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP023486

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CRISPR-Cas detection and classification

Crispr_ID: CP023486_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023486_1

67592-67689

Orphan

Consensus_repeat	Method
TATTTTTAAAATGCCTTTTCAAAAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP023486_1

>merge|CP023486|1|67592-67689|CRISPRCasFinder
TATTTTTAAAATGCCTTTTCAAAAATTTGAAACCGCGCAATTAAAGAATCCAGAAAAACAAGATCGCAATCAATATTTTTAAAACGCCTTTTCAAAAA

>CP023486|1|1|67592-67689|CRISPRCasFinder
TATTTTTAAAATGCCTTTTCAAAAA	TTTGAAACCGCGCAATTAAAGAATCCAGAAAAACAAGATCGCAATCAA
TATTTTTAAAACGCCTTTTCAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP023486.1\|AYF21410.1\|67719_68550_+\|2-deoxy-D-gluconate-3-dehydrogenase	unknown	unknown	gnl\|CDD\|181605
CP023486.1\|AYF21411.1\|68568_69093_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378474
CP023486.1\|AYF21414.1\|70174_71086_+\|Xylanase	unknown	unknown	gnl\|CDD\|223730
CP023486.1\|AYF21417.1\|72934_74554_-\|Transporter-protein	unknown	unknown	gnl\|CDD\|271371
CP023486.1\|AYF21408.1\|64798_66667_-\|putative-signal-transduction-protein	unknown	unknown	gnl\|CDD\|225457
CP023486.1\|AYF21419.1\|75496_77725_+\|Exopolygalacturonate-lyase	unknown	unknown	unknown
CP023486.1\|AYF21400.1\|57573_57975_-\|hypothetical-protein	unknown	unknown	unknown
CP023486.1\|AYF21409.1\|66750_67533_-\|Transcriptional-regulator-KdgR,-KDG-operon-repressor	unknown	unknown	gnl\|CDD\|185046
CP023486.1\|AYF21413.1\|69461_70097_+\|putative-4-deoxy-L-threo-5-hexosulose-uronate-ketol-isomerase	unknown	unknown	gnl\|CDD\|181746
CP023486.1\|AYF21403.1\|59985_60825_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
CP023486.1\|AYF21412.1\|69100_69421_+\|Pectin-degradation-protein-KdgF	unknown	unknown	gnl\|CDD\|380366
CP023486.1\|AYF21406.1\|63215_64085_+\|Transcriptional-regulator,-LysR-family,-in-formaldehyde-detoxification-operon	unknown	unknown	gnl\|CDD\|176159
CP023486.1\|AYF21418.1\|74803_75481_+\|Oligogalacturonate-specific-porin-protein-KdgM	unknown	unknown	gnl\|CDD\|368776
CP023486.1\|AYF21407.1\|64085_64796_-\|DNA-polymerase-III-epsilon-subunit	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236392
CP023486.1\|AYF21402.1\|59078_59543_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226429
CP023486.1\|AYF21405.1\|62328_63135_+\|N-hydroxyarylamine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|366312
CP023486.1\|AYF21415.1\|71184_72114_+\|2-dehydro-3-deoxygluconate-kinase	unknown	unknown	gnl\|CDD\|238571
CP023486.1\|AYF21401.1\|57987_59079_-\|Transcriptional-regulator-CdgA	unknown	unknown	gnl\|CDD\|143635
CP023486.1\|AYF21404.1\|60886_62035_-\|S-(hydroxymethyl)glutathione-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
CP023486.1\|AYF21416.1\|72125_72749_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235577

Protein	Function_ID	Function_description	E-value
CP023486.1\|AYF21410.1\|67719_68550_+\|2-deoxy-D-gluconate-3-dehydrogenase	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	0
CP023486.1\|AYF21411.1\|68568_69093_+\|hypothetical-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	9.00507e-50
CP023486.1\|AYF21414.1\|70174_71086_+\|Xylanase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	5.26721e-18
CP023486.1\|AYF21417.1\|72934_74554_-\|Transporter-protein	gnl\|CDD\|271371	cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	7.3198e-98
CP023486.1\|AYF21408.1\|64798_66667_-\|putative-signal-transduction-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	1.69366e-138
CP023486.1\|AYF21413.1\|69461_70097_+\|putative-4-deoxy-L-threo-5-hexosulose-uronate-ketol-isomerase	gnl\|CDD\|181746	PRK09273, PRK09273, hypothetical protein; Provisional.	2.15977e-144
CP023486.1\|AYF21409.1\|66750_67533_-\|Transcriptional-regulator-KdgR,-KDG-operon-repressor	gnl\|CDD\|185046	PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR; Provisional.	0
CP023486.1\|AYF21403.1\|59985_60825_-\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	5.2905e-143
CP023486.1\|AYF21412.1\|69100_69421_+\|Pectin-degradation-protein-KdgF	gnl\|CDD\|380366	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain. This family includes bacterial and archaeal pectin degradation protein KdgF that catalyzes the linearization of unsaturated uronates from both pectin and alginate, which are polysaccharides found in the cell walls of plants and brown algae, respectively, and represent an important source of carbon. These polysaccharides, mostly consisting of chains of uronates, can be metabolized by bacteria through a pathway of enzymatic steps to the key metabolite 2-keto-3-deoxygluconate (KDG). Pectin degradation is used by many plant-pathogenic bacteria during infection, and also, pectin and alginate can both represent abundant sources of carbohydrate for the production of biofuels. These proteins belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.13072e-54
CP023486.1\|AYF21406.1\|63215_64085_+\|Transcriptional-regulator,-LysR-family,-in-formaldehyde-detoxification-operon	gnl\|CDD\|176159	cd08470, PBP2_CrgA_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 1. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.14139e-108
CP023486.1\|AYF21418.1\|74803_75481_+\|Oligogalacturonate-specific-porin-protein-KdgM	gnl\|CDD\|368776	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.	3.08357e-24
CP023486.1\|AYF21407.1\|64085_64796_-\|DNA-polymerase-III-epsilon-subunit	gnl\|CDD\|236392	PRK09146, PRK09146, DNA polymerase III subunit epsilon; Validated.	3.33794e-39
CP023486.1\|AYF21402.1\|59078_59543_-\|hypothetical-protein	gnl\|CDD\|226429	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown].	5.12954e-40
CP023486.1\|AYF21405.1\|62328_63135_+\|N-hydroxyarylamine-O-acetyltransferase	gnl\|CDD\|366312	pfam00797, Acetyltransf_2, N-acetyltransferase. Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (M. tuberculosis, M. smegmatis etc) to man. It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat Tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid.	2.92605e-96
CP023486.1\|AYF21415.1\|71184_72114_+\|2-dehydro-3-deoxygluconate-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	5.30564e-103
CP023486.1\|AYF21401.1\|57987_59079_-\|Transcriptional-regulator-CdgA	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.06677e-44
CP023486.1\|AYF21404.1\|60886_62035_-\|S-(hydroxymethyl)glutathione-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
CP023486.1\|AYF21416.1\|72125_72749_+\|hypothetical-protein	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	4.28455e-121

>CP023486.1|AYF21409.1|66750_67533_-|Transcriptional-regulator-KdgR,-KDG-operon-repressor
MEKSTQPEAVSSVLKVFHILQALGEQKAIGVSELSQRLMMSKATTYRFLQTMKSLGYVSQEGEADKYSLTLKLFELGAKSLEYVDLIELADKEMRHISEQTNEALHLGALDENAIIYIHKIDSGYNLRMQSRIGRRNPLYSTAIGKVLLSERDESFVRDVLSDVEFIKHTEKTLENTDQVLEELAKVRDFHYAEDNEEQEPGLRCIAAPIYDRFGQIIAGLSISFPTIRFDEERMEYYVGLLHQAGKNISEQLGYHDYPA
>CP023486.1|AYF21408.1|64798_66667_-|putative-signal-transduction-protein
MGTSVTPNIFDFLIKIDPFDKLPEPVVESIANSVKVKYLVRGETIGFSALCDQRYLYIIRTGAIEQRTPNGELRARLGQDDQFGFTFLDPLENAEDGYQAESIEDSLLYLIPHSELKLVSEEHPEFADYFAAQANVRLSSAVKYVCRKEEKGLFFRTVGEIASENIAIVDVNDSIRSVAQTMCGKQRSSCAVVMKEGEIIGLVTDRDMTKSVVAQDMDTNQPIADVMTPNPVLIEDDAKVIQAISLMLQYNIRCLPVVHGKQVKGLLTTTHLVHNHRTQSLFLIEKIKYASSLNALAALKEERQTIFQALVESGVSAEIQGRVMSMIMDAFTRRIIQLNEELLGPPPCDYAWLVAGSHARNEVHMLSDQDSAIVLSDDATEEHKLYFTHLAMRVCNGLAACGYPLCDGKYMAASPKWCQPIRRWKEYYQKWVASPEYNKLLSISVFLEVRAIHGNREFVDQIQQHLHDCIQKSPSFIPALVRDAIDTQPPLGIFNNLVLEKGGENSNTLNIKKYALNLIIDLARIFSLAAGGSLTGTEERFRYAAQHGTLSKDSVENIIGAYRFITQVRFRHQLNAILAGTTPDNHIAPDDFSSFERKHLKDAFKIISELQDVAKLKFVKGA
>CP023486.1|AYF21407.1|64085_64796_-|DNA-polymerase-III-epsilon-subunit
MIKRWFKRWETPLSPEQKRQAIHVIDDWPMVLKDYLQQPFVDDSTTLKDLSFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAQINGLTPQDLAKGLPLDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQIEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFLVQSKKLTALPDVTLRQLMR
>CP023486.1|AYF21406.1|63215_64085_+|Transcriptional-regulator,-LysR-family,-in-formaldehyde-detoxification-operon
MANWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAGQLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVDLDLVLTNQKLDLIEQGVDVAIRLGRLQDSSMIAKRLSSRQTYVCASPMYLERFGEPHTLSELGRHQCLVGSVDYWHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLVQLPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFLAQELA
>CP023486.1|AYF21405.1|62328_63135_+|N-hydroxyarylamine-O-acetyltransferase
MNKTDLNAYLTKLGLPSELPADLESLHKIHVAQHRCLPFENFDISLQRGISVEIEDIIQKTVYHSRGGYCFELNGLMLDVLNTLGFEARSLLGRVHVMGTPTGRSHQITLVTLDEQAWIVDVGFGSNTPRAPLPFILNQVIQTDLQTFRFVEDAQFGYFLQVLSTDGTDTWNNLYSFDLEFVFAGDIACGNFFTSTSPNSRFTSARVAAKATESGLVTLLNYTLKYTSQGEQTELELEPGQAYLDALKEYFGIELDAQYGELRPLPDA
>CP023486.1|AYF21404.1|60886_62035_-|S-(hydroxymethyl)glutathione-dehydrogenase
MTLEIKPGQTHIKSKAMVAWAAGEPLKMEEVDVQLPKAGEVLVRIVATGVCHTDAFTLSGDDPEGIFPSILGHEGGGIVEMVGEGVTSVEVGDHVIPLYTAECGECKFCKSGKTNLCQAVRETQGKGLMPDGTSRFSINGETIFHYMGCSTFSEYTVLPEISLAKVNKQAPLEEVCLLGCGVTTGMGAVLNTAKVEKGDTVAIFGLGGIGLSAIIGARMAGASRIIGIDINESKFDLAKQLGATDVINPQKFDKPIQEVIVEMTDGGVDYSFECIGNVNVMRQALECCHKGWGESVIIGVAGAGQEISTRPFQLVTGRVWRGSAFGGVKGRSELPEIVNRYMAGEFGLQEFITHTMGLEDVNKAFDLMHEGKSIRTVIHMDK
>CP023486.1|AYF21403.1|59985_60825_-|S-formylglutathione-hydrolase
MTIENVSQTKVFGGWHKQYTHDSKALNCTMRFAIFLPPNATKSNPVPALYWLSGLTCTDENFMQKAGAFRMAAELGIAIIAPDTSPRGEGVADDASYDLGQGAGFYLNATQAPWSLHYHMYDYVTQELPAIIEANFPVSDVKSISGHSMGGHGALTIGLKNPTLYRSISAFSPISNPMQCPWGQKAFTAYLGTDIESWKQYDASELLKKEKSPLPILVDQGDADGFLSEQLKPEVLLAAAKQHGSELNLRMQSGYDHSYYFISSFIDNHLNFHAKYLFA
>CP023486.1|AYF21402.1|59078_59543_-|hypothetical-protein
MMKKIVSLSLLLFAPFLSANSITFSSPQQPSVTLKLEELQSLPTTSYTTDLPWIQQSSEFLGVKLSTLLTHVYGSIPEQVDIGSLNNYHSTLSRKDIVRYQPILAYQQDHHYIKVRNKGPYWVIYPLSQYPELDHNEYHAQMVWQVNEMKIKQK
>CP023486.1|AYF21401.1|57987_59079_-|Transcriptional-regulator-CdgA
MKLSEAYPIKQKNYSTTSKMLLLVFATSLLLANVILLQQTRVLAQSFTDEQKQATWFLFQLSKELSELVSEARRLDENVLKIEGAELQYELAWSRFDLLINSKDVYTFFSRNHIQQYFLQLFNEFKELEPLLVEAKTGDSQAAAQFYRATQTLYLNLVEFVNQNFRLTSQVYETQKDESQRLMKAQYMLFATFVLSILSLTYFFYRESHFHRKLALSDPLTGLGNRNALFVTLRNNTRNRTAFSLCLLDLNGFKNVNDTYGHQAGDTVLCEIAKRLKDMNIDSFSTYRMGGDEFAVVIESSDVDAEEAKKHIHSVFDTPVLNANNVSSLSTSIGVAHYPSDSDNVDFLISIADKRMYKMKFQR
>CP023486.1|AYF21400.1|57573_57975_-|hypothetical-protein
MRKFMQVLLLLAVIAAGVLAWVFIPSHETIGQKTLEQALNDDYSLVGHRIYSTDPDAGNRFGYFVLATGQSIEEQEPFLVTSDQFIRMEQTGDNTLSVTVNGRIYQYHNDLWVPKPDGKLQHFLVSATTNYVR
>CP023486.1|AYF21410.1|67719_68550_+|2-deoxy-D-gluconate-3-dehydrogenase
MNAYKVTWPRRQITTLPTIEENDMILDSFNLEGKVAIVTGCDTGLGQGMALGLAKAGCDIVGVNISEPTETIEKVEAEGRKFVDIRANLMKLDDIPTIVDRAVTELGRIDILVNNAGIIRRNDAIEFSEQDWDDVMNINVKSVFFMSQAVAKQFIAQGEGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWASHGINVNAIAPGYMATNNTASLRADEQRNKEIVDRIPAARWGTPEDLAGPCVFLASKAADYINGYTIAVDGGWLAR
>CP023486.1|AYF21411.1|68568_69093_+|hypothetical-protein
MVDTTILAQALGFISFGLGFSVFYQKNDRHLKILMLIFNLNHLLHFLLLGSMVSALSALLSALRTTTAIFVSSKRVAAVFIVISLVSGFWVAEQWRDLWPIIGTVIGTYSVFCLSGIRMRIGFLLGASCWLTNNILVGSIGGTLLEMTVIVMNLLTIYRLHRQQSESMINQSSY
>CP023486.1|AYF21412.1|69100_69421_+|Pectin-degradation-protein-KdgF
MFVFNQDIPMEDLGEGISRKVLAHSDNMMSVEVHFEEGAIGAMHSHPHEQLTYVLSGEFEFTIGDEKKIVKTGDTMYKEPNIEHGCVCLKAGVLIDTFTPMRKDFV
>CP023486.1|AYF21413.1|69461_70097_+|putative-4-deoxy-L-threo-5-hexosulose-uronate-ketol-isomerase
MKIALMMENSQAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGTGQGALMSCNLHPGVVCGYCLEPSDAFLFNQINNGNAISLAFAKGFGWAGELNVRYIFEKAFTGKRGEGYPIERAAPQQANAAILNNVKSAVAKDVVEGLRAIDQELVKTAVGSTQFQECFFAHCQVPEIAEYVKSLLD
>CP023486.1|AYF21414.1|70174_71086_+|Xylanase
MHVAPITSLQTWFPEHLVLPLWSEPQISSHLVQSYQERNPNELLPDRAVFEITHPEIVVFEPEQSNGMGILLMPGGGYQRVSVDKEGADSARVLNQAGFTVFVMTYRMPNEGHEFGSWTPLADAQRAMRLVRQLPLASHLSSIGVLGFSAGGHVAASLATSHALDIYSLQDEADRVSAKPDFCALMYPVISMNTDIAHMGSRAELLANLERESDLLRFSLEKQVTSDMPPCFLLHASDDTAVSVENSLVFWQALRQHEISTEMHLFEQGKHGFGIRDAQGLPVAAWPQLLSAWLQNLAEKARR
>CP023486.1|AYF21415.1|71184_72114_+|2-dehydro-3-deoxygluconate-kinase
MNPISRVAIIGECMVELKKHDGVLQQGFGGDTLNTAVYLSRLTKQHGVETSYVTGLGHDPFSREMLTAWREEGINTDMVYLSEDKLPGIYAIETAEDGERSFFYWRNDAAAKYWLRERALLSLVKDLCQHQMIYLSGISLAIISDDCRQMLIELLTMCRKEGVKIAFDNNFRPKLWPNIEQARDFYSKILSVTDMAFLTFDDEVMLWGDKHEDEAISRTKNFGVKEIVVKRGADDCFVVTQDQQHTVAALKVDAVVDTTAAGDSFSAGYLAKRILGGDVAESALAGHKVAGTVIQHRGAIIPSQAMPTI
>CP023486.1|AYF21416.1|72125_72749_+|hypothetical-protein
MKDLNQQLSEIKVVPVIAIKDAGKAVKLAQVLIENGLPCAEVTFRTEDAALAIKNMREAYPEMLIGAGTVLTSAQVDEAIDAGVDFIVSPGFNPTTVKYCQQRNVTIVPGVNNPSLVEQAMEMGLRTLKFFPAEPSGGVAMLKALSAVYPVKFMPTGGVSPSNVKDYLSISSVLACGGTWMVPGDLIDNEQWDELAKLVREVAGIIE
>CP023486.1|AYF21417.1|72934_74554_-|Transporter-protein
MWWMAGATAFMTQFSAWTFTGAAAKAYEDGISVMFIFWGNALGFFVAAAFFARRYRRLRVETAMEVIRVRFGHTSEQLFTWLSFPLTLIACAIWMNGLASFFSAVFAIEMSATILAMGVVVTLIAVSGGAWTVSVTNVIQLVLLIAITLVIGYTALQRFDSPSEVFAYTTPIYGEQIRMPSLFVMWAIAMLLQQTMSNNHTLSCYRFLTTANDKDATKAAFVAGVLFVFAPVLWFMPAWFVAAQNIDLLAIYPALEQSANNAAYLYYIQHYMPQGLLGLVMVALVAATIAPLSSAHNRNAGIVVKSLYQVWFNPNATSCQQLMVGKIATIVSGVLATVTALLLASVESYSLFDMMIVFAAFIQMPINIPSLLALVSLKTPNWSGCATVMVGCAVSLFMMFIFDVQWLSSSPLTPRESKDLSVVATLAVHLLVTGGFFLSTRVFYVKESPSIQQSRTALAIQLATPISDEELSPINHKQGLYVGSITALAGMLLILAGVVLAGSSQSIFVAIGCIVLLFSLFLLQPTQHSKRAWQKQKTK
>CP023486.1|AYF21418.1|74803_75481_+|Oligogalacturonate-specific-porin-protein-KdgM
MKVRYLTSALLLAMTSGLAAAASVDIRHEYVPDRDGDEHRDRIYVSHRFDNQIGFSVEAKWNYKDGHMGNAGHETGVSYRWKATDNFSLTPGINIDASPSGASVFKYNLTGAYKINDEWDVAARIRHGYKNTDDSRYNQLNLYANRKFEWGKLGVEAEYKDIHGGEGGWKDKGHDQLIDFKGEYTKLESGVIPFFAIAAITHKGDGSEFKDEYVPRFRVGLKYNF
>CP023486.1|AYF21419.1|75496_77725_+|Exopolygalacturonate-lyase
MKKHTLALCLAAILAPAAHAAEIKVEDLTWKAITFGQSTDMNFGSTILPEKVGVNQVTVNGEAVAAGKLASTFTIESRGGKLANSHEGLTFYYTELPTDVNFTLSADVVLEQLGPETGATPNRQEGAGLMVRDILGAERLVPQPEGHEEFPSASNMVMNLMRSHTRTNDGMTNINASFREGVYQPWGTPGNRLSRVDYVEGVPYGTAETYRMTLTRTNDGFKVSYRNGEKFVEQAVKGANANIVEMQNSDSQYVGFFASRNAKMTVSNVDLQLAAADTVDAPKYAAKQGELVFQIASSPRSATNEYPVQARANYSGEFEVLHNGKVVAKQTVTAGELFSQWLTLDSGANQMEVRFTAIDGPNKETQAHRYSVDVVSLPDPMTLYVAPNGSDKGNGSQAQPLDFATAVELLPAGGTIILKDGDYQGMEIPLTASGSADKLKHLRAEGDNVRFVSELRHEANYWHYQGIEVAGAQFIVHGSHNTFEKMVTHGAPDTGFVITSPENIGRALWASYNQVIESESYNNMDPSQINADGFAAKMRIGDGNTFIRCLSHHNIDDGWDLFNKVEDGANGAVTILDSISFSNGRTLDVANKGGTIGNGFKLGGEGIPVPHVVKNSLSFNNNMDGFTDNFNPGALVLSDNVSIDNKRFNYLFRKSPYSGEIEQGTFTNNRSYRFHVSSKYDDVINSAKSIGNALVENGTTYTSDGKAVDSKTLAPLKQVSVIDTQQAIPGKQEAMQLKQLIH

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Crispr_ID: CP023486_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023486_2

1443438-1443584

Unclear

Consensus_repeat	Method
GTGAACTGCCGAATAGGTAGCTGATAAT	CRISPRCasFinder

2 spacers

cas6f,cas7f,cas5f

The CRISPR arrays of CP023486_2

>merge|CP023486|2|1443438-1443584|CRISPRCasFinder
GTGAACTGCCGAATAGGTAGCTGATAATGAGATACCACAGGCTCAAGCAGATGCTAACAGGTGAACTGCCGAATAGGTAGCTGATAATAGTCGGTCAACTGAGAATACGTTGTTGCCAAGTGAACTGCCGCATAGGTAGAGAGAATC

>CP023486|2|2|1443438-1443584|CRISPRCasFinder
GTGAACTGCCGAATAGGTAGCTGATAAT	GAGATACCACAGGCTCAAGCAGATGCTAACAG
GTGAACTGCCGAATAGGTAGCTGATAAT	AGTCGGTCAACTGAGAATACGTTGTTGCCAA
GTGAACTGCCGCATAGGTAGAGAGAATC

Protein	Signature genes	Signature genes Name	Protein_function
CP023486.1\|AYF22636.1\|1441578_1442706_+\|CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|274205
CP023486.1\|AYF22642.1\|1447017_1448892_-\|transposase	unknown	unknown	gnl\|CDD\|366234
CP023486.1\|AYF22643.1\|1448888_1449512_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378037
CP023486.1\|AYF22647.1\|1451872_1453420_-\|Maltose-maltodextrin-ABC-transporter,-permease-protein-MalF	unknown	unknown	gnl\|CDD\|236816
CP023486.1\|AYF22633.1\|1437946_1438279_-\|membrane-protein	unknown	unknown	unknown
CP023486.1\|AYF22634.1\|1438562_1439753_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377670
CP023486.1\|AYF22628.1\|1434063_1434423_-\|Mobile-element-protein	unknown	unknown	unknown
CP023486.1\|AYF22629.1\|1434983_1435871_+\|type-III-secretion-system-2-OspB	unknown	unknown	unknown
CP023486.1\|AYF22641.1\|1446067_1447021_-\|transposition-protein	unknown	unknown	gnl\|CDD\|377533
CP023486.1\|AYF22646.1\|1450969_1451860_-\|Maltose-maltodextrin-ABC-transporter,-permease-protein-MalG	unknown	unknown	gnl\|CDD\|182891
CP023486.1\|AYF22644.1\|1449653_1450139_+\|cytosolic-long-chain-acyl-CoA-thioester-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224523
CP023486.1\|AYF22639.1\|1444243_1444639_+\|Response-regulator	unknown	unknown	unknown
CP023486.1\|AYF22645.1\|1450340_1450550_+\|hypothetical-protein	unknown	unknown	unknown
CP023486.1\|AYF22637.1\|1442709_1443306_+\|CRISPR-associated-protein-Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|187805
CP023486.1\|AYF22630.1\|1436934_1437240_-\|membrane-protein	unknown	unknown	unknown
CP023486.1\|AYF22640.1\|1444638_1446012_+\|GGDEF-domain	unknown	unknown	gnl\|CDD\|223989
CP023486.1\|AYF22635.1\|1439753_1441676_+\|hypothetical-protein	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|187867
CP023486.1\|AYF22638.1\|1443788_1443995_-\|Transcriptional-regulator,-XRE-family	unknown	unknown	gnl\|CDD\|238045
CP023486.1\|AYF22631.1\|1437299_1437584_-\|hypothetical-protein	unknown	unknown	unknown
CP023486.1\|AYF22632.1\|1437614_1437911_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP023486.1\|AYF22636.1\|1441578_1442706_+\|CRISPR-associated-protein-Csy3	gnl\|CDD\|274205	TIGR02566, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	1.08023e-177
CP023486.1\|AYF22642.1\|1447017_1448892_-\|transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.32712e-09
CP023486.1\|AYF22643.1\|1448888_1449512_-\|hypothetical-protein	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	2.86686e-15
CP023486.1\|AYF22634.1\|1438562_1439753_+\|hypothetical-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	7.60357e-20
CP023486.1\|AYF22637.1\|1442709_1443306_+\|CRISPR-associated-protein-Csy4	gnl\|CDD\|187805	cd09674, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.21771e-81
CP023486.1\|AYF22641.1\|1446067_1447021_-\|transposition-protein	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	2.32085e-22
CP023486.1\|AYF22646.1\|1450969_1451860_-\|Maltose-maltodextrin-ABC-transporter,-permease-protein-MalG	gnl\|CDD\|182891	PRK10998, malG, maltose ABC transporter permease MalG.	0
CP023486.1\|AYF22640.1\|1444638_1446012_+\|GGDEF-domain	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	2.49812e-28
CP023486.1\|AYF22644.1\|1449653_1450139_+\|cytosolic-long-chain-acyl-CoA-thioester-hydrolase-family-protein	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	9.86869e-59
CP023486.1\|AYF22635.1\|1439753_1441676_+\|hypothetical-protein	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	6.35748e-72
CP023486.1\|AYF22638.1\|1443788_1443995_-\|Transcriptional-regulator,-XRE-family	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.30141e-13
CP023486.1\|AYF22647.1\|1451872_1453420_-\|Maltose-maltodextrin-ABC-transporter,-permease-protein-MalF	gnl\|CDD\|236816	PRK10999, malF, maltose ABC transporter permease MalF.	0

>CP023486.1|AYF22637.1|1442709_1443306_+|CRISPR-associated-protein-Csy4
MDWHYRTITFLPEYRNNEAIAAKCIKELHRFNYKYETRSIGVSFPLWGQETVGRKITFVSTNKMELDFLISRRYFVQMTKLGYFSISTTQTVPDDCSYVLFKRAHSIDKGTSAGRARELKRLERRALERGEIFDPIAYSKTTSHAFQSYHSLEEDSSSGNKFRLNIQMKERSGTVGTGKFSSYGLGNTDNSLQVVPLI
>CP023486.1|AYF22636.1|1441578_1442706_+|CRISPR-associated-protein-Csy3
MKIQTPANTFGNITIRSKVRFYFPGAYPMKLPNGLSYMKSIEASDVIFLVNWPDGRKTPLPYTSRVALGMKEGSKSAYKDDGQIDADVTAYSLAQGNPHEIDFCCVPYGAESIECEFSVSFASSLRKPFKCSDPEVKRTLVQLIKLYEEKVGWEELANRFLENICNGRWLWRNNECTYSTSIGIKPWPWEDEKAISPFHDIRKNYAGTNHFRDHKDWDNLIKLITDAFSQPNGLCIFEVSATFRLGTNAPIYPSQVFKDSVKGEKNRIYQSTDVDGESSPILGCYKTGAAIATIDDWYPDADKPIRISHYGAHREDVYCYRHPNTGKDLFTLLEKADQYLEQLQATDVLPDEMINDLHFIVANLIKGGLLQQKGT
>CP023486.1|AYF22635.1|1439753_1441676_+|hypothetical-protein
MATLAEILDNKTDDLNKDLRRAFRPLSAPVDISDTPIEALTILVNLTDRVIEQKNLLDRQKCKDKLRDEKWWANCFRTVKYRQSHNPKFPDIRANGVIRAAPVGHLPACMLSSSKLPKNSWAYANDSSQMNKSCFLTSEFIWNGDVHCLGQLLTELEHPLWNVLRKLGCYVKTAKYISKELALIPPLEINTSLVRNYLAQISLPNGEDSYISLSPVVSQSMQEDCYQVLSEHYRFSAITRFSRATNMGTLAMSCGGKFKMIRSLPPIEKYQHHHLDSVNWLTKRSVRAIRDYTESSVWVISPNKLALRKKSIIGDIKMMLSQWLRTTPTHEEKLDIRKLTERFNVDLAKTKFANRYAYDPLLTQLIYNCIGSIIHSSPQYAPKCEGNDDKYLLLPNLRISGASAMNTSVSIGIPSMMAFYGFVHAFQRNVQTANPNFKIESFAVCIHNIHVENRGLTREWVPNTKGQITAPATRDDWQCDVAVSLILRCSHYSQLIPRDFIRLLPGRIARGKVTVSISDIKHLGRCLSLADAIKAIPVETGRWLSLNNEVTLNSIQDVIDELKNNKLQTVNCIGYHRLETPCEKRGSLHGYKHAFVETILGIIKFLTISENTNPSQYFWQYHYSKQGPILLPRSVSDETS
>CP023486.1|AYF22634.1|1438562_1439753_+|hypothetical-protein
MMLLQRPKSYPDESLESFFIRVANKNGYNDVHWFLVAVKRYLLDIDPRKFQTFPTDICCINPYSSKKHSISRTHALHHLSQLTFNEPVDLLGIALNRNQMQFSPSTTALIRGAEVIPRSLLRKGAIPCCPCCLGEHGYASYRWHFSGYEYCHEHDVKLIERCSCGAIYDYRYAGLSGVCTECGENISASQENHEPKATRIASWLAGDDVKPLPDVPLSYRWGFMHWWSQISSSCKTRNNGEFLAFWEHWPNSFHKLIGKEIDFNFEYCVLSKNDLRVKDILGKILFSSIQLPDRNFRSNIILKEMFQYIETHLWDDNGKLANLRMNMLEICVLLNCSREQVTSMIEQGLLPPNRQLGKREILIVTEYAFYLGDVYCLWLSEFQSDEFNRSFYLSRW
>CP023486.1|AYF22633.1|1437946_1438279_-|membrane-protein
MLYSNQAVKGALNNERFLPRFGYMAECFALLLLIVAGEGFFKPVITLAEKGIDDVVGDVFVNYAFGGLSIFVLCWIYFDFVGNSKPLGNAPNTFIKWTISHLLLMLSLSR
>CP023486.1|AYF22632.1|1437614_1437911_-|hypothetical-protein
MEQYPFKYALIGCLGLATYLYCLLKIQNVIEIRTAHRFATANVSYFGITLCFLTLIIVPFVPSIVANVVWGAALFSQILIPVRTAFKVLTREAKQALD
>CP023486.1|AYF22631.1|1437299_1437584_-|hypothetical-protein
MFQWIATMYRPKVPEHITSFQLAVLVLSVFVVSLAIELVFNLPFDVLQILIYVDTFICAICIIDFVQQYRAAPSKLEYMKWGWLDLIFCIPLME
>CP023486.1|AYF22630.1|1436934_1437240_-|membrane-protein
MISHAINENKASTSLHFMVVTSLMMMLFGSIYILYLEKDMPGTNIHNAGDAFWWTFVTVTTVDLMLYKNFVGVDNGHTEMVDLLSLKASASYSRVRLNQQN
>CP023486.1|AYF22629.1|1434983_1435871_+|type-III-secretion-system-2-OspB
MVVCFLANLFRGVMPNFSIKPMVSMKLSNSDNYQVNAFTNSIKSIQNKKLEKVGAILVLGKDNISRDSINLLGQQVPRVLSGKTPYPVMFLNENAKNEFKSSITSLCKITSSNNCESTDEVVGKALVTAAKSQINLSMEDAKLESFRKIYITGHGSSGMPYIYSGDSKFSIKDIVDLLEKNKILDNIKDIRLTCCNSADKREIRNLSQESIELANRDSSFLENLVYGEKKSLIEKLSSEIWERGYTDVRITGYHGKGVFYNKNELPLTHLRSSTIPATETVKRKYLRVTLESDLD
>CP023486.1|AYF22628.1|1434063_1434423_-|Mobile-element-protein
MDRLLGIHHLHQERLAVYRWHASFICAGNPMPVVLVDWSDIREHKRLMVLRASVALQGRSVTLYEKAFPLSKQCSKSAHDQFLSDLASILPSCVIPLIISDAGFKVSWYKSVEEPDGTG
>CP023486.1|AYF22638.1|1443788_1443995_-|Transcriptional-regulator,-XRE-family
MRDLAKKFGYNVRSMRKDKGISQDKLALAADIDRSYVGRIERGEVNITLEKAYQIASVLQCDIRELLP
>CP023486.1|AYF22639.1|1444243_1444639_+|Response-regulator
MFVSKQLNTMVKQGLLTTSGNNRNKLFHKTTLFQQVNVSSVESEINQGKAVDLVSSVPYIAELNKMRGKLNGELAMLIAEMDEYRSIMAQYPQTQEKVKKLHQESTQLSATLTGQITAISKTIDLLTSEAV
>CP023486.1|AYF22640.1|1444638_1446012_+|GGDEF-domain
MLRDWQRNCIKEALGKYKSGYKHFLTQATPGAGKTVMAAYLSKQLLDSNMIDLIICFSPSANVANGFTRTFSRVLQCSFNGSLGALGTSLTYQAIQYLDEQFWETISKHRVLAIFDEIHHCSGETLSDANAWGEQIILKVQKASKYTLALTGTPWRSDSLPISLSSYSNPEGKIICDYQYTLKQAITDRVCRKPKLVLVDNEQLQYVSPEESKYYSSIQALFKEQKISYSSIVQDTDALVHILKLSASKLLSIRASNQDAGGLIVASSVAHARQIQTILNEQLKQPSVMVSYHDPDAQKIIEQFKNGHSPWIISIGMISEGTDIPRLQVCCHLSNVRTELYFRQVLGRILRITDSNNQEAWLYTLAEENLVKFAEEIEQDIPDSCLYIKQPEDKEEEDAHSLETSSSHTVRTFSKLGNFKWNNSDTSAQVGNENSVPYGSFTLGRFRERVIEAFVGI
>CP023486.1|AYF22641.1|1446067_1447021_-|transposition-protein
MNHFARAPHQQVKSIFISNSQIDEILSDIEECREESDGISEPECLIVVGDSGSGKTTIIDKYLVDNPRMEANDGSIIPILFTSLPANANPVTASERLLSSMGDPLAFSHGKDPAELMKIVNDLLRECRVELIIIDEFQHMIDRKSKDVLHSTADWLKMIIIDSKIPVVLFGMPYSTEILRVNNQLRGRFESQHHLKPFRVKDTSELIRYKTFMTMLDAALPFLEESGLASEDIMKRVYIFSKGNMRLIRRLINKAAKFALLENAPCISLKHFARAAPKVSRDACKSFNPFDTDTKKLKIIEPPEDVGWENYLAAKGD
>CP023486.1|AYF22642.1|1447017_1448892_-|transposase
MSDDSENLYAFGSFFPEKHSNTSVPKTSKGTRFGIELQESYQDLFSFDEKRRDEAIHRYNILDYLIELHGPSLTLKKISGSMKGLADKFHPNVPSAPSIYRYWTTFKKSGFVLSSLIPGVTRGNTKQRKTLELEEYIERAIKSYFSAESPTIQQAFTLLETEIDRHNECNDTQLSFEYESFRKRIVKKTDYERLLIKKGKKAADTYYKKVGQRPETTRVLQRVEADHTRLDLFVIDDARKLPLGRPWLTLLFDTHTKSVVGFYLGFEPPGYLSVSLALENAILPKYYVKELYPEVKGEWPCYGLPEHLIVDNGAEFNSKDFVTACKNLRIKVKKNPVKKPWLKGSVERYFRTINNKLLSGIPGKSFSNIFARGDYNPQKNAIITRSDLMKVIHVWLIDIYQSSPNGLENNIPNLSWADAMRSAFPPRSFNGSIDELRFNLGKHVEISLDRNGIRLKKTLRYTSSYLAQYFGKHTYDGKSIKVKIKYNPICMGNIYVLDEDKHEFFAVESVDPDYAYSVSEWLHKVCCDYARNHIRNNYRHNDVIKAWRVIYDIIDEALHLSGNGKQANVGIRQASKLERVREHAERTKSHQKPELHMSSNDDIDWDVEVNTDGWKIDSVRGTNK
>CP023486.1|AYF22643.1|1448888_1449512_-|hypothetical-protein
MKKRIIKNSKVKNISRFVSLKTDSVQTTESDLEFDACFHFEFASHVKSFETQPLGFEYRLNGRLRRYTPDMLCYFNDGYATYYEVKPKWVTERDEFKKKFDAQKQQAIANGYDLLVLTEDDIQTYPLLDNLKIIHRYACSDSLDNVQVRILKLFQNYGEMRISQVINASQGQSASILPALYDLIAKKILEFDWHCPISHDSLVWRVS
>CP023486.1|AYF22644.1|1449653_1450139_+|cytosolic-long-chain-acyl-CoA-thioester-hydrolase-family-protein
MSSGQRDITLRFLAEPGDVNFGGKVHGGAVMKWIDLAAYACSAAWSGKYCITAYAGGIRFVAPIHVGNLVEVSAKVIYTGRSSMHIAIDVQASDPKQMKNRLTTHCIVIMVAVDESGKPTDVPKWIPESDEDKALEQSAIRLMNMRKEIGEEMEAHVKYLK
>CP023486.1|AYF22645.1|1450340_1450550_+|hypothetical-protein
MTNLKAVEYQWVRTMYVEGYNESEINHYIQTCFGGDTTFANLFRRVALQQESLYTLLQYVGCAPSSREF
>CP023486.1|AYF22646.1|1450969_1451860_-|Maltose-maltodextrin-ABC-transporter,-permease-protein-MalG
MAMVQGKSLKYRVWATHIAMWAFLALIIFPLLMIIAISFREGNFATGSLIPDNPTLDHWKLALGFSITNADGTVTPPPFPVMTWLWNSVKVGGISAILIVALSTTSAYAFARMKFKGKNTILKAMMIFQMFPAVLALVALYALFDKLGQYIPFLGLNTHGGLIFAYLGGIALHVWTIKGYFESIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIMVIGEVPVASLLLSDVDSYTLAVGMQQYLYPQNYLWGDFAAAAVLSAVPITAVFLLAQRWLVGGLTAGGVKG
>CP023486.1|AYF22647.1|1451872_1453420_-|Maltose-maltodextrin-ABC-transporter,-permease-protein-MalF
MTAPEASLPSSKKVFIKWSLLGTVGILNGYATILMYSRGEIAFALLTIILTALALFIFGSKKTYAHRYIYPGIAGMILFILFPLAYTIGLAFTNYSAKNQLSFDRAQSVLLDRTYQSGDSYPFTLYNTEQGHQIVVEKDGELLATPVFQLQGFSETDLDLAPITEAAGDKEPIKTIVKNRTALSSVDLHLPNGDDIRMSGLRKFAAVVPLYTLQEDGETLYNNRTQETLRPNMEVGYYQPVDENGQFVGSTVSPGFVVNIGTHNFERVWKDDGIKEPFISIFIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLILPYAVPAFISILIFKGLFNQSFGEINMLLEGLFGISPAWFSDPFMAKTMILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRITMPMMLKPLTPLLIASFAFNFNNFVLIQLLTGGGPNMIGTSEPAGYTDLLVSYTYRIAFEGAGGQDFGLASAVATLIFLLVGALALINLRVTKVAQD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP023486_2	2.1\|1443466\|32\|CP023486\|CRISPRCasFinder	1443466-1443497	32	NZ_CP017904	Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence	201007-201038	2	0.938
CP023486_2	2.1\|1443466\|32\|CP023486\|CRISPRCasFinder	1443466-1443497	32	NZ_CP017901	Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence	206663-206694	2	0.938
CP023486_2	2.1\|1443466\|32\|CP023486\|CRISPRCasFinder	1443466-1443497	32	NZ_CP017909	Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence	203227-203258	2	0.938
CP023486_2	2.1\|1443466\|32\|CP023486\|CRISPRCasFinder	1443466-1443497	32	NZ_CP017893	Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence	184601-184632	2	0.938
CP023486_2	2.1\|1443466\|32\|CP023486\|CRISPRCasFinder	1443466-1443497	32	NZ_CP017898	Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence	206028-206059	2	0.938

1. spacer 2.1|1443466|32|CP023486|CRISPRCasFinder matches to NZ_CP017904 (Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence) position: , mismatch: 2, identity: 0.938

gagataccacaggctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .******************************

2. spacer 2.1|1443466|32|CP023486|CRISPRCasFinder matches to NZ_CP017901 (Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence) position: , mismatch: 2, identity: 0.938

gagataccacaggctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .******************************

3. spacer 2.1|1443466|32|CP023486|CRISPRCasFinder matches to NZ_CP017909 (Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence) position: , mismatch: 2, identity: 0.938

gagataccacaggctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .******************************

4. spacer 2.1|1443466|32|CP023486|CRISPRCasFinder matches to NZ_CP017893 (Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence) position: , mismatch: 2, identity: 0.938

gagataccacaggctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .******************************

5. spacer 2.1|1443466|32|CP023486|CRISPRCasFinder matches to NZ_CP017898 (Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence) position: , mismatch: 2, identity: 0.938

gagataccacaggctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .******************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023485

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP023486

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection