CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP029460	Clostridium novyi strain 150557 plasmid pCN2, complete sequence	1 crisprs	cas7,cas6	0	3	0
CP029458	Clostridium novyi strain 150557 chromosome, complete genome	4 crisprs	DinG,cas14j,csa3,cas3,cas3HD,cas10,csm3gr7,csx19,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,DEDDh,c2c10_CAS-V-U3,cas14k	1	26	5
CP029459	Clostridium novyi strain 150557 plasmid pCN1, complete sequence	0 crisprs	cas14j	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029458_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029458_1

703011-703121

Unclear

Consensus_repeat	Method
ATAGGACTTGAACCTACGACACTTCGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029458_1

>merge|CP029458|1|703011-703121|CRISPRCasFinder
ATAGGACTTGAACCTACGACACTTCGGGTATGAACCGAATGCTCTAGCCAGCTGAGCTATTCCGCCACGTATGGTTGCGGGGATAGGACTTGAACCTACGACCTTCGGGTT

>CP029458|1|1|703011-703121|CRISPRCasFinder
ATAGGACTTGAACCTACGACACTTCGGGT	ATGAACCGAATGCTCTAGCCAGCTGAGCTATTCCGCCACGTATGGTTGCGGGG
ATAGGACTTGAACCTACGACCTTCGGGTT

Protein	Signature genes	Signature genes Name	Protein_function
CP029458.1\|AYF53822.1\|705360_705639_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
CP029458.1\|AYF53810.1\|692398_693178_-\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
CP029458.1\|AYF53824.1\|707221_708748_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
CP029458.1\|AYF53825.1\|708843_709395_-\|stage-V-sporulation-protein-T	unknown	unknown	gnl\|CDD\|131898
CP029458.1\|AYF53817.1\|703409_703820_-\|RNA-binding-protein-S1	unknown	unknown	gnl\|CDD\|235614
CP029458.1\|AYF53813.1\|695594_697583_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
CP029458.1\|AYF53816.1\|699705_702099_-\|stage-II-sporulation-protein-E	unknown	unknown	gnl\|CDD\|274328
CP029458.1\|AYF53812.1\|695068_695455_-\|dihydrolipoamide-acyltransferase	unknown	unknown	gnl\|CDD\|227783
CP029458.1\|AYF53807.1\|689091_690624_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
CP029458.1\|AYF53811.1\|693302_694973_-\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
CP029458.1\|AYF53814.1\|697646_698186_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
CP029458.1\|AYF53821.1\|705019_705286_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|224109
CP029458.1\|AYF53818.1\|703876_704149_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|368217
CP029458.1\|AYF53823.1\|705747_707193_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|226465
CP029458.1\|AYF53819.1\|704228_704624_-\|spore-cortex-biosynthesis-protein-YabQ	unknown	unknown	gnl\|CDD\|131939
CP029458.1\|AYF53809.1\|691427_692390_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
CP029458.1\|AYF53815.1\|698190_699594_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
CP029458.1\|AYF53826.1\|709842_710889_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
CP029458.1\|AYF53808.1\|690671_691151_-\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
CP029458.1\|AYF53820.1\|704630_704921_-\|sporulation-protein-YabP	unknown	unknown	gnl\|CDD\|274341

Protein	Function_ID	Function_description	E-value
CP029458.1\|AYF53822.1\|705360_705639_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	6.54561e-42
CP029458.1\|AYF53810.1\|692398_693178_-\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	3.70892e-154
CP029458.1\|AYF53824.1\|707221_708748_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	4.75309e-127
CP029458.1\|AYF53825.1\|708843_709395_-\|stage-V-sporulation-protein-T	gnl\|CDD\|131898	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See pfam04014). [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination].	2.45573e-93
CP029458.1\|AYF53817.1\|703409_703820_-\|RNA-binding-protein-S1	gnl\|CDD\|235614	PRK05807, PRK05807, RNA-binding protein S1.	1.5235e-71
CP029458.1\|AYF53813.1\|695594_697583_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
CP029458.1\|AYF53816.1\|699705_702099_-\|stage-II-sporulation-protein-E	gnl\|CDD\|274328	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs. [Cellular processes, Sporulation and germination].	0
CP029458.1\|AYF53812.1\|695068_695455_-\|dihydrolipoamide-acyltransferase	gnl\|CDD\|227783	COG5496, COG5496, Predicted thioesterase [General function prediction only].	4.33177e-29
CP029458.1\|AYF53807.1\|689091_690624_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
CP029458.1\|AYF53811.1\|693302_694973_-\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
CP029458.1\|AYF53814.1\|697646_698186_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	1.71319e-90
CP029458.1\|AYF53821.1\|705019_705286_-\|RNA-binding-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	1.89989e-27
CP029458.1\|AYF53818.1\|703876_704149_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	0.00721875
CP029458.1\|AYF53823.1\|705747_707193_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|226465	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only].	0
CP029458.1\|AYF53819.1\|704228_704624_-\|spore-cortex-biosynthesis-protein-YabQ	gnl\|CDD\|131939	TIGR02893, Spore_protein_YabQ, spore cortex biosynthesis protein YabQ. YabQ, a protein predicted to span the membrane several times, is found in exactly those genomes whose species perform sporulation in the style of Bacillus subtilis, Clostridium tetani, and others of the Firmicutes. Mutation of this sigma(E)-dependent gene blocks development of the spore cortex. The length of the C-terminal region, including some hydrophobic regions, is rather variable between members. [Cellular processes, Sporulation and germination].	2.17891e-16
CP029458.1\|AYF53809.1\|691427_692390_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	5.8015e-140
CP029458.1\|AYF53815.1\|698190_699594_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	2.35479e-76
CP029458.1\|AYF53826.1\|709842_710889_-\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	5.49426e-113
CP029458.1\|AYF53808.1\|690671_691151_-\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	7.05992e-77
CP029458.1\|AYF53820.1\|704630_704921_-\|sporulation-protein-YabP	gnl\|CDD\|274341	TIGR02892, conserved_hypothetical_protein, sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein. [Cellular processes, Sporulation and germination].	7.21399e-24

>CP029458.1|AYF53816.1|699705_702099_-|stage-II-sporulation-protein-E
MQYNSEILPYRRVKNAGVEQKEKKQIQRLLIFKNLIYFFSAMLVSRVLLLNEDSTMAPFGIALLIATVIQSRKVVIPMSLGCFVGYISLNDRISSLYEYLIIIISLMILSYVLNKKNRIRNISVIFSVISLEILLSEFFIKHLTLNVAFLTMFLQMICIIPLYFILERSIICIKALKSKHLFTSEEIISISMLISLILAGTWGVEIFNVSIRNILALNFILMISYINGSNVGAASGIAIGSIIGISSENILIFMSVYGLCGLIAGIFKESGKILTSAAYVITFLILKLYSNIDIEFKLVEIIISTTIFLIIPSKVYEKINLELDWEKKQDYLNKNYINRIKDMLFQRLYGFSNVLYNISGNLNTLADNDKLVMKNKSSALIENLADRVCGNCKMNSNCWKKEIYVTYNAFGELIQNHQEGNNKLPEEINRKCIKRTILLNNTKEIVNNYIINEMWRKRLSEGREIIAGQINNMASSLKEVMEEFNSDVKFNSDAEKRIRKIFENKTFKYNDIFCYEDKNNRLNVKLYLKSCGGAQLCSKKILPLISEAVGKNMCISDEGCVIDPKTSICTMTFEEATKFYVSSYVSRQCKNGEKQNGDSYSFGKVLDGSYMCIISDGMGSGPEASEESKVAVELIEKFTRFGISKATAINTVNSIMSLKFSESEKFSTLDLTSIDLYTGDTSFMKVGAVPSFIKSGKNVEVIVSNTLPIGVLDKVDLEVTNKRLKNGDIIVMLSDGVLDYDNNNVGKFDWVLDYLKNSNINSPKELVDGIISRAKELSGGRAKDDMTAIVCKVYSVY
>CP029458.1|AYF53815.1|698190_699594_-|tRNA-lysidine(34)-synthetase-TilS
MGVFSLIEKVIHTIKQNNMFEVGDKVVVAVSGGPDSICLLHILYKLKEKIGISIVAAHINHCLRGEEADKDEEYVRKFCENLNIQCFVKKEDVHKISKDRGISCEMAGREVRYDFFSEVLNNVRANKIAVAHNANDQAETILMRMLRGTGLEGLIGIRAVRDNIFVRPIIDITRDEIEDYCYVNNLNPRIDKTNLENIYTRNKIRLELIPYIQKNFNSDVIEVLNRFSDTVKIDNDYLNKVSLEKYNKYCKGEKDKVIIKEEVFKEHEAILTRVIRMALKELKGNLNNFDKGHIYDIIDIQKKSTGKFIMLPKNIRVLNNYGDINLYKNNNKINIDKGKQEYNLVINKENILDNGLKITLDIINNVEDTKFDKSSLIKYFDYDKINRDIKLRYRNNGDKFVPLGMKGTKKLKDLFINLKIPKEKRDIIPLIVFDDEISWIVGYRISDKFKINKNTKRILKIKIEREE
>CP029458.1|AYF53814.1|697646_698186_-|hypoxanthine-phosphoribosyltransferase
MRNDIERVLFSEEELREKVKKMGREISEDYKGKDVILVGILKGSVPFMADLMKYIEIPCKIDFMDVSSYGNSTESSGVVRILKDLEFEVEGRDILIIEDIVDTGTTLEYLKTYLKSKNPNSVSVACLLNKPDRRKVEVDVKYLGYEVPDEFLVGYGLDYAEKYRNLPFIGILKESVYKK
>CP029458.1|AYF53813.1|695594_697583_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MGGINVKKRLSSATIWILLLICVFFAALTLLQSNKAAGTVSYNQFKKYWIDNKVSRVEIKQDGRTVVGELNDKSKTQFQVVVPQTLLMQDILVNNPKPSVDVKFEPASSMPMWISWIPTIILILLMIGFWVMFMQQSQGGGGNRGVMNFGKSRAKLASPDSQKVTFKEVAGADEEKAELEEIVDFLKAPNKYLDMGARIPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGVNEGIILVAATNRPDILDKALLRPGRFDRQILVGAPDAKGREEVLKVHVRNKHLEDDVDLKVLAKRTPGFVGADLENLMNEAALLAVRNNKKKIGMIELEEAITRVIAGPEKKSRVIHEEDRKLTAYHEAGHAIVAKFSRYSDPVHEISIIPRGMAGGYTMQLPERDKSYASKSKLKDDMVGLLGGRVAEQLILGDISTGASNDIQRVSNIARKMVMEYGMSEKLGTITFGSDHDEVFIGRDIGKSKNYSEEVAFEIDNEVKSLVSEAYKKAEKILTEHIDKLHVVAKRLLEKEKISGEEFNAIVEGKEFNEEKENAIDLEKHDDMQEVKELEKQTISEEANKDSIDAFSQDLNTEGKKEI
>CP029458.1|AYF53812.1|695068_695455_-|dihydrolipoamide-acyltransferase
MEFNVHEGTKGLMEMVVEEQHSAKRVGSGLVDVFSTPSMIALMENTSQASVKDSLPEGYATVGIEISVKHMKATPIGMKVRCETILKKVDRKKLVFEVEAYDEAGKIGEGTHIRYIVNSEEFIKNIQK
>CP029458.1|AYF53811.1|693302_694973_-|formate--tetrahydrofolate-ligase
MKSDIEIAQGANMKRITDIAKNLGLQDDDIELYGNYKCKISLDVLKNRRNEKDGKLILVTAINPTPAGEGKSTITVGLGQALCKLNKKAVIALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDMHAITSANNLLAAAIDNHIHQGNDLKIDSRRIVFKRVMDMNDRALRNVVVGMGGKVNGFLREEGFTITVASEIMAILCLSNSLMDLKQKFGEILVAYNINGEPVYCKDLKVQGAMAMLMKDAIKPNLVQTLENTPAIIHGGPFANIAHGCNSILATKMAMKLGEFAITEAGFGADLGAEKFLDIKCRKGNIKPDCIVVVATIRALKHHGGVSKDKLTIPNVDALKAGIGNLEKQIENMKKYRVPVVVAINKFITDSDEEIKCIKDFCKNKDVEVSLAEVWEKGGDGGIELAKKVIKVLEENKGDFKYLYDQELSIKEKINVIAKEIYGASQVQYDNKAEKEIKDIEDMGLDKVPICVAKTQYSLSDDPTLLGNPKNFKINVKEVRVSNGAGFIVVLTGNIMTMPGLPKTPAANRMDILEDGTIQGLF
>CP029458.1|AYF53810.1|692398_693178_-|type-III-pantothenate-kinase
MLFVLDAGNTNIVLGIYKGEELVLECRLGTDAKRTADEYGIQVLELLSHNNIDPKDIEGVIISSVVPNIMYSIEHMIRKYFNVEPIVVGPGVKTGINIKYDNPKSVGADRIVNAVAAHELFKKPLIIIDFGTATTYCAVTKKGDYLGGAICPGIKISAAALFEKAAKLPRIELIKPSHVICKNTVTSMQAGIVYGYIGQVDYIVSKIKQEMIQLGEGEPYVIATGGFATLISEDSTTIDKVCPFLTLEGLKIIYEKNKE
>CP029458.1|AYF53809.1|691427_692390_-|tRNA-dihydrouridine-synthase-DusB
MKIGNLNFKNNVFLAPMAGVTDIAYRGLCKEMGCGLVYTEMISAKGMYYNNENTKKLLMLSKEEKPVAAQIFGSDPLVMARACEILNEDDGVCIIDINMGCPAPKIVKNGEGSALMKTPELAAKIVMEMKKISKKPVTVKFRKGFDNDNINAVEFAKRMEQAGVDAVAIHGRTRAQMYEGKADWDIIRRVKEAVDIPVIGNGDVFSAEKAFQLKEETNCDGIMIARGAMGNPWIFKQIQLALNNEEVIYPTPEEKIDMCIRHLKLAIQYHGELKAVREMRKHIAWYIKGIKNCTDIKNKINVEKESDNVIKILTEYKSML
>CP029458.1|AYF53808.1|690671_691151_-|transcription-elongation-factor-GreA
MSDSKQYIMTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEGRIVQIENMLRNANVVDESEIPKDVVSVGSIVKVKDYDFDEEIDFHIVGSAEADPMENKISNESPVGSALIGKKVGDIVDVPVPDGISKFEILEIRI
>CP029458.1|AYF53807.1|689091_690624_-|lysine--tRNA-ligase
MGEKQLTKEEIKQRKMEAKKEAEFNALVKERMQKLSNLQEQGKDPFDVYKVERTHTSKQVKDNYDELEGKNVTVAGRLMSKRVHGKAGFSDIRDRYGKIQLYIKIDDVGEEKLKEYKTFDIGDFVSITGTVFKTKTGEVTLHIVDFKLLTKSLKPLPEKFHGLKDPDLRYRQRYVDLIMNEDVRETFMKRTAIIKAIREFLDNRDFLEVETPILSPIAGGAAAKPFITHHNALDIDMYLRIATELYLKRLIVGGFEKVYEIGKNFRNEGIDIRHNPEFTAIELYEAYADYNDMMEITENMVAYVCEKVNGTTKVMYEGTEIDFKPPWRRITMVDAVKEFAGVDFNEVNTDEEAREIAKEKGLELKKELKDCTKGDILVALFEEFGEEKLMQPTFVCDYPKENSPLTKKKRGNDALTERFEGFVYGREICNAYSELNDPIVQKERFVQQLKERELGDDEAYMMDDDFINALEIGMPPTGGLGIGIDRLIMFLTDSSSIRDVILFPTMKPTK
>CP029458.1|AYF53817.1|703409_703820_-|RNA-binding-protein-S1
MALKLGSILEGTVVNITKFGAFIEVEGKTGLVHISEVADTYVKDIREHIKEQDKVKVKVISVDDGGRLSLSIKQAMPSRKSSKPVEIDWDKEKKKSVPSSVNFEDAISRFLKDSEERFQDIRKHQNIKGNKYSKKS
>CP029458.1|AYF53818.1|703876_704149_-|dihydroorotate-dehydrogenase
MKNKSKIKVMILTIIIIYACYILVHQQMTIKNKKIQLENCKIELQKVNDQHQRLLDTIKMSETNRYVEQLARERLGFLKQGETVVVNKKD
>CP029458.1|AYF53819.1|704228_704624_-|spore-cortex-biosynthesis-protein-YabQ
MLIPIQSQFNLIFYSVLAGVLTGMLFDIYRIIRGIENPNRILTFIEDILFWIFTGILVFIFLLYTGHVYVGIYLYLYISLGIYIYIRFISIHFLKIQYKLIRGIFKFLRILKNLLIYFLEIMFYKVTRKNK
>CP029458.1|AYF53820.1|704630_704921_-|sporulation-protein-YabP
MEVKKESLESKKSNLILENRNKLMITGVVEVVCFDEKIIILDTRLGTLTIKGEGLKVQKLDVQNGEVAIIGHINSCVYTTTQSKKDKDSIIARLFR
>CP029458.1|AYF53821.1|705019_705286_-|RNA-binding-protein
MRLDKYLKVSRIIKRRTVAKEACESGRVFINGKVAKPSSEVIENDIIEVKFANSSLKAKVINITNHVLKADAKSMYEIIFDNIVTKEE
>CP029458.1|AYF53822.1|705360_705639_-|HU-family-DNA-binding-protein
MNKAELITSMAEKSQLTKKDAEVALRAFIESVEEALMDGDKVQLVGFGTFETRERAERKGRNPRTKEEITIPAATVPVFKAGKEFKEIVNNK
>CP029458.1|AYF53823.1|705747_707193_-|nucleoside-triphosphate-pyrophosphohydrolase
MIKIVGLGPGSKDAITIGTLDILKNSENVYFRTKIHPNVEYLKNLGVKFESYDNKYESSQGFDEVYESIAKDLIEKHKNHGDLVYAVPGHPLVAEKSVNILLQLCEDNGIELKILPAISFIDAMMESLKLDPVTGVKVIDAFDIKNQILDKRVGTVITQVYNKFIASEVKLALLEYYRDDMEIYFVRAAGVEGLESIRKIPLYELDRQEDIDYLTSIYIPKNLNVAKDFQDLLDIMEQLRGEDGCPWDKEQDHNSLKRSLIEECYEVIDAIEKEDDENLVEELGDVLLQVVFHAQIGKEEGYFNINDIISSICDKLIKRHPHVFGNLDINDSTDVLKKWDEIKQEENGFDTYTDELKHISKCLPALIRAEKVQKNAAKVGFDWDNIEPILNKILEEYEEVKSAYKSHNKEKITEELGDLIFSVVNVARFLDIDPENALNYTIDKFISRFYYIENKVKELDKDITEMSLEELDKFWEMSKEK
>CP029458.1|AYF53824.1|707221_708748_-|polysaccharide-biosynthesis-protein
MKKQSLIKGTFILGFAGIFARCIGMCFRIPLTILVGDEGLGYYQMAYPLYMLFIAIASGVPLAMSKMISEQNAKSNEKGILQVLKQASLLMIILGMGTSVTILALSKKLIFLFRWDIKAYYSLTALGIAPFFIAIVSVFRGFFQGLQNMTPTAISQILEQIARVFVGIGLAFMLLPKGVEYAAGGATLGAAAGGILAGIYLIGKYKKVIKDFKIRKVEFNSTVMDELLKTSIPISLGAAVGTIMNVIDSIMVPQRLLEAGFSSKDAAILYGQLTGKAAVLVNVPLTLSAAICASVVPIISEAYILKNTNELNKNILSAIKISIVIALPSLCGLYFLSSQVLTLIFRDQAQGAMILKYSSLAIPFIILAQTTTVILQATSSKKMPIINLLIGCIVKMVVTSILVPIPNINVYGAIIGTISAYIVAVSLNILLLNKKMNIKIDLTQIFIKPAYASIAMILLVVFIYIKVYNYTMSNSIACLISIFLGIISYGILMILSGTFDYRKIKSRK
>CP029458.1|AYF53825.1|708843_709395_-|stage-V-sporulation-protein-T
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFTDRDGGVILKKYSPIEELSNFSKEYAEALHNTIGNIILICDKDNIISVSGATKKEYMDRKISIELERLMEERNSILMGEEGEKVIPITDDEETAEEYSSQVIVPIIAEGDAIGAVIIASKEDDVSFGDVEVKLAEAAASFLGKQME
>CP029458.1|AYF53826.1|709842_710889_-|peptidylprolyl-isomerase
MKNIRKLVATAVLCIFTMSAVGCSMIEKTPEAIKKTVVAKVGDRKITKGELDSHFGVKRYLDQFKQQYGENFEQNPQIKEQVKQIKIAVAKQIASQEALKQEAERLKLVPNDQELKKEIDKKTEEFKKEQHIKDNKGLDEALKMSGLQKSDFENIIKDNIIIEKLQNELTKNIKVDDKEIEKYYNKNKDNYPKDPKNPTKIHVAHIILKVKTPEDDAKAKDEIKSIKEELNKGADFAVLAKKYSQDGSKDNGGDLGTVPAINSKFDQDFMNAALTLKDGEISDPVKTQFGYHIIKMIKREEAPCKTFAEVKNQVKEDILQNKKSEVINNKFKEIQDKASLKIFEDKIA

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Crispr_ID: CP029458_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029458_2

1398548-1400547

TypeIII

III-B

Consensus_repeat	Method
GTTGAAGTTGAACATTAACATAAGATGTATT	PILER-CR
GTTGAACATTAACATAAGATGTATTTAAAT	CRISPRCasFinder
GTTGAACATTAACATAAGATGTATT	CRT
GTTGAACATTAACATAAGATGTATTTAAAT	PILER-CR

30 spacers

csm3gr7,csx19,cas10,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2

The CRISPR arrays of CP029458_2

>merge|CP029458|2|1398548-1400547|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTGAAGTTGAACATTAACATAAGATGTATTCTTCACCCTTACCCCCAGCATAAGCAATATTTTGTTGAAGTTGAACATTAACATAAGATGTATTGAAGATGAATTTATAGTTTACAGGTATGATAGAAAAGTTGAAGTTGAACATTAACATAAGATGTATTCCTCACACTGTTATAACTTTGTATAACTTATTTATGTTGAAGTTGAACATTAACATAAGATGTATTTTTTACTTGATACAGGATACATCGTATAATCCGGGTTGAAGTTGAACATTAACATAAGATGTATGTTGAAACCTAAAAATTATGAAGCTCCAGTTAAAAGTTGAAGTTGAACATTAACATAAGATGTATTATAATTGAGCTTCCTTGTTTATAGTTTTTTCCATGGTTGAAGTTGAACATTAACATAAGATGTATTTAAATCTTTTAAAAATTTTGGTATCTGTTTGCTCTGCTGGCGTTGAACATTAACATAAGATGTATTTAAATAGATGGAGTAACAATAGTTTCTTTTCCTACAAAATAGTTGAACATTAACATAAGATGTATTTAAATTATATTATTCCTCCTTTAATTAAAGAAAATATTCAGTTGAACATTAACATAAGATGTATTTAAATCTATCTTTATCTATCTCTTTCTCTTTCTCTAACTCTGTTGAACATTAACATAAGATGTATTTAAATGTATCTGTTATCTTTTTTCTTATATTAATTTTAGTTGAACATTAACATAAGATGTATTTAAATTTTTGGTTACCTCCACTATTTTCTTTATATCTAATGTTGAACATTAACATAAGATGTATTTAAATAAACTTAAACAAAATGATTGAATGTGAAGAAGAAATGTTGAACATTAACATAAGATGTATTTAAATTTTATACGAGATCTTGTATATGGAATTTTGTAACTTGTTGAACATTAACATAAGATGTATTTAAATGTAAAACTTTTTACCAACATCAAATATCCACTTTCAGTTGAACATTAACATAAGATGTATTTAAATATTTCATATGTTTCCCCATAATCAGCTAAGACTTTGTTGAACATTAACATAAGATGTATTTAAATCTAAAGTATATATTAACATCTCTATCGTTAAAATTGTTGAACATTAACATAAGATGTATTTAAATAATCTTTTGAATTATTGAATATAAACCCTAGATCATCGTTGAACATTAACATAAGATGTATTTAAATCAGCCACACGATAATAACTTTTTAAATCTAAGTCCGTTGAACATTAACATAAGATGTATTTAAATTCGGCAGTAATGCTAGAGAAATAATTCTACTAACTGGTTGAACATTAACATAAGATGTATTTAAATCAAAATGACAGTCTTATAGCATTATTTATTGGAATTATGTTGAACATTAACATAAGATGTATTTAAATAATTAACTATTAGACAAATTAAATTCGTAAACAAGTTGAACATTAACATAAGATGTATTTAAATTTCCTGCTGTTGTTGTAGTTTGCTGGCATCTTGCGTTGAACATTAACATAAGATGTATTTAAATAACTTTTATTAAGTAAATTACATGTTACACTTTACGTTGAACATTAACATAAGATGTATTTAAATTTTAATAGAAGGAGTGATTAAATGAGGTTATACAGTTGAACATTAACATAAGATGTATTTAAATATTTCCTCTAATGCGTTTTTAAATGTAGAATTTATGTTGAACATTAACATAAGATGTATTTAAATGTGTTAAAAACAATTTTATCTTCATCTATTACAAGTTGAACATTAACATAAGATGTATTTAAATCACTTTGAATATGAGCAAGGTTCTCATGATGCTGTTGGTTGAACATTAACATAAGATGTATTTAAATTTCACTTTCACAAATTTCACCTCTGTTCATATTTCTGTTGAACATTAACATAAGATGTATTTAAATCCGGTTCCAGATTTAAAATCAATTGAACCTAGTTTAAGTTGAACATTAATATAAGATGTAGGTTGTT

>CP029458|2|1|1398548-1398840|PILER-CR
GTTGAAGTTGAACATTAACATAAGATGTATT	CTTCACCCTTACCCCCAGCATAAGCAATATTTT
GTTGAAGTTGAACATTAACATAAGATGTATT	GAAGATGAATTTATAGTTTACAGGTATGATAGAAAA
GTTGAAGTTGAACATTAACATAAGATGTATT	CCTCACACTGTTATAACTTTGTATAACTTATTTAT
GTTGAAGTTGAACATTAACATAAGATGTATT	TTTTACTTGATACAGGATACATCGTATAATCCGG
GTTGAAGTTGAACATTAACATAAGATGTATGTTGAAACCTAAAAATTATGAAGCTCCAGTTAAAAGTTGAAGTTGAACATTAACATAAGATGTATTATAATTGAGCTTCCTTGTTTATAGTTTTTTCCATGGTTGAAGTTGAACATTAACATAAGATGTATTTAAAT	CTTTTAAAAATTTTGGTATCTGTTTGCTCTGCTGGC
GTTGAACATTAACATAAGATGTATTTAAAT	AGATGGAGTAACAATAGTTTCTTTTCCTACAAAATA
GTTGAACATTAACATAAGATGTATTTAAAT	TATATTATTCCTCCTTTAATTAAAGAAAATATTCA
GTTGAACATTAACATAAGATGTATTTAAAT	CTATCTTTATCTATCTCTTTCTCTTTCTCTAACTCT
GTTGAACATTAACATAAGATGTATTTAAAT	GTATCTGTTATCTTTTTTCTTATATTAATTTTA
GTTGAACATTAACATAAGATGTATTTAAAT	TTTTGGTTACCTCCACTATTTTCTTTATATCTAAT
GTTGAACATTAACATAAGATGTATTTAAAT	AAACTTAAACAAAATGATTGAATGTGAAGAAGAAAT
GTTGAACATTAACATAAGATGTATTTAAAT	TTTATACGAGATCTTGTATATGGAATTTTGTAACTT
GTTGAACATTAACATAAGATGTATTTAAAT	GTAAAACTTTTTACCAACATCAAATATCCACTTTCA
GTTGAACATTAACATAAGATGTATTTAAAT	ATTTCATATGTTTCCCCATAATCAGCTAAGACTTT
GTTGAACATTAACATAAGATGTATTTAAAT	CTAAAGTATATATTAACATCTCTATCGTTAAAATT
GTTGAACATTAACATAAGATGTATTTAAAT	AATCTTTTGAATTATTGAATATAAACCCTAGATCATC
GTTGAACATTAACATAAGATGTATTTAAAT	CAGCCACACGATAATAACTTTTTAAATCTAAGTCC
GTTGAACATTAACATAAGATGTATTTAAAT	TCGGCAGTAATGCTAGAGAAATAATTCTACTAACTG
GTTGAACATTAACATAAGATGTATTTAAAT	CAAAATGACAGTCTTATAGCATTATTTATTGGAATTAT
GTTGAACATTAACATAAGATGTATTTAAAT	AATTAACTATTAGACAAATTAAATTCGTAAACAA
GTTGAACATTAACATAAGATGTATTTAAAT	TTCCTGCTGTTGTTGTAGTTTGCTGGCATCTTGC
GTTGAACATTAACATAAGATGTATTTAAAT	AACTTTTATTAAGTAAATTACATGTTACACTTTAC
GTTGAACATTAACATAAGATGTATTTAAAT	TTTAATAGAAGGAGTGATTAAATGAGGTTATACA
GTTGAACATTAACATAAGATGTATTTAAAT	ATTTCCTCTAATGCGTTTTTAAATGTAGAATTTAT
GTTGAACATTAACATAAGATGTATTTAAAT	GTGTTAAAAACAATTTTATCTTCATCTATTACAA
GTTGAACATTAACATAAGATGTATTTAAAT	CACTTTGAATATGAGCAAGGTTCTCATGATGCTGTTG
GTTGAACATTAACATAAGATGTATTTAAAT	TTCACTTTCACAAATTTCACCTCTGTTCATATTTCT


>CP029458|2|2|1398554-1400547|CRISPRCasFinder
GTTGAACATTAACATAAGATGTATTCTTCA	CCCTTACCCCCAGCATAAGCAATATTTTGTTGAA
GTTGAACATTAACATAAGATGTATTGAAGA	TGAATTTATAGTTTACAGGTATGATAGAAAAGTTGAA
GTTGAACATTAACATAAGATGTATTCCTCA	CACTGTTATAACTTTGTATAACTTATTTATGTTGAA
GTTGAACATTAACATAAGATGTATTTTTTA	CTTGATACAGGATACATCGTATAATCCGGGTTGAA
GTTGAACATTAACATAAGATGTATGTTGAA	ACCTAAAAATTATGAAGCTCCAGTTAAAAGTTGAA
GTTGAACATTAACATAAGATGTATTATAAT	TGAGCTTCCTTGTTTATAGTTTTTTCCATGGTTGAA
GTTGAACATTAACATAAGATGTATTTAAAT	CTTTTAAAAATTTTGGTATCTGTTTGCTCTGCTGGC
GTTGAACATTAACATAAGATGTATTTAAAT	AGATGGAGTAACAATAGTTTCTTTTCCTACAAAATA
GTTGAACATTAACATAAGATGTATTTAAAT	TATATTATTCCTCCTTTAATTAAAGAAAATATTCA
GTTGAACATTAACATAAGATGTATTTAAAT	CTATCTTTATCTATCTCTTTCTCTTTCTCTAACTCT
GTTGAACATTAACATAAGATGTATTTAAAT	GTATCTGTTATCTTTTTTCTTATATTAATTTTA
GTTGAACATTAACATAAGATGTATTTAAAT	TTTTGGTTACCTCCACTATTTTCTTTATATCTAAT
GTTGAACATTAACATAAGATGTATTTAAAT	AAACTTAAACAAAATGATTGAATGTGAAGAAGAAAT
GTTGAACATTAACATAAGATGTATTTAAAT	TTTATACGAGATCTTGTATATGGAATTTTGTAACTT
GTTGAACATTAACATAAGATGTATTTAAAT	GTAAAACTTTTTACCAACATCAAATATCCACTTTCA
GTTGAACATTAACATAAGATGTATTTAAAT	ATTTCATATGTTTCCCCATAATCAGCTAAGACTTT
GTTGAACATTAACATAAGATGTATTTAAAT	CTAAAGTATATATTAACATCTCTATCGTTAAAATT
GTTGAACATTAACATAAGATGTATTTAAAT	AATCTTTTGAATTATTGAATATAAACCCTAGATCATC
GTTGAACATTAACATAAGATGTATTTAAAT	CAGCCACACGATAATAACTTTTTAAATCTAAGTCC
GTTGAACATTAACATAAGATGTATTTAAAT	TCGGCAGTAATGCTAGAGAAATAATTCTACTAACTG
GTTGAACATTAACATAAGATGTATTTAAAT	CAAAATGACAGTCTTATAGCATTATTTATTGGAATTAT
GTTGAACATTAACATAAGATGTATTTAAAT	AATTAACTATTAGACAAATTAAATTCGTAAACAA
GTTGAACATTAACATAAGATGTATTTAAAT	TTCCTGCTGTTGTTGTAGTTTGCTGGCATCTTGC
GTTGAACATTAACATAAGATGTATTTAAAT	AACTTTTATTAAGTAAATTACATGTTACACTTTAC
GTTGAACATTAACATAAGATGTATTTAAAT	TTTAATAGAAGGAGTGATTAAATGAGGTTATACA
GTTGAACATTAACATAAGATGTATTTAAAT	ATTTCCTCTAATGCGTTTTTAAATGTAGAATTTAT
GTTGAACATTAACATAAGATGTATTTAAAT	GTGTTAAAAACAATTTTATCTTCATCTATTACAA
GTTGAACATTAACATAAGATGTATTTAAAT	CACTTTGAATATGAGCAAGGTTCTCATGATGCTGTTG
GTTGAACATTAACATAAGATGTATTTAAAT	TTCACTTTCACAAATTTCACCTCTGTTCATATTTCT
GTTGAACATTAACATAAGATGTATTTAAAT	CCGGTTCCAGATTTAAAATCAATTGAACCTAGTTTAA
GTTGAACATTAATATAAGATGTAGGTTGTT

>CP029458|2|1|1398554-1400542|CRT
GTTGAACATTAACATAAGATGTATT	CTTCACCCTTACCCCCAGCATAAGCAATATTTTGTTGAA
GTTGAACATTAACATAAGATGTATT	GAAGATGAATTTATAGTTTACAGGTATGATAGAAAAGTTGAA
GTTGAACATTAACATAAGATGTATT	CCTCACACTGTTATAACTTTGTATAACTTATTTATGTTGAA
GTTGAACATTAACATAAGATGTATT	TTTTACTTGATACAGGATACATCGTATAATCCGGGTTGAA
GTTGAACATTAACATAAGATGTATG	TTGAAACCTAAAAATTATGAAGCTCCAGTTAAAAGTTGAA
GTTGAACATTAACATAAGATGTATT	ATAATTGAGCTTCCTTGTTTATAGTTTTTTCCATGGTTGAA
GTTGAACATTAACATAAGATGTATT	TAAATCTTTTAAAAATTTTGGTATCTGTTTGCTCTGCTGGC
GTTGAACATTAACATAAGATGTATT	TAAATAGATGGAGTAACAATAGTTTCTTTTCCTACAAAATA
GTTGAACATTAACATAAGATGTATT	TAAATTATATTATTCCTCCTTTAATTAAAGAAAATATTCA
GTTGAACATTAACATAAGATGTATT	TAAATCTATCTTTATCTATCTCTTTCTCTTTCTCTAACTCT
GTTGAACATTAACATAAGATGTATT	TAAATGTATCTGTTATCTTTTTTCTTATATTAATTTTA
GTTGAACATTAACATAAGATGTATT	TAAATTTTTGGTTACCTCCACTATTTTCTTTATATCTAAT
GTTGAACATTAACATAAGATGTATT	TAAATAAACTTAAACAAAATGATTGAATGTGAAGAAGAAAT
GTTGAACATTAACATAAGATGTATT	TAAATTTTATACGAGATCTTGTATATGGAATTTTGTAACTT
GTTGAACATTAACATAAGATGTATT	TAAATGTAAAACTTTTTACCAACATCAAATATCCACTTTCA
GTTGAACATTAACATAAGATGTATT	TAAATATTTCATATGTTTCCCCATAATCAGCTAAGACTTT
GTTGAACATTAACATAAGATGTATT	TAAATCTAAAGTATATATTAACATCTCTATCGTTAAAATT
GTTGAACATTAACATAAGATGTATT	TAAATAATCTTTTGAATTATTGAATATAAACCCTAGATCATC
GTTGAACATTAACATAAGATGTATT	TAAATCAGCCACACGATAATAACTTTTTAAATCTAAGTCC
GTTGAACATTAACATAAGATGTATT	TAAATTCGGCAGTAATGCTAGAGAAATAATTCTACTAACTG
GTTGAACATTAACATAAGATGTATT	TAAATCAAAATGACAGTCTTATAGCATTATTTATTGGAATTAT
GTTGAACATTAACATAAGATGTATT	TAAATAATTAACTATTAGACAAATTAAATTCGTAAACAA
GTTGAACATTAACATAAGATGTATT	TAAATTTCCTGCTGTTGTTGTAGTTTGCTGGCATCTTGC
GTTGAACATTAACATAAGATGTATT	TAAATAACTTTTATTAAGTAAATTACATGTTACACTTTAC
GTTGAACATTAACATAAGATGTATT	TAAATTTTAATAGAAGGAGTGATTAAATGAGGTTATACA
GTTGAACATTAACATAAGATGTATT	TAAATATTTCCTCTAATGCGTTTTTAAATGTAGAATTTAT
GTTGAACATTAACATAAGATGTATT	TAAATGTGTTAAAAACAATTTTATCTTCATCTATTACAA
GTTGAACATTAACATAAGATGTATT	TAAATCACTTTGAATATGAGCAAGGTTCTCATGATGCTGTTG
GTTGAACATTAACATAAGATGTATT	TAAATTTCACTTTCACAAATTTCACCTCTGTTCATATTTCT
GTTGAACATTAACATAAGATGTATT	TAAATCCGGTTCCAGATTTAAAATCAATTGAACCTAGTTTAA
GTTGAACATTAATATAAGATGTAGG

>CP029458|2|2|1398947-1400480|PILER-CR
	CTTCACCCTTACCCCCAGCATAAGCAATATTTT
GTTGAAGTTGAACATTAACATAAGATGTATT	GAAGATGAATTTATAGTTTACAGGTATGATAGAAAA
GTTGAAGTTGAACATTAACATAAGATGTATT	CCTCACACTGTTATAACTTTGTATAACTTATTTAT
GTTGAAGTTGAACATTAACATAAGATGTATT	TTTTACTTGATACAGGATACATCGTATAATCCGG
GTTGAAGTTGAACATTAACATAAGATGTATGTTGAAACCTAAAAATTATGAAGCTCCAGTTAAAAGTTGAAGTTGAACATTAACATAAGATGTATTATAATTGAGCTTCCTTGTTTATAGTTTTTTCCATGGTTGAAGTTGAACATTAACATAAGATGTATTTAAAT	CTTTTAAAAATTTTGGTATCTGTTTGCTCTGCTGGC
GTTGAACATTAACATAAGATGTATTTAAAT	AGATGGAGTAACAATAGTTTCTTTTCCTACAAAATA
GTTGAACATTAACATAAGATGTATTTAAAT	TATATTATTCCTCCTTTAATTAAAGAAAATATTCA
GTTGAACATTAACATAAGATGTATTTAAAT	CTATCTTTATCTATCTCTTTCTCTTTCTCTAACTCT
GTTGAACATTAACATAAGATGTATTTAAAT	GTATCTGTTATCTTTTTTCTTATATTAATTTTA
GTTGAACATTAACATAAGATGTATTTAAAT	TTTTGGTTACCTCCACTATTTTCTTTATATCTAAT
GTTGAACATTAACATAAGATGTATTTAAAT	AAACTTAAACAAAATGATTGAATGTGAAGAAGAAAT
GTTGAACATTAACATAAGATGTATTTAAAT	TTTATACGAGATCTTGTATATGGAATTTTGTAACTT
GTTGAACATTAACATAAGATGTATTTAAAT	GTAAAACTTTTTACCAACATCAAATATCCACTTTCA
GTTGAACATTAACATAAGATGTATTTAAAT	ATTTCATATGTTTCCCCATAATCAGCTAAGACTTT
GTTGAACATTAACATAAGATGTATTTAAAT	CTAAAGTATATATTAACATCTCTATCGTTAAAATT
GTTGAACATTAACATAAGATGTATTTAAAT	AATCTTTTGAATTATTGAATATAAACCCTAGATCATC
GTTGAACATTAACATAAGATGTATTTAAAT	CAGCCACACGATAATAACTTTTTAAATCTAAGTCC
GTTGAACATTAACATAAGATGTATTTAAAT	TCGGCAGTAATGCTAGAGAAATAATTCTACTAACTG
GTTGAACATTAACATAAGATGTATTTAAAT	CAAAATGACAGTCTTATAGCATTATTTATTGGAATTAT
GTTGAACATTAACATAAGATGTATTTAAAT	AATTAACTATTAGACAAATTAAATTCGTAAACAA
GTTGAACATTAACATAAGATGTATTTAAAT	TTCCTGCTGTTGTTGTAGTTTGCTGGCATCTTGC
GTTGAACATTAACATAAGATGTATTTAAAT	AACTTTTATTAAGTAAATTACATGTTACACTTTAC
GTTGAACATTAACATAAGATGTATTTAAAT	TTTAATAGAAGGAGTGATTAAATGAGGTTATACA
GTTGAACATTAACATAAGATGTATTTAAAT	ATTTCCTCTAATGCGTTTTTAAATGTAGAATTTAT
GTTGAACATTAACATAAGATGTATTTAAAT	GTGTTAAAAACAATTTTATCTTCATCTATTACAA
GTTGAACATTAACATAAGATGTATTTAAAT	CACTTTGAATATGAGCAAGGTTCTCATGATGCTGTTG
GTTGAACATTAACATAAGATGTATTTAAAT	TTCACTTTCACAAATTTCACCTCTGTTCATATTTCT
GTTGAACATTAACATAAGATGTATTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP029458.1\|AYF54390.1\|1387932_1389651_+\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|274208
CP029458.1\|AYF54391.1\|1389699_1391985_+\|CRISPR-associated-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
CP029458.1\|AYF54401.1\|1409173_1410172_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
CP029458.1\|AYF54387.1\|1383350_1385408_+\|multifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase	unknown	unknown	gnl\|CDD\|236505
CP029458.1\|AYF55226.1\|1401729_1402398_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
CP029458.1\|AYF54388.1\|1385481_1386663_+\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|377940
CP029458.1\|AYF54402.1\|1410171_1410459_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP029458.1\|AYF54400.1\|1408667_1409162_+\|Dna2/Cas4-domain-containing-protein	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP029458.1\|AYF54404.1\|1414254_1415409_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341473
CP029458.1\|AYF55227.1\|1402660_1404193_+\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
CP029458.1\|AYF54393.1\|1393404_1393803_+\|hypothetical-protein	csx19	mkCas0132_csx19_CAS-III-D	unknown
CP029458.1\|AYF54397.1\|1404195_1405194_+\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP029458.1\|AYF54398.1\|1405196_1405958_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
CP029458.1\|AYF54396.1\|1397672_1398365_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP029458.1\|AYF54395.1\|1396005_1397646_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380122
CP029458.1\|AYF54389.1\|1386757_1387747_+\|hypothetical-protein	unknown	unknown	unknown
CP029458.1\|AYF54403.1\|1413166_1413931_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
CP029458.1\|AYF54394.1\|1393804_1395970_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
CP029458.1\|AYF54399.1\|1406025_1408659_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350688
CP029458.1\|AYF54392.1\|1391977_1393393_+\|CRISPR-associated-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|187857

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP029458.1\|AYF54390.1\|1387932_1389651_+\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	2.1e-74	245.7	5.3
CP029458.1\|AYF54391.1\|1389699_1391985_+\|CRISPR-associated-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	7.4e-40	131.4	0.0
CP029458.1\|AYF54401.1\|1409173_1410172_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1.4e-126	416.7	15.1
CP029458.1\|AYF55226.1\|1401729_1402398_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	3.6e-19	64.6	9.7
CP029458.1\|AYF54402.1\|1410171_1410459_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	8.3e-27	88.0	0.6
CP029458.1\|AYF54400.1\|1408667_1409162_+\|Dna2/Cas4-domain-containing-protein	cas4	pfam01930_cas4_CAS-I	7.5e-45	147.7	11.5
CP029458.1\|AYF55227.1\|1402660_1404193_+\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	cas8b1	mkCas0106_cas8b1_CAS-I-B	4.8e-176	581.7	66.7
CP029458.1\|AYF54393.1\|1393404_1393803_+\|hypothetical-protein	csx19	mkCas0132_csx19_CAS-III-D	5.9e-49	160.4	13.7
CP029458.1\|AYF54397.1\|1404195_1405194_+\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	6e-28	92.8	1.2
CP029458.1\|AYF54398.1\|1405196_1405958_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	4.6e-61	201.1	6.1
CP029458.1\|AYF54394.1\|1393804_1395970_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	2.6e-100	331.9	45.5
CP029458.1\|AYF54399.1\|1406025_1408659_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	1e-38	128.0	6.9
CP029458.1\|AYF54392.1\|1391977_1393393_+\|CRISPR-associated-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	3.7e-25	84.1	17.1

Protein	Function_ID	Function_description	E-value
CP029458.1\|AYF54390.1\|1387932_1389651_+\|hypothetical-protein	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	0.00035858
CP029458.1\|AYF54391.1\|1389699_1391985_+\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	5.81819e-09
CP029458.1\|AYF54401.1\|1409173_1410172_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.92127e-148
CP029458.1\|AYF54387.1\|1383350_1385408_+\|multifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase	gnl\|CDD\|236505	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase.	1.91019e-145
CP029458.1\|AYF55226.1\|1401729_1402398_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	6.24089e-11
CP029458.1\|AYF54388.1\|1385481_1386663_+\|YibE/F-family-protein	gnl\|CDD\|377940	pfam07907, YibE_F, YibE/F-like protein. The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE and YibF. Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.	1.13883e-92
CP029458.1\|AYF54402.1\|1410171_1410459_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.45191e-25
CP029458.1\|AYF54400.1\|1408667_1409162_+\|Dna2/Cas4-domain-containing-protein	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.56421e-51
CP029458.1\|AYF54404.1\|1414254_1415409_+\|alcohol-dehydrogenase	gnl\|CDD\|341473	cd08194, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains iron-containing alcohol dehydrogenase (Fe-ADH) most of which have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. It is distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.	0
CP029458.1\|AYF55227.1\|1402660_1404193_+\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	3.1923e-36
CP029458.1\|AYF54403.1\|1413166_1413931_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.15848e-88
CP029458.1\|AYF54397.1\|1404195_1405194_+\|CRISPR-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.44447e-48
CP029458.1\|AYF54398.1\|1405196_1405958_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.36704e-61
CP029458.1\|AYF54396.1\|1397672_1398365_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	0.000615808
CP029458.1\|AYF54395.1\|1396005_1397646_+\|hypothetical-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	3.1195e-10
CP029458.1\|AYF54394.1\|1393804_1395970_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.392e-54
CP029458.1\|AYF54399.1\|1406025_1408659_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.4196e-26
CP029458.1\|AYF54392.1\|1391977_1393393_+\|CRISPR-associated-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	5.31093e-09

>CP029458.1|AYF54396.1|1397672_1398365_+|hypothetical-protein
MDFYELRITLNLKKDIHCDYITERLSVLFNKAMIYSEYLKSIHKVNMYKLYTFEGLSPFEKDKVYKRGRYYMTRFRCIDKFVAEEFKKCLKQTKTNEFDILAVDIDIVTPKYIKILFNVTPAIAIINNEPWTDKMNIDLLKKSINENLIKKIKFIQDIDETLELDMIKCIKLKNRMPIGCKYKHIKLLGNKFEIEIKDDDISQFMANIALAVGILEKNSLGYGYCLYKSK
>CP029458.1|AYF54395.1|1396005_1397646_+|hypothetical-protein
MDICDENYYKQIINIIEKHKKDNSAEATIKGFLYQFLVTLDKWIEMYRQKKFFEIYPEDCDDIKIKSENKIQYIQVKAYDSINFTLNHDRFIKSVENFWELYIYNNMKPNIQFIFHTNSKPGNKAYLMKRWIEGNLTNSEKEEIYLNIKEKLNKTIEQKFKEDKYKKTIKENIKNESLRFIDSIKLVFEETTVDNSKERLEHNILNNIKLINGCYKCKNIFYRLLIEVIEKSIKKNCKDKKLDNELLSSILHDSEENIIMKIEEKLDDMKNDINTMSNKHSAEHKEIKEEIKKIANKETHYIEEDTLNVIVSSRHQLGQKAYTLDLTEFFKYGEGYSCYKYIKSYNIWNNELLKKINVFFNNLIKEQNNQKHSILLDGIHYSIAFYIGYKYGKALRNPYLKRENEVYKFKSINTDNNYKIYDNKTLLKDTKDVVVIINTSRDSESIKDEVKDFINKSNINRFSIINLTLGERNDNGSVDKNNFYYIASQMAKLIQKYVNKDQTIHLFSITTVEEIFAIGRLLFDMKNIILYEHVGEEKIYMPTIRL
>CP029458.1|AYF54394.1|1393804_1395970_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MGKDKNNKDFKYASAPYNFIPFPEKIVYRHKFEDAILNHEQLYKKLETKTGYIDYSIEVKTPLFIGNGEGEFFKVDGEEVIPGSTVRGKIRSNCEILASSYPEFVEDKKLWYRGAFSKDVLNKMYKEEILSGENGKINEKVKAGYLIRQGSKWFITPAQTHNDKYFKEIHESKLRDVYHVIDKNINKSIFMYKRYDSEDKSLLWNKFSEMKKEKKSINKEINKLKIQLQEKYNKSDDEIKELKKEIKTLESKKIYIKKDMERLLKNNEVRTFKPYYYRALYDNDTLKIKKVMESVQDKEYGFLMNSARLNSKQNHYLIFKKDITKNKIEITKELISQYKTSVKCKQSKPVEKFELDEEKDFYENKEKPIFYLSDEEGNITSFGFTPYLKISYKKGVQDGIKTKQENIKETNKGRIDYVKGIFGFENVKINNNLVSYKGRVSFTNARCKVCSNIQKPILKHLMNPKISSFQLYLKQDVNDLKILKTYSSKNFELRGQKIYWLRNESDSSDDYKSDKAIYEKENKKTPDEKQYAKLSPIDKGTVFNGRIYFENLDEDELGLLLMAIKPFKDAKENLGQGKPYGFGKVEFKIENLKEVDNENRFKGLNLQFLNSKDLDYKIQKYINKFIDIMNSEYHMDFSKDDRIRAFKSSKLEEKSISYSEFNYMDIKEFKDRKILKDMNSYIDYEFISAEKYVAAGKDDEFDKKTMAKRLGGKFRVTNRRR
>CP029458.1|AYF54393.1|1393404_1393803_+|hypothetical-protein
MNYINKNEVIKLIDNNEYKYLWVNTYSDIYLKDIHNEKVNFFNDDLDNLIEAKLFNNEKELSIMPGNKEGMFSVVKFNPDEYEDFIEEKQVLNKYKLKHEINKLIIRHYLKYDEDGQAYVAYTKLCRVEGEK
>CP029458.1|AYF54392.1|1391977_1393393_+|CRISPR-associated-protein
MSNVNKIRKYKVVVKNISPLKIGNGEDEGFQLVLQDNKACISGTTMAGVFREFLINNKDIKKDSDIYKKIYSDSNEISTIFFYDSFSEQDIKENDIECRPHIRIDEKTGTAVQGALFSECHVNEGKKFEITFEIKGLEINEEQYERICDYLEEFLYLLGNGKKSIGSKSTFGFGLMQFDREDSCYFKEFDLINEQDLEDYLNDISIYNIKNKVKFNDYTREKHTSITFKAYCEDGLIIKGDKEKICVNDKYFYKNISYREMKIKGKDNEEDYKYVIPSSTIKGIVHSYSRKILLTLEKDLEILKYIFGEKTNERETKKGKRGNLVFYDYKISKDRFKESEKNQPIYNRIKIDRFTGGTFQGSLFKDQVIIFNENTKELEFKISISNRLKNVEALKNNRLFEKAIALIILTFRDMGFGYVTVGSGNNVGFGRLQGNSILIDENEHKYEAKFQNDKLVGDIEKFEKYIKILNE
>CP029458.1|AYF54391.1|1389699_1391985_+|CRISPR-associated-protein
MIKYPVEIKLLSETTFGSGESKNGNVNTDILLDNEGLPYFLGKTFKGCLRKSIEDILKPFYCKSGKNFSQIIKDLFGRGNYKKDPKTKEEKESIEYQRDGKLKFSNFYLHKDILDIFDKGNKDEILDVLTDVRFSIKMNEELGVADKGSLRAIRVLKKDLVFVGFIECENKLADNEFEILKRGILSLKNLGVNKSRGKGHVEVSIGEEINVNNVNENKISADCNYLFYEIDLKEPVKIGDSSSKYDYEESKLYITGSAIRGAIIKKYLAKEILDLDILKKVIFSDSYPIFFDGKKRYSFPTPNIFVISKDTDKSDQLIYTKEKFSNLLDELQGEEQENNKERRVTKLKKGSFSYYVKDESGDKKTLYQFDVKKDFKFHHTKVTDEENIFIYEAISKNQQFYGVIDMSKLDSENKKKIINVLKTLSVIYLGGSRTGGYGRTEITSVESIKDFKELKRKLNYLNYGQSTKEINDIYLLSDVILRDKNHQIISNFSEEYLKEILDDSTIEILSSQINPTIIKGFNSKWKSQIPQSYAMEKGSVIRIKGNLDNTKIDKFMNKYHGDKVQDGLGRVIINPVFLDVDNIEYKEYESKVLKGKDNIEYNSVNIETIEKLKESKEEKYSDKKIKEYISKNIYEEPVDGLSLSQINNVIYEIDKCIIYEKNKKQYLDKLKEISTNKNKTENNRNILDIKIYKNISFEDVLNDNIRKDISNLLQKVFDENVSIINKIDKDKILLKISRWKLYYITKLIKLKNFQKEGDNNE
>CP029458.1|AYF54390.1|1387932_1389651_+|hypothetical-protein
MTKNSSVYYLVKIDIGSKQKYIFSTNVLKDIIGASEIIRFITEELGQTVLDYMNKFNICRSKFSKEAFNGIRGNVLIEAGGNSIYIFKEKEHAIKFNKIFSKFVMKYFDGIELLMVIQEFNIEKQIKLEESPSIKYALDNIERKLTIKKGERKNLFKRISYGLTRICANTQKPAGYSDNNKERFISKESYDKQRFYKKLYDNDKNGLNEYYIDDENKFICKIKKGKYSGNIKDTEFYYTTEVDELAGDIDSKSYVGITCVDGNGMGEKINSFYKDYRYCKEKSIKENNLKWIRKYRDLTQKIKDNYEEAFNTTINVLCKNYDKYREAIFKDDKKIVPIRPIILAGDDITFISNGKIAIEATKIFAENITEKVVKFGEKNSNLTVSCGVAIVRKKYPFSRAVKLAGELEKSSKKKLKKVKEIYKNNNCKINDIDASFIDWYIDRGNILEGINEIRNKENLELTARPYMISINNVNNNFKKLDNFIGLGNNKNIFCYKFNYFYKVLDIVKGLNKNSNLKEFYRTMNKSEVNANLFSIKYLINKDFKINGLQEENMRQVIYDVIECLDLYKEVEK
>CP029458.1|AYF54389.1|1386757_1387747_+|hypothetical-protein
MNQENLIENGIRYICNSNYQYFLRKKNVQGIGLGYKKINGKCTFRKCISVFVSKKLSSNNIAREDLIPSYFNCIPTDVVETGIFTTCALNQKIRPVQCGYSIGPVGVGIYGTLGCLVRNRREKAIYILSASHALNPLGKVSFGTPVVQPGVLDGGSIRNDVISNLIRSTTIQYMGTFSKPVNTVDAAIAKVSNISMVSTTMAIVGKDLKQMAPPKIGEKVFKVGRTTGFTEGHITETNVTQVINSSGKKALFKEQIAADVKSDVGDSGSVLLNLNMNPVGLLMGTSQSMVYSVFNDMKNVISALNVEVITRPEMDNIKRMYSWRNNICV
>CP029458.1|AYF54388.1|1385481_1386663_+|YibE/F-family-protein
MKKSKKLHIVLIMMFIFSIFFTFNCFAEENNSKNLQEYYSKQMDKPNYVTVKAKIIDITFDDTKENKKDIPIESDIRYQHLKIKLISGKHKGEVYTVRNTVEMISPYKLIFEKGDKLLLHLTEGTGNKVVNLKVYERSREGVIYFVVALFMILLVAIGGKKGLKSAITLIFMGLLIVFVLLPLIRRGYNPILVSIFISVLSVVFTMTLVSGANKKTLTAILGTIGGVIIAGIIAMIVGNIAMLTGVGNEDAQMLAYIPQNKYINFKGLLYGGIIIGALGAIMDVTMSVSSAMWEIKEIKPKIKTNELIKSGMNIGKDIMGSMSNTLILAYAGGSIYIMLLFSMFKMDPLEIINLEPIASEIIRAMAGSIGLICAIPLTVIISASLAKNYYKKR
>CP029458.1|AYF54387.1|1383350_1385408_+|multifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase
MNKIFKRSKGKKIVSFFVVMAMIFSMTTQLAFATSNSENVINTNMNTLTKEANVSNDKSINIIMFNDFHGNLAEDVRETGKNIGMAKMVGYAKEAVSKNPNTIIVSGGDNYQGTAMSNLTYGAPVSAMMKAMNVTASAVGNHEFDWGVSHMEKWQKDGGFNFLAANIYDSKTNNPVSWSKPYKIVEKGGIKVAFIGLAHPNTTTLTKRENVTGLEFRDPVKTAEEWIKYLKEGKAKEGIPDVIVALTHIDSYQDANTKEITGKAVDLTKVKGLDAIVSAHSHRRVIGIINGKPIIQAYKYGRAIGIMSIKLDKDNKVSKIVPKIDDVCNTKSDIISDKESTETYNKYDKDLKPILGEKIGQATEEFTHDRTKSNVSLLGKWSCEVMQKKTGAQIAIQNGGGLRRTLYKGDITMGDMYEIMPFDNALVTFDLKGADVKKAIDHGILNPEVTDGQFSGLKVEYDKNKEFEHRITKITLNDGTPLDMNKYYKVTAPDFLLSGGDKYDFSNAKNVVETFIPVRDVLVEAIKDAKIITPKEVDYIKECEVKPELKPEVKPEVKPVPKPVPKPEVKPQVKPDPNVRAVYFVKSGDTLKYIARTYGVSWRELVKFNKLDNPNMIFPGQKILIPVEGAKENSNIKDTYVVKRYDTLKKIGNMYGISWRRIAKFNKLNNPNMIFENQKILIPAY
>CP029458.1|AYF55226.1|1401729_1402398_+|CRISPR-associated-endoribonuclease-Cas6
MVDVYTMEDIKVNKQSIKISKLIDKTLCMNDKFLKLHKENCFKNYCFNWLYPIETDVYKKGKIYTFIIRTVDKELVEYFKKYLINEYTESLKVLTIKTKLIPQCPIEKIYSITPLIIKAQGYWKNNLTFKQFEERIFSNLIKKYNEYFNIKINENFSLYNNIVISNKKPISMPVKGVRLLGDKVTLYISNNEMSQKLAYFALGVGLGEVNGRSAGFCNYKYL
>CP029458.1|AYF55227.1|1402660_1404193_+|type-I-B-CRISPR-associated-protein-Cas8b/Csh1
MNKPIDSKKVIHSNNYLSFFVKLDSISGGKLTNEIIHNYYEVLRNPQDKYKKDKNKLAMYEDAEKEFGKVNEERLNKIEEWIINNIYNLVPKDSKEKTYLKIFFKYDLSEYEKESKKYLIPNIYNSTDFNISINDTLYGLPNNNMGLNSKKPYLENKTRKTTVPFLISLKEVLIQKKLFDFLMNMATTGRVNIYLNEKEIIALSNKESLKNNFQGAYIRIKKGKELEILDFDIIENYKVKLKQPMKVKNILQINYEKLSKKLPDYYHEIKLVENLKIFINEILFSKFLDSNYFTEAKDLSINNSNLKMNLLLSRNILFNWFFKGNQQGVWEVLNKTSLSLIKGSINNGYMIRASEQFNLRCALKEYFKGDEKSMADVLKEVKDSLRKKINIKFDEATSSIENDDEYYFAVGQLAGYFISLNKSKNKPHSLANPVINARNDKRIKDELIKLYKKYNYAIPYTKGRFENLMAIVKSYEPKEKVKDDLIIAGYLHSNLIFEKTEDSKNENGGN
>CP029458.1|AYF54397.1|1404195_1405194_+|CRISPR-associated-protein
MMNKRIYGLLGIASIMANWNADFTGYPKTISTGEIFGSDKAFKYPIKKMWNQQGEKVLYIKSMKLEEDKNGISDLTPRSLKERYEYLFENNKVSDNKEGKTDKKSKKDGKEVLTNLFKAIDVKNFGATFAEEGNNISITGAVQIGQGFNKYEESYAEEQQILSPFRDASQKKKSKKENEEKEDAKASTLGTKIVSNEAHYFYPFAINPTAYDEFVELGVTDGYTEEDYKKFKDASLIAATSFNTNSKVGCENEFALFVETDKELYLPNLSQFVEFEKKDDKGVIKLTCGKLLDGLKDKIKSIEIYYNPYTTILDSDIKDAKKFNIFTKKEEV
>CP029458.1|AYF54398.1|1405196_1405958_+|type-I-B-CRISPR-associated-protein-Cas5
MEVLKFNLKGETAFFKRPDVNTYLYFTYGNIHKVALLGILGAIMGYKGYNNQCNKIYKHEKEQCIYPEFYEKLKGLKVGIVPINHHGYNLKKVQTFNNSVGYASKEQGGNLIVKEQWLEKPKWEIYILIENEITRELADRLKNYKFKYIPYLGKNDHIADIGFVEVIKNAEKIHSVDKLDGLFMKKYFTLNLDNEDEEEESIWKYEESLPISLEEVTNKYELETFLMTNAIVNIKDYDKVQIYKCNNKNIYFF
>CP029458.1|AYF54399.1|1406025_1408659_+|CRISPR-associated-helicase/endonuclease-Cas3
MYFEKTEKFDISKYIKNSEKIYAHINNKTREKETLKEHVERSLKYFYKLVYSKNLENIFLKFEEKLCREFSDEEKNLFREMIINTIYMHDLGKININFQRLKMHNKYWENHKEFEFNNSNHSCLSSLIYMDYYYKKIKSNSNLNSLESKKLLKIFMILNAYVISKHHTGLDKLEDFKVKLTEDDGEGQRLCSSELSLFEDIYNEKIKFTTNENILKNLFKNTEKNLRRYEEEENNISFVFYIYERLMLSILLMCDYYATSEFEHGDEVKGFNEIENIYDFYDEFNNTKINKDTREYEKNEYDTKRDFSNLKDINILRKELFLDAEKELLKNLDKNIFYLEAPTGSGKSNVAFNLTFRLIEKERNLKKLIYVYPFNTLVDQNIKTIEKIFNNKKDVLNNMAVINSITPIKIRKKDLDDNTIDYNTSLLDRQFLNYPMILTTHVSLFNYFFGISKEDIFPLAKLCNSVIVLDEIQSYKNYIWKEIITFLKYYSEFLNIKFIIMSATLPNLDILMDDESNSISLISNRDKYFDNKLFKNRVKIDYSLLDSADIEDSKDAKLEKIFNHVVEQSNNSEKNILIEFISKDTAAKFHEMLIEYKEEYGLGTQDVRDIELITGDDNSIERNKIINKITKEENKNIILVATQVIEAGVDIDMDIGYKDISMLDCDEQFLGRINRSCLKESGIVYFFNLDSASGIYKNDYRKPKQLTLISEKFHTRRWLENKEFYKFYKHVLEVINKNGTDKYKENSISNFVKNSMNKFDFINISERMKLIDDNKMECSVFLNRELELDDERVLKGYEIWDSYKELLQNNEIDYAEKKVKLSKVVSDMNYFIYKVRKGNFNITECIGEIYYIEDGEKYLENGKFIKSKFQGIDSDIC
>CP029458.1|AYF54400.1|1408667_1409162_+|Dna2/Cas4-domain-containing-protein
MRVNGTLVNYYIHCKRQCWLHGNRVNMENNSEDVKIGKAIHKIREEHGKNTEVSIENIKIDKITKEYLVEVKKSDSDIEAVRWQILFYLKILKDKGIDKKGKIEVIEKKKSNNKIIYEELTEEKEERLKEIIFNVEKLIGDENLPMVEFDNKCKKCAYYEYCYV
>CP029458.1|AYF54401.1|1409173_1410172_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSTKYLMSMGEVSRKDNSLCFRKNSKNQYIPIENVKEIYCLSEISLNTKLLDFISHNNIVMHFFNYYGGYSGTFYPKENLVSGRLLVKQVKAYENKRMDIARAIVLGIGENIHEVMYHYYKHNVNEVKELLDWIKTEFKSKLENVQDIKSLMQVEGEVWQRFYSNFKYILPENFIINKRVKRPPDNPINAMISFGNSMLYSKTVSVIYNTHLDQKISFLHEPSEGRFSLSLDLSEVFKPIITFKTIFELVNRKKIQVSKHFDKNLNYCILNEAGKKIFIEAFEGRLESIFEHPKLKRKISYKTAIKLDCYKLIKNILEEKEFKPFRLKDKI
>CP029458.1|AYF54402.1|1410171_1410459_+|CRISPR-associated-endonuclease-Cas2
MSKKINYNYAFLFYDVKEKRVNKVFKVCKKYLTHYQKSVFRGEITPSNIIKLREDLKKVIDESEDFICIIKLLNNKVFGEEVLGVGIETAEDLIL
>CP029458.1|AYF54403.1|1413166_1413931_-|DeoR/GlpR-transcriptional-regulator
MKSHRIKEIENYVLQNEHASLDTLCSLFNVSKNTIRRDITVLVNRGIVKKVYGGITLNNEKNLTVPFEQREVTHKDEKYLIAKYASKLVEDNDIIFIDSGTTTVHMIPFLTDRKNLTIITNNLNILLKALPYSNVDILSTGGTLFRETNSLIGVEASNFLKNYNISKAFMATTGFSIDKGVTNSSNFEYEVKKTVVENSSNVILLADHSKLDTASLKTYCKLEDITCFITDRIPPKEYVKFFEEHNINLITPDN
>CP029458.1|AYF54404.1|1414254_1415409_+|alcohol-dehydrogenase
MAHKVIVPKRIVYGKEALKDAGIYLKEFGKKALIVTDEIMVKIGNVSRLTDILNENNIKYAIYDKVNSEPTDVMVDKGIDIYISEKCDYLIGLGGGSSIDTMKAIGAMITNPGKLSDYMGKIIENCPPPLVAVPTTAGTGSEATQFTIISDTVNNVKMLLKGPNLLPQLAIVDAEMTMTAPKGVTAATGIDALTHAIESYTSRLAQPLSDTFALSAIKRIFNNLRKAYNEGNDFEARNQMSLGSLEAGIAFNNASVTIIHGMSRPIGALFHVPHGVSNAMLFVECLKFAIEGTPERFADIAKVIGSYKEGMTNIEAAKTVVDEIGKLCSDINIPTLKEFGIDKVKFFENIDKMAIDALESGSPSNTIKQPTKEEIIEIYKKLWS

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Crispr_ID: CP029458_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029458_3

1410643-1413099

TypeI-B

III-B

Consensus_repeat	Method
GTTGAACATTAACATAAGATGTATTTAAAT	PILER-CR
GTTGAACATTAACATAAGATGTATTTAAAT	CRISPRCasFinder
GTTGAACATTAACATAAGATGTATTTAAAT	CRT

37 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of CP029458_3

>merge|CP029458|3|1410643-1413099|PILER-CR,CRISPRCasFinder,CRT
GTTGAACATTAACATAAGATGTATTTAAATCGTTATCACCACTCCTTATATTAGTTTATCCATATATGTTGAACATTAACATAAGATGTATTTAAATATATACTATGTGGAATAGAGGAGATGTTGTATTAAGTTGAACATTAACATAAGATGTATTTAAATGAAGCAGCACAATATTTCTATGATGGTTTCTTAGGTTGTTGAACATTAACATAAGATGTATTTAAATTATCTAAAAAATAGATACACTCACTATGCATATCTTTGTTGAACATTAACATAAGATGTATTTAAATCTAGTTTGTATTACTTTAAGTCTGTTTATAGCACGTTGAACATTAACATAAGATGTATTTAAATAATTTATAATTATCATTTAGAACTGTTGTAATAATAGTTGAACATTAACATAAGATGTATTTAAATGAAGAAATAAGTTTAGATGATAAAAAGCTTTTAGAAGTTGAACATTAACATAAGATGTATTTAAATCTTTTAGTTTCTACATTGTCAATACTACTTTCCCAAGTTGAACATTAACATAAGATGTATTTAAATAGTTTTTTTGCTTTGTTTTCTATAATTTTATCCTGGTTGAACATTAACATAAGATGTATTTAAATTAATAATACTGTGTAATTATATCTACTCCAGATTTGTTGAACATTAACATAAGATGTATTTAAATTTTATTTCATTTGATATACATAAATTATTTATAGCGTTGAACATTAACATAAGATGTATTTAAATATTTGTAGGTAAAAATAAAAGAACTTCTCTAGTAACGTTGAACATTAACATAAGATGTATTTAAATAGTGATAATAAATGGCTTATATTTGTAAGCAATAAGTTGAACATTAACATAAGATGTATTTAAATTAACCAGCAACAGTTGGTCTACTCTTATTAAGCAGGTGTTGAACATTAACATAAGATGTATTTAAATTAAAGATACGAGGTTAAGAAAATATAAAGAAGCATGTTGAACATTAACATAAGATGTATTTAAATTACCAAACTTTATTTTTCTTTTTATCTGCTTTTAAGTTGAACATTAACATAAGATGTATTTAAATACGTATTGTTTTTGTTGTAAATCTCTCGCATCTGTGTTGAACATTAACATAAGATGTATTTAAATTATTTAACTAACAACCTAACACATAAAAGTTAAGTTGAACATTAACATAAGATGTATTTAAATCGTTTACGGCAAATAGAATCTATATATTCTAAAGAAGTTGAACATTAACATAAGATGTATTTAAATGAAAAATATAGCTAATAGAATAGGTACTGTAAACAGTTGAACATTAACATAAGATGTATTTAAATGTATTTTCTTTTATAGAATTAAGTAAATTACCAGCAGTTGAACATTAACATAAGATGTATTTAAATAAATTTAAAATATAAGAAGGTAATCCCATTAGTTATGTTGAACATTAACATAAGATGTATTTAAATTATTTAAATGTACCACTAGAATTCACATCCCCTACATGTTGAACATTAACATAAGATGTATTTAAATCTAGCATTAGAGTTGTTTATTTTTATATCAAATATAGTTGAACATTAACATAAGATGTATTTAAATTCTTATTCTCTAATAAATTAACTTTAGATTCTATGTTGAACATTAACATAAGATGTATTTAAATGCAGGTAATGTGTGTGGCAGTATATCTCCCTCTGCGTTGAACATTAACATAAGATGTATTTAAATAGCAAAAACATGAGTATAAATAATGTATTTGATAGAAGTTGAACATTAACATAAGATGTATTTAAATTATATTACTAATTCTTCTTCTATAGTAAAGCTATATTGTTGAACATTAACATAAGATGTATTTAAATTATATTTTAAATTCATCACAATTACAGTTATAACATTGTTGAACATTAACATAAGATGTATTTAAATATATCTTACAGGTCCTAAAACCCTTCCAGTTTTTAGTTGAACATTAACATAAGATGTATTTAAATTTATAACTTCCTTCTGTAACTAATTTATATTTTAATGTTGAACATTAACATAAGATGTATTTAAATTTTAATGCACCATTGGAACTGTTAACTGCTTTTTTAGTTGAACATTAACATAAGATGTATTTAAATTATATAAAGCCTACCCTTCGTGGTGGGAAAAAAGTTGTTGAACATTAACATAAGATGTATTTAAATTTATATGTTAATTCCATTTATACCTCCTAGAATTTGTTGAACATTAACATAAGATGTATTTAAATAGGGTAATGGCTGGGTAGGTATAGGCTATCATTTGTTGAACATTAACATAAGATGTATTTAAATTCTATTCTGGAAGGTATTTGTTCTCTATCTTCCTTGTTGAACATTAACATAAGATGTATTTAAATTCTTGTTCACACATTATTTTTAGTAACCCTTTATCGTTGAACATTAACATAAGATGTATCTTAAG

>CP029458|3|3|1410643-1413034|PILER-CR
GTTGAACATTAACATAAGATGTATTTAAAT	CGTTATCACCACTCCTTATATTAGTTTATCCATATAT
GTTGAACATTAACATAAGATGTATTTAAAT	ATATACTATGTGGAATAGAGGAGATGTTGTATTAA
GTTGAACATTAACATAAGATGTATTTAAAT	GAAGCAGCACAATATTTCTATGATGGTTTCTTAGGTT
GTTGAACATTAACATAAGATGTATTTAAAT	TATCTAAAAAATAGATACACTCACTATGCATATCTTT
GTTGAACATTAACATAAGATGTATTTAAAT	CTAGTTTGTATTACTTTAAGTCTGTTTATAGCAC
GTTGAACATTAACATAAGATGTATTTAAAT	AATTTATAATTATCATTTAGAACTGTTGTAATAATA
GTTGAACATTAACATAAGATGTATTTAAAT	GAAGAAATAAGTTTAGATGATAAAAAGCTTTTAGAA
GTTGAACATTAACATAAGATGTATTTAAAT	CTTTTAGTTTCTACATTGTCAATACTACTTTCCCAA
GTTGAACATTAACATAAGATGTATTTAAAT	AGTTTTTTTGCTTTGTTTTCTATAATTTTATCCTG
GTTGAACATTAACATAAGATGTATTTAAAT	TAATAATACTGTGTAATTATATCTACTCCAGATTT
GTTGAACATTAACATAAGATGTATTTAAAT	TTTATTTCATTTGATATACATAAATTATTTATAGC
GTTGAACATTAACATAAGATGTATTTAAAT	ATTTGTAGGTAAAAATAAAAGAACTTCTCTAGTAAC
GTTGAACATTAACATAAGATGTATTTAAAT	AGTGATAATAAATGGCTTATATTTGTAAGCAATAA
GTTGAACATTAACATAAGATGTATTTAAAT	TAACCAGCAACAGTTGGTCTACTCTTATTAAGCAGGT
GTTGAACATTAACATAAGATGTATTTAAAT	TAAAGATACGAGGTTAAGAAAATATAAAGAAGCAT
GTTGAACATTAACATAAGATGTATTTAAAT	TACCAAACTTTATTTTTCTTTTTATCTGCTTTTAA
GTTGAACATTAACATAAGATGTATTTAAAT	ACGTATTGTTTTTGTTGTAAATCTCTCGCATCTGT
GTTGAACATTAACATAAGATGTATTTAAAT	TATTTAACTAACAACCTAACACATAAAAGTTAA
GTTGAACATTAACATAAGATGTATTTAAAT	CGTTTACGGCAAATAGAATCTATATATTCTAAAGAA
GTTGAACATTAACATAAGATGTATTTAAAT	GAAAAATATAGCTAATAGAATAGGTACTGTAAACA
GTTGAACATTAACATAAGATGTATTTAAAT	GTATTTTCTTTTATAGAATTAAGTAAATTACCAGCA
GTTGAACATTAACATAAGATGTATTTAAAT	AAATTTAAAATATAAGAAGGTAATCCCATTAGTTAT
GTTGAACATTAACATAAGATGTATTTAAAT	TATTTAAATGTACCACTAGAATTCACATCCCCTACAT
GTTGAACATTAACATAAGATGTATTTAAAT	CTAGCATTAGAGTTGTTTATTTTTATATCAAATATA
GTTGAACATTAACATAAGATGTATTTAAAT	TCTTATTCTCTAATAAATTAACTTTAGATTCTAT
GTTGAACATTAACATAAGATGTATTTAAAT	GCAGGTAATGTGTGTGGCAGTATATCTCCCTCTGC
GTTGAACATTAACATAAGATGTATTTAAAT	AGCAAAAACATGAGTATAAATAATGTATTTGATAGAA
GTTGAACATTAACATAAGATGTATTTAAAT	TATATTACTAATTCTTCTTCTATAGTAAAGCTATATT
GTTGAACATTAACATAAGATGTATTTAAAT	TATATTTTAAATTCATCACAATTACAGTTATAACATT
GTTGAACATTAACATAAGATGTATTTAAAT	ATATCTTACAGGTCCTAAAACCCTTCCAGTTTTTA
GTTGAACATTAACATAAGATGTATTTAAAT	TTATAACTTCCTTCTGTAACTAATTTATATTTTAAT
GTTGAACATTAACATAAGATGTATTTAAAT	TTTAATGCACCATTGGAACTGTTAACTGCTTTTTTA
GTTGAACATTAACATAAGATGTATTTAAAT	TATATAAAGCCTACCCTTCGTGGTGGGAAAAAAGTT
GTTGAACATTAACATAAGATGTATTTAAAT	TTATATGTTAATTCCATTTATACCTCCTAGAATTT
GTTGAACATTAACATAAGATGTATTTAAAT	AGGGTAATGGCTGGGTAGGTATAGGCTATCATTT
GTTGAACATTAACATAAGATGTATTTAAAT	TCTATTCTGGAAGGTATTTGTTCTCTATCTTCCTT
GTTGAACATTAACATAAGATGTATTTAAAT

>CP029458|3|3|1410643-1413099|CRISPRCasFinder
GTTGAACATTAACATAAGATGTATTTAAAT	CGTTATCACCACTCCTTATATTAGTTTATCCATATAT
GTTGAACATTAACATAAGATGTATTTAAAT	ATATACTATGTGGAATAGAGGAGATGTTGTATTAA
GTTGAACATTAACATAAGATGTATTTAAAT	GAAGCAGCACAATATTTCTATGATGGTTTCTTAGGTT
GTTGAACATTAACATAAGATGTATTTAAAT	TATCTAAAAAATAGATACACTCACTATGCATATCTTT
GTTGAACATTAACATAAGATGTATTTAAAT	CTAGTTTGTATTACTTTAAGTCTGTTTATAGCAC
GTTGAACATTAACATAAGATGTATTTAAAT	AATTTATAATTATCATTTAGAACTGTTGTAATAATA
GTTGAACATTAACATAAGATGTATTTAAAT	GAAGAAATAAGTTTAGATGATAAAAAGCTTTTAGAA
GTTGAACATTAACATAAGATGTATTTAAAT	CTTTTAGTTTCTACATTGTCAATACTACTTTCCCAA
GTTGAACATTAACATAAGATGTATTTAAAT	AGTTTTTTTGCTTTGTTTTCTATAATTTTATCCTG
GTTGAACATTAACATAAGATGTATTTAAAT	TAATAATACTGTGTAATTATATCTACTCCAGATTT
GTTGAACATTAACATAAGATGTATTTAAAT	TTTATTTCATTTGATATACATAAATTATTTATAGC
GTTGAACATTAACATAAGATGTATTTAAAT	ATTTGTAGGTAAAAATAAAAGAACTTCTCTAGTAAC
GTTGAACATTAACATAAGATGTATTTAAAT	AGTGATAATAAATGGCTTATATTTGTAAGCAATAA
GTTGAACATTAACATAAGATGTATTTAAAT	TAACCAGCAACAGTTGGTCTACTCTTATTAAGCAGGT
GTTGAACATTAACATAAGATGTATTTAAAT	TAAAGATACGAGGTTAAGAAAATATAAAGAAGCAT
GTTGAACATTAACATAAGATGTATTTAAAT	TACCAAACTTTATTTTTCTTTTTATCTGCTTTTAA
GTTGAACATTAACATAAGATGTATTTAAAT	ACGTATTGTTTTTGTTGTAAATCTCTCGCATCTGT
GTTGAACATTAACATAAGATGTATTTAAAT	TATTTAACTAACAACCTAACACATAAAAGTTAA
GTTGAACATTAACATAAGATGTATTTAAAT	CGTTTACGGCAAATAGAATCTATATATTCTAAAGAA
GTTGAACATTAACATAAGATGTATTTAAAT	GAAAAATATAGCTAATAGAATAGGTACTGTAAACA
GTTGAACATTAACATAAGATGTATTTAAAT	GTATTTTCTTTTATAGAATTAAGTAAATTACCAGCA
GTTGAACATTAACATAAGATGTATTTAAAT	AAATTTAAAATATAAGAAGGTAATCCCATTAGTTAT
GTTGAACATTAACATAAGATGTATTTAAAT	TATTTAAATGTACCACTAGAATTCACATCCCCTACAT
GTTGAACATTAACATAAGATGTATTTAAAT	CTAGCATTAGAGTTGTTTATTTTTATATCAAATATA
GTTGAACATTAACATAAGATGTATTTAAAT	TCTTATTCTCTAATAAATTAACTTTAGATTCTAT
GTTGAACATTAACATAAGATGTATTTAAAT	GCAGGTAATGTGTGTGGCAGTATATCTCCCTCTGC
GTTGAACATTAACATAAGATGTATTTAAAT	AGCAAAAACATGAGTATAAATAATGTATTTGATAGAA
GTTGAACATTAACATAAGATGTATTTAAAT	TATATTACTAATTCTTCTTCTATAGTAAAGCTATATT
GTTGAACATTAACATAAGATGTATTTAAAT	TATATTTTAAATTCATCACAATTACAGTTATAACATT
GTTGAACATTAACATAAGATGTATTTAAAT	ATATCTTACAGGTCCTAAAACCCTTCCAGTTTTTA
GTTGAACATTAACATAAGATGTATTTAAAT	TTATAACTTCCTTCTGTAACTAATTTATATTTTAAT
GTTGAACATTAACATAAGATGTATTTAAAT	TTTAATGCACCATTGGAACTGTTAACTGCTTTTTTA
GTTGAACATTAACATAAGATGTATTTAAAT	TATATAAAGCCTACCCTTCGTGGTGGGAAAAAAGTT
GTTGAACATTAACATAAGATGTATTTAAAT	TTATATGTTAATTCCATTTATACCTCCTAGAATTT
GTTGAACATTAACATAAGATGTATTTAAAT	AGGGTAATGGCTGGGTAGGTATAGGCTATCATTT
GTTGAACATTAACATAAGATGTATTTAAAT	TCTATTCTGGAAGGTATTTGTTCTCTATCTTCCTT
GTTGAACATTAACATAAGATGTATTTAAAT	TCTTGTTCACACATTATTTTTAGTAACCCTTTATC
GTTGAACATTAACATAAGATGTATCTTAAG

>CP029458|3|2|1410643-1413099|CRT
GTTGAACATTAACATAAGATGTATTTAAAT	CGTTATCACCACTCCTTATATTAGTTTATCCATATAT
GTTGAACATTAACATAAGATGTATTTAAAT	ATATACTATGTGGAATAGAGGAGATGTTGTATTAA
GTTGAACATTAACATAAGATGTATTTAAAT	GAAGCAGCACAATATTTCTATGATGGTTTCTTAGGTT
GTTGAACATTAACATAAGATGTATTTAAAT	TATCTAAAAAATAGATACACTCACTATGCATATCTTT
GTTGAACATTAACATAAGATGTATTTAAAT	CTAGTTTGTATTACTTTAAGTCTGTTTATAGCAC
GTTGAACATTAACATAAGATGTATTTAAAT	AATTTATAATTATCATTTAGAACTGTTGTAATAATA
GTTGAACATTAACATAAGATGTATTTAAAT	GAAGAAATAAGTTTAGATGATAAAAAGCTTTTAGAA
GTTGAACATTAACATAAGATGTATTTAAAT	CTTTTAGTTTCTACATTGTCAATACTACTTTCCCAA
GTTGAACATTAACATAAGATGTATTTAAAT	AGTTTTTTTGCTTTGTTTTCTATAATTTTATCCTG
GTTGAACATTAACATAAGATGTATTTAAAT	TAATAATACTGTGTAATTATATCTACTCCAGATTT
GTTGAACATTAACATAAGATGTATTTAAAT	TTTATTTCATTTGATATACATAAATTATTTATAGC
GTTGAACATTAACATAAGATGTATTTAAAT	ATTTGTAGGTAAAAATAAAAGAACTTCTCTAGTAAC
GTTGAACATTAACATAAGATGTATTTAAAT	AGTGATAATAAATGGCTTATATTTGTAAGCAATAA
GTTGAACATTAACATAAGATGTATTTAAAT	TAACCAGCAACAGTTGGTCTACTCTTATTAAGCAGGT
GTTGAACATTAACATAAGATGTATTTAAAT	TAAAGATACGAGGTTAAGAAAATATAAAGAAGCAT
GTTGAACATTAACATAAGATGTATTTAAAT	TACCAAACTTTATTTTTCTTTTTATCTGCTTTTAA
GTTGAACATTAACATAAGATGTATTTAAAT	ACGTATTGTTTTTGTTGTAAATCTCTCGCATCTGT
GTTGAACATTAACATAAGATGTATTTAAAT	TATTTAACTAACAACCTAACACATAAAAGTTAA
GTTGAACATTAACATAAGATGTATTTAAAT	CGTTTACGGCAAATAGAATCTATATATTCTAAAGAA
GTTGAACATTAACATAAGATGTATTTAAAT	GAAAAATATAGCTAATAGAATAGGTACTGTAAACA
GTTGAACATTAACATAAGATGTATTTAAAT	GTATTTTCTTTTATAGAATTAAGTAAATTACCAGCA
GTTGAACATTAACATAAGATGTATTTAAAT	AAATTTAAAATATAAGAAGGTAATCCCATTAGTTAT
GTTGAACATTAACATAAGATGTATTTAAAT	TATTTAAATGTACCACTAGAATTCACATCCCCTACAT
GTTGAACATTAACATAAGATGTATTTAAAT	CTAGCATTAGAGTTGTTTATTTTTATATCAAATATA
GTTGAACATTAACATAAGATGTATTTAAAT	TCTTATTCTCTAATAAATTAACTTTAGATTCTAT
GTTGAACATTAACATAAGATGTATTTAAAT	GCAGGTAATGTGTGTGGCAGTATATCTCCCTCTGC
GTTGAACATTAACATAAGATGTATTTAAAT	AGCAAAAACATGAGTATAAATAATGTATTTGATAGAA
GTTGAACATTAACATAAGATGTATTTAAAT	TATATTACTAATTCTTCTTCTATAGTAAAGCTATATT
GTTGAACATTAACATAAGATGTATTTAAAT	TATATTTTAAATTCATCACAATTACAGTTATAACATT
GTTGAACATTAACATAAGATGTATTTAAAT	ATATCTTACAGGTCCTAAAACCCTTCCAGTTTTTA
GTTGAACATTAACATAAGATGTATTTAAAT	TTATAACTTCCTTCTGTAACTAATTTATATTTTAAT
GTTGAACATTAACATAAGATGTATTTAAAT	TTTAATGCACCATTGGAACTGTTAACTGCTTTTTTA
GTTGAACATTAACATAAGATGTATTTAAAT	TATATAAAGCCTACCCTTCGTGGTGGGAAAAAAGTT
GTTGAACATTAACATAAGATGTATTTAAAT	TTATATGTTAATTCCATTTATACCTCCTAGAATTT
GTTGAACATTAACATAAGATGTATTTAAAT	AGGGTAATGGCTGGGTAGGTATAGGCTATCATTT
GTTGAACATTAACATAAGATGTATTTAAAT	TCTATTCTGGAAGGTATTTGTTCTCTATCTTCCTT
GTTGAACATTAACATAAGATGTATTTAAAT	TCTTGTTCACACATTATTTTTAGTAACCCTTTATC
GTTGAACATTAACATAAGATGTATCTTAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP029458.1\|AYF54408.1\|1418199_1420137_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|275170
CP029458.1\|AYF54411.1\|1422262_1423288_+\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
CP029458.1\|AYF54401.1\|1409173_1410172_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
CP029458.1\|AYF54409.1\|1420191_1421205_+\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
CP029458.1\|AYF54405.1\|1415451_1416297_+\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180705
CP029458.1\|AYF55226.1\|1401729_1402398_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
CP029458.1\|AYF54410.1\|1421278_1422175_+\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
CP029458.1\|AYF54400.1\|1408667_1409162_+\|Dna2/Cas4-domain-containing-protein	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP029458.1\|AYF54404.1\|1414254_1415409_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341473
CP029458.1\|AYF55227.1\|1402660_1404193_+\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
CP029458.1\|AYF54403.1\|1413166_1413931_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
CP029458.1\|AYF54407.1\|1417388_1418177_+\|5-deoxyglucuronate-isomerase	unknown	unknown	gnl\|CDD\|377429
CP029458.1\|AYF54397.1\|1404195_1405194_+\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP029458.1\|AYF54406.1\|1416319_1417336_+\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|275175
CP029458.1\|AYF54398.1\|1405196_1405958_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
CP029458.1\|AYF54396.1\|1397672_1398365_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP029458.1\|AYF54395.1\|1396005_1397646_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380122
CP029458.1\|AYF54412.1\|1423626_1425225_+\|solute:sodium-symporter-family-transporter	unknown	unknown	gnl\|CDD\|236699
CP029458.1\|AYF54402.1\|1410171_1410459_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP029458.1\|AYF54399.1\|1406025_1408659_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350688

Protein	Function_ID	Function_description	E-value
CP029458.1\|AYF54408.1\|1418199_1420137_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|275170	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase. Members of this protein family, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (iolD), represent one of eight enzymes in a pathway converting myo-inositol to acetyl-CoA. IolD hydrolyzes the cyclic molecule 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione to yield 5-deoxy-D-glucuronic acid. TPP is a cofactor. [Energy metabolism, Sugars].	0
CP029458.1\|AYF54411.1\|1422262_1423288_+\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	5.55033e-127
CP029458.1\|AYF54401.1\|1409173_1410172_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.92127e-148
CP029458.1\|AYF54409.1\|1420191_1421205_+\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	0
CP029458.1\|AYF54405.1\|1415451_1416297_+\|fructose-bisphosphate-aldolase	gnl\|CDD\|180705	PRK06806, PRK06806, class II aldolase.	1.86594e-164
CP029458.1\|AYF55226.1\|1401729_1402398_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	6.24089e-11
CP029458.1\|AYF54410.1\|1421278_1422175_+\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	0
CP029458.1\|AYF54400.1\|1408667_1409162_+\|Dna2/Cas4-domain-containing-protein	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.56421e-51
CP029458.1\|AYF54404.1\|1414254_1415409_+\|alcohol-dehydrogenase	gnl\|CDD\|341473	cd08194, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains iron-containing alcohol dehydrogenase (Fe-ADH) most of which have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. It is distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.	0
CP029458.1\|AYF55227.1\|1402660_1404193_+\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	3.1923e-36
CP029458.1\|AYF54403.1\|1413166_1413931_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.15848e-88
CP029458.1\|AYF54407.1\|1417388_1418177_+\|5-deoxyglucuronate-isomerase	gnl\|CDD\|377429	pfam04962, KduI, KduI/IolB family. This family includes the 5-keto 4-deoxyuronate isomerase enzyme EC:5.3.1.17 that is involved in pectin degradation. This family aldo includes bacterial Myo-inositol catabolism (IolB) proteins. The Bacillus subtilis inositol operon (iolABCDEFGHIJ) is involved in myo-inositol catabolism. Glucose repression of the iol operon induced by inositol is exerted through catabolite repression mediated by CcpA and the iol induction system mediated by IolR. The exact function of IolB is unknown. Members of this family possess a Cupin like structure.	6.56094e-79
CP029458.1\|AYF54397.1\|1404195_1405194_+\|CRISPR-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.44447e-48
CP029458.1\|AYF54406.1\|1416319_1417336_+\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|275175	TIGR04382, myo-inositol_catabolism_protein, 5-dehydro-2-deoxygluconokinase. All members of the seed alignment for this model are translated from the iolC gene of known or putative inositol catabolism operons. Members with characterized function are 5-dehydro-2-deoxygluconokinase, the enzyme catalyzing the fifth step in degradation from myo-inositol or closely related compounds. Note that many members of this family are fusion proteins with an additional C-terminal domain, of unknown function, described by pfam09863. [Energy metabolism, Sugars].	2.7945e-168
CP029458.1\|AYF54398.1\|1405196_1405958_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.36704e-61
CP029458.1\|AYF54396.1\|1397672_1398365_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	0.000615808
CP029458.1\|AYF54395.1\|1396005_1397646_+\|hypothetical-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	3.1195e-10
CP029458.1\|AYF54412.1\|1423626_1425225_+\|solute:sodium-symporter-family-transporter	gnl\|CDD\|236699	PRK10484, PRK10484, putative transporter; Provisional.	0
CP029458.1\|AYF54402.1\|1410171_1410459_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.45191e-25
CP029458.1\|AYF54399.1\|1406025_1408659_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.4196e-26

>CP029458.1|AYF54402.1|1410171_1410459_+|CRISPR-associated-endonuclease-Cas2
MSKKINYNYAFLFYDVKEKRVNKVFKVCKKYLTHYQKSVFRGEITPSNIIKLREDLKKVIDESEDFICIIKLLNNKVFGEEVLGVGIETAEDLIL
>CP029458.1|AYF54401.1|1409173_1410172_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSTKYLMSMGEVSRKDNSLCFRKNSKNQYIPIENVKEIYCLSEISLNTKLLDFISHNNIVMHFFNYYGGYSGTFYPKENLVSGRLLVKQVKAYENKRMDIARAIVLGIGENIHEVMYHYYKHNVNEVKELLDWIKTEFKSKLENVQDIKSLMQVEGEVWQRFYSNFKYILPENFIINKRVKRPPDNPINAMISFGNSMLYSKTVSVIYNTHLDQKISFLHEPSEGRFSLSLDLSEVFKPIITFKTIFELVNRKKIQVSKHFDKNLNYCILNEAGKKIFIEAFEGRLESIFEHPKLKRKISYKTAIKLDCYKLIKNILEEKEFKPFRLKDKI
>CP029458.1|AYF54400.1|1408667_1409162_+|Dna2/Cas4-domain-containing-protein
MRVNGTLVNYYIHCKRQCWLHGNRVNMENNSEDVKIGKAIHKIREEHGKNTEVSIENIKIDKITKEYLVEVKKSDSDIEAVRWQILFYLKILKDKGIDKKGKIEVIEKKKSNNKIIYEELTEEKEERLKEIIFNVEKLIGDENLPMVEFDNKCKKCAYYEYCYV
>CP029458.1|AYF54399.1|1406025_1408659_+|CRISPR-associated-helicase/endonuclease-Cas3
MYFEKTEKFDISKYIKNSEKIYAHINNKTREKETLKEHVERSLKYFYKLVYSKNLENIFLKFEEKLCREFSDEEKNLFREMIINTIYMHDLGKININFQRLKMHNKYWENHKEFEFNNSNHSCLSSLIYMDYYYKKIKSNSNLNSLESKKLLKIFMILNAYVISKHHTGLDKLEDFKVKLTEDDGEGQRLCSSELSLFEDIYNEKIKFTTNENILKNLFKNTEKNLRRYEEEENNISFVFYIYERLMLSILLMCDYYATSEFEHGDEVKGFNEIENIYDFYDEFNNTKINKDTREYEKNEYDTKRDFSNLKDINILRKELFLDAEKELLKNLDKNIFYLEAPTGSGKSNVAFNLTFRLIEKERNLKKLIYVYPFNTLVDQNIKTIEKIFNNKKDVLNNMAVINSITPIKIRKKDLDDNTIDYNTSLLDRQFLNYPMILTTHVSLFNYFFGISKEDIFPLAKLCNSVIVLDEIQSYKNYIWKEIITFLKYYSEFLNIKFIIMSATLPNLDILMDDESNSISLISNRDKYFDNKLFKNRVKIDYSLLDSADIEDSKDAKLEKIFNHVVEQSNNSEKNILIEFISKDTAAKFHEMLIEYKEEYGLGTQDVRDIELITGDDNSIERNKIINKITKEENKNIILVATQVIEAGVDIDMDIGYKDISMLDCDEQFLGRINRSCLKESGIVYFFNLDSASGIYKNDYRKPKQLTLISEKFHTRRWLENKEFYKFYKHVLEVINKNGTDKYKENSISNFVKNSMNKFDFINISERMKLIDDNKMECSVFLNRELELDDERVLKGYEIWDSYKELLQNNEIDYAEKKVKLSKVVSDMNYFIYKVRKGNFNITECIGEIYYIEDGEKYLENGKFIKSKFQGIDSDIC
>CP029458.1|AYF54398.1|1405196_1405958_+|type-I-B-CRISPR-associated-protein-Cas5
MEVLKFNLKGETAFFKRPDVNTYLYFTYGNIHKVALLGILGAIMGYKGYNNQCNKIYKHEKEQCIYPEFYEKLKGLKVGIVPINHHGYNLKKVQTFNNSVGYASKEQGGNLIVKEQWLEKPKWEIYILIENEITRELADRLKNYKFKYIPYLGKNDHIADIGFVEVIKNAEKIHSVDKLDGLFMKKYFTLNLDNEDEEEESIWKYEESLPISLEEVTNKYELETFLMTNAIVNIKDYDKVQIYKCNNKNIYFF
>CP029458.1|AYF54397.1|1404195_1405194_+|CRISPR-associated-protein
MMNKRIYGLLGIASIMANWNADFTGYPKTISTGEIFGSDKAFKYPIKKMWNQQGEKVLYIKSMKLEEDKNGISDLTPRSLKERYEYLFENNKVSDNKEGKTDKKSKKDGKEVLTNLFKAIDVKNFGATFAEEGNNISITGAVQIGQGFNKYEESYAEEQQILSPFRDASQKKKSKKENEEKEDAKASTLGTKIVSNEAHYFYPFAINPTAYDEFVELGVTDGYTEEDYKKFKDASLIAATSFNTNSKVGCENEFALFVETDKELYLPNLSQFVEFEKKDDKGVIKLTCGKLLDGLKDKIKSIEIYYNPYTTILDSDIKDAKKFNIFTKKEEV
>CP029458.1|AYF55227.1|1402660_1404193_+|type-I-B-CRISPR-associated-protein-Cas8b/Csh1
MNKPIDSKKVIHSNNYLSFFVKLDSISGGKLTNEIIHNYYEVLRNPQDKYKKDKNKLAMYEDAEKEFGKVNEERLNKIEEWIINNIYNLVPKDSKEKTYLKIFFKYDLSEYEKESKKYLIPNIYNSTDFNISINDTLYGLPNNNMGLNSKKPYLENKTRKTTVPFLISLKEVLIQKKLFDFLMNMATTGRVNIYLNEKEIIALSNKESLKNNFQGAYIRIKKGKELEILDFDIIENYKVKLKQPMKVKNILQINYEKLSKKLPDYYHEIKLVENLKIFINEILFSKFLDSNYFTEAKDLSINNSNLKMNLLLSRNILFNWFFKGNQQGVWEVLNKTSLSLIKGSINNGYMIRASEQFNLRCALKEYFKGDEKSMADVLKEVKDSLRKKINIKFDEATSSIENDDEYYFAVGQLAGYFISLNKSKNKPHSLANPVINARNDKRIKDELIKLYKKYNYAIPYTKGRFENLMAIVKSYEPKEKVKDDLIIAGYLHSNLIFEKTEDSKNENGGN
>CP029458.1|AYF55226.1|1401729_1402398_+|CRISPR-associated-endoribonuclease-Cas6
MVDVYTMEDIKVNKQSIKISKLIDKTLCMNDKFLKLHKENCFKNYCFNWLYPIETDVYKKGKIYTFIIRTVDKELVEYFKKYLINEYTESLKVLTIKTKLIPQCPIEKIYSITPLIIKAQGYWKNNLTFKQFEERIFSNLIKKYNEYFNIKINENFSLYNNIVISNKKPISMPVKGVRLLGDKVTLYISNNEMSQKLAYFALGVGLGEVNGRSAGFCNYKYL
>CP029458.1|AYF54396.1|1397672_1398365_+|hypothetical-protein
MDFYELRITLNLKKDIHCDYITERLSVLFNKAMIYSEYLKSIHKVNMYKLYTFEGLSPFEKDKVYKRGRYYMTRFRCIDKFVAEEFKKCLKQTKTNEFDILAVDIDIVTPKYIKILFNVTPAIAIINNEPWTDKMNIDLLKKSINENLIKKIKFIQDIDETLELDMIKCIKLKNRMPIGCKYKHIKLLGNKFEIEIKDDDISQFMANIALAVGILEKNSLGYGYCLYKSK
>CP029458.1|AYF54395.1|1396005_1397646_+|hypothetical-protein
MDICDENYYKQIINIIEKHKKDNSAEATIKGFLYQFLVTLDKWIEMYRQKKFFEIYPEDCDDIKIKSENKIQYIQVKAYDSINFTLNHDRFIKSVENFWELYIYNNMKPNIQFIFHTNSKPGNKAYLMKRWIEGNLTNSEKEEIYLNIKEKLNKTIEQKFKEDKYKKTIKENIKNESLRFIDSIKLVFEETTVDNSKERLEHNILNNIKLINGCYKCKNIFYRLLIEVIEKSIKKNCKDKKLDNELLSSILHDSEENIIMKIEEKLDDMKNDINTMSNKHSAEHKEIKEEIKKIANKETHYIEEDTLNVIVSSRHQLGQKAYTLDLTEFFKYGEGYSCYKYIKSYNIWNNELLKKINVFFNNLIKEQNNQKHSILLDGIHYSIAFYIGYKYGKALRNPYLKRENEVYKFKSINTDNNYKIYDNKTLLKDTKDVVVIINTSRDSESIKDEVKDFINKSNINRFSIINLTLGERNDNGSVDKNNFYYIASQMAKLIQKYVNKDQTIHLFSITTVEEIFAIGRLLFDMKNIILYEHVGEEKIYMPTIRL
>CP029458.1|AYF54403.1|1413166_1413931_-|DeoR/GlpR-transcriptional-regulator
MKSHRIKEIENYVLQNEHASLDTLCSLFNVSKNTIRRDITVLVNRGIVKKVYGGITLNNEKNLTVPFEQREVTHKDEKYLIAKYASKLVEDNDIIFIDSGTTTVHMIPFLTDRKNLTIITNNLNILLKALPYSNVDILSTGGTLFRETNSLIGVEASNFLKNYNISKAFMATTGFSIDKGVTNSSNFEYEVKKTVVENSSNVILLADHSKLDTASLKTYCKLEDITCFITDRIPPKEYVKFFEEHNINLITPDN
>CP029458.1|AYF54404.1|1414254_1415409_+|alcohol-dehydrogenase
MAHKVIVPKRIVYGKEALKDAGIYLKEFGKKALIVTDEIMVKIGNVSRLTDILNENNIKYAIYDKVNSEPTDVMVDKGIDIYISEKCDYLIGLGGGSSIDTMKAIGAMITNPGKLSDYMGKIIENCPPPLVAVPTTAGTGSEATQFTIISDTVNNVKMLLKGPNLLPQLAIVDAEMTMTAPKGVTAATGIDALTHAIESYTSRLAQPLSDTFALSAIKRIFNNLRKAYNEGNDFEARNQMSLGSLEAGIAFNNASVTIIHGMSRPIGALFHVPHGVSNAMLFVECLKFAIEGTPERFADIAKVIGSYKEGMTNIEAAKTVVDEIGKLCSDINIPTLKEFGIDKVKFFENIDKMAIDALESGSPSNTIKQPTKEEIIEIYKKLWS
>CP029458.1|AYF54405.1|1415451_1416297_+|fructose-bisphosphate-aldolase
MPLVNMEQILNKADKEGYGVGSFSVANIEMVMGAIKAAEELSSPLILQIAEVRLLHSPLHIIGPAMVAAAKEAKIPVAVHFDHGINIETIHQALEIGFTSVMFDGSDYPIEENIKKTKEVIKLAEKYGASVEAEIGQVGGSEDGSVDIDIRLTSVEDAEKFYDETGVNALAVAIGNAHGVYKEEPKLRMDRLKEIDKSVDVPLVLHGGSGINEYDFKNCVDNGIRKLNVATATFNNVVRRVEMLFNTNKSVDYFTYHDEVIDAAYENVKKHIMIFGSRNRA
>CP029458.1|AYF54406.1|1416319_1417336_+|5-dehydro-2-deoxygluconokinase
MNNIKFDNSRKYDVIPIGRVAIDFNPTDIHKPLEESRNFNKYVGGSPANIAVGLARLGKKVGFIGKVSNDQFGKFVTNYFENEGIDTSHITIAKNGESLGLTFTEILSPTESSILMYRNGIADLMLSPEDIDEDYIKSAKMIVVSGTALAASPSREACFKAIEFAKKHGTKVLFDVDYREYNWKSLDEIAVYYSLAGKISDIVMGSREEFDLMERLMVESSTDRETADRWIGFGNKIVVIKHGKDGSTAYTEDGQSFSIKPFPIKLLKSFGGGDAYGSAFMYGLLEGWEIIDALEFGSASAAMLVSSHSCSEDMPTVEEIKEFIRQKKEEYGEMIARA
>CP029458.1|AYF54407.1|1417388_1418177_+|5-deoxyglucuronate-isomerase
MVEKIASLIKGYNVLTDMNGKHSNMLMDTGIYKMGKDEVEVALDNKKESAFLLLDGKIQIEWQGNKKEMERHSIFDEDPWCLHVPKNVEVKITAITDAEVLVQKTTNNKEFHCKFYAPEDCQSDIFGEGVWNDTARRVVRTVFDYSNAPYSNMVMGEVITFPGKWSSYIPHEHPQPEIYYYRFNKPQGFGCSVIGDEVFKITDNSVAAIPGGLVHPQTSAPGYAMYYCWMIRHLDNNPWTDRINAEEHKWLLEPNVKIWPEK
>CP029458.1|AYF54408.1|1418199_1420137_+|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MKTLRLTVAQALVKFLNQQYIEFDGEQHKFIKGIFTIFGHGNVVGLGQALEQDPGDLEVHQGRNEQGMAHVATAFAKQMHRKQIYACTSSVGPGAANMVTAAATATANNIPVLILPGDTFATRQPDPVLQQVEQTYNLSITTNDAFKAVSKYWDRVVRPEQLMPAMINAMRVLTDEANTGAVTIALPQDVQGEAYDFPEYFFKKRIHRIERRLPTKESIKDAVELIKSKKKPIMVCGGGVRYSEAAEALKKFAETFNIPFGETQAGKSAIEWDYEYNLGGIGTTGNLAANVIAKDADLVIGIGTRFTDFTTASKSLFQNEDVDFLTINVSEFHAYKLDAQARVIADAKVALDAIREELCKANYKSSYTTEIKDAKDAWIKELDRLFNVKYTGEGFVPEIAGELDDVLPEFHKQMGSCLTQTQVLGELNKLIDDDSIVLGAAGSLPGDLQRVWCPKKPNTYHMEYGYSCMGYEVAGALGAKLAAPDKEVYALVGDGSFMMLHSELVTSIQDRKKINIVLLDNAAFGCINNLQMGNGMGSFGTEFRFRNEETGKLDGELVPINFAKVAEGYGVKTYSVKTVEELRNAIEDSKKQTVSTLIDIKVLPKTMTHGYESWWHVGVAEVSNKPSIQKAYKEKEEVLKRARRY
>CP029458.1|AYF54409.1|1420191_1421205_+|inositol-2-dehydrogenase
MLKVGIIGAGRIGKVHTESITKYVPNAEVKAIADPFMNDATAEWAKSMGVKEVYKDYKEILNDPEIEAVLVCSSTNTHSEISIEALRAGKNVFCEKPVDHDLGRIKNVLEEVKKSGKKFQVGFNRRFDHNFKAIKDAVLAGKVGDPHIIRVTSRDPEAPPAEYVKVSGGIFLDMTIHDFDMVRFLSGSEVEEVYANGAVLVDPAIGEAGDIDTAIITLKFANGALGVIDNSRRAAYGYDQRAEVFGSKGAVATANDTLSTAVISTEEGISSEKPLYFFLERYMQSFAEEIRQFINAIVNDTEVPVNANDGLQPVLIGLAAKKSLEEGRPVKLSEFKF
>CP029458.1|AYF54410.1|1421278_1422175_+|myo-inosose-2-dehydratase
MFNKDKVKLGIAPIAWTNDDLPELGKENTFEQCISEMALAGFTGSEVGNKYPRDTKVLKKALELRGMEIASAWFSAFLTTKPLKETVDAFIEHRDFLHDMGAKVVVVAEQGHSIQGMMDKPVYDAKPYFTDEEWTKLAEGLNKLGQLAADKGMKVVYHHHMGTGVQTTSEIDKLMEMTDPNLVYLLFDTGHLVFSGEDAMAVLKKYVNRIKHVHLKDVRPEVVEKVKSEKLSFLQAVNAGAFTVPGDGCIDFEPLFKVLAENNYEGYLLVEAEQDPAKANPLEYAIKARKYIKEKAGL
>CP029458.1|AYF54411.1|1422262_1423288_+|inositol-2-dehydrogenase
MKKVKFGIVGLGRLGRKHAENLAFRIPNAELLAVCSVVEEEVEEVKDTWGIKYGYTNFDEMLKNKELDAIFISSPSGFHCEQIEKALDAGFHVFSEKPLGLYLEEAKRVAKAVNEHKNQVFMVGFMRRYDDSYAYAKKKIEEGAIGKPVLIRCYGLDPAGSMEGFLKFAKSNYSGGLFLDMAVHDLDLARWYLESEADMVWAIGGAYEYPEFDEISDAETGAALVKFKNGTMGVFVAGRNCAHGYHIETEIIGTKGTLRVGTVPQKNLVTVFDETGARQECVQGFPERFDQAYLSETEEFVKCVLENRKPGVVVEDGVKSTALAYACKESFETGNLIKVED
>CP029458.1|AYF54412.1|1423626_1425225_+|solute:sodium-symporter-family-transporter
MSIWTVASFIGFTVLVAVISWYKTKDDNLDTQDGYFLGGRSLTGIVIGGSLMLTNLSTEQMVGLNGNSYLTNMGPMAWEATSTVALVILALVFLPKYLKSGITTIPDFLEERYDKKTKQIISVLFLIGYVVTYLPTVLYSGAIVLNEIFGIQRLLAVSQFKAVAITATAIGIIGAIYAIFGGLKAVAVSDTVNGVGLLIGGLSIPVFALIVLGHGSFSAGIHTLVTVHPEKLNAINPANSQKPLVPWPVLFTGLLFNNLFYWCTNQSIVQRCFGGKNLKEAQKGALFAGFLKLLGPFFLVLPGIIAFHLYGNTLEKGDLAYPKLVLDVLPTPLLGFFAAVLFGAILSSFNSALNSAVTLYTLDIHRPVFNPKATDAELVQIGKKFGTVLAVLSISIAPFIIYAPSGLYGYLQECFGFYNVPILAAVIVGFFSKKVPAIAPKIALISHVVLYTISKFVASDIHFLYVLGVLFPVNVMIMLVVGKMQPRKTDYVQKYTKQVDITPWKYAKTVSFVSICIMLLVYALFSKIGIGA

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Crispr_ID: CP029458_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029458_4

1563634-1564464

TypeV-U3

Consensus_repeat	Method
GTTTTAGTTTAACTATGTGAAATGTAAAT	PILER-CR
GTTTTAGTTTAACTATGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTTAACTATGTGAAATGTAAAT	CRT

12 spacers

c2c10_CAS-V-U3

The CRISPR arrays of CP029458_4

>merge|CP029458|4|1563634-1564464|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTTAACTATGTGAAATGTAAATATGTAATAAATATAAATAATAAATATAAATAACTATGTTTTAGTTTAACTATGTGAAATGTAAATAATTAGATGGTGTTTTAATCTCCATTTATTCGGTTCTGTTTTAGTTTAACTATGTGAAATGTAAATGAATGAAATATATAATAAAATAGTAAAATAAAATATAAGTTTTAGTTTAACTATGTGAAATGTAAATATGTCCATTACTTCTATAACTGTTGAGGTTGGCTATCTGTTTTAGTTTAACTATGTGAAATGTAAATTTTAGTACTTGCTGTCCAGCTACAAATCCAGTAGCATGTTTTAGTTTAACTATGTGAAATGTAAATAATGTTTCAGCTTGTACTTTTTTAGCGTTTAAAATTAAGTTTTAGTTTAACTATGTGAAATGTAAATATCCCAATCTAATTTAGAATCTTGGGACTGGTCTACGTGTTTTAGTTTAACTATGTGAAATGTAAATTGGGAACACGTTTCATTTACATTTAGTATAGAAGGAGGTTTTAGTTTAACTATGTGAAATGTAAATTAGTTAGCCCATTCACCTCTTGCTTTCTTTGCAGCAATACCGTTTTAGTTTAACTATGTGAAATGTAAATCTTTCGGTTCTTGTATTTTAATTATGTTATCTTTTTTCTGTTTTAGTTTAACTATGTGAAATGTAAATCAGATACAGACTTAGAAAAAGCTCCAACAGAAGAAGGTTTTAGTTTAACTATGTGAAATGTGAATGAGCATAGCAATAAATTTCGTTTCATTTTGTTTGAGTAAGTTTTAGTAAAATACTATGAAGTGAAGGG

>CP029458|4|4|1563634-1564331|PILER-CR
GTTTTAGTTTAACTATGTGAAATGTAAAT	ATGTAATAAATATAAATAATAAATATAAATAACTAT
GTTTTAGTTTAACTATGTGAAATGTAAAT	AATTAGATGGTGTTTTAATCTCCATTTATTCGGTTCT
GTTTTAGTTTAACTATGTGAAATGTAAAT	GAATGAAATATATAATAAAATAGTAAAATAAAATATAA
GTTTTAGTTTAACTATGTGAAATGTAAAT	ATGTCCATTACTTCTATAACTGTTGAGGTTGGCTATCT
GTTTTAGTTTAACTATGTGAAATGTAAAT	TTTAGTACTTGCTGTCCAGCTACAAATCCAGTAGCAT
GTTTTAGTTTAACTATGTGAAATGTAAAT	AATGTTTCAGCTTGTACTTTTTTAGCGTTTAAAATTAA
GTTTTAGTTTAACTATGTGAAATGTAAAT	ATCCCAATCTAATTTAGAATCTTGGGACTGGTCTACGT
GTTTTAGTTTAACTATGTGAAATGTAAAT	TGGGAACACGTTTCATTTACATTTAGTATAGAAGGAG
GTTTTAGTTTAACTATGTGAAATGTAAAT	TAGTTAGCCCATTCACCTCTTGCTTTCTTTGCAGCAATACC
GTTTTAGTTTAACTATGTGAAATGTAAAT	CTTTCGGTTCTTGTATTTTAATTATGTTATCTTTTTTCT
GTTTTAGTTTAACTATGTGAAATGTAAAT

>CP029458|4|4|1563634-1564396|CRISPRCasFinder
GTTTTAGTTTAACTATGTGAAATGTAAAT	ATGTAATAAATATAAATAATAAATATAAATAACTAT
GTTTTAGTTTAACTATGTGAAATGTAAAT	AATTAGATGGTGTTTTAATCTCCATTTATTCGGTTCT
GTTTTAGTTTAACTATGTGAAATGTAAAT	GAATGAAATATATAATAAAATAGTAAAATAAAATATAA
GTTTTAGTTTAACTATGTGAAATGTAAAT	ATGTCCATTACTTCTATAACTGTTGAGGTTGGCTATCT
GTTTTAGTTTAACTATGTGAAATGTAAAT	TTTAGTACTTGCTGTCCAGCTACAAATCCAGTAGCAT
GTTTTAGTTTAACTATGTGAAATGTAAAT	AATGTTTCAGCTTGTACTTTTTTAGCGTTTAAAATTAA
GTTTTAGTTTAACTATGTGAAATGTAAAT	ATCCCAATCTAATTTAGAATCTTGGGACTGGTCTACGT
GTTTTAGTTTAACTATGTGAAATGTAAAT	TGGGAACACGTTTCATTTACATTTAGTATAGAAGGAG
GTTTTAGTTTAACTATGTGAAATGTAAAT	TAGTTAGCCCATTCACCTCTTGCTTTCTTTGCAGCAATACC
GTTTTAGTTTAACTATGTGAAATGTAAAT	CTTTCGGTTCTTGTATTTTAATTATGTTATCTTTTTTCT
GTTTTAGTTTAACTATGTGAAATGTAAAT	CAGATACAGACTTAGAAAAAGCTCCAACAGAAGAAG
GTTTTAGTTTAACTATGTGAAATGTGAAT

>CP029458|4|3|1563634-1564464|CRT
GTTTTAGTTTAACTATGTGAAATGTAAAT	ATGTAATAAATATAAATAATAAATATAAATAACTAT
GTTTTAGTTTAACTATGTGAAATGTAAAT	AATTAGATGGTGTTTTAATCTCCATTTATTCGGTTCT
GTTTTAGTTTAACTATGTGAAATGTAAAT	GAATGAAATATATAATAAAATAGTAAAATAAAATATAA
GTTTTAGTTTAACTATGTGAAATGTAAAT	ATGTCCATTACTTCTATAACTGTTGAGGTTGGCTATCT
GTTTTAGTTTAACTATGTGAAATGTAAAT	TTTAGTACTTGCTGTCCAGCTACAAATCCAGTAGCAT
GTTTTAGTTTAACTATGTGAAATGTAAAT	AATGTTTCAGCTTGTACTTTTTTAGCGTTTAAAATTAA
GTTTTAGTTTAACTATGTGAAATGTAAAT	ATCCCAATCTAATTTAGAATCTTGGGACTGGTCTACGT
GTTTTAGTTTAACTATGTGAAATGTAAAT	TGGGAACACGTTTCATTTACATTTAGTATAGAAGGAG
GTTTTAGTTTAACTATGTGAAATGTAAAT	TAGTTAGCCCATTCACCTCTTGCTTTCTTTGCAGCAATACC
GTTTTAGTTTAACTATGTGAAATGTAAAT	CTTTCGGTTCTTGTATTTTAATTATGTTATCTTTTTTCT
GTTTTAGTTTAACTATGTGAAATGTAAAT	CAGATACAGACTTAGAAAAAGCTCCAACAGAAGAAG
GTTTTAGTTTAACTATGTGAAATGTGAAT	GAGCATAGCAATAAATTTCGTTTCATTTTGTTTGAGTAA
GTTTTAGTAAAATACTATGAAGTGAAGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029458.1\|AYF54546.1\|1570156_1571689_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350092
CP029458.1\|AYF54536.1\|1556292_1556832_+\|RNA-polymerase-subunit-sigma	unknown	unknown	gnl\|CDD\|181361
CP029458.1\|AYF54550.1\|1577746_1578727_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379142
CP029458.1\|AYF54548.1\|1575589_1576816_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
CP029458.1\|AYF54533.1\|1554918_1555137_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
CP029458.1\|AYF54537.1\|1557152_1557347_+\|hypothetical-protein	unknown	unknown	unknown
CP029458.1\|AYF54539.1\|1558616_1559603_+\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|365904
CP029458.1\|AYF54541.1\|1560433_1561177_-\|hypothetical-protein	unknown	unknown	unknown
CP029458.1\|AYF54551.1\|1578851_1579796_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|365866
CP029458.1\|AYF54540.1\|1559615_1560425_-\|hypothetical-protein	unknown	unknown	unknown
CP029458.1\|AYF54552.1\|1579941_1580859_-\|hypothetical-protein	unknown	unknown	unknown
CP029458.1\|AYF54544.1\|1565702_1565924_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226852
CP029458.1\|AYF54543.1\|1564473_1564740_+\|hypothetical-protein	unknown	unknown	unknown
CP029458.1\|AYF54542.1\|1561808_1563302_+\|transposase	c2c10_CAS-V-U3	-	gnl\|CDD\|284650
CP029458.1\|AYF54549.1\|1577079_1577679_+\|hypothetical-protein	unknown	unknown	unknown
CP029458.1\|AYF54534.1\|1555150_1555366_-\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933
CP029458.1\|AYF54547.1\|1571810_1575362_-\|serine-protease	unknown	unknown	gnl\|CDD\|173801
CP029458.1\|AYF54545.1\|1567721_1569716_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
CP029458.1\|AYF54538.1\|1557432_1558605_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223348
CP029458.1\|AYF54535.1\|1555438_1555666_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378518

Protein	Function_ID	Function_description	E-value
CP029458.1\|AYF54546.1\|1570156_1571689_+\|hypothetical-protein	gnl\|CDD\|350092	cd08978, GH_F, Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. GH62 are also predicted to be inverting enzymes. A common structural feature of both, GH43 and GH62 enzymes, is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	0.000332206
CP029458.1\|AYF54536.1\|1556292_1556832_+\|RNA-polymerase-subunit-sigma	gnl\|CDD\|181361	PRK08295, PRK08295, RNA polymerase sporulation sigma factor SigH.	6.48976e-16
CP029458.1\|AYF54550.1\|1577746_1578727_-\|hypothetical-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.9551e-05
CP029458.1\|AYF54548.1\|1575589_1576816_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	3.90629e-57
CP029458.1\|AYF54533.1\|1554918_1555137_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	6.8648e-12
CP029458.1\|AYF54539.1\|1558616_1559603_+\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	1.52381e-103
CP029458.1\|AYF54538.1\|1557432_1558605_+\|hypothetical-protein	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	7.71375e-80
CP029458.1\|AYF54544.1\|1565702_1565924_+\|hypothetical-protein	gnl\|CDD\|226852	COG4443, COG4443, Uncharacterized protein conserved in bacteria [Function unknown].	1.73374e-29
CP029458.1\|AYF54542.1\|1561808_1563302_+\|transposase	gnl\|CDD\|284650	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain. This putative domain is found at the C-terminus of a large number of transposase proteins. This domain contains four conserved cysteines suggestive of a zinc binding domain. Given the need for transposases to bind DNA as well as the large number of DNA-binding zinc fingers we hypothesize this domain is DNA-binding.	8.28727e-24
CP029458.1\|AYF54534.1\|1555150_1555366_-\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	9.91859e-06
CP029458.1\|AYF54547.1\|1571810_1575362_-\|serine-protease	gnl\|CDD\|173801	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.20932e-88
CP029458.1\|AYF54551.1\|1578851_1579796_-\|hypothetical-protein	gnl\|CDD\|365866	pfam00089, Trypsin, Trypsin.	0.00151662
CP029458.1\|AYF54545.1\|1567721_1569716_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.00665e-52
CP029458.1\|AYF54535.1\|1555438_1555666_-\|hypothetical-protein	gnl\|CDD\|378518	pfam10960, Holin_BhlA, BhlA holin family. The Phage_holin_BhlA family is a family of holin-like proteins from both bacteriophages and bacterial chromosomes. In bacteriophage, holins are small membrane proteins that accumulate and oligomerize to form non-specific lesions in the cytoplasmic membrane allowing the release of the second protein, endolysins, to access the peptidoglycan. Most holins share common structural features: two or three transmembrane domains separated by a beta-turn, a short hydrophilic N-terminus, a highly charged C-terminus and a dual translational start motif. The BhlA holin of Bacillus is found to be toxic to the host cell where the site of action of is on the cell membrane and causes bacterial death by cell membrane disruption.	6.6221e-26

>CP029458.1|AYF54542.1|1561808_1563302_+|transposase
MITVRKIKLTIMGDKDTRNSQYKWIRDEQYNQYRALNMGMTYLAVNDILYMNESGLEIRTIKDLKDCEKDIDKNKKEIEKLTARLEKEQNKKNSSSEKLDEIKYKISLVENKIEDYKLKIVELNKILEETQKERMDIQKEFKEKYVDDLYQVLDKIPFKHLDNKSLVTQRIKADIKSDKSNGLLKGERSIRNYKRNFPLMTRGRDLKFKYDDNDDIEIKWMEGIKFKVILGNRIKNSLELRHTLHKVIEGKYKICDSSLQFDKNNNLILNLTLDIPIDIVNKKVSGRVVGVDLGLKIPAYCALNDVEYIKKSIGRIDDFLKVRTQMQSRRRRLQIAIQSAKGGKGRVNKLQALERFAEKEKNFAKTYNHFLSSNIVKFAVSNQAEQINMELLSLKETQNKSILRNWSYYQLQTMIEYKAQREGIKVKYIDPYHTSQTCSKCGNYEEGQRESQADFICKKCGYKVNADYNAARNIAMSNKYITKKEESKYYKIKESMV
>CP029458.1|AYF54541.1|1560433_1561177_-|hypothetical-protein
MGSNRSGFQNEDDLMYAINNKSFCELNLNLQSFIYNIYPCVKDSDIITCKKIAGQNKCDLQIKINGQGYRISVKKGSGNSVHQEPVESFIYYLKCEFNLSDSLANDIRFFIWGDGTLNGTGTKKNRLNVDQLKKQYPKMIQQIRNFFELNKEPLIKRFLLTGACGDAIDFIYYGNENNGLWASRDEFIKVVLDNPPNNRTAIPVGRLSFQAWNRAINGTKSENKRGVIQLKWASLQKDLQYITSNRK
>CP029458.1|AYF54540.1|1559615_1560425_-|hypothetical-protein
MSNKGTLEGTAAEIDFVIQSNKDKTLNNPTWTLLSNKLNLDSNLTNYHVIRVTSKVFSRLNNKKVLPKADAYLVEGVVPNDYLIESNYFLNESDVSKFNLKQISYSGISIKRPDSKKFQILKITPDSFKELIGNYVLGAGASIYCKKAEELIKNDFVLKGWHTTWKELTDYFSFIENVHLVNTNKLSNIEMLSIFKEIKNISNERIKKILLNDTTKLDIAFKGTGIFDEPYPAYFLFKDNMFTLNKPFDFKVTTGSGRSKGDFTIVLKP
>CP029458.1|AYF54539.1|1558616_1559603_+|DNA-(cytosine-5-)-methyltransferase
MKYKIIDLFAGLGGFRLAFEKQECECVFSSEIDKSACETYKENFGEYPSGDITQISTYDIPNFDILCAGFPCQPFSIGGRRLGFEDSRGTLFFEVARILKYKKPKAFILENVKGLVNHEGGNTLKTIENILDELGYDFSYKVMNALDYGVPQNRERWYCIGFKKELKVSFENKQVSTQNVFKFPKKKELNFFIEDVIKEKEIKGYKSTDRAIQNINTHLPKFIEKNGRNEDRFIIANEIRPSRCSFRNNGTVPCFTAKMGTGGNNVPVIVDYYRKLTEKECLRLMGFPLNYKIKLNCHQSYKQIGNSVVVTIIEELAKNIVEMLKKVE
>CP029458.1|AYF54538.1|1557432_1558605_+|hypothetical-protein
MKYSVLDLFAGCGGLGHGFKCNNNFEINLANDKWEPARDTYVFNNPEVPFVLDDIKNLSEDIFKKYFPNGVSVIIGGPPCQGFSMCGARDINDERNDLFYEYARIVSYTKPYIFIMENVKGLLSMKNKKGNLIINAIYEEFEKIGYKIQHTVINSKYYRVPQSRERVIIVGTREDLPDNYVYPQPQLTEREVYTVKDALYGLTNENSLNGEISIMNKENNEYYDSIKFDGKIYNHQIPSHKKEVKHRMAFVPQGGNWQDIPEEFRAGGIHSNAYRRLDLTKPSVTIKHAYKSMIIHPIYNRCLSIREVSRLQSFPDNYIFKNTKTSQYQQLANAVPPNLSKALAESVLNYLTKNNLTNDNKQVQLNRLKDKDCNKIRRLNIFNFAEEDIV
>CP029458.1|AYF54537.1|1557152_1557347_+|hypothetical-protein
MSNNNWGGIRKGAGRIPLKFNEKKKGVKIYITDKLKLDILEYGNGKSLSEKAVELIEKELEKRK
>CP029458.1|AYF54536.1|1556292_1556832_+|RNA-polymerase-subunit-sigma
MEQLITKAKSGDVESINFIINKYKNFVFKKASGYHIPGYDFEDLVQHGYLSIIKAIRMYKLGSNSYNGYFINAISTNFAALLKGEIKHFREVPDYNILNKDKEYEFTVEDEVIAYDQIKKLYEAMDKLEPLEREIISRYYINNEKFKDISEDKKLLYDRTIYLRRRAVRKLRNIISNIY
>CP029458.1|AYF54535.1|1555438_1555666_-|hypothetical-protein
MENEILKLASSQGIWAALSVVLIFYILKAQEKRDLKQEQREENYQRIIKNLTDKLHLIEDVKKDLKEVKEVILRT
>CP029458.1|AYF54534.1|1555150_1555366_-|DUF1659-domain-containing-protein
MAQSKVYKSTLALNVLVGTDDKGKDVFKKQGFAKIRTNADINKVAEVGLNAAKLFESAKVLKIDQSIITEE
>CP029458.1|AYF54533.1|1554918_1555137_-|DUF2922-domain-containing-protein
MAKTLLMKFKTDRDKSFSLRVNKVKNDVNEEDVKTLMDSLIKNDVVLASSGTLKVKESAELITTSSEPIDVE
>CP029458.1|AYF54543.1|1564473_1564740_+|hypothetical-protein
MKFIESIDPFLMQLVIVPLIVIGLGVLVAYNIKNILIGPLITLFLNSLYEIWYIKHYCPGSEISLSSWNIILPMISFTISLIVVLIRE
>CP029458.1|AYF54544.1|1565702_1565924_+|hypothetical-protein
MANIKYEIKENIGVVSESAKGWTKELNLISWNDKEPKYDLRDWSPEHEKMGKGITLTLDELKELKEILNNMEL
>CP029458.1|AYF54545.1|1567721_1569716_+|methyl-accepting-chemotaxis-protein
MKHKMKSLYKELIFIIVISMLIPLVLVTITSYYAIVKEKKESFEQISENNIKTVADVIKYINDDSIESMNKLVKDNNAKKILENPNNEVLIRNYLKAFLNSNNGIDSVYLGLKTGKLIVEPDQKIDENYNLFKTDWYNKAINSPNNVILTDPYVANDKDKQYKVTYAKTLNDDSGNTIGVIGLDIKLESINENIKDIKLGKNGYNMVLDKNGTIMADKVKERIGQNDKEILRILNSKGNIFEQNIMGEKWIVFKKIEESTGYIIAGLVPKKELTETILSTSITNILIAIITLFIAILITCKFIKRKLISPIKYIVNILNEFSNGNFSIGIEKSPGLTREIEYIMDAIDLTRNSVVNIIEYIKDASTQLKDSSNSLLSITEQSSSVGDEVAKAIQQIANGAVHQSEKLNESVQLIEELGNIVEISLENSHEMMKSSDEVKNASNKGDSFIKDLREVYNESKSANLEVVKKVKILGEKSKEIENITESIKSITEQTNLLALNASIEAARAGDAGKGFAVVAEEVRKLAEESSNSAIKIKDVIDEIKTSINEVFDTLDKAMQLSDKTGDNVNVTKENFDKIKESIQTLQNNIKNVSIALNNIKEHKDNVEFNISDISAVAQESAATSEEVSASSEEQAAGLQEIVLSSEGLNGLSEKLQEIVSKFQI
>CP029458.1|AYF54546.1|1570156_1571689_+|hypothetical-protein
MKRIIKTLSFSAIIFSAGFVFTNNMIGKVDNESLVKKYAINEKRKIASIAYAESRDDTYGLKVQNAIRPLKTPTYDGSNQAVHPKVLYFKNGWNGYKYWMGITPYPYGNDDYENPQILVSNDGINFKSPKGPNKPLFVPSDVKRGGHYSDIHLCAVNDTLEVYFRYNPAKTEKNEVDNYKNYIYVTKSKDGIHWTDKQLVLDYKTFKIPCAYLSPIINFDKGKYTIWFTNYDGNLYYTETYNWSSFKDLKKCNFPGVPQKLKIWHQDLIKTDLGYEFVCCAYGEIFLNQNIYYSLSKDGINFKPFKKLMEPTHKIGTFDEKTLYRPSLVKRDGQYLLYYSAMDSKLKWHIGMSKDSKGIKIKDLEYEKYINPQIKIENNIEKNKNHIKNNKNDIKDINNKGIKHNRDIKKNNNINNNINKNINNNINNNSQEQINNKNIKQVPKKNNNINNNKTNKPLDNKNINNNVINNNPNKNNNDNKNEGNKDNINKESNNKGNGPNNVDENVVCDK
>CP029458.1|AYF54547.1|1571810_1575362_-|serine-protease
MKRKKILSLILTASILSSTLFTLGASAIELPIVEKVNANMSSAKDITNVLKEWKTFNYKGEGMVISIIDSGIDYRHKDMKLTDPSKAKIKNKNPKGNGKYYTDKIPYGYNYADKNDNIIDTGSMHGMHVAGIVAANGKTDEVCKFEAIQGIAPEAQLLAMKVFSNDPDYPSCNDEDVVNAINDSVRLGADVINMSLGSDAGFVKITEPIQNAVKQAELKGVVVVISAGNSSYSTSPKKVPGIVDTAIIGSPSTAKEALSVASFENTKLNQKALTYTSNNKSKDIAYLTSEIDPINKLKSDYDIVDCGLGTKKDFENIKVKGKIALVQRGKNTFIEKKLNAQNAGAVGVIVFNKDNEKGYITMATDPNITIPAIFISNENGKELKNTISKGVKIKFNTKKIRIDNPKKNTMSDFSSWGPAPSLDFKPQITAPGGNILSTANDDKYKYMSGTSMAAPHTSGIMALVLQHLKTLQLNNLTPMQKVELAKNLVINTSVPQIDKDSKNSSLPYSPRKQGSGLIDALNSIKNNIVILNEDNQPTVALKQINTNTKKFTLTFKNYGNKEKVYFPKDMYGVLTEEKNKIHETTLNGATISFDKNKLIIPGNGETKLEVTLNIPNSCPKGIFVEGFLNFIPKSKDDVTLGIPYMGFYGDWDESPIVDKPIWEKGSYLKTTGIYKISKKNKEILLGMIGKDEKTSTPIVNKDLIAVSPNEDDIISITPKVALLRNAKVLIVNVLDNKGNLVRTLSINKNLSKNKWIQYPEDPLQDDNFKEMSPFKWDLNYYNSSKGIYETVPDGQYYFEIKSKVDFKDSKFQNIKLPIKVDSTAPELIYTSDINSKTRNYTLKFKAKESLSGIKDFKIMVNGQYIKDKSDNYNLTLKPNAQGEYNIDLNLLEGSNKILISSRDNAENISNLSMDVHVNSLTITSPTFNNSLPSGNFTLNYKGDEKLNKETSYYNILVDGNIVAKNHKGLSYKFNNLTSWKHLITVEAYDNKNNKLASNSVDVVVENKNLYINFTGLKREGSYYKYPAIIIKGDLSTKVKSFKIQGEEVKINSNLSFNKLINLKNGQNKVQVLAIDNNNKEHKYALNLYCDLLSPDLILKENINDIIVVDNSTKSYKIKCKIKDNNHGFKLFVNGNEINSNNDMYNKSAEYETDVNLNKGINHIEIKAVDIAGNSTIKHLKIKR
>CP029458.1|AYF54548.1|1575589_1576816_-|sodium:proton-antiporter
MESTTVILTEKLLKLLILVILSGIISAKVSQKIKLPDVVLFILSGVILGPHVLNLINIDKYPLGNQLILTIGAAYILYDGGREIELKVFNKVKVSVLILATLGVVISTTITGFFASKIFHLNIMYALLVGAVIASTDPSVLVPLFKNMNISSKLKQTIISESAFNDAAGAIITFSLIGALSGQAVSVSASLLQLLKSAGGGILVGAIIGYICTKLISEGRWGYLQEFSSESSLVAVLSSYIISEHFGFSGFMSVFILGMICGNKKMLNCTVPEQYYITNSRFKEVLTIILRMMIFVLLGTHIQFTVLGQYWKGSLLVVLILIFVSRPISVILSVIFDRKAKWTFREILYLMWIRETGVIPAALAGMLVSIKFPHSDIISSVTFSTIIITLTLQASTSKLLARALKLEK
>CP029458.1|AYF54549.1|1577079_1577679_+|hypothetical-protein
MKKLIGIIIILLLIMAGCSSSDRESVKITPSNLIEDNLEKLKPHLSDMITGCVKVDYSGKKKEIGCKYEVWENGKLNKSENIIYSSINDKFNGEISVSLRDILNDNMQKSKNMIMTVAVTNGKTVASGMKNIETFDREHSYIINNIKNEIKIKDDKEIAILGITSNGPGKIESSDDIEENAKKVKWGLVVKIYFQNELK
>CP029458.1|AYF54550.1|1577746_1578727_-|hypothetical-protein
MNRNCCNKYNYVCNCNLSYSIEEQIRYICENEYDFFLNKPNVQAVGLGFNVINGICTHEKCIKVFLSKKLSKNSLPPSALIPPIYKGITTDTIESGIFSISQLTSRIRPVLEGYSIGPAAQNTAGTFGCLVKDLKDNSINILSCNHVLARLGAVPICAPILQPGLLDGGNIHTDVIATLSKYIPIKYKGLVSSPTNLVDAAIAKVSDPSLVSNKLAILNTPLRGVSEPNVGEHVFKIGRTTGSTEGYIVATDVSQLETYPTGKALFKHQIITTNPSDPGDSGSILFNGHFNALGLLFMTTNKKNFTSFNLISDVLKLLNISLITSN
>CP029458.1|AYF54551.1|1578851_1579796_-|hypothetical-protein
MYCKSYNFNINTSIDSKISYICLNEYNYFLNKPNVTGIGLGYKIINGFSTFEKCIGVFVTKKIAENNLDMKNRIPKTYKGIKTDVIQSNKVKVSSLTNKVRPTFGGYNIGSSINYKTGTLGCLVTDEEFNYILTNYHVITNEGNPPIGTPILQPGISYSGKIPKDIIATLAKYIPIKFATSPQYRPSNLVDCAIGKLSNPFLASPQVALLGLPKGIASPTLGQNVQKTGCESEKTTGKITHISASVLADVSGKQALFRNQIVTTLMSQAGDSGAVLFDESMNALGLLIGATDCYTVYNSIKDVLNNLNVRLITN
>CP029458.1|AYF54552.1|1579941_1580859_-|hypothetical-protein
MYYYDNLEKRILYIAKCKYDYFFKKANVTGIGLGYKVKNGFYTHKKCIKIFVDVKVSENNIPLHDLIPSYYDGIETDVEQIGISTMCSLKDKVRPVDGGYNISPLIGSPSGTFGCLVTDGRFMYLLSNCHVLATNGATPLDCPILQPGRKYGGKDPEDKIAILSKYIEPKYITPTSSPENFVDCAIAKVTDLSKVSNKIKFLGNIKGTAPAILGESVQKVGCTTELTKGKIIALGVTITIQRPKGNCIFKNQILTNKMGEKGDSGSILLDNHLNALGLLMSASLSSTGFNPITSVLDSLKVQIVH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029458_2	2.2\|1398643\|36\|CP029458\|PILER-CR	1398643-1398678	36	CP029458.1	1237963-1237998	0	1.0

1. spacer 2.2|1398643|36|CP029458|PILER-CR matches to position: 1237963-1237998, mismatch: 0, identity: 1.0

gaagatgaatttatagtttacaggtatgatagaaaa	CRISPR spacer
gaagatgaatttatagtttacaggtatgatagaaaa	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029458_2	2.24\|1399828\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399828-1399863	36	NC_015427	Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence	39126-39161	0	1.0
CP029458_2	2.26\|1399962\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1399962-1399995	34	NC_007581	Clostridium phage c-st, complete genome	182810-182843	0	1.0
CP029458_2	2.26\|1399962\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1399962-1399995	34	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	53411-53444	0	1.0
CP029458_2	2.26\|1399962\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1399962-1399995	34	AP008983	Clostridium phage c-st genomic DNA, complete genome	182810-182843	0	1.0
CP029458_2	2.28\|1400090\|35\|CP029458\|CRISPRCasFinder,PILER-CR	1400090-1400124	35	NC_007581	Clostridium phage c-st, complete genome	927-961	0	1.0
CP029458_2	2.28\|1400090\|35\|CP029458\|CRISPRCasFinder,PILER-CR	1400090-1400124	35	AP008983	Clostridium phage c-st genomic DNA, complete genome	927-961	0	1.0
CP029458_3	3.32\|1412709\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1412709-1412744	36	ACSJ01000019	Clostridium phage D-1873 CLG.Contig160, whole genome shotgun sequence	2679-2714	0	1.0
CP029458_4	4.10\|1564264\|39\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1564264-1564302	39	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	9044-9082	0	1.0
CP029458_2	2.25\|1399894\|38\|CP029458\|CRISPRCasFinder,PILER-CR	1399894-1399931	38	NC_007581	Clostridium phage c-st, complete genome	184294-184331	1	0.974
CP029458_2	2.25\|1399894\|38\|CP029458\|CRISPRCasFinder,PILER-CR	1399894-1399931	38	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	54895-54932	1	0.974
CP029458_2	2.25\|1399894\|38\|CP029458\|CRISPRCasFinder,PILER-CR	1399894-1399931	38	AP008983	Clostridium phage c-st genomic DNA, complete genome	184294-184331	1	0.974
CP029458_2	2.28\|1400090\|35\|CP029458\|CRISPRCasFinder,PILER-CR	1400090-1400124	35	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	59005-59039	1	0.971
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	X59040	Clostridium botulinum D phage gene for exoenzyme C3	279-314	1	0.972
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	X59039	Clostridium botulinum C phage gene for exoenzyme C3	279-314	1	0.972
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NC_007581	Clostridium phage c-st, complete genome	139589-139624	1	0.972
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	6064-6099	1	0.972
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	AP008983	Clostridium phage c-st genomic DNA, complete genome	139589-139624	1	0.972
CP029458_3	3.18\|1411789\|33\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1411789-1411821	33	NC_007581	Clostridium phage c-st, complete genome	182392-182424	2	0.939
CP029458_3	3.18\|1411789\|33\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1411789-1411821	33	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	52993-53025	2	0.939
CP029458_3	3.18\|1411789\|33\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1411789-1411821	33	AP008983	Clostridium phage c-st genomic DNA, complete genome	182392-182424	2	0.939
CP029458_3	3.37\|1413035\|35\|CP029458\|CRISPRCasFinder,CRT	1413035-1413069	35	NC_015417	Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence	166628-166662	2	0.943
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NC_004746	Lactococcus phage 4268, complete genome	6117-6152	3	0.917
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	AF489521	Lactococcus bacteriophage 4268, complete genome	6117-6152	3	0.917
CP029458_2	2.58\|1400085\|40\|CP029458\|CRT	1400085-1400124	40	NC_007581	Clostridium phage c-st, complete genome	922-961	3	0.925
CP029458_2	2.58\|1400085\|40\|CP029458\|CRT	1400085-1400124	40	AP008983	Clostridium phage c-st genomic DNA, complete genome	922-961	3	0.925
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448793	Streptococcus phage Javan523, complete genome	6281-6316	4	0.889
CP029458_2	2.54\|1399823\|41\|CP029458\|CRT	1399823-1399863	41	NC_015427	Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence	39126-39166	4	0.902
CP029458_2	2.56\|1399957\|39\|CP029458\|CRT	1399957-1399995	39	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	53406-53444	4	0.897
CP029458_2	2.58\|1400085\|40\|CP029458\|CRT	1400085-1400124	40	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	59000-59039	4	0.9
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MN689516	Lactococcus phage CHPC148, complete genome	24116-24151	5	0.861
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	AF242738	Bacteriophage phi LC3, complete genome	7540-7575	5	0.861
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NC_031040	Lactococcus phage 50101, complete genome	7446-7481	5	0.861
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NC_005822	Lactococcus phage phiLC3, complete genome	7540-7575	5	0.861
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	KX456212	Lactococcus phage 86501, complete genome	7446-7481	5	0.861
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	KY705255	Streptococcus phage P0095, complete genome	25188-25223	5	0.861
CP029458_2	2.55\|1399889\|43\|CP029458\|CRT	1399889-1399931	43	NC_007581	Clostridium phage c-st, complete genome	184289-184331	5	0.884
CP029458_2	2.55\|1399889\|43\|CP029458\|CRT	1399889-1399931	43	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	54890-54932	5	0.884
CP029458_2	2.55\|1399889\|43\|CP029458\|CRT	1399889-1399931	43	AP008983	Clostridium phage c-st genomic DNA, complete genome	184289-184331	5	0.884
CP029458_2	2.56\|1399957\|39\|CP029458\|CRT	1399957-1399995	39	NC_007581	Clostridium phage c-st, complete genome	182805-182843	5	0.872
CP029458_2	2.56\|1399957\|39\|CP029458\|CRT	1399957-1399995	39	AP008983	Clostridium phage c-st genomic DNA, complete genome	182805-182843	5	0.872
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NC_048179	Salmonella phage ZCSE2, complete genome	42040-42075	5	0.861
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580769	Streptococcus phage L5A1, complete genome	27963-27998	6	0.833
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580768	Streptococcus phage C0, complete genome	24881-24916	6	0.833
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580765	Streptococcus phage A0, complete genome	24878-24913	6	0.833
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580759	Streptococcus phage 7A5, complete genome	27016-27051	6	0.833
CP029458_2	2.26\|1399962\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1399962-1399995	34	NC_020157	Anabaena cylindrica PCC 7122 plasmid pANACY.02, complete sequence	6802-6835	6	0.824
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	MN689516	Lactococcus phage CHPC148, complete genome	24116-24156	6	0.854
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NC_009816	Corynebacterium phage P1201, complete genome	64773-64808	6	0.833
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MN153503	Bacillus phage Chotacabras, complete genome	30196-30231	6	0.833
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MH853356	Streptococcus phage LF2, partial genome	10669-10704	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580769	Streptococcus phage L5A1, complete genome	27921-27956	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580768	Streptococcus phage C0, complete genome	24839-24874	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	KY705277	Streptococcus phage P7951, complete genome	26144-26179	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	KY705281	Streptococcus phage P7955, complete genome	28781-28816	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580765	Streptococcus phage A0, complete genome	24848-24883	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NZ_CP053812	Vibrio cholerae strain W6G plasmid pW6G, complete sequence	288068-288103	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NZ_CP053815	Vibrio cholerae strain W7G plasmid pW7G, complete sequence	243898-243933	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448971	Streptococcus phage Javan52, complete genome	9728-9763	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	KX160208	Lactococcus phage 53802, complete genome	6358-6393	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	AF323670	Bacteriophage bIL309, complete genome	8101-8136	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448879	Streptococcus phage Javan226, complete genome	6021-6056	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NC_002668	Lactococcus prophage bIL309, complete genome	8101-8136	7	0.806
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NC_013645	Streptococcus phage Abc2, complete genome	25988-26023	7	0.806
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	538297-538329	7	0.788
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	NC_004746	Lactococcus phage 4268, complete genome	6117-6157	7	0.829
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	AF489521	Lactococcus bacteriophage 4268, complete genome	6117-6157	7	0.829
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	MF580769	Streptococcus phage L5A1, complete genome	27963-28003	7	0.829
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	MF580768	Streptococcus phage C0, complete genome	24881-24921	7	0.829
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	MF580765	Streptococcus phage A0, complete genome	24878-24918	7	0.829
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	MF580759	Streptococcus phage 7A5, complete genome	27016-27056	7	0.829
CP029458_3	3.5\|1410939\|34\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1410939-1410972	34	NC_019529	Vibrio phage pVp-1, complete genome	98594-98627	7	0.794
CP029458_3	3.13\|1411462\|35\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1411462-1411496	35	NZ_MK275623	Clostridium perfringens strain JXJA17 plasmid p5, complete sequence	27155-27189	7	0.8
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MN689509	Lactococcus phage CHPC1175, complete genome	27272-27307	8	0.778
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MN689521	Lactococcus phage CHPC836, complete genome	29240-29275	8	0.778
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448644	Streptococcus satellite phage Javan756, complete genome	6349-6384	8	0.778
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NC_047914	Faecalibacterium phage FP_Taranis, complete genome	8001-8036	8	0.778
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448318	Streptococcus satellite phage Javan106, complete genome	3554-3589	8	0.778
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448317	Streptococcus satellite phage Javan103, complete genome	3554-3589	8	0.778
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448532	Streptococcus satellite phage Javan545, complete genome	6703-6738	8	0.778
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448319	Streptococcus satellite phage Javan109, complete genome	3554-3589	8	0.778
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	MN693878	Marine virus AFVG_250M440, complete genome	18025-18057	8	0.758
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	MN694645	Marine virus AFVG_250M761, complete genome	17899-17931	8	0.758
CP029458_2	2.29\|1400155\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1400155-1400188	34	AY855346	Clostridium difficile bacteriophage phi CD119, complete genome	9702-9735	8	0.765
CP029458_2	2.29\|1400155\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1400155-1400188	34	NC_007917	Clostridium phage phi CD119, complete genome	9702-9735	8	0.765
CP029458_2	2.29\|1400155\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1400155-1400188	34	NC_028996	Clostridium phage phiCDHM19, complete genome	9948-9981	8	0.765
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	MK448793	Streptococcus phage Javan523, complete genome	6281-6321	8	0.805
CP029458_3	3.28\|1412444\|37\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1412444-1412480	37	MH059636	Erwinia phage Cronus, complete genome	27851-27887	8	0.784
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448428	Streptococcus satellite phage Javan322, complete genome	7640-7675	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448624	Streptococcus satellite phage Javan737, complete genome	6351-6386	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775692	Lactococcus phage LP0202, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775683	Lactococcus phage LP9701, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775680	Lactococcus phage LP9405b, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775673	Lactococcus phage LP9206a, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775677	Lactococcus phage LP9210, complete genome	568-603	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775688	Lactococcus phage LP0004b, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775670	Lactococcus phage LP9104, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775671	Lactococcus phage LP9205a, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775694	Lactococcus phage LP0212, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NC_049398	Lactococcus phage 16802, complete genome	575-610	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775696	Lactococcus phage LP0509, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775701	Lactococcus phage LP1110, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775674	Lactococcus phage LP9206b, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775693	Lactococcus phage LP0209, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775687	Lactococcus phage LP0004a, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775697	Lactococcus phage LP0604, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775686	Lactococcus phage LP9908, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775682	Lactococcus phage LP9609, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775699	Lactococcus phage LP1005, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775700	Lactococcus phage LP1011, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775685	Lactococcus phage LP9903, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NC_049423	Lactococcus phage LP0903, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775679	Lactococcus phage LP9405a, complete genome	577-612	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775676	Lactococcus phage LP9207, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775691	Lactococcus phage LP0109, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775690	Lactococcus phage LP0004d, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775684	Lactococcus phage LP9801, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NC_049416	Lactococcus phage LP8511, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775675	Lactococcus phage LP9206c, complete genome	566-601	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775678	Lactococcus phage LP9404, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775702	Lactococcus phage LP1407, complete genome	537-572	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775681	Lactococcus phage LP9406, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NC_049413	Lactococcus phage 96401, complete genome	566-601	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775689	Lactococcus phage LP0004c, complete genome	557-592	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775672	Lactococcus phage LP9205b, complete genome	567-602	9	0.75
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF775695	Lactococcus phage LP0304, complete genome	557-592	9	0.75
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	NC_014172	Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence	41534-41566	9	0.727
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	NZ_CP009595	Bacillus cereus strain 3a plasmid pBFC_3, complete sequence	206100-206132	9	0.727
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	NZ_CP047086	Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence	174967-174999	9	0.727
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	NZ_CP009606	Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence	72335-72367	9	0.727
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	NC_011655	Bacillus cereus AH187 plasmid pAH187_270, complete sequence	252107-252139	9	0.727
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	NC_010924	Bacillus cereus strain AH187 plasmid pCER270, complete sequence	38434-38466	9	0.727
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	CP045776	Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence	27749-27781	9	0.727
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	NZ_CP053994	Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence	146106-146138	9	0.727
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	NC_016792	Bacillus cereus NC7401 plasmid pNCcld, complete sequence	37303-37335	9	0.727
CP029458_2	2.15\|1399240\|33\|CP029458\|CRISPRCasFinder,PILER-CR	1399240-1399272	33	NZ_CP053992	Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence	129122-129154	9	0.727
CP029458_2	2.31\|1400284\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1400284-1400317	34	CP017837	Proteobacteria phage MWH-Nonnen-W8red 2 genome	39883-39916	9	0.735
CP029458_2	2.31\|1400284\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1400284-1400317	34	NC_019526	Enterobacteria phage vB_KleM-RaK2, complete genome	256179-256212	9	0.735
CP029458_2	2.31\|1400284\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1400284-1400317	34	MT708547	Klebsiella phage Muenster, complete genome	30680-30713	9	0.735
CP029458_2	2.31\|1400284\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1400284-1400317	34	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	674209-674242	9	0.735
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	AF242738	Bacteriophage phi LC3, complete genome	7540-7580	9	0.78
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	NC_031040	Lactococcus phage 50101, complete genome	7446-7486	9	0.78
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	NC_005822	Lactococcus phage phiLC3, complete genome	7540-7580	9	0.78
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	KX456212	Lactococcus phage 86501, complete genome	7446-7486	9	0.78
CP029458_3	3.6\|1411003\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1411003-1411038	36	MN693440	Marine virus AFVG_25M540, complete genome	19817-19852	9	0.75
CP029458_3	3.20\|1411918\|35\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1411918-1411952	35	LC557520	Staphylococcus phage vB_SsapH-Golestan101-M DNA, complete genome	72555-72589	9	0.743
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	CP033547	Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-2, complete sequence	11307-11342	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP029611	Acinetobacter pittii strain ST220 plasmid unnamed, complete sequence	25478-25513	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP026415	Acinetobacter sp. ACNIH2 plasmid pACI-55cf, complete sequence	37770-37805	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_AP018825	Acinetobacter ursingii strain M3 plasmid pAURM-1, complete sequence	1268-1303	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	CP033526	Acinetobacter pittii strain 2014N05-125 plasmid p2014N05-125-1, complete sequence	10940-10975	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_LN833432	Acinetobacter baumannii isolate CHI-32 plasmid pNDM-32, complete sequence	37211-37246	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP031977	Acinetobacter haemolyticus strain AN43 plasmid pAhaemAN43b, complete sequence	83284-83319	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP031992	Acinetobacter haemolyticus strain 2126ch plasmid pAhaem2126chf, complete sequence	70354-70389	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	CP033558	Acinetobacter nosocomialis strain 2012C01-137 plasmid p2012C01-137-1, complete sequence	77200-77235	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP031973	Acinetobacter haemolyticus strain AN59 plasmid pAhaemAN59c, complete sequence	81999-82034	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP032003	Acinetobacter haemolyticus strain 11616 plasmid pAhaem11616f, complete sequence	86424-86459	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP028560	Acinetobacter sp. WCHA45 plasmid pNDM1_010045, complete sequence	189895-189930	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	CP033537	Acinetobacter pittii strain 2012N21-164 plasmid p2012N21-164-2, complete sequence	5703-5738	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP026086	Acinetobacter pittii strain WCHAP005069 plasmid pOXA58_005069, complete sequence	101334-101369	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP028573	Acinetobacter pittii strain WCHAP005046 plasmid pOXA58_005046, complete sequence	61476-61511	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP021429	Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence	95558-95593	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP027249	Acinetobacter pittii strain WCHAP100004 plasmid pOXA58_100004, complete sequence	105316-105351	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP027253	Acinetobacter pittii strain WCHAP100020 plasmid pOXA58_100020, complete sequence	23743-23778	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP040913	Acinetobacter pittii strain AB17H194 plasmid pAB17H194-2, complete sequence	73333-73368	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP014652	Acinetobacter sp. DUT-2 plasmid unnamed1, complete sequence	126320-126355	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP031980	Acinetobacter haemolyticus strain AN4 plasmid pAhaemAN4d, complete sequence	107568-107603	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_CP018872	Acinetobacter haemolyticus strain TJS01 plasmid pAHTJS1, complete sequence	101-136	9	0.75
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	KX077895	Streptococcus phage phiZJ20091101-4, complete genome	28416-28451	9	0.75
CP029458_2	2.9\|1398846\|35\|CP029458\|CRISPRCasFinder	1398846-1398880	35	NZ_CP034685	Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence	117445-117479	10	0.714
CP029458_2	2.9\|1398846\|35\|CP029458\|CRISPRCasFinder	1398846-1398880	35	NZ_CP043832	Bacillus sp. BS98 plasmid unnamed2	84161-84195	10	0.714
CP029458_2	2.9\|1398846\|35\|CP029458\|CRISPRCasFinder	1398846-1398880	35	NZ_CP020434	Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence	229412-229446	10	0.714
CP029458_2	2.13\|1399109\|35\|CP029458\|CRISPRCasFinder,PILER-CR	1399109-1399143	35	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	297981-298015	10	0.714
CP029458_2	2.13\|1399109\|35\|CP029458\|CRISPRCasFinder,PILER-CR	1399109-1399143	35	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	428131-428165	10	0.714
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	KX879642	Streptococcus phage CHPC926, complete genome	21990-22025	10	0.722
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MH937494	Streptococcus phage CHPC1042, complete genome	31300-31335	10	0.722
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580759	Streptococcus phage 7A5, complete genome	26914-26949	10	0.722
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448383	Streptococcus satellite phage Javan248, complete genome	3294-3329	10	0.722
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448971	Streptococcus phage Javan52, complete genome	9704-9739	10	0.722
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448432	Streptococcus satellite phage Javan327, complete genome	6498-6533	10	0.722
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448844	Streptococcus phage Javan116, complete genome	5394-5429	10	0.722
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	220001-220036	10	0.722
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF417888	Uncultured Caudovirales phage clone 9S_3, partial genome	40996-41031	10	0.722
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MN855637	Bacteriophage sp. isolate 32, complete genome	27275-27310	10	0.722
CP029458_2	2.31\|1400284\|34\|CP029458\|CRISPRCasFinder,PILER-CR	1400284-1400317	34	MH319746	Marine virus AG-345-E15 Ga0172270_16 genomic sequence	11735-11768	10	0.706
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	MK448383	Streptococcus satellite phage Javan248, complete genome	3294-3334	10	0.756
CP029458_2	2.56\|1399957\|39\|CP029458\|CRT	1399957-1399995	39	NC_020157	Anabaena cylindrica PCC 7122 plasmid pANACY.02, complete sequence	6797-6835	10	0.744
CP029458_3	3.16\|1411659\|35\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1411659-1411693	35	NC_010377	Yersinia enterocolitica plasmid pYE854, complete sequence	73672-73706	10	0.714
CP029458_3	3.16\|1411659\|35\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1411659-1411693	35	NZ_CP011119	Yersinia enterocolitica strain FORC_002 plasmid pFORC2, complete sequence	24027-24061	10	0.714
CP029458_3	3.37\|1413035\|35\|CP029458\|CRISPRCasFinder,CRT	1413035-1413069	35	NZ_CP054577	Staphylococcus saprophyticus strain UTI-050 plasmid pUTI-050-2, complete sequence	8848-8882	10	0.714
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NZ_LR217731	Candidatus Erwinia haradaeae strain ErCipseudotsugae isolate 2889 plasmid pBioThi	3095-3130	10	0.722
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MH937482	Streptococcus phage CHPC982, partial genome	26434-26469	11	0.694
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580769	Streptococcus phage L5A1, complete genome	27867-27902	11	0.694
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580768	Streptococcus phage C0, complete genome	24785-24820	11	0.694
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MH937477	Streptococcus phage CHPC950, complete genome	26663-26698	11	0.694
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MF580765	Streptococcus phage A0, complete genome	24794-24829	11	0.694
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448617	Streptococcus satellite phage Javan730, complete genome	9068-9103	11	0.694
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448652	Streptococcus satellite phage Javan763, complete genome	8255-8290	11	0.694
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448625	Streptococcus satellite phage Javan738, complete genome	8161-8196	11	0.694
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MH937511	Streptococcus phage CHPC1247, complete genome	26649-26684	11	0.694
CP029458_2	2.14\|1399174\|36\|CP029458\|CRISPRCasFinder,PILER-CR	1399174-1399209	36	MK448636	Streptococcus satellite phage Javan749, complete genome	8312-8347	11	0.694
CP029458_2	2.28\|1400090\|35\|CP029458\|CRISPRCasFinder,PILER-CR	1400090-1400124	35	AP014316	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C31, * SEQUENCING IN PROGRESS *	16323-16357	11	0.686
CP029458_2	2.28\|1400090\|35\|CP029458\|CRISPRCasFinder,PILER-CR	1400090-1400124	35	MH598806	Pelagibacter phage HTVC119P, complete genome	14901-14935	11	0.686
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448946	Streptococcus phage Javan456, complete genome	14938-14973	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448852	Streptococcus phage Javan140, complete genome	11878-11913	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448871	Streptococcus phage Javan196, complete genome	12031-12066	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448784	Streptococcus phage Javan505, complete genome	12207-12242	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448952	Streptococcus phage Javan472, complete genome	11914-11949	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448779	Streptococcus phage Javan497, complete genome	11848-11883	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448947	Streptococcus phage Javan458, complete genome	12207-12242	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448976	Streptococcus phage Javan528, complete genome	12031-12066	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448961	Streptococcus phage Javan494, complete genome	12031-12066	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448697	Streptococcus phage Javan185, complete genome	12031-12066	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448968	Streptococcus phage Javan512, complete genome	11848-11883	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448693	Streptococcus phage Javan177, complete genome	12031-12066	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448766	Streptococcus phage Javan465, complete genome	12998-13033	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448696	Streptococcus phage Javan183, complete genome	12031-12066	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NC_009819	Streptococcus phage P9, complete genome	12014-12049	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448797	Streptococcus phage Javan531, complete genome	11848-11883	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448689	Streptococcus phage Javan163, complete genome	12206-12241	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448868	Streptococcus phage Javan188, complete genome	12031-12066	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448866	Streptococcus phage Javan184, complete genome	12031-12066	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448974	Streptococcus phage Javan524, complete genome	12207-12242	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448699	Streptococcus phage Javan189, complete genome	12031-12066	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448789	Streptococcus phage Javan513, complete genome	12206-12241	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448678	Streptococcus phage Javan135, complete genome	11822-11857	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	NC_004589	Streptococcus prophage 315.6, complete genome	11945-11980	11	0.694
CP029458_4	4.1\|1563663\|36\|CP029458\|PILER-CR,CRISPRCasFinder,CRT	1563663-1563698	36	MK448867	Streptococcus phage Javan186, complete genome	12031-12066	11	0.694
CP029458_2	2.44\|1399169\|41\|CP029458\|CRT	1399169-1399209	41	MK448428	Streptococcus satellite phage Javan322, complete genome	7640-7680	13	0.683

1. spacer 2.24|1399828|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_015427 (Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence) position: , mismatch: 0, identity: 1.0

tcggcagtaatgctagagaaataattctactaactg	CRISPR spacer
tcggcagtaatgctagagaaataattctactaactg	Protospacer
************************************

2. spacer 2.26|1399962|34|CP029458|CRISPRCasFinder,PILER-CR matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 0, identity: 1.0

aattaactattagacaaattaaattcgtaaacaa	CRISPR spacer
aattaactattagacaaattaaattcgtaaacaa	Protospacer
**********************************

3. spacer 2.26|1399962|34|CP029458|CRISPRCasFinder,PILER-CR matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 0, identity: 1.0

aattaactattagacaaattaaattcgtaaacaa	CRISPR spacer
aattaactattagacaaattaaattcgtaaacaa	Protospacer
**********************************

4. spacer 2.26|1399962|34|CP029458|CRISPRCasFinder,PILER-CR matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 0, identity: 1.0

aattaactattagacaaattaaattcgtaaacaa	CRISPR spacer
aattaactattagacaaattaaattcgtaaacaa	Protospacer
**********************************

5. spacer 2.28|1400090|35|CP029458|CRISPRCasFinder,PILER-CR matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 0, identity: 1.0

aacttttattaagtaaattacatgttacactttac	CRISPR spacer
aacttttattaagtaaattacatgttacactttac	Protospacer
***********************************

6. spacer 2.28|1400090|35|CP029458|CRISPRCasFinder,PILER-CR matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 0, identity: 1.0

aacttttattaagtaaattacatgttacactttac	CRISPR spacer
aacttttattaagtaaattacatgttacactttac	Protospacer
***********************************

7. spacer 3.32|1412709|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to ACSJ01000019 (Clostridium phage D-1873 CLG.Contig160, whole genome shotgun sequence) position: , mismatch: 0, identity: 1.0

tttaatgcaccattggaactgttaactgctttttta	CRISPR spacer
tttaatgcaccattggaactgttaactgctttttta	Protospacer
************************************

8. spacer 4.10|1564264|39|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 0, identity: 1.0

ctttcggttcttgtattttaattatgttatcttttttct	CRISPR spacer
ctttcggttcttgtattttaattatgttatcttttttct	Protospacer
***************************************

9. spacer 2.25|1399894|38|CP029458|CRISPRCasFinder,PILER-CR matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 1, identity: 0.974

caaaatgacagtcttatagcattatttattggaattat	CRISPR spacer
caaaataacagtcttatagcattatttattggaattat	Protospacer
******.*******************************

10. spacer 2.25|1399894|38|CP029458|CRISPRCasFinder,PILER-CR matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 1, identity: 0.974

caaaatgacagtcttatagcattatttattggaattat	CRISPR spacer
caaaatgacattcttatagcattatttattggaattat	Protospacer
********** ***************************

11. spacer 2.25|1399894|38|CP029458|CRISPRCasFinder,PILER-CR matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 1, identity: 0.974

caaaatgacagtcttatagcattatttattggaattat	CRISPR spacer
caaaataacagtcttatagcattatttattggaattat	Protospacer
******.*******************************

12. spacer 2.28|1400090|35|CP029458|CRISPRCasFinder,PILER-CR matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 1, identity: 0.971

aacttttattaagtaaattacatgttacactttac	CRISPR spacer
aacttttattaaataaattacatgttacactttac	Protospacer
************.**********************

13. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to X59040 (Clostridium botulinum D phage gene for exoenzyme C3) position: , mismatch: 1, identity: 0.972

atgtaataaatataaataataaatataaataactat	CRISPR spacer
atgtagtaaatataaataataaatataaataactat	Protospacer
*****.******************************

14. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to X59039 (Clostridium botulinum C phage gene for exoenzyme C3) position: , mismatch: 1, identity: 0.972

atgtaataaatataaataataaatataaataactat	CRISPR spacer
atgtagtaaatataaataataaatataaataactat	Protospacer
*****.******************************

15. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 1, identity: 0.972

atgtaataaatataaataataaatataaataactat	CRISPR spacer
atgtagtaaatataaataataaatataaataactat	Protospacer
*****.******************************

16. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 1, identity: 0.972

atgtaataaatataaataataaatataaataactat	CRISPR spacer
atgtagtaaatataaataataaatataaataactat	Protospacer
*****.******************************

17. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 1, identity: 0.972

atgtaataaatataaataataaatataaataactat	CRISPR spacer
atgtagtaaatataaataataaatataaataactat	Protospacer
*****.******************************

18. spacer 3.18|1411789|33|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 2, identity: 0.939

tatttaactaacaacctaacacataaaagttaa	CRISPR spacer
tatctaaccaacaacctaacacataaaagttaa	Protospacer
***.****.************************

19. spacer 3.18|1411789|33|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 2, identity: 0.939

tatttaactaacaacctaacacataaaagttaa	CRISPR spacer
tatctaaccaacaacctaacacataaaagttaa	Protospacer
***.****.************************

20. spacer 3.18|1411789|33|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 2, identity: 0.939

tatttaactaacaacctaacacataaaagttaa	CRISPR spacer
tatctaaccaacaacctaacacataaaagttaa	Protospacer
***.****.************************

21. spacer 3.37|1413035|35|CP029458|CRISPRCasFinder,CRT matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 2, identity: 0.943

tcttgttcacacattatttttagtaaccctttatc	CRISPR spacer
tcttgttcacacattatttttaacaaccctttatc	Protospacer
**********************..***********

22. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_004746 (Lactococcus phage 4268, complete genome) position: , mismatch: 3, identity: 0.917

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
atatctttctctttctctttctctttctctaactct	Protospacer
 ******* *** ***********************

23. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to AF489521 (Lactococcus bacteriophage 4268, complete genome) position: , mismatch: 3, identity: 0.917

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
atatctttctctttctctttctctttctctaactct	Protospacer
 ******* *** ***********************

24. spacer 2.58|1400085|40|CP029458|CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 3, identity: 0.925

taaataacttttattaagtaaattacatgttacactttac	CRISPR spacer
tatcaaacttttattaagtaaattacatgttacactttac	Protospacer
**   ***********************************

25. spacer 2.58|1400085|40|CP029458|CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 3, identity: 0.925

taaataacttttattaagtaaattacatgttacactttac	CRISPR spacer
tatcaaacttttattaagtaaattacatgttacactttac	Protospacer
**   ***********************************

26. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 4, identity: 0.889

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctctttatctaactctttctctttatctaactct	Protospacer
.* ********** ************ *********

27. spacer 2.54|1399823|41|CP029458|CRT matches to NC_015427 (Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence) position: , mismatch: 4, identity: 0.902

taaattcggcagtaatgctagagaaataattctactaactg	CRISPR spacer
tttcgtcggcagtaatgctagagaaataattctactaactg	Protospacer
*    ************************************

28. spacer 2.56|1399957|39|CP029458|CRT matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 4, identity: 0.897

taaataattaactattagacaaattaaattcgtaaacaa	CRISPR spacer
catcaaattaactattagacaaattaaattcgtaaacaa	Protospacer
.*   **********************************

29. spacer 2.58|1400085|40|CP029458|CRT matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 4, identity: 0.9

taaataacttttattaagtaaattacatgttacactttac	CRISPR spacer
tatcaaacttttattaaataaattacatgttacactttac	Protospacer
**   ************.**********************

30. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MN689516 (Lactococcus phage CHPC148, complete genome) position: , mismatch: 5, identity: 0.861

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
aactctatatctttctctttctctttctctaactct	Protospacer
   *** ***** ***********************

31. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to AF242738 (Bacteriophage phi LC3, complete genome) position: , mismatch: 5, identity: 0.861

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
acttctttatctatctctttctctatctctatctct	Protospacer
 . ********************* ****** ****

32. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_031040 (Lactococcus phage 50101, complete genome) position: , mismatch: 5, identity: 0.861

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
acttctttatctatctctttctctatctctatctct	Protospacer
 . ********************* ****** ****

33. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_005822 (Lactococcus phage phiLC3, complete genome) position: , mismatch: 5, identity: 0.861

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
acttctttatctatctctttctctatctctatctct	Protospacer
 . ********************* ****** ****

34. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to KX456212 (Lactococcus phage 86501, complete genome) position: , mismatch: 5, identity: 0.861

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
acttctttatctatctctttctctatctctatctct	Protospacer
 . ********************* ****** ****

35. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 5, identity: 0.861

ctatcttta-tctatctctttctctttctctaactct	CRISPR spacer
-tatatctattctatctctatctctttctctatctct	Protospacer
 *** *.** ********* ************ ****

36. spacer 2.55|1399889|43|CP029458|CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 5, identity: 0.884

taaatcaaaatgacagtcttatagcattatttattggaattat	CRISPR spacer
gatcacaaaataacagtcttatagcattatttattggaattat	Protospacer
 *   ******.*******************************

37. spacer 2.55|1399889|43|CP029458|CRT matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 5, identity: 0.884

taaatcaaaatgacagtcttatagcattatttattggaattat	CRISPR spacer
gatcacaaaatgacattcttatagcattatttattggaattat	Protospacer
 *   ********** ***************************

38. spacer 2.55|1399889|43|CP029458|CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 5, identity: 0.884

taaatcaaaatgacagtcttatagcattatttattggaattat	CRISPR spacer
gatcacaaaataacagtcttatagcattatttattggaattat	Protospacer
 *   ******.*******************************

39. spacer 2.56|1399957|39|CP029458|CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 5, identity: 0.872

taaataattaactattagacaaattaaattcgtaaacaa	CRISPR spacer
cgtcaaattaactattagacaaattaaattcgtaaacaa	Protospacer
..   **********************************

40. spacer 2.56|1399957|39|CP029458|CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 5, identity: 0.872

taaataattaactattagacaaattaaattcgtaaacaa	CRISPR spacer
cgtcaaattaactattagacaaattaaattcgtaaacaa	Protospacer
..   **********************************

41. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NC_048179 (Salmonella phage ZCSE2, complete genome) position: , mismatch: 5, identity: 0.861

-atgtaataaatataaataataaatataaataactat	CRISPR spacer
aatat-ataaatatatataataaatataaataataat	Protospacer
 **.* ********* *****************. **

42. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580769 (Streptococcus phage L5A1, complete genome) position: , mismatch: 6, identity: 0.833

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
gtctttatatctatctctttctctatctctatctct	Protospacer
 * *.* ***************** ****** ****

43. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580768 (Streptococcus phage C0, complete genome) position: , mismatch: 6, identity: 0.833

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
gtctttatatctatctctttctctatctctatctct	Protospacer
 * *.* ***************** ****** ****

44. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580765 (Streptococcus phage A0, complete genome) position: , mismatch: 6, identity: 0.833

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
gtctttatatctatctctttctctatctctatctct	Protospacer
 * *.* ***************** ****** ****

45. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580759 (Streptococcus phage 7A5, complete genome) position: , mismatch: 6, identity: 0.833

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
gtctttatatctatctctttctctatctctatctct	Protospacer
 * *.* ***************** ****** ****

46. spacer 2.26|1399962|34|CP029458|CRISPRCasFinder,PILER-CR matches to NC_020157 (Anabaena cylindrica PCC 7122 plasmid pANACY.02, complete sequence) position: , mismatch: 6, identity: 0.824

aattaactattagacaaattaaattcgtaaacaa	CRISPR spacer
aaatagctattagacaaattaaattcgttatcgc	Protospacer
** **.********************** * *.

47. spacer 2.44|1399169|41|CP029458|CRT matches to MN689516 (Lactococcus phage CHPC148, complete genome) position: , mismatch: 6, identity: 0.854

----taaatctatctttatctatctctttctctttctctaactct	CRISPR spacer
tctttaactcta----tatctttctctttctctttctctaactct	Protospacer
    *** ****    ***** ***********************

48. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NC_009816 (Corynebacterium phage P1201, complete genome) position: , mismatch: 6, identity: 0.833

atgtaataaatataaataataaatataaataactat-	CRISPR spacer
aataaataaatataaataataaataaatataa-tata	Protospacer
*   ********************* * **** ***

49. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MN153503 (Bacillus phage Chotacabras, complete genome) position: , mismatch: 6, identity: 0.833

atgtaa-taaatataaataataaatataaataactat	CRISPR spacer
-tgtaattaaatattaataataaatattaataataaa	Protospacer
 ***** ******* ************ *****. *

50. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctctttatctttctctttatctttctctttatct	Protospacer
.* ********* ******* *********   ***

51. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580769 (Streptococcus phage L5A1, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
atctctttctctatctctttctctatctctttcttt	Protospacer
 * ***** *************** *****  **.*

52. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580768 (Streptococcus phage C0, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
atctctttctctatctctttctctatctctttcttt	Protospacer
 * ***** *************** *****  **.*

53. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to KY705277 (Streptococcus phage P7951, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
gtctttatctctatctctttctctatctctatctct	Protospacer
 * *.* * *************** ****** ****

54. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to KY705281 (Streptococcus phage P7955, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
gtctttatctctatctctttctctatctctatctct	Protospacer
 * *.* * *************** ****** ****

55. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580765 (Streptococcus phage A0, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
atctctttctctatctctttctctatctctttcttt	Protospacer
 * ***** *************** *****  **.*

56. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP053812 (Vibrio cholerae strain W6G plasmid pW6G, complete sequence) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctctttctctttctctttctctttctctttcact	Protospacer
.* ***** *** *****************  * **

57. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP053815 (Vibrio cholerae strain W7G plasmid pW7G, complete sequence) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctctttctctttctctttctctttctctttcact	Protospacer
.* ***** *** *****************  * **

58. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctctttatctttctctttatctttctctttatct	Protospacer
.* ********* ******* *********   ***

59. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to KX160208 (Lactococcus phage 53802, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctttaactctatatctttctctttctctaactct	Protospacer
.* *.*   ***** *********************

60. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to AF323670 (Bacteriophage bIL309, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctttagctctatatctttctctttctctaactct	Protospacer
.* *.*   ***** *********************

61. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448879 (Streptococcus phage Javan226, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttttctaactctatctctttctctatctctatctct	Protospacer
.* ***   *************** ****** ****

62. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_002668 (Lactococcus prophage bIL309, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctttagctctatatctttctctttctctaactct	Protospacer
.* *.*   ***** *********************

63. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_013645 (Streptococcus phage Abc2, complete genome) position: , mismatch: 7, identity: 0.806

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
atctatatctctatctctttctctatctctatctct	Protospacer
 * * * * *************** ****** ****

64. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 7, identity: 0.788

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
ttattatttatcttttatcttctattaatttaa	Protospacer
 ***.  ********* **** ********* *

65. spacer 2.44|1399169|41|CP029458|CRT matches to NC_004746 (Lactococcus phage 4268, complete genome) position: , mismatch: 7, identity: 0.829

taaatctatctttatctatctctttctctttctctaactct	CRISPR spacer
actctatatctttctctttctctttctctttctctaactct	Protospacer
    * ******* *** ***********************

66. spacer 2.44|1399169|41|CP029458|CRT matches to AF489521 (Lactococcus bacteriophage 4268, complete genome) position: , mismatch: 7, identity: 0.829

taaatctatctttatctatctctttctctttctctaactct	CRISPR spacer
actctatatctttctctttctctttctctttctctaactct	Protospacer
    * ******* *** ***********************

67. spacer 2.44|1399169|41|CP029458|CRT matches to MF580769 (Streptococcus phage L5A1, complete genome) position: , mismatch: 7, identity: 0.829

taaatctatctt--tatctatctctttctctttctctaactct	CRISPR spacer
--cttctgtctttatatctatctctttctctatctctatctct	Protospacer
    ***.****  ***************** ****** ****

68. spacer 2.44|1399169|41|CP029458|CRT matches to MF580768 (Streptococcus phage C0, complete genome) position: , mismatch: 7, identity: 0.829

taaatctatctt--tatctatctctttctctttctctaactct	CRISPR spacer
--cttctgtctttatatctatctctttctctatctctatctct	Protospacer
    ***.****  ***************** ****** ****

69. spacer 2.44|1399169|41|CP029458|CRT matches to MF580765 (Streptococcus phage A0, complete genome) position: , mismatch: 7, identity: 0.829

taaatctatctt--tatctatctctttctctttctctaactct	CRISPR spacer
--cttctgtctttatatctatctctttctctatctctatctct	Protospacer
    ***.****  ***************** ****** ****

70. spacer 2.44|1399169|41|CP029458|CRT matches to MF580759 (Streptococcus phage 7A5, complete genome) position: , mismatch: 7, identity: 0.829

taaatctatctt--tatctatctctttctctttctctaactct	CRISPR spacer
--cttctgtctttatatctatctctttctctatctctatctct	Protospacer
    ***.****  ***************** ****** ****

71. spacer 3.5|1410939|34|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NC_019529 (Vibrio phage pVp-1, complete genome) position: , mismatch: 7, identity: 0.794

---ctagtttgtattactttaagtctgtttatagcac	CRISPR spacer
tccttagt---cataactttaagtctggttatagcac	Protospacer
   .****   .** ************ *********

72. spacer 3.13|1411462|35|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK275623 (Clostridium perfringens strain JXJA17 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.8

agtgataataaatggcttatatttgtaagcaataa	CRISPR spacer
acagatgataaatggcttatatttgtaacttctaa	Protospacer
*  ***.********************* .  ***

73. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 8, identity: 0.778

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctttaactctatctctttctctttctctttctct	Protospacer
.* *.*   *********************  ****

74. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MN689521 (Lactococcus phage CHPC836, complete genome) position: , mismatch: 8, identity: 0.778

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctttaactctatatctttctctttctctatctct	Protospacer
.* *.*   ***** **************** ****

75. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448644 (Streptococcus satellite phage Javan756, complete genome) position: , mismatch: 8, identity: 0.778

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
atctctttctctatctctttctctatctctgtctta	Protospacer
 * ***** *************** *****. **.

76. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_047914 (Faecalibacterium phage FP_Taranis, complete genome) position: , mismatch: 8, identity: 0.778

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctctttatctatctctatctctttctctgtatgg	Protospacer
.* *************** ***********.  *

77. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448318 (Streptococcus satellite phage Javan106, complete genome) position: , mismatch: 8, identity: 0.778

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
tcttctaactctatctctatctctttctctatctct	Protospacer
.. ***   ********* ************ ****

78. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448317 (Streptococcus satellite phage Javan103, complete genome) position: , mismatch: 8, identity: 0.778

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
tcttctaactctatctctatctctttctctatctct	Protospacer
.. ***   ********* ************ ****

79. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448532 (Streptococcus satellite phage Javan545, complete genome) position: , mismatch: 8, identity: 0.778

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
tcttctgactctatctctttctctatctctatctct	Protospacer
.. ***   *************** ****** ****

80. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448319 (Streptococcus satellite phage Javan109, complete genome) position: , mismatch: 8, identity: 0.778

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
tcttctaactctatctctatctctttctctatctct	Protospacer
.. ***   ********* ************ ****

81. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to MN693878 (Marine virus AFVG_250M440, complete genome) position: , mismatch: 8, identity: 0.758

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
cactttctaatcttttttctaatactaatttta	Protospacer
   *.* * *********** ***.********

82. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 8, identity: 0.758

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
cactttctaatcttttttctaatactaatttta	Protospacer
   *.* * *********** ***.********

83. spacer 2.29|1400155|34|CP029458|CRISPRCasFinder,PILER-CR matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 8, identity: 0.765

tttaatagaaggagtgattaaatg---aggttataca	CRISPR spacer
tttaaaggaaggagtgattaaatggctggattag---	Protospacer
***** .*****************   .*.***

84. spacer 2.29|1400155|34|CP029458|CRISPRCasFinder,PILER-CR matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 8, identity: 0.765

tttaatagaaggagtgattaaatg---aggttataca	CRISPR spacer
tttaaaggaaggagtgattaaatggctggattag---	Protospacer
***** .*****************   .*.***

85. spacer 2.29|1400155|34|CP029458|CRISPRCasFinder,PILER-CR matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 8, identity: 0.765

tttaatagaaggagtgattaaatg---aggttataca	CRISPR spacer
tttaaaggaaggagtgattaaatggctggattag---	Protospacer
***** .*****************   .*.***

86. spacer 2.44|1399169|41|CP029458|CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 8, identity: 0.805

taaatctatctttatctatctctttctctttctctaactct	CRISPR spacer
attctttctctttatctaactctttctctttatctaactct	Protospacer
    *.* ********** ************ *********

87. spacer 3.28|1412444|37|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MH059636 (Erwinia phage Cronus, complete genome) position: , mismatch: 8, identity: 0.784

tatattact-aattcttcttctatagtaaagctatatt	CRISPR spacer
-gtctcattgaattcttcgtctaaagtaaagctataat	Protospacer
 .* *.*.* ******** **** ************ *

88. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448428 (Streptococcus satellite phage Javan322, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctctctttatctatctctttctctgtcttacatgta	Protospacer
** ********************* ***.  *. .

89. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448624 (Streptococcus satellite phage Javan737, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
aactctttctctatctctttctctatctctgtctta	Protospacer
   ***** *************** *****. **.

90. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775692 (Lactococcus phage LP0202, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

91. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775683 (Lactococcus phage LP9701, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

92. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775680 (Lactococcus phage LP9405b, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

93. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775673 (Lactococcus phage LP9206a, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

94. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775677 (Lactococcus phage LP9210, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

95. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775688 (Lactococcus phage LP0004b, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

96. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775670 (Lactococcus phage LP9104, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

97. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775671 (Lactococcus phage LP9205a, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

98. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775694 (Lactococcus phage LP0212, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

99. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_049398 (Lactococcus phage 16802, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatccatctctttttctttaacctttact	Protospacer
***********.********.*****  *.  . **

100. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775696 (Lactococcus phage LP0509, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

101. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775701 (Lactococcus phage LP1110, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

102. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775674 (Lactococcus phage LP9206b, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

103. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775693 (Lactococcus phage LP0209, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

104. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775687 (Lactococcus phage LP0004a, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

105. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775697 (Lactococcus phage LP0604, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

106. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775686 (Lactococcus phage LP9908, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

107. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775682 (Lactococcus phage LP9609, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

108. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775699 (Lactococcus phage LP1005, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

109. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775700 (Lactococcus phage LP1011, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

110. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775685 (Lactococcus phage LP9903, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

111. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_049423 (Lactococcus phage LP0903, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

112. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775679 (Lactococcus phage LP9405a, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

113. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775676 (Lactococcus phage LP9207, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

114. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775691 (Lactococcus phage LP0109, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

115. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775690 (Lactococcus phage LP0004d, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

116. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775684 (Lactococcus phage LP9801, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

117. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_049416 (Lactococcus phage LP8511, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

118. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775675 (Lactococcus phage LP9206c, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

119. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775678 (Lactococcus phage LP9404, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

120. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775702 (Lactococcus phage LP1407, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

121. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775681 (Lactococcus phage LP9406, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

122. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NC_049413 (Lactococcus phage 96401, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatccatctctttttctttaacctttact	Protospacer
***********.********.*****  *.  . **

123. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775689 (Lactococcus phage LP0004c, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

124. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775672 (Lactococcus phage LP9205b, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

125. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF775695 (Lactococcus phage LP0304, complete genome) position: , mismatch: 9, identity: 0.75

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ctatctttatctagctctttttctttaacctttact	Protospacer
************* ******.*****  *.  . **

126. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to NC_014172 (Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence) position: , mismatch: 9, identity: 0.727

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
acttgccttctcttttttcttctattaatttaa	Protospacer
.. * . ** *********** ********* *

127. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP009595 (Bacillus cereus strain 3a plasmid pBFC_3, complete sequence) position: , mismatch: 9, identity: 0.727

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
acttgccttctcttttttcttctattaatttaa	Protospacer
.. * . ** *********** ********* *

128. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP047086 (Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence) position: , mismatch: 9, identity: 0.727

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
acttaccttctcttttttcttctattaatttaa	Protospacer
.. * . ** *********** ********* *

129. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP009606 (Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence) position: , mismatch: 9, identity: 0.727

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
acttgccttctcttttttcttctattaatttaa	Protospacer
.. * . ** *********** ********* *

130. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to NC_011655 (Bacillus cereus AH187 plasmid pAH187_270, complete sequence) position: , mismatch: 9, identity: 0.727

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
acttaccttctcttttttcttctattaatttaa	Protospacer
.. * . ** *********** ********* *

131. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to NC_010924 (Bacillus cereus strain AH187 plasmid pCER270, complete sequence) position: , mismatch: 9, identity: 0.727

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
acttaccttctcttttttcttctattaatttaa	Protospacer
.. * . ** *********** ********* *

132. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to CP045776 (Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence) position: , mismatch: 9, identity: 0.727

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
acttaccttctcttttttcttctattaatttaa	Protospacer
.. * . ** *********** ********* *

133. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP053994 (Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
acttgccttctcttttttcttctattaatttaa	Protospacer
.. * . ** *********** ********* *

134. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to NC_016792 (Bacillus cereus NC7401 plasmid pNCcld, complete sequence) position: , mismatch: 9, identity: 0.727

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
acttaccttctcttttttcttctattaatttaa	Protospacer
.. * . ** *********** ********* *

135. spacer 2.15|1399240|33|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP053992 (Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

gtatctgttatcttttttcttatattaatttta	CRISPR spacer
acttgccttctcttttttcttctattaatttaa	Protospacer
.. * . ** *********** ********* *

136. spacer 2.31|1400284|34|CP029458|CRISPRCasFinder,PILER-CR matches to CP017837 (Proteobacteria phage MWH-Nonnen-W8red 2 genome) position: , mismatch: 9, identity: 0.735

gtgttaaaaacaattttatcttcatctattacaa	CRISPR spacer
aaatacgaaacaattttagctacatctattacac	Protospacer
. .*  .*********** ** ***********

137. spacer 2.31|1400284|34|CP029458|CRISPRCasFinder,PILER-CR matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 9, identity: 0.735

gtgttaaaaacaattttatcttcatctattacaa	CRISPR spacer
ttaattgatacaattttatctttatgtattacag	Protospacer
 *. * .* *************.** *******.

138. spacer 2.31|1400284|34|CP029458|CRISPRCasFinder,PILER-CR matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 9, identity: 0.735

gtgttaaaaacaattttatcttcatctattacaa	CRISPR spacer
ttaattgatacaattttatctttatgtattacag	Protospacer
 *. * .* *************.** *******.

139. spacer 2.31|1400284|34|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.735

-----gtgttaaaaacaattttatcttcatctattacaa	CRISPR spacer
actatctctt-----caattttatcttcatctatcaaaa	Protospacer
      * **     *******************.* **

140. spacer 2.44|1399169|41|CP029458|CRT matches to AF242738 (Bacteriophage phi LC3, complete genome) position: , mismatch: 9, identity: 0.78

taaatctatctttatctatctctttctctttctctaactct	CRISPR spacer
cttctacttctttatctatctctttctctatctctatctct	Protospacer
.   * . ********************* ****** ****

141. spacer 2.44|1399169|41|CP029458|CRT matches to NC_031040 (Lactococcus phage 50101, complete genome) position: , mismatch: 9, identity: 0.78

taaatctatctttatctatctctttctctttctctaactct	CRISPR spacer
cttctacttctttatctatctctttctctatctctatctct	Protospacer
.   * . ********************* ****** ****

142. spacer 2.44|1399169|41|CP029458|CRT matches to NC_005822 (Lactococcus phage phiLC3, complete genome) position: , mismatch: 9, identity: 0.78

taaatctatctttatctatctctttctctttctctaactct	CRISPR spacer
cttctacttctttatctatctctttctctatctctatctct	Protospacer
.   * . ********************* ****** ****

143. spacer 2.44|1399169|41|CP029458|CRT matches to KX456212 (Lactococcus phage 86501, complete genome) position: , mismatch: 9, identity: 0.78

taaatctatctttatctatctctttctctttctctaactct	CRISPR spacer
cttctacttctttatctatctctttctctatctctatctct	Protospacer
.   * . ********************* ****** ****

144. spacer 3.6|1411003|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MN693440 (Marine virus AFVG_25M540, complete genome) position: , mismatch: 9, identity: 0.75

aatttataatta-----tcatttagaactgttgtaataata	CRISPR spacer
-----gtaattatattttcatttagaactgttgaaataaat	Protospacer
     .******     **************** *****

145. spacer 3.20|1411918|35|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to LC557520 (Staphylococcus phage vB_SsapH-Golestan101-M DNA, complete genome) position: , mismatch: 9, identity: 0.743

gaaaaatatagctaatagaataggtactgtaaaca	CRISPR spacer
aaaaaatataggtaataaaataggtaacttaatag	Protospacer
.********** *****.******** . ***  .

146. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to CP033547 (Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-2, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

147. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029611 (Acinetobacter pittii strain ST220 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

148. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026415 (Acinetobacter sp. ACNIH2 plasmid pACI-55cf, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

149. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018825 (Acinetobacter ursingii strain M3 plasmid pAURM-1, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

150. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to CP033526 (Acinetobacter pittii strain 2014N05-125 plasmid p2014N05-125-1, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

151. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN833432 (Acinetobacter baumannii isolate CHI-32 plasmid pNDM-32, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

152. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031977 (Acinetobacter haemolyticus strain AN43 plasmid pAhaemAN43b, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

153. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031992 (Acinetobacter haemolyticus strain 2126ch plasmid pAhaem2126chf, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

154. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to CP033558 (Acinetobacter nosocomialis strain 2012C01-137 plasmid p2012C01-137-1, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

155. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031973 (Acinetobacter haemolyticus strain AN59 plasmid pAhaemAN59c, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

156. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032003 (Acinetobacter haemolyticus strain 11616 plasmid pAhaem11616f, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

157. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028560 (Acinetobacter sp. WCHA45 plasmid pNDM1_010045, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

158. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to CP033537 (Acinetobacter pittii strain 2012N21-164 plasmid p2012N21-164-2, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

159. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026086 (Acinetobacter pittii strain WCHAP005069 plasmid pOXA58_005069, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

160. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028573 (Acinetobacter pittii strain WCHAP005046 plasmid pOXA58_005046, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

161. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021429 (Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

162. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027249 (Acinetobacter pittii strain WCHAP100004 plasmid pOXA58_100004, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

163. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027253 (Acinetobacter pittii strain WCHAP100020 plasmid pOXA58_100020, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

164. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040913 (Acinetobacter pittii strain AB17H194 plasmid pAB17H194-2, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

165. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014652 (Acinetobacter sp. DUT-2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

166. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031980 (Acinetobacter haemolyticus strain AN4 plasmid pAhaemAN4d, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

167. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018872 (Acinetobacter haemolyticus strain TJS01 plasmid pAHTJS1, complete sequence) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
tgagcagagatataaataataaatttaaataaatat	Protospacer
  .  * *.*************** ******* ***

168. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to KX077895 (Streptococcus phage phiZJ20091101-4, complete genome) position: , mismatch: 9, identity: 0.75

atgtaataaatataaataataaatataaataactat	CRISPR spacer
aaattataaatataaaaaatatatataaatagaaaa	Protospacer
* .* *********** **** *********.  *

169. spacer 2.9|1398846|35|CP029458|CRISPRCasFinder matches to NZ_CP034685 (Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence) position: , mismatch: 10, identity: 0.714

acctaaaaattatgaagctccagttaaaagttgaa	CRISPR spacer
gatcaaaaattatgaagcggcagttaaaacaagag	Protospacer
. ..**************  *********   **.

170. spacer 2.9|1398846|35|CP029458|CRISPRCasFinder matches to NZ_CP043832 (Bacillus sp. BS98 plasmid unnamed2) position: , mismatch: 10, identity: 0.714

acctaaaaattatgaagctccagttaaaagttgaa	CRISPR spacer
gatcaaaaattatgaagcggcagttaaaacaagag	Protospacer
. ..**************  *********   **.

171. spacer 2.9|1398846|35|CP029458|CRISPRCasFinder matches to NZ_CP020434 (Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.714

acctaaaaattatgaagctccagttaaaagttgaa	CRISPR spacer
gatcaaaaattatgaagcggcagttaaaacaagag	Protospacer
. ..**************  *********   **.

172. spacer 2.13|1399109|35|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

tatattattcctcctttaattaaagaaaatattca	CRISPR spacer
actgttattcctccttaaataaaagaaaagaacgt	Protospacer
  *.************ *** ******** * .

173. spacer 2.13|1399109|35|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

tatattattcctcctttaattaaagaaaatattca	CRISPR spacer
actgttattcctccttaaataaaagaaaagaacgt	Protospacer
  *.************ *** ******** * .

174. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to KX879642 (Streptococcus phage CHPC926, complete genome) position: , mismatch: 10, identity: 0.722

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------ttctctttctctatctctttctctatctctgttgga	Protospacer
      ** *** ***** ************ ****

175. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MH937494 (Streptococcus phage CHPC1042, complete genome) position: , mismatch: 10, identity: 0.722

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
atctctttctctatctctatctctttctctgttgga	Protospacer
 * ***** ********* ***********. .

176. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580759 (Streptococcus phage 7A5, complete genome) position: , mismatch: 10, identity: 0.722

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------ttctctttctctatctctttctctatctctgttgga	Protospacer
      ** *** ***** ************ ****

177. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 10, identity: 0.722

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------atatctatatctatctctttctctatctctgttgga	Protospacer
       ******* *** ************ ****

178. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 10, identity: 0.722

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
ttctctttatctatctctatctctatctctgttgga	Protospacer
.* *************** ***** *****. .

179. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448432 (Streptococcus satellite phage Javan327, complete genome) position: , mismatch: 10, identity: 0.722

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------ttctctttctctatctctttctctatctctgttgga	Protospacer
      ** *** ***** ************ ****

180. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448844 (Streptococcus phage Javan116, complete genome) position: , mismatch: 10, identity: 0.722

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
aactctatatctatctctttctctatctctattgga	Protospacer
   *** ***************** ****** .

181. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 10, identity: 0.722

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------ttctctttctctttctctttctctttctctttcaga	Protospacer
      ** *** *****************  ****

182. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF417888 (Uncultured Caudovirales phage clone 9S_3, partial genome) position: , mismatch: 10, identity: 0.722

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
aactctttatctaactctatctctttctctgtgtaa	Protospacer
   ********** **** ***********.  *

183. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MN855637 (Bacteriophage sp. isolate 32, complete genome) position: , mismatch: 10, identity: 0.722

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
atctctttatctatctctgtctctatctctgttgga	Protospacer
 * *************** ***** *****. .

184. spacer 2.31|1400284|34|CP029458|CRISPRCasFinder,PILER-CR matches to MH319746 (Marine virus AG-345-E15 Ga0172270_16 genomic sequence) position: , mismatch: 10, identity: 0.706

gtgttaaaaacaattttatcttcatctattacaa	CRISPR spacer
gcttgtaaataaattttatcttcatctattctct	Protospacer
*. *  ***  ******************* .

185. spacer 2.44|1399169|41|CP029458|CRT matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 10, identity: 0.756

taaatctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------tatctatatctatatctatctctttctctatctctgttgga	Protospacer
      ***** ******* *** ************ ****

186. spacer 2.56|1399957|39|CP029458|CRT matches to NC_020157 (Anabaena cylindrica PCC 7122 plasmid pANACY.02, complete sequence) position: , mismatch: 10, identity: 0.744

taaataattaactattagacaaattaaattcgtaaacaa	CRISPR spacer
gcgttaaatagctattagacaaattaaattcgttatcgc	Protospacer
  . *** **.********************** * *.

187. spacer 3.16|1411659|35|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NC_010377 (Yersinia enterocolitica plasmid pYE854, complete sequence) position: , mismatch: 10, identity: 0.714

taccaaactttatttttctttttatctgcttttaa	CRISPR spacer
agaataaatttagttttctttttatctgcttcttc	Protospacer
 .   ** **** ******************.*

188. spacer 3.16|1411659|35|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011119 (Yersinia enterocolitica strain FORC_002 plasmid pFORC2, complete sequence) position: , mismatch: 10, identity: 0.714

taccaaactttatttttctttttatctgcttttaa	CRISPR spacer
agaataaatttagttttctttttatctgcttcttc	Protospacer
 .   ** **** ******************.*

189. spacer 3.37|1413035|35|CP029458|CRISPRCasFinder,CRT matches to NZ_CP054577 (Staphylococcus saprophyticus strain UTI-050 plasmid pUTI-050-2, complete sequence) position: , mismatch: 10, identity: 0.714

tcttgttcacacattatttttagtaaccctttatc	CRISPR spacer
ctaagaccacacattattattagtaactctttaca	Protospacer
..  * .*********** ********.*****.

190. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR217731 (Candidatus Erwinia haradaeae strain ErCipseudotsugae isolate 2889 plasmid pBioThi) position: , mismatch: 10, identity: 0.722

atgtaataaatataaataataaatataaataactat	CRISPR spacer
ttataataaatattaataataaataaaaagtgttta	Protospacer
 *.********** *********** ***  ..*

191. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MH937482 (Streptococcus phage CHPC982, partial genome) position: , mismatch: 11, identity: 0.694

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------atctctttctctatctctttctctatctctgttgga	Protospacer
       * *** ***** ************ ****

192. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580769 (Streptococcus phage L5A1, complete genome) position: , mismatch: 11, identity: 0.694

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------atctctttctctatctctttctctatctctgttgga	Protospacer
       * *** ***** ************ ****

193. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580768 (Streptococcus phage C0, complete genome) position: , mismatch: 11, identity: 0.694

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------atctctttctctatctctttctctatctctgttgga	Protospacer
       * *** ***** ************ ****

194. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MH937477 (Streptococcus phage CHPC950, complete genome) position: , mismatch: 11, identity: 0.694

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------atctctttctctatctctttctctatctctgttgga	Protospacer
       * *** ***** ************ ****

195. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MF580765 (Streptococcus phage A0, complete genome) position: , mismatch: 11, identity: 0.694

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------atctctttctctatctctttctctatctctgttgga	Protospacer
       * *** ***** ************ ****

196. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448617 (Streptococcus satellite phage Javan730, complete genome) position: , mismatch: 11, identity: 0.694

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
gactctttatctatctctatctctatctctgttgga	Protospacer
   *************** ***** *****. .

197. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448652 (Streptococcus satellite phage Javan763, complete genome) position: , mismatch: 11, identity: 0.694

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
gactctttatctatctctatctctatctctgttgga	Protospacer
   *************** ***** *****. .

198. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 11, identity: 0.694

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
gactctttatctatctctatctctatctctgttgga	Protospacer
   *************** ***** *****. .

199. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MH937511 (Streptococcus phage CHPC1247, complete genome) position: , mismatch: 11, identity: 0.694

ctatctttatctatctctttctctttctctaactct------	CRISPR spacer
------atctctttctctatctctttctctatctctgttgga	Protospacer
       * *** ***** ************ ****

200. spacer 2.14|1399174|36|CP029458|CRISPRCasFinder,PILER-CR matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 11, identity: 0.694

ctatctttatctatctctttctctttctctaactct	CRISPR spacer
gactctttatctatctctatctctatctctgttgga	Protospacer
   *************** ***** *****. .

201. spacer 2.28|1400090|35|CP029458|CRISPRCasFinder,PILER-CR matches to AP014316 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C31, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.686

aacttttattaagtaaattacatgttacactttac	CRISPR spacer
catcttaattaattaaattacatgttacaaaaaga	Protospacer
 *..** ***** ****************    .

202. spacer 2.28|1400090|35|CP029458|CRISPRCasFinder,PILER-CR matches to MH598806 (Pelagibacter phage HTVC119P, complete genome) position: , mismatch: 11, identity: 0.686

aacttttattaagtaaattacatgttacactttac	CRISPR spacer
catcttaattaattaaattacatgttacaaaaaga	Protospacer
 *..** ***** ****************    .

203. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448946 (Streptococcus phage Javan456, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

204. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448852 (Streptococcus phage Javan140, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

205. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448871 (Streptococcus phage Javan196, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

206. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448784 (Streptococcus phage Javan505, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

207. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448952 (Streptococcus phage Javan472, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

208. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448779 (Streptococcus phage Javan497, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

209. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448947 (Streptococcus phage Javan458, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

210. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448976 (Streptococcus phage Javan528, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

211. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

212. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448697 (Streptococcus phage Javan185, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

213. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448968 (Streptococcus phage Javan512, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

214. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448693 (Streptococcus phage Javan177, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

215. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448766 (Streptococcus phage Javan465, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

216. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448696 (Streptococcus phage Javan183, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

217. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NC_009819 (Streptococcus phage P9, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

218. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448797 (Streptococcus phage Javan531, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

219. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448689 (Streptococcus phage Javan163, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

220. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448868 (Streptococcus phage Javan188, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

221. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448866 (Streptococcus phage Javan184, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

222. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448974 (Streptococcus phage Javan524, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

223. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448699 (Streptococcus phage Javan189, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

224. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448789 (Streptococcus phage Javan513, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

225. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448678 (Streptococcus phage Javan135, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

226. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to NC_004589 (Streptococcus prophage 315.6, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

227. spacer 4.1|1563663|36|CP029458|PILER-CR,CRISPRCasFinder,CRT matches to MK448867 (Streptococcus phage Javan186, complete genome) position: , mismatch: 11, identity: 0.694

atgtaataaatataaataataaatataaataactat------	CRISPR spacer
------taaatataaatataaaaaataaatatatataaaata	Protospacer
      ************  *** *******  ***

228. spacer 2.44|1399169|41|CP029458|CRT matches to MK448428 (Streptococcus satellite phage Javan322, complete genome) position: , mismatch: 13, identity: 0.683

taaatctatctttatctatctctttctctttctctaactct	CRISPR spacer
actctctctctttatctatctctttctctgtcttacatgta	Protospacer
    *** ********************* ***.  *. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

472301 : 480394

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYF53617.1\|472301_473711_-	sensor histidine kinase	W8CYF6	Bacillus_phage	4.0e-21	26.7
AYF53618.1\|473715_474402_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.1e-35	36.7
AYF53619.1\|474661_475681_-	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	4.3e-65	42.2
AYF53620.1\|475907_477206_-	hypothetical protein	M1NSC5	Streptococcus_phage	3.4e-06	24.6
AYF53621.1\|477216_478170_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.6e-43	35.8
AYF53622.1\|479509_480394_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	9.3e-08	31.6

DBSCAN-SWA_2

494285 : 502207

Moraxella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYF53633.1\|494285_495542_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	1.2e-19	26.5
AYF53634.1\|495680_496571_-	ABC transporter permease	NA	NA	NA	NA
AYF53635.1\|496560_497247_-	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	3.4e-26	33.7
AYF53636.1\|497342_498206_-	YitT family protein	M1Q1P6	Streptococcus_phage	3.3e-34	33.0
AYF53637.1\|498402_499344_-	transketolase family protein	NA	NA	NA	NA
AYF53638.1\|499343_500168_-	transketolase	G9E5U1	Micromonas_pusilla_virus	4.7e-14	33.3
AYF53639.1\|500267_500615_-	type II toxin-antitoxin system PemK/MazF family toxin	A0A1S5RCS0	Lactobacillus_phage	8.9e-15	38.6
AYF53640.1\|500574_500901_-	hypothetical protein	NA	NA	NA	NA
AYF53641.1\|501043_502207_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	3.6e-36	31.8

DBSCAN-SWA_3

808522 : 824372

Streptococcus_phage(40.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYF53919.1\|808522_809767_+	aminoacetone oxidase family FAD-binding enzyme	A0A2H4PQX1	Staphylococcus_phage	9.7e-11	35.7
AYF53920.1\|809821_810565_-	acyl-ACP thioesterase	NA	NA	NA	NA
AYF53921.1\|810651_810843_-	DUF1858 domain-containing protein	NA	NA	NA	NA
AYF53922.1\|810911_812195_-	adenylosuccinate synthase	A0A285PX35	Cedratvirus	1.1e-62	33.8
AYF53923.1\|812279_813686_-	FAD-dependent oxidoreductase	A0A218MMS0	uncultured_virus	4.6e-25	25.6
AYF53924.1\|813946_814753_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	4.2e-39	36.6
AYF53925.1\|814905_816045_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-73	41.9
AYF53926.1\|816057_817311_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.9e-108	52.6
AYF53927.1\|817586_817799_-	DUF3006 domain-containing protein	Q0H256	Geobacillus_phage	1.4e-07	50.0
AYF53928.1\|818883_819720_-	DegV family protein	A0A1X9I5J4	Streptococcus_phage	3.1e-37	33.9
AYF53929.1\|819736_820594_-	DegV family protein	NA	NA	NA	NA
AYF53930.1\|821101_822436_-	replicative DNA helicase	O80281	Escherichia_phage	6.5e-106	47.4
AYF53931.1\|822464_824372_-\|protease	ATP-dependent protease, Lon family	A0A0R6PGP8	Moraxella_phage	5.4e-29	28.5

DBSCAN-SWA_4

1543845 : 1605388

Bacillus_phage(20.0%)

integrase,coat,protease,transposase

attL 1551031:1551061|attR 1567152:1567182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYF54522.1\|1543845_1544949_-\|coat	CotS family spore coat protein	NA	NA	NA	NA
AYF54523.1\|1545274_1547062_+	DNA primase	A0A1S5RH70	Helicobacter_phage	1.7e-40	28.6
AYF54524.1\|1547067_1548174_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	7.0e-37	37.4
AYF54525.1\|1548250_1549141_+	hypothetical protein	NA	NA	NA	NA
AYF54526.1\|1549151_1549841_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AYF54527.1\|1549831_1550647_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
1551031:1551061	attL	NA	NA	NA	NA
AYF54528.1\|1551146_1552292_-\|integrase	site-specific integrase	A0A0A8WIE1	Clostridium_phage	3.8e-62	37.8
AYF54529.1\|1552336_1552879_-	XRE family transcriptional regulator	A0A0A7RTK4	Clostridium_phage	1.0e-09	31.1
AYF54530.1\|1553155_1553338_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYF54531.1\|1553353_1553563_+	DNA-binding protein	A0A2I7SCU5	Paenibacillus_phage	1.8e-10	60.3
AYF54532.1\|1553590_1553800_+	DNA-binding protein	NA	NA	NA	NA
AYF55231.1\|1553831_1554650_+	chromosomal replication initiator DnaA	A6M985	Geobacillus_virus	6.7e-45	39.4
AYF54533.1\|1554918_1555137_-	DUF2922 domain-containing protein	NA	NA	NA	NA
AYF54534.1\|1555150_1555366_-	DUF1659 domain-containing protein	NA	NA	NA	NA
AYF54535.1\|1555438_1555666_-	hypothetical protein	NA	NA	NA	NA
AYF54536.1\|1556292_1556832_+	RNA polymerase subunit sigma	NA	NA	NA	NA
AYF54537.1\|1557152_1557347_+	hypothetical protein	NA	NA	NA	NA
AYF54538.1\|1557432_1558605_+	hypothetical protein	R4TMW4	Halovirus	2.1e-39	31.6
AYF54539.1\|1558616_1559603_+	DNA (cytosine-5-)-methyltransferase	Q6DMX0	Streptococcus_phage	2.6e-59	42.9
AYF54540.1\|1559615_1560425_-	hypothetical protein	NA	NA	NA	NA
AYF54541.1\|1560433_1561177_-	hypothetical protein	NA	NA	NA	NA
AYF54542.1\|1561808_1563302_+\|transposase	transposase	A0A142F1Q5	Bacillus_phage	1.6e-36	34.8
AYF54543.1\|1564473_1564740_+	hypothetical protein	NA	NA	NA	NA
AYF54544.1\|1565702_1565924_+	hypothetical protein	A0A172JI00	Bacillus_phage	1.1e-13	46.3
AYF54545.1\|1567721_1569716_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
1567152:1567182	attR	NA	NA	NA	NA
AYF54546.1\|1570156_1571689_+	hypothetical protein	NA	NA	NA	NA
AYF54547.1\|1571810_1575362_-\|protease	serine protease	A0A217EQY2	Bacillus_phage	9.5e-11	32.2
AYF54548.1\|1575589_1576816_-	sodium:proton antiporter	NA	NA	NA	NA
AYF54549.1\|1577079_1577679_+	hypothetical protein	NA	NA	NA	NA
AYF54550.1\|1577746_1578727_-	hypothetical protein	NA	NA	NA	NA
AYF54551.1\|1578851_1579796_-	hypothetical protein	NA	NA	NA	NA
AYF54552.1\|1579941_1580859_-	hypothetical protein	NA	NA	NA	NA
AYF54553.1\|1581082_1582411_+	DUF4300 domain-containing protein	NA	NA	NA	NA
AYF54554.1\|1582552_1583107_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYF54555.1\|1583256_1584201_+	hypothetical protein	NA	NA	NA	NA
AYF54556.1\|1584272_1584890_-	hypothetical protein	NA	NA	NA	NA
AYF54557.1\|1585143_1585935_-	histidinol-phosphatase	NA	NA	NA	NA
AYF54558.1\|1586124_1586598_+	DUF1097 domain-containing protein	NA	NA	NA	NA
AYF54559.1\|1586954_1587566_+	DUF3793 domain-containing protein	NA	NA	NA	NA
AYF54560.1\|1587732_1587957_+	ferrous iron transport protein A	NA	NA	NA	NA
AYF54561.1\|1587971_1588214_+	iron transporter	NA	NA	NA	NA
AYF54562.1\|1588276_1590292_+	ferrous iron transport protein B	NA	NA	NA	NA
AYF54563.1\|1590694_1591288_+	ECF transporter S component	NA	NA	NA	NA
AYF55232.1\|1591652_1592156_+	folate family ECF transporter S component	NA	NA	NA	NA
AYF54564.1\|1592603_1593995_+	sodium:alanine symporter family protein	NA	NA	NA	NA
AYF54565.1\|1594191_1594887_+	YfcE family phosphodiesterase	R4T9B5	Halovirus	9.8e-13	27.2
AYF54566.1\|1594949_1595837_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AYF54567.1\|1596321_1596651_+	hypothetical protein	NA	NA	NA	NA
AYF54568.1\|1596669_1598022_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	M1NMR0	Moumouvirus	4.4e-33	29.5
AYF54569.1\|1598250_1598706_+\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	4.0e-15	35.7
AYF54570.1\|1600750_1600996_+	hypothetical protein	NA	NA	NA	NA
AYF54571.1\|1601363_1602167_+	hypothetical protein	NA	NA	NA	NA
AYF54572.1\|1602156_1602615_+	hypothetical protein	NA	NA	NA	NA
AYF54573.1\|1603975_1605388_-\|transposase	transposase	G3MB42	Bacillus_virus	1.0e-88	41.9

DBSCAN-SWA_5

2129206 : 2138944

uncultured_Mediterranean_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYF55071.1\|2129206_2131399_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	8.2e-13	37.6
AYF55072.1\|2131499_2132018_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.4e-26	41.7
AYF55073.1\|2132098_2133010_-	delta(24)-sterol C-methyltransferase	NA	NA	NA	NA
AYF55074.1\|2133173_2134043_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.5e-39	39.5
AYF55075.1\|2134043_2135315_-	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	6.2e-05	27.9
AYF55076.1\|2135406_2136777_-	thioether cross-link-forming SCIFF peptide maturase	NA	NA	NA	NA
AYF55077.1\|2136847_2136985_-	six-cysteine peptide SCIFF	NA	NA	NA	NA
AYF55078.1\|2137059_2137428_-	TIGR04086 family membrane protein	NA	NA	NA	NA
AYF55079.1\|2137486_2137765_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.1e-07	37.5
AYF55080.1\|2137813_2138944_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.0e-91	46.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029460

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CRISPR-Cas detection and classification

Crispr_ID: CP029460_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029460_1

36952-37198

Unclear

Consensus_repeat	Method
TAACTAAAATAGTTTTATTAATA	CRISPRCasFinder

4 spacers

cas6

The CRISPR arrays of CP029460_1

>merge|CP029460|1|36952-37198|CRISPRCasFinder
TAACAGAGATAGTTTAATCTCTATTAAGGCACATTTTTAACTAAAATAGTTTTATTAATACTAATAATTTATGTATATTCCTTTTTATTCTCTTATATTTATAACTAATATAGTTTTATTAATAGTTTCTGTTACTTTAAATTACAAGAGAACTTATAACGAATATAAACTTATTAATACATTATATTACAGTAATATTTTCTAAAATGCAACTCTTCATTTCTAAAATAACATAGTTTTTTTTAAA

>CP029460|1|1|36952-37198|CRISPRCasFinder
TAACAGAGATAGTTTAATCTCTA	TTAAGGCACATTTT
TAACTAAAATAGTTTTATTAATA	CTAATAATTTATGTATATTCCTTTTTATTCTCTTATATTTA
TAACTAATATAGTTTTATTAATA	GTTTCTGTTACTTTAAATTACAAGAGAACTTA
TAACGAATATAAACTTATTAATA	CATTATATTACAGTAATATTTTCTAAAATGCAACTCTTCATTTCT
AAAATAACATAGTTTTTTTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029460.1\|AYF55411.1\|28290_28560_+\|hypothetical-protein	unknown	unknown	unknown
CP029460.1\|AYF55423.1\|43352_44309_-\|thermolabile-hemolysin	unknown	unknown	gnl\|CDD\|238882
CP029460.1\|AYF55410.1\|26857_27856_+\|phospholipase	unknown	unknown	gnl\|CDD\|176528
CP029460.1\|AYF55426.1\|48130_49075_+\|hypothetical-protein	unknown	unknown	unknown
CP029460.1\|AYF55427.1\|49186_50119_+\|hypothetical-protein	unknown	unknown	unknown
CP029460.1\|AYF55428.1\|50241_51189_+\|hypothetical-protein	unknown	unknown	unknown
CP029460.1\|AYF55418.1\|35146_36250_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
CP029460.1\|AYF55425.1\|47047_47992_+\|hypothetical-protein	unknown	unknown	unknown
CP029460.1\|AYF55422.1\|41253_43320_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
CP029460.1\|AYF55412.1\|28625_29930_-\|aerolysin-family-beta-barrel-pore-forming-toxin	unknown	unknown	gnl\|CDD\|198067
CP029460.1\|AYF55417.1\|33698_34949_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271147
CP029460.1\|AYF55414.1\|31150_32062_-\|hypothetical-protein	unknown	unknown	unknown
CP029460.1\|AYF55409.1\|24875_26462_+\|clostripain	unknown	unknown	gnl\|CDD\|131853
CP029460.1\|AYF55420.1\|39461_40217_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09759_cas6_CAS-I-A	gnl\|CDD\|224499
CP029460.1\|AYF55421.1\|40195_40840_-\|CRISPR-associated-protein-Cas5	unknown	unknown	gnl\|CDD\|273860
CP029460.1\|AYF55424.1\|44531_46199_-\|hypothetical-protein	unknown	unknown	unknown
CP029460.1\|AYF55446.1\|38242_38506_-\|hypothetical-protein	unknown	unknown	unknown
CP029460.1\|AYF55413.1\|30623_31049_+\|hypothetical-protein	unknown	unknown	unknown
CP029460.1\|AYF55415.1\|32276_32690_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271152
CP029460.1\|AYF55416.1\|32717_33503_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271152

Protein	Function_ID	Function_description	E-value
CP029460.1\|AYF55422.1\|41253_43320_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.0387e-39
CP029460.1\|AYF55412.1\|28625_29930_-\|aerolysin-family-beta-barrel-pore-forming-toxin	gnl\|CDD\|198067	smart00999, Aerolysin, Aerolysin toxin. This family represents the pore forming lobe of aerolysin.	1.83381e-66
CP029460.1\|AYF55410.1\|26857_27856_+\|phospholipase	gnl\|CDD\|176528	cd08586, PI-PLCc_BcPLC_like, Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which contains a single TIM-barrel type catalytic domain, X domain. They are similar to bacterial PI-PLCs, and distinct from typical eukaryotic PI-PLCs, which have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains, and strictly require Ca2+ for their catalytic activities. The prototype of this family is Bacillus cereus PI-PLC, which has a moderate thermal stability and is active as a monomer.	5.40828e-83
CP029460.1\|AYF55417.1\|33698_34949_-\|hypothetical-protein	gnl\|CDD\|271147	cd04081, CBM35_galactosidase-like, Carbohydrate Binding Module family 35 (CBM35); appended mainly to enzymes that bind alpha-D-galactose (CBM35-Gal), including glycoside hydrolase (GH) families GH27 and GH43. This family includes carbohydrate binding module family 35 (CBM35); these are non-catalytic carbohydrate binding domains that are appended mainly to enzymes that bind alpha-D-galactose (CBM35-Gal), including glycoside hydrolase (GH) families GH27 and GH43. Examples of proteins which contain CBM35s belonging to this family includes the CBM35 of an exo-beta-1,3-galactanase from Phanerochaete chrysosporium 9 (Pc1,3Gal43A) which is appended to a GH43 domain, and the CBM35 domain of two bifunctional proteins with beta-L-arabinopyranosidase/alpha-D-galactopyranosidase activities from Fusarium oxysporum 12S, Foap1 and Foap2 (Fo/AP1 and Fo/AP2), that are appended to GH27 domains. CBM35s are unique in that they display conserved specificity through extensive sequence similarity but divergent function through their appended catalytic modules. They are known to bind alpha-D-galactose (Gal), mannan (Man), xylan, glucuronic acid (GlcA), a beta-polymer of mannose, and possibly glucans, forming four subfamilies based on general ligand specificities (galacto, urono, manno, and gluco configurations). Some CBM35s bind their ligands in a calcium-dependent manner. In contrast to most CBMs that are generally rigid proteins, CBM35 undergoes significant conformational change upon ligand binding. GH43 includes beta-xylosidases and beta-xylanases, using aryl-glycosides as substrates, while family GH27 includes alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases.	1.25533e-11
CP029460.1\|AYF55418.1\|35146_36250_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	7.46429e-08
CP029460.1\|AYF55409.1\|24875_26462_+\|clostripain	gnl\|CDD\|131853	TIGR02806, Contains:_Clostripain_light_chain, clostripain. Clostripain is a cysteine protease characterized from Clostridium histolyticum, and also known from Clostridium perfringens. It is a heterodimer processed from a single precursor polypeptide, specific for Arg-\|-Xaa peptide bonds. The older term alpha-clostripain refers to the most active, most reduced form, rather than to the product of one of several different genes. Clostripain belongs to the peptidase family C11, or clostripain family (see pfam03415). [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Pathogenesis].	0
CP029460.1\|AYF55420.1\|39461_40217_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	8.72908e-20
CP029460.1\|AYF55421.1\|40195_40840_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.11103e-08
CP029460.1\|AYF55423.1\|43352_44309_-\|thermolabile-hemolysin	gnl\|CDD\|238882	cd01846, fatty_acyltransferase_like, Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.	1.86972e-69
CP029460.1\|AYF55415.1\|32276_32690_-\|hypothetical-protein	gnl\|CDD\|271152	cd04086, CBM35_mannanase-like, Carbohydrate Binding Module 35 (CBM35); appended to several carbohydrate binding enzymes, including several glycoside hydrolase (GH) family 26 mannanase domains. This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes, including periplasmic component of ABC-type sugar transport system involved in carbohydrate transport and metabolism, and several glycoside hydrolase (GH) domains, including GH26. These CBM6s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. Examples of proteins having CMB35s belonging to this family are mannanase A from Clostridium thermocellum (GH26), Man26B from Paenibacillus sp. BME-14 (GH26), and the multifunctional Cel44C-Man26A from Paenibacillus polymyxa GS01 (which has two GH domains, GH44 and GH26). GH26 mainly includes mannan endo-1,4-beta-mannosidase which hydrolyzes 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans, and galactoglucomannans, but displays little activity towards other plant cell wall polysaccharides. A few proteins belonging to this family have additional CBM3 domains; these CBM3s are not found in the CBM6-CBM35-CBM36_like superfamily.	1.14597e-10
CP029460.1\|AYF55416.1\|32717_33503_-\|hypothetical-protein	gnl\|CDD\|271152	cd04086, CBM35_mannanase-like, Carbohydrate Binding Module 35 (CBM35); appended to several carbohydrate binding enzymes, including several glycoside hydrolase (GH) family 26 mannanase domains. This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes, including periplasmic component of ABC-type sugar transport system involved in carbohydrate transport and metabolism, and several glycoside hydrolase (GH) domains, including GH26. These CBM6s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. Examples of proteins having CMB35s belonging to this family are mannanase A from Clostridium thermocellum (GH26), Man26B from Paenibacillus sp. BME-14 (GH26), and the multifunctional Cel44C-Man26A from Paenibacillus polymyxa GS01 (which has two GH domains, GH44 and GH26). GH26 mainly includes mannan endo-1,4-beta-mannosidase which hydrolyzes 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans, and galactoglucomannans, but displays little activity towards other plant cell wall polysaccharides. A few proteins belonging to this family have additional CBM3 domains; these CBM3s are not found in the CBM6-CBM35-CBM36_like superfamily.	1.512e-05

>CP029460.1|AYF55418.1|35146_36250_-|carboxypeptidase-regulatory-like-domain-containing-protein
MVQINKDKYDLAQSTSGVIVSPGEEIRMDLTLQPNTNNIIGANISGTVTNESSDPIEGAYIKLMTENYEPIVHTITNTSGQYFLDNIAQGNYYLFAIAQGMNLNQGNLLVLKNYLHYTVNFMLTSSTSSRLAIVAGRITDSITNNPINRVIVSLFSKTTGSSDTLISLVYTNEYGQYVFSDVPIGNYAITMTSLEYLSLTIPVSITENGEIYPIKSVLQIRNTLSLNTIVVRGYDYRKIIIIGFNVTNTTLTLQRNYPGTYFHGARNAFFRIQVISVTGVQKLSVEVIGKDTSGSSKLNPINGFKFEYGDKIKLWCSDPQGTKEGALIITGKVINGNEDYSNGISTSNMNNTEFQITPSGLKAIYLN
>CP029460.1|AYF55417.1|33698_34949_-|hypothetical-protein
MDIQSDKYILGQSISKIISNQDDEIRLDLSLQPNTRQLLLGPEYDSFTIASLGYIPPIRTNATKGRLNSVTIVLNGQFVQGLGTSYSSEVNLIIYTMVAGQYDLNIKYLSGDKNTTLLINIAGVPTGVTYNFPKTTNWEVSSARTLTVSLDLPKGRSLIKFYNNYRIASPWIGDLEFSFHQRPVVVEIQSRTCNIVKPAFQLDNGYVGAIGDKGGYVVCTINVSKAGIYTLGIQYLSGDQTHYINRILKLDVNGVSTGKTYTFPNTGNWEVSSARVFNVVISLNKGENTVKFYNSPNSPGPWIGLLTFTEVFFYKTIEAENTTLTGTAKINDELVSGIGYGLGSITFDTNSLPCKANYDLIIRYISTIPGRTARLLVNGVQVGGEYVFETTDDWQIFKYKTITIPLNSDGNIIKIS
>CP029460.1|AYF55416.1|32717_33503_-|hypothetical-protein
MDIQGSKFILGQSISKTIENTQDEITMDLSLQPSTNEIIYGPKYDSFTVTSLGYVPEISISATTATLYGDLSITSNRKFVQGFGLVTSKAILNINVLTAGIYNLTIQYLSQYSDATLIVDINGDENTYNFSQTVDLQESNALTITVEVDLVVGENTISLYNNISSSPQIGNLAFTYTEIPSSITLQPSSWNIVSPASLLSNGYVGGIGNNGGYIVIPVTVTNAGVYNLVIRYLSGDSNTIVKIDVNGTDTGTSYTFPKTTD
>CP029460.1|AYF55415.1|32276_32690_-|hypothetical-protein
MNINLNKGINSVKFYNSPNAPGPHIGEVTFTQQFFNETIDAEDTTLMGTAEVVSGGLVSGIAYGLGKLNFNINAPGTGDYNLSIKYSATNAEKTARIFLNEVYWGEYTFDTTDGSNPAKYKQIGVYLNVGNNTIEIS
>CP029460.1|AYF55414.1|31150_32062_-|hypothetical-protein
MQCNYSQKISFICNNEADYFLDKLNVVGVGRGYKIKNGFRTHQECIIIFVCKKLPKHCLYKNDLIPKLYKGIPTDVVESGNFRFQSLTGRVRPAPGGYSIGSTVIRNTASIGCLVHDSKGEYILTCNHAIINEILEEGANVMQPSLEDGGRAPEDIIGKVYKFIKLGKSNVFLKTVNYVDVSLISISNRRFVTPIIYYVGIPTGHGEAFLNQNVIKVGRTSEETIGQVNALDVTIKIPFGEKNFKFAEQITTTKMTENGDSGSVLLNQNKEVLGLTVGGTESISVYSKIDTILRFLNVNIVTR
>CP029460.1|AYF55413.1|30623_31049_+|hypothetical-protein
MFTNANLCYKPMPYMNNYVNLGGYQIKVSNESGLPIVLKLKYSLAGMTNEVTSPNIEYGSQYSTELPQKSSRITITLYDNSNPEDPTVIYTIPLFYPRNACYHVSGTSSSSSVKEVPCSSLDSSQNIYNNCCCCCYMCNCK
>CP029460.1|AYF55412.1|28625_29930_-|aerolysin-family-beta-barrel-pore-forming-toxin
MLKKSIIKKTLFSSFIAIQCLTVVPHVQAFAYSSNYSSNYKMSNIKPEIILFGYQDDDDLKAKIIQDSTFIRNWATVAHSMGFAWCGGTASKSVGDGFEFRMAYENSKPVYYLTSRYNENDPYAKGWRANERLTMKITNVRFIIDDSSIHLGTPKVTNLEPLTSKSMEVINPNNTEGKGSLNFNYISSQSKSKTDNFKFSEKIGVKTTFSVDIALINNKIETSFDFSSEQGWSTSTNNTETKQDSVSYTTTISPNSKKTVYLDVLRKKCDVPYDATIYMEYDIEFTGFLKYSGNARKDHPKDRPTVSFKFGGKNNMSAVEHLADLYKHKDINGYSNWDWKWIDTNYGKCFSNAYYNLNNLYYGGVISGVFNNVDGSKAIVKEGTEVPLNKEKSERSADSNVKVENVKTQEVPGFKVKDITISTSDGTTTINSKN
>CP029460.1|AYF55411.1|28290_28560_+|hypothetical-protein
MNKIDKSLSLKAQAMQAHSLRNKYRTQARKLMKDRKLAQYLDINNYNLSFEYYENKYLKQGYKHDSLYEKILDSSTRSNKFVNKSLGIM
>CP029460.1|AYF55410.1|26857_27856_+|phospholipase
MMNNIKLGYSHDDDICQDQSQWMANLNDNKLLSSISIPGTHDTMSIGWGGDISQNQSKTLRNQLISGIRFLDIRLAAYPNYSDLLYCYHGFIYLHSTFREVLDIVTSFLKEHPSETILIRIKQEYTNETNKVFASLLKKILEDSKYLDYVFKGKGIYNPKLKELRGKFIILQNFAGIIEYLLYTQNFNIQDDYYISTNWGLYDKWLKIKLQLFTANNFYLMGTNTKFINYLSGSGGVFPYFVASGHVNPGTYAPRLSTGLTEPAFHDYYPDFPRVNWCGVFATIAFEGTNNLAITYINKIKPLYVGIVVSDFPGQGLINTVISVNFNKKTYK
>CP029460.1|AYF55409.1|24875_26462_+|clostripain
MLKKIPQILTVAVLGISFMGSNPVYAVSKNTKSNKSYVNQSVKKQDSNGQKVTILYYCDADNNLEGALMNDIAEMKRGYVNNPNLNLIALVDRTPNESNDSTALGENFEDTRLYKIEHNKAIRLDGGKEFPEIRLNGSYEANMGDPQTLKKFIEFGKSHYKADKYVLIMSNHGGGAKNKNNNNERLNKAICWDDSSSDGDQPDCLYMGEISDNLTNKHSVDVLAFDACLMGTAEVAYQFRPDNGGFSAKTMIASSPVVWGPGFKYDNIFARIREGNIISNEDDLTLGGKEKSFDPKTITNEQIGALFVEEQRDSVKEARRNDQQLSCYDLSKIKNLKQSFDKLAVNLSKEDKKFDIENLRGTRTRVNLIHYFNERDQFEWIDYPYFDIYDLCQQITLSYNFNRETKALALNVMRDINDVILYSFGGSKFNGTNGFKEGKNGLSVFLPDGNRNYISRYSIRPIPHWQIQSWYNSIDTVASGLNNPYGKLSWCKDGQDPRKNSVGNWFELLDSWFDKSNGIDGGVNHYQW
>CP029460.1|AYF55446.1|38242_38506_-|hypothetical-protein
MKKEKLQLIKKVCEKVYKINDIDEIKELKEVDSFNKFEELLIKWNDIYVNNKNKNLFDLDQYDMLVDFKEFKSTKNRMIIAFMNLNI
>CP029460.1|AYF55420.1|39461_40217_-|CRISPR-associated-endoribonuclease-Cas6
MLSRKSIILKSESNGVLDYNWNYPLSINLFNKMLLYDAKFAEFLHNEGFRSNDEKKKKFKLINFMMLFNNQKMDSKGININKDDEVVLIISGYKDPMNAILQGLCINHKINLNNIIFKVIAIKEDRKVKFNKINIYKAITPIVESIWENGSVKFLNPYQFQYYNAIKKNLKRKYEIIYKKTYSGELKLMIENMFKVKKKSIKIKNGYIQGYSNFEILIQCDKDMQKVAYYCGLGQNSSMGLGLLNYITGGE
>CP029460.1|AYF55421.1|40195_40840_-|CRISPR-associated-protein-Cas5
MEFSKVILTSTMAHFKYGINGKNQNTFTVPPISTIVGILKNVYGKEIKDFIFGYICRYEDIFKDVITIYKEVNLNITLTKGDRFQHDIGFIEYLVNPTITIYTNLDVPIQINDILNLGKTNCLAKCKFEKENITFKECMGYNQWTPKNIGNGKIKRINKETMYNKNKGYYDYYTELFRLNEEFIAKYMLEDTEEGIQLWQYKGVGDIECYQGKV
>CP029460.1|AYF55422.1|41253_43320_-|methyl-accepting-chemotaxis-protein
MIKKFKSIQSQFLVINILIIILALGIVGITISYQVNTQVKKDYISNSQEQMKLAERSIKIFYDQIDKNINMLSCNPLIIQVNKDNITSYINTTKATQMTPSKNGTIEREIYNIFEQYAKSHPGTMYVYLATKYGGFVNWPECTISKQYDPTSKEWYQKGLKGNGTIIRTAPYKDDTGSMIISNVRSLTDSNGNVLGTIGIDVEQSVISNMLNKMKIGRTGFSMLIHNKGMVMADGNNSSNNFKNIKEVNIPGIEKALSKDLNSFHVTINKKKYIGSTYKLNNTDWILASFMSENELLSSARRISAIIVVISIFMLILTVILINIITKQITSPIIKSSKHLEILASGNFSQELDCELLSRKDEIGIITNGINNMKNSLINLVVSIKNESSAIEQKVNNVVENVQILDSDLQEISATTEELAASMEETSAVSEEMSATSQQMEVSINSIAQRSEKGVAAANEINKRATVIKENTNIAQKKATNILLHTKDELQKAIEDSKVVDEINILSESIMQITEKTNLLALNAAIEAARAGEYGKGFSVVAEEIRKLAEQSKDTVLKIQSVTTNVISSVNNLSTNATNLLDFVSKDVINDYKVMLDVSEKYNEDAKFIDELVSEISATSEELLSSVQEVLGAINNVAVAANDGASGTTNIADRVSKVNYKSKDVMQEVLKSKESTDKLQQEVDKFKM
>CP029460.1|AYF55423.1|43352_44309_-|thermolabile-hemolysin
MKKKFVFMFTIILTVIIVFTGTKYLKSRKKISEKITQVVAFGDSYSDNGQAKKISAQIMDNPNRPKEAYLKPSDKLYWNGRYSNGNTAVEVLAKKLDVPLTNYATGGATTGEKNYCQWMDYLGDTGLLGQVEKFKKSLKTDNADSHTLYFIFASANDYFKFMDYSMPGKIENIADKAVDNINTAVKKLAGLGAKKFFVVNSSDLSLVPYEITNNRTKSAEAFVNGVNKKLPESLKELQKNLNIKIMMFDLPKISDKIMKNPSKYGLVELKKECESTYPKIKPACNNQDQYYFWDEWHYSRAVHKILGEEMYSKVKMFK
>CP029460.1|AYF55424.1|44531_46199_-|hypothetical-protein
MNEKNKALQKQSFIMDINILEAPFFLFNQSTKAVKVKDIKNNPNITDEVRHILNVHGIDEGESKYFNWKDSKGMTREMLALTTGQLPRKFTMDVWYGIVGLYIKKTSPINFNEQLNMFDIQSDRLYFTLYELAKFMKLTTGGANIAKIQDAIRQLKNTQYYSFSNGSIYDKKNEEYIKTKERGLSLILEYEFNSEKKRSSKQDMKYKCWVQLNSLVIDNIKHEFIKYLNSETYFTLPSGLTRGLYTYLEGNKYSINGMLTYIKRNFEVLANKIPIEYKFNSDLKKKLKKPLENLMKYGIISDYFYGDKDIINKKEHCIYFIFKGKKEDIINSLRKRYQEKQLQLAVENIKKEEFEMKIPKNLDRTLEEIGFNGKVIKQLYSEYDKWDIIKYIIWLQQQKSKNTGSVKNSAGLLRFALMGNVNLDISHKDIVEFVENEKKKFENSKLSHEEILKNAYDNYVSDEIEKLKKEEEGTYNIIYENTLINIEAQVDTQIAQLKLLEKNEGVEMPSLKLWEEFKEKKYESELFKKNFINSIKVFRGIMTFEEFQVEFDKNR
>CP029460.1|AYF55425.1|47047_47992_+|hypothetical-protein
MILSKNNTITKENKLQQNICNICNGDYKYFLNKRNVVGLGLGYKVKNGFYTNQLCLQVFVSRKYSENEINIKDKIPSMYKGILTDVKETGYFKACSLNKKIRPVLGGYSISVYKGNEIYGTAGCVVTNGVNKFVLSTNHVLTKINKLYMHFPIIQPACVYGGTYSDTIATLHRYIPLHLFNGGEPPINLTDCALGLLTNANIMNPEIAFIGKVTCVKSPKLGIPVRKVGAMSELTEGIITSINANHTVTYTNGEVAFFKDQILTSNMAVKGDSGSILIDKNNCAIGLLFATTNNFTAYNRLTTVLDQLDVCLTN
>CP029460.1|AYF55426.1|48130_49075_+|hypothetical-protein
MILNKNNDYTEENKLQRNICNICNGDYKYFLNKRNVVGVGLGYKVKNGFYTNQLCVQVFVGKKRTLNELNTNDIIPSIYKGIPTDIKETGYFKACSFNQRKRPVLGGYSVSANGSDHIYGTAGCLVTNGVNKFVLGTNHVLVKINELPINFKILQPAYIYGGRSSFDTIATLHKYIPLRFIKGQEQPINLTDCALGLLTKSNIMDSNIALIGKVTCVKNPKLGTRVKKVGATTELTEGTITSINANHTVFYSNGKVAFFKDQILTSNMAMEGDSGSILVDKNNCALGVLFAAANNTAYNRLTTVLDQLDVYLQD
>CP029460.1|AYF55427.1|49186_50119_+|hypothetical-protein
MVLNKNNYVIEENIAHICDCDYKYFLNKKNVVGIGLGYKVKNGFYTNQLCVQVFVSKKYSENDININDKIPSMYKGIPTDVKETGYFRACSFRGKKRPVLGGYSISGNMNSKNSGTAGCLVKSGSAQFLLGTNHVIVNLNMEPIAAPIVQPSLEYGGYTPTDTVATVHKFIPLRFIQGRDRPINLTDCALGLLTKPNIMSNKIALIGKLKCVKSPKLGAHVKKVGETTELTEGTITSVNASFIAAYENDELALFKDQVLTSAMGEAGDSGSILVDDNNCAVGLLFSTSDNDTAYNRLSTVLDQLDVCLPD
>CP029460.1|AYF55428.1|50241_51189_+|hypothetical-protein
MILNKNNYFIEENKLQENIASICNCDYKYFLNKKNVVGIGLGYKVKNGFYTNQLCVQVFVSRKYSENEININDRIPSMYKGILTDVKETGYFKACSLNKKIRPVLGGYSISVSTSEVINGTVGCLVVSGSYKFLLSTNHVLTRINVLPMKYPIIQPASVYGGYAPTDTVATLDKFIPIRFIKGEQQPTNLTDCALGLLTKPNIMSNKIALIGKVSCVKNPKLFGNVKKVGEATELTDGIITSINATFTVSYANGELALFKDQIITTLMGMEGDSGAILVDDKDCAVGMLFSTSHNNTAFNRLSTVLDQLDVHLPD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029460_1	1.2\|37012\|41\|CP029460\|CRISPRCasFinder	37012-37052	41	NZ_CP029460	Clostridium novyi strain 150557 plasmid pCN2, complete sequence	37012-37052	0	1.0
CP029460_1	1.3\|37076\|32\|CP029460\|CRISPRCasFinder	37076-37107	32	NZ_CP029460	Clostridium novyi strain 150557 plasmid pCN2, complete sequence	37076-37107	0	1.0
CP029460_1	1.4\|37131\|45\|CP029460\|CRISPRCasFinder	37131-37175	45	NZ_CP029460	Clostridium novyi strain 150557 plasmid pCN2, complete sequence	37131-37175	0	1.0
CP029460_1	1.3\|37076\|32\|CP029460\|CRISPRCasFinder	37076-37107	32	NZ_CP053316	Bacillus circulans strain GN03 plasmid unnamed, complete sequence	5694-5725	8	0.75

1. spacer 1.2|37012|41|CP029460|CRISPRCasFinder matches to NZ_CP029460 (Clostridium novyi strain 150557 plasmid pCN2, complete sequence) position: , mismatch: 0, identity: 1.0

ctaataatttatgtatattcctttttattctcttatattta	CRISPR spacer
ctaataatttatgtatattcctttttattctcttatattta	Protospacer
*****************************************

2. spacer 1.3|37076|32|CP029460|CRISPRCasFinder matches to NZ_CP029460 (Clostridium novyi strain 150557 plasmid pCN2, complete sequence) position: , mismatch: 0, identity: 1.0

gtttctgttactttaaattacaagagaactta	CRISPR spacer
gtttctgttactttaaattacaagagaactta	Protospacer
********************************

3. spacer 1.4|37131|45|CP029460|CRISPRCasFinder matches to NZ_CP029460 (Clostridium novyi strain 150557 plasmid pCN2, complete sequence) position: , mismatch: 0, identity: 1.0

cattatattacagtaatattttctaaaatgcaactcttcatttct	CRISPR spacer
cattatattacagtaatattttctaaaatgcaactcttcatttct	Protospacer
*********************************************

4. spacer 1.3|37076|32|CP029460|CRISPRCasFinder matches to NZ_CP053316 (Bacillus circulans strain GN03 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gtttctgttactttaaattacaagagaactta	CRISPR spacer
tactcttaaacttttaattgcaagagaactta	Protospacer
  .***   ***** ****.************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029458

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029460

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection