CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP022214	Burkholderia thailandensis strain FDAARGOS_241 chromosome 1, complete sequence	0 crisprs	PrimPol,DEDDh,csa3,DinG	0	0	9	0
CP022215	Burkholderia thailandensis strain FDAARGOS_241 chromosome 2, complete sequence	0 crisprs	DinG,csa3,cas3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

378937 : 389819

Agrobacterium_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWY57392.1\|378937_381238_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	41.9
AWY57393.1\|381234_381549_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A218MMY6	uncultured_virus	2.6e-13	44.6
AWY57394.1\|382079_382283_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
AWY57395.1\|382394_383990_-	copper oxidase	NA	NA	NA	NA
AWY57396.1\|384002_384179_+	GNAT family acetyltransferase	NA	NA	NA	NA
AWY57397.1\|384151_385411_-	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	6.8e-12	63.0
AWY57398.1\|385675_386254_+	pseudouridine synthase	NA	NA	NA	NA
AWY57399.1\|386514_386730_+	hypothetical protein	NA	NA	NA	NA
AWY57400.1\|386925_387441_+	hypothetical protein	A0A1B1IUW8	uncultured_Mediterranean_phage	1.5e-13	41.2
AWY57401.1\|387704_389819_+	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-56	26.8

DBSCAN-SWA_2

521258 : 550779

Burkholderia_virus(30.0%)

transposase,integrase

attL 517563:517581|attR 552760:552778

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
517563:517581	attL	NA	NA	NA	NA
AWY57511.1\|521258_522617_+\|integrase	integrase	NA	NA	NA	NA
AWY57512.1\|522824_523217_+	hypothetical protein	NA	NA	NA	NA
AWY57513.1\|523213_524080_+	hypothetical protein	NA	NA	NA	NA
AWY57514.1\|524266_524806_+	hypothetical protein	A4JX23	Burkholderia_virus	1.3e-49	60.1
AWY57515.1\|524802_525537_+	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	6.3e-111	79.5
AWY57516.1\|525564_526647_+	hypothetical protein	Q8W6S0	Burkholderia_virus	1.4e-159	76.3
AWY60222.1\|526813_527272_-	transcriptional regulator	NA	NA	NA	NA
AWY57517.1\|528595_529276_+	hypothetical protein	NA	NA	NA	NA
AWY57518.1\|529311_529692_+	hypothetical protein	NA	NA	NA	NA
AWY57519.1\|529987_530812_-	hypothetical protein	NA	NA	NA	NA
AWY57520.1\|530951_531275_-	hypothetical protein	NA	NA	NA	NA
AWY60223.1\|531332_532964_-	hypothetical protein	NA	NA	NA	NA
AWY57521.1\|533600_534155_+	hypothetical protein	NA	NA	NA	NA
AWY57522.1\|534264_535338_-\|integrase	integrase	A0A2D1GMX8	Marinobacter_phage	2.5e-07	23.2
AWY57523.1\|535843_536365_+	hypothetical protein	NA	NA	NA	NA
AWY57524.1\|536392_539428_+	hypothetical protein	NA	NA	NA	NA
AWY57525.1\|539566_540130_+	hypothetical protein	NA	NA	NA	NA
AWY57526.1\|540179_540587_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
AWY57527.1\|540583_540931_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
AWY57528.1\|540960_542532_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
AWY60224.1\|544047_544299_-	hypothetical protein	NA	NA	NA	NA
AWY57529.1\|544513_545002_-	hypothetical protein	A0A0N9SGM1	Paenibacillus_phage	3.3e-23	39.5
AWY57530.1\|545095_545797_-	restriction endonuclease	NA	NA	NA	NA
AWY57531.1\|545793_547017_-	DNA (cytosine-5-)-methyltransferase	A7XXH6	Thermus_virus	1.2e-26	28.6
AWY57532.1\|547003_547435_-	very short patch repair endonuclease	I6NSG0	Burkholderia_phage	3.9e-36	51.6
AWY57533.1\|548715_550779_+\|integrase	integrase	NA	NA	NA	NA
552760:552778	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1314094 : 1321131

Pseudomonas_phage(33.33%)

integrase

attL 1315266:1315316|attR 1325322:1325372

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWY58154.1\|1314094_1315123_-\|integrase	integrase	W6MYA3	Pseudomonas_phage	1.2e-46	41.3
1315266:1315316	attL	NA	NA	NA	NA
AWY58155.1\|1315458_1315764_-	hypothetical protein	NA	NA	NA	NA
AWY60292.1\|1315963_1316281_-	transcriptional regulator	A0A088CD40	Shigella_phage	2.1e-15	59.2
AWY58156.1\|1316288_1316648_-	hypothetical protein	A0A088CBP5	Shigella_phage	1.1e-18	51.9
AWY58157.1\|1316662_1317517_-\|integrase	integrase	Q9T1P3	Pseudomonas_phage	8.3e-62	46.2
AWY58158.1\|1317597_1318374_-	hypothetical protein	A0A1W5LU59	Ralstonia_phage	4.3e-33	40.9
AWY58159.1\|1318840_1320229_-	type II secretory pathway protein	NA	NA	NA	NA
AWY58160.1\|1320225_1321131_-	hypothetical protein	Q6UAZ2	Ralstonia_phage	4.9e-28	36.1
1325322:1325372	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1393401 : 1456028

Bacillus_thuringiensis_phage(11.11%)

transposase,integrase,holin

attL 1443690:1443705|attR 1456041:1456056

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWY58219.1\|1393401_1394664_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AWY58220.1\|1394945_1395554_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
AWY58221.1\|1395704_1396595_+	ATPase	NA	NA	NA	NA
AWY58222.1\|1396720_1397542_+	hydrolase	NA	NA	NA	NA
AWY58223.1\|1397721_1398426_-	aquaporin	NA	NA	NA	NA
AWY58224.1\|1398731_1399028_+	H-NS histone	NA	NA	NA	NA
AWY58225.1\|1399130_1400195_-	glycosyl transferase	NA	NA	NA	NA
AWY58226.1\|1400263_1400437_+	hypothetical protein	NA	NA	NA	NA
AWY58227.1\|1400717_1401110_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA
AWY58228.1\|1401203_1401755_+	transcriptional activator FlhC	NA	NA	NA	NA
AWY58229.1\|1401751_1401838_+	transcriptional regulator	NA	NA	NA	NA
AWY58230.1\|1401956_1402817_+	flagellar motor stator protein MotA	NA	NA	NA	NA
AWY58231.1\|1402833_1403868_+	flagellar motor protein MotB	NA	NA	NA	NA
AWY58232.1\|1403898_1404279_+	response regulator	NA	NA	NA	NA
AWY58233.1\|1404310_1406542_+	chemotaxis protein CheA	NA	NA	NA	NA
AWY58234.1\|1406572_1407100_+	chemotaxis protein CheW	NA	NA	NA	NA
AWY58235.1\|1409125_1410073_+	chemotaxis protein CheR	NA	NA	NA	NA
AWY58236.1\|1410069_1410774_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA
AWY58237.1\|1410770_1411874_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
AWY58238.1\|1411959_1412355_+	response regulator	Q56AR1	Bacillus_thuringiensis_phage	2.7e-07	32.8
AWY58239.1\|1412356_1413085_+	protein phosphatase CheZ	NA	NA	NA	NA
AWY58240.1\|1413255_1413789_+	hypothetical protein	NA	NA	NA	NA
AWY58241.1\|1413811_1415125_+	hypothetical protein	NA	NA	NA	NA
AWY58242.1\|1415304_1415805_+	VOC family protein	NA	NA	NA	NA
AWY58243.1\|1415905_1417372_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
AWY58244.1\|1417740_1418958_+	flagellar biosynthesis protein FlhB	NA	NA	NA	NA
AWY58245.1\|1418954_1421057_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
AWY58246.1\|1421053_1422787_+	flagellar biosynthesis protein FlhF	NA	NA	NA	NA
AWY58247.1\|1422779_1423592_+	flagellar biosynthesis protein FlhG	NA	NA	NA	NA
AWY58248.1\|1423616_1424348_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA
AWY58249.1\|1424700_1426122_+	adenosylhomocysteinase	S4VPF6	Pandoravirus	9.9e-44	29.9
AWY58250.1\|1426284_1426638_+\|holin	phage holin family protein	NA	NA	NA	NA
AWY58251.1\|1426655_1427486_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
AWY58252.1\|1427567_1428788_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	6.2e-236	98.5
AWY58253.1\|1428974_1430465_-	6-aminohexanoate hydrolase	NA	NA	NA	NA
AWY58254.1\|1430553_1431246_-	dienelactone hydrolase family protein	NA	NA	NA	NA
AWY58255.1\|1433098_1434241_+	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AWY58256.1\|1434399_1435518_-	MFS transporter	NA	NA	NA	NA
AWY58257.1\|1435907_1436597_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
AWY58258.1\|1436670_1436919_-	hypothetical protein	NA	NA	NA	NA
AWY60297.1\|1436981_1437275_+	H-NS histone	NA	NA	NA	NA
AWY60298.1\|1437514_1438705_+	cation transporter	NA	NA	NA	NA
AWY60299.1\|1438869_1439328_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AWY58259.1\|1439418_1440075_-	exonuclease	A0A2L0UZL4	Agrobacterium_phage	1.5e-31	37.1
AWY58260.1\|1440071_1440716_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AWY58261.1\|1440729_1440891_-	hypothetical protein	NA	NA	NA	NA
AWY58262.1\|1441316_1441952_+	septal ring lytic transglycosylase RlpA family lipoprotein	F5B3X9	Synechococcus_phage	1.9e-23	65.5
AWY58263.1\|1442046_1442934_-	rRNA (cytidine-2'-O-)-methyltransferase	NA	NA	NA	NA
AWY58264.1\|1442932_1443415_+	YraN family protein	NA	NA	NA	NA
AWY58265.1\|1443537_1444116_+	phosphoheptose isomerase	NA	NA	NA	NA
1443690:1443705	attL	NA	NA	NA	NA
AWY58266.1\|1444134_1444935_+	BON domain-containing protein	NA	NA	NA	NA
AWY60300.1\|1444961_1445294_+	cytochrome C	NA	NA	NA	NA
AWY58267.1\|1445550_1446642_+\|integrase	integrase	W6MYA3	Pseudomonas_phage	6.2e-54	40.5
AWY58268.1\|1446783_1447431_+	alpha/beta hydrolase	NA	NA	NA	NA
AWY58269.1\|1447427_1448636_+	DNA-binding protein	B6SBZ6	Clostridium_virus	3.3e-32	27.9
AWY58270.1\|1449936_1450254_+	hypothetical protein	NA	NA	NA	NA
AWY58271.1\|1450253_1450823_+	hypothetical protein	NA	NA	NA	NA
AWY58272.1\|1452668_1453937_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.8e-43	42.7
AWY58273.1\|1454456_1456028_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
1456041:1456056	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1943880 : 1953111

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWY58683.1\|1943880_1945833_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.2e-148	49.5
AWY58684.1\|1946096_1947227_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.8e-24	38.0
AWY58685.1\|1947258_1949268_+	chloride transporter	S4VT78	Pandoravirus	1.7e-52	35.2
AWY58686.1\|1949443_1950259_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.3e-36	32.9
AWY60350.1\|1950323_1951007_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	3.3e-05	26.0
AWY58687.1\|1951003_1951531_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AWY58688.1\|1951566_1953111_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.3e-24	31.2

DBSCAN-SWA_6

2334180 : 2342828

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWY58997.1\|2334180_2335581_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.1e-79	38.7
AWY60376.1\|2335612_2336536_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.9
AWY58998.1\|2336593_2337586_+	ADP-L-glycero-D-mannoheptose-6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
AWY58999.1\|2337657_2337975_+	competence protein ComE	NA	NA	NA	NA
AWY60377.1\|2338309_2339212_+	cysteine synthase B	A0A1X9I5F1	Streptococcus_phage	4.3e-53	39.9
AWY59000.1\|2339306_2340599_-	lytic murein transglycosylase B	NA	NA	NA	NA
AWY59001.1\|2340726_2341650_+	histone deacetylase	A0A2K9KZC4	Tupanvirus	3.2e-43	36.2
AWY60378.1\|2341985_2342828_-	lysophospholipase	A7K906	Acanthocystis_turfacea_chlorella_virus	3.8e-11	24.6

DBSCAN-SWA_7

2612430 : 2707420

104

uncultured_Caudovirales_phage(24.44%)

terminase,plate,tRNA,protease,head,capsid,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWY59219.1\|2612430_2613957_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	7.3e-85	36.2
AWY59220.1\|2615361_2617056_-	single-stranded-DNA-specific exonuclease RecJ	A0A0K2FM92	Brevibacillus_phage	1.4e-28	27.5
AWY60408.1\|2617071_2618157_-	regulator	NA	NA	NA	NA
AWY59221.1\|2618510_2619764_+	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA
AWY59222.1\|2619783_2620506_+	lipoprotein-releasing system ATP-binding protein LolD	G9BWD6	Planktothrix_phage	3.1e-33	38.2
AWY59223.1\|2620510_2621299_+	TatD family deoxyribonuclease	NA	NA	NA	NA
AWY59224.1\|2623925_2624753_+	alpha/beta hydrolase	NA	NA	NA	NA
AWY60409.1\|2624796_2624910_+	CTP synthetase	NA	NA	NA	NA
AWY59225.1\|2624994_2626656_+	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.4e-150	52.0
AWY59226.1\|2626652_2627507_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.0e-48	41.3
AWY59227.1\|2627611_2628895_+	enolase	W6LP63	Streptococcus_phage	9.3e-150	62.1
AWY59228.1\|2628986_2629418_+	cell division protein FtsB	NA	NA	NA	NA
AWY59229.1\|2629579_2629924_-	hypothetical protein	NA	NA	NA	NA
AWY59230.1\|2630012_2630963_-	redox-regulated molecular chaperone Hsp33	NA	NA	NA	NA
AWY59231.1\|2631001_2631526_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
AWY59232.1\|2631671_2632523_+	hypothetical protein	NA	NA	NA	NA
AWY59233.1\|2632797_2633700_+	alpha/beta hydrolase	NA	NA	NA	NA
AWY59234.1\|2633901_2634741_+	phosphatase	NA	NA	NA	NA
AWY59235.1\|2634804_2635434_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
AWY59236.1\|2635532_2636198_+\|protease	site-2 protease family protein	NA	NA	NA	NA
AWY59237.1\|2636206_2637409_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AWY59238.1\|2637405_2638023_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AWY59239.1\|2638067_2638970_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
AWY60410.1\|2639080_2640223_+	hypothetical protein	NA	NA	NA	NA
AWY59240.1\|2640229_2641006_+	MBL fold metallo-hydrolase	U5PVD0	Bacillus_phage	1.9e-09	26.6
AWY59241.1\|2641186_2641441_-	hypothetical protein	NA	NA	NA	NA
AWY59242.1\|2641346_2641616_-	hypothetical protein	NA	NA	NA	NA
AWY60412.1\|2641672_2642836_-	cupin	NA	NA	NA	NA
AWY59243.1\|2642928_2643474_+	peptidylprolyl isomerase	NA	NA	NA	NA
AWY59244.1\|2643453_2644752_-	hypothetical protein	NA	NA	NA	NA
AWY60411.1\|2644738_2647408_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	2.2e-28	24.0
AWY59245.1\|2647579_2648881_+	alpha/beta hydrolase	C7BGE7	Burkholderia_phage	2.6e-147	58.7
AWY60413.1\|2648831_2649074_-	hypothetical protein	C7BGF0	Burkholderia_phage	9.3e-19	59.2
AWY60414.1\|2649082_2649556_-	hypothetical protein	B5TA88	Burkholderia_phage	2.3e-05	71.4
AWY59246.1\|2649564_2649894_-	hypothetical protein	NA	NA	NA	NA
AWY59247.1\|2650007_2651324_-	pyridoxal phosphate biosynthetic protein PdxJ	NA	NA	NA	NA
AWY59248.1\|2651323_2651773_-	ACP synthase	NA	NA	NA	NA
AWY59249.1\|2651769_2652375_-	hypothetical protein	NA	NA	NA	NA
AWY59250.1\|2652371_2652707_-	hypothetical protein	NA	NA	NA	NA
AWY59251.1\|2653081_2653570_-	hypothetical protein	NA	NA	NA	NA
AWY60415.1\|2653523_2654024_-	transcriptional regulator	NA	NA	NA	NA
AWY59252.1\|2654140_2654350_+	hypothetical protein	NA	NA	NA	NA
AWY59253.1\|2654436_2654967_+	hypothetical protein	C7BGG0	Burkholderia_phage	4.4e-29	46.8
AWY60416.1\|2654980_2655313_+	hypothetical protein	NA	NA	NA	NA
AWY59254.1\|2655914_2656478_+	hypothetical protein	NA	NA	NA	NA
AWY59255.1\|2656541_2656721_+	hypothetical protein	NA	NA	NA	NA
AWY59256.1\|2656851_2657322_+	hypothetical protein	NA	NA	NA	NA
AWY59257.1\|2657443_2659936_+	virulence protein E	A0A2D1GN57	Marinobacter_phage	3.6e-97	41.8
AWY59258.1\|2660153_2660741_+	hypothetical protein	NA	NA	NA	NA
AWY59259.1\|2661121_2661970_+	DUF4747 domain-containing protein	NA	NA	NA	NA
AWY60417.1\|2662165_2662570_+	hypothetical protein	NA	NA	NA	NA
AWY59260.1\|2662721_2663291_+	MarR family transcriptional regulator	NA	NA	NA	NA
AWY59261.1\|2663253_2665239_+\|terminase	terminase	A0A2D1GMT1	Marinobacter_phage	2.7e-180	53.4
AWY59262.1\|2665249_2665456_+	hypothetical protein	NA	NA	NA	NA
AWY59263.1\|2665452_2666946_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	7.5e-135	51.2
AWY59264.1\|2666942_2668037_+	peptidase S14	A0A2H4JDI2	uncultured_Caudovirales_phage	2.3e-48	36.2
AWY59265.1\|2668063_2668408_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	3.0e-15	49.5
AWY59266.1\|2668442_2669468_+\|capsid	minor capsid protein E	A0A2H4J890	uncultured_Caudovirales_phage	1.7e-109	59.1
AWY59267.1\|2669471_2669762_+	hypothetical protein	NA	NA	NA	NA
AWY59268.1\|2669763_2670294_+\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	9.2e-11	28.0
AWY59269.1\|2670283_2670817_+	hypothetical protein	Q9JML9	Wolbachia_phage	6.2e-23	39.5
AWY59270.1\|2670819_2671500_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.2e-18	34.4
AWY59271.1\|2671564_2671771_+	hypothetical protein	NA	NA	NA	NA
AWY59272.1\|2671767_2672112_+\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.4e-23	50.9
AWY59273.1\|2672108_2673002_+\|plate	baseplate J protein	A0A1J0I2M3	Salmonella_phage	8.4e-49	40.1
AWY59274.1\|2672994_2673570_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.0e-32	43.2
AWY59275.1\|2673557_2675021_+	hypothetical protein	A4JWL8	Burkholderia_virus	8.0e-214	78.0
AWY59276.1\|2675036_2675489_+\|tail	tail assembly chaperone	A4JWL9	Burkholderia_virus	7.0e-44	76.8
AWY59277.1\|2675554_2676724_+\|tail	phage tail protein	A0A2H4J869	uncultured_Caudovirales_phage	3.7e-161	73.2
AWY59278.1\|2676734_2677238_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.2e-41	50.0
AWY59279.1\|2677307_2677610_+\|tail	phage tail assembly protein	V5YST8	Pseudomonas_phage	1.5e-05	37.2
AWY59280.1\|2677697_2680109_+\|tail	phage tail protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.2e-62	35.5
AWY59281.1\|2680117_2680999_+	oxidoreductase	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-30	37.4
AWY60418.1\|2680973_2681180_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	4.0e-15	61.2
AWY59282.1\|2681189_2682242_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.0e-79	44.8
AWY59283.1\|2682317_2682512_+	hypothetical protein	NA	NA	NA	NA
AWY59284.1\|2682504_2683047_+	glycosyl hydrolase	A4JX20	Burkholderia_virus	9.8e-85	90.6
AWY59285.1\|2683046_2683592_+	lysozyme	Q8W6S5	Burkholderia_virus	1.0e-81	95.0
AWY59286.1\|2683735_2684524_+	restriction endonuclease subunit M	Q8W6S4	Burkholderia_virus	1.8e-151	96.9
AWY59287.1\|2684564_2685275_-	LysR family transcriptional regulator	A4PE26	Ralstonia_virus	1.4e-38	41.5
AWY59288.1\|2685286_2685802_-	hypothetical protein	NA	NA	NA	NA
AWY59289.1\|2685773_2686247_-	hypothetical protein	NA	NA	NA	NA
AWY59290.1\|2686239_2686746_-	hypothetical protein	A4PE24	Ralstonia_virus	1.5e-18	39.4
AWY59291.1\|2686742_2687168_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.4e-14	46.0
AWY59292.1\|2687229_2687511_-	hypothetical protein	NA	NA	NA	NA
AWY60419.1\|2687510_2687975_-	hypothetical protein	C7BGE3	Burkholderia_phage	9.7e-49	60.4
AWY59293.1\|2688056_2688626_+	DUF159 family protein	A4JX27	Burkholderia_virus	2.0e-88	82.3
AWY59294.1\|2689746_2690208_+	DNA-binding protein	K4ICM4	Acidithiobacillus_phage	8.4e-45	62.1
AWY59295.1\|2691971_2693111_+	RpiR family transcriptional regulator	NA	NA	NA	NA
AWY59296.1\|2693107_2693941_+	hypothetical protein	NA	NA	NA	NA
AWY59297.1\|2694140_2694356_-	DNA mismatch repair protein	NA	NA	NA	NA
AWY59298.1\|2695564_2695837_+	hypothetical protein	NA	NA	NA	NA
AWY59299.1\|2696101_2696905_-	inositol monophosphatase	NA	NA	NA	NA
AWY59300.1\|2697207_2698128_+	RNA methyltransferase	NA	NA	NA	NA
AWY59301.1\|2698329_2699112_+	serine acetyltransferase	NA	NA	NA	NA
AWY59302.1\|2699203_2699425_+	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA
AWY59303.1\|2699454_2700255_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
AWY59304.1\|2700278_2700770_-	peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	8.2e-06	29.8
AWY59305.1\|2700850_2701426_-	peptidyl-prolyl cis-trans isomerase	A0A1V0SCU1	Indivirus	2.4e-12	40.0
AWY59306.1\|2701481_2702147_-	hypothetical protein	NA	NA	NA	NA
AWY60420.1\|2702434_2703832_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	2.4e-42	33.8
AWY59307.1\|2703879_2704818_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
AWY59308.1\|2704920_2705892_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
AWY59309.1\|2705935_2707420_+\|tRNA	tRNA(Ile)-lysidine synthetase	NA	NA	NA	NA

DBSCAN-SWA_8

3586231 : 3652935

Stx2-converting_phage(54.55%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWY59957.1\|3586231_3587803_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.7e-148	53.4
AWY59958.1\|3587832_3588180_-\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
AWY59959.1\|3588176_3588584_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
AWY60506.1\|3588841_3589288_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
AWY59960.1\|3589553_3589829_-	hypothetical protein	NA	NA	NA	NA
AWY59961.1\|3589760_3589997_+	hypothetical protein	NA	NA	NA	NA
AWY60507.1\|3590783_3591476_-	hypothetical protein	NA	NA	NA	NA
AWY59962.1\|3591941_3592199_-	hypothetical protein	NA	NA	NA	NA
AWY60508.1\|3592418_3592712_-	hypothetical protein	NA	NA	NA	NA
AWY59963.1\|3592726_3592915_+	hypothetical protein	NA	NA	NA	NA
AWY59964.1\|3593148_3596172_-	Fis family transcriptional regulator	NA	NA	NA	NA
AWY59965.1\|3596174_3597191_-	hypothetical protein	NA	NA	NA	NA
AWY59966.1\|3600034_3600340_-	hypothetical protein	NA	NA	NA	NA
AWY59967.1\|3600357_3600690_-	paar motif family protein	NA	NA	NA	NA
AWY60509.1\|3600823_3601036_-	hypothetical protein	NA	NA	NA	NA
AWY59968.1\|3601172_3601664_-	hypothetical protein	NA	NA	NA	NA
AWY59969.1\|3601641_3604977_-	type IV secretion protein Rhs	NA	NA	NA	NA
AWY59970.1\|3605085_3607488_-	type VI secretion system protein	NA	NA	NA	NA
AWY59971.1\|3607484_3608084_-	hypothetical protein	NA	NA	NA	NA
AWY60510.1\|3608080_3608638_-	hypothetical protein	NA	NA	NA	NA
AWY59972.1\|3608765_3611174_-	type VI secretion system protein	NA	NA	NA	NA
AWY59973.1\|3611170_3611770_-	hypothetical protein	NA	NA	NA	NA
AWY60511.1\|3611766_3612324_-	hypothetical protein	NA	NA	NA	NA
AWY59974.1\|3612460_3613294_-	hypothetical protein	NA	NA	NA	NA
AWY59975.1\|3613296_3616095_-	type IV secretion protein Rhs	A0A2H4JCD4	uncultured_Caudovirales_phage	1.5e-27	24.1
AWY59976.1\|3616620_3616887_+	PAAR domain-containing protein	NA	NA	NA	NA
AWY59977.1\|3616910_3618338_+	hypothetical protein	NA	NA	NA	NA
AWY59978.1\|3618366_3620217_-	type VI secretion system ImpG/VasA family protein	NA	NA	NA	NA
AWY59979.1\|3621709_3621928_+	hypothetical protein	NA	NA	NA	NA
AWY59980.1\|3622688_3624167_+	poly(3-hydroxybutyrate) depolymerase	NA	NA	NA	NA
AWY59981.1\|3624470_3624806_-	DNA-binding protein	NA	NA	NA	NA
AWY59982.1\|3625122_3626409_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.3e-172	71.8
AWY59983.1\|3626541_3627447_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.7e-129	75.1
AWY59984.1\|3628507_3629899_+	preprotein translocase	NA	NA	NA	NA
AWY59985.1\|3630522_3632580_-	hypothetical protein	NA	NA	NA	NA
AWY59986.1\|3632582_3633023_-	hypothetical protein	NA	NA	NA	NA
AWY59987.1\|3633019_3633298_-	hypothetical protein	NA	NA	NA	NA
AWY59988.1\|3634174_3634597_-	hypothetical protein	NA	NA	NA	NA
AWY59989.1\|3635098_3635689_-	hypothetical protein	NA	NA	NA	NA
AWY59990.1\|3635843_3637580_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
AWY59991.1\|3637604_3637829_-	hypothetical protein	NA	NA	NA	NA
AWY59992.1\|3637857_3638667_-	hypothetical protein	NA	NA	NA	NA
AWY59993.1\|3638676_3648096_-	cell surface protein	A0A0R6PJK4	Moraxella_phage	4.4e-31	30.9
AWY59994.1\|3648498_3648843_-	hypothetical protein	NA	NA	NA	NA
AWY59995.1\|3649023_3649251_+	hypothetical protein	NA	NA	NA	NA
AWY59996.1\|3649350_3650319_+	hypothetical protein	A0A0H4INH5	Stenotrophomonas_phage	6.3e-58	42.3
AWY59997.1\|3650315_3650516_+	hypothetical protein	NA	NA	NA	NA
AWY59998.1\|3650582_3652154_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
AWY59999.1\|3652183_3652531_-\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
AWY60000.1\|3652527_3652935_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2

DBSCAN-SWA_9

3666401 : 3720789

Burkholderia_virus(93.85%)

transposase,terminase,holin,integrase,head,capsid,tail,portal

attL 3666156:3666206|attR 3720919:3720969

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3666156:3666206	attL	NA	NA	NA	NA
AWY60512.1\|3666401_3667073_-	DUF159 family protein	Q8W6R8	Burkholderia_virus	1.2e-135	99.6
AWY60013.1\|3667158_3667800_+	hypothetical protein	Q8W6R9	Burkholderia_virus	1.2e-118	100.0
AWY60014.1\|3667932_3669024_-	hypothetical protein	Q8W6S0	Burkholderia_virus	1.5e-212	100.0
AWY60015.1\|3669051_3669786_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	3.6e-138	100.0
AWY60016.1\|3669782_3670343_-	PAAR domain-containing protein	Q8W6S2	Burkholderia_virus	7.5e-104	100.0
AWY60017.1\|3670524_3671259_-	hypothetical protein	Q8W6S3	Burkholderia_virus	1.6e-130	100.0
AWY60018.1\|3671511_3672300_-	restriction endonuclease subunit M	Q8W6S4	Burkholderia_virus	1.5e-155	99.6
AWY60019.1\|3672443_3672989_-	lysozyme	Q8W6S5	Burkholderia_virus	2.4e-78	91.7
AWY60020.1\|3672988_3673480_-	glycosyl hydrolase	Q6JIK8	Burkholderia_virus	7.8e-89	100.0
AWY60021.1\|3673472_3673685_-\|holin	holin	Q8W6S7	Burkholderia_virus	6.6e-29	100.0
AWY60022.1\|3673727_3674462_-	hypothetical protein	Q8W6S8	Burkholderia_virus	1.2e-146	100.0
AWY60513.1\|3674461_3674728_-	hypothetical protein	Q8W6S9	Burkholderia_virus	2.5e-49	100.0
AWY60023.1\|3674772_3678078_-	host specificity protein	Q8W6T0	Burkholderia_virus	0.0e+00	100.0
AWY60024.1\|3678074_3678659_-\|tail	tail assembly protein	Q8W6T1	Burkholderia_virus	6.2e-101	99.0
AWY60025.1\|3678655_3679408_-	hydrolase Nlp/P60	Q8W6T2	Burkholderia_virus	6.0e-149	100.0
AWY60026.1\|3679457_3680141_-\|tail	phage minor tail protein L	Q8W6T3	Burkholderia_virus	8.5e-134	100.0
AWY60027.1\|3680137_3681526_-	hypothetical protein	Q8W6T4	Burkholderia_virus	7.9e-272	99.8
AWY60514.1\|3681534_3681873_-\|tail	phage tail protein	Q8W6T5	Burkholderia_virus	8.0e-61	100.0
AWY60028.1\|3681872_3685934_-\|tail	phage tail tape measure protein	Q8W6T6	Burkholderia_virus	0.0e+00	98.6
AWY60029.1\|3685947_3686232_-\|tail	phage tail protein	Q8W6T7	Burkholderia_virus	2.6e-44	100.0
AWY60030.1\|3686231_3686696_-\|tail	phage tail protein	Q6JIM0	Burkholderia_virus	4.3e-81	96.1
AWY60031.1\|3686723_3687182_-\|tail	phage tail protein	Q8W6T9	Burkholderia_virus	2.2e-77	100.0
AWY60032.1\|3687243_3687591_-	hypothetical protein	Q6JIM2	Burkholderia_virus	4.5e-59	100.0
AWY60033.1\|3687587_3688010_-	hypothetical protein	A4JX05	Burkholderia_virus	5.0e-68	98.6
AWY60034.1\|3688002_3688329_-\|head,tail	head-tail adaptor protein	Q8W6U2	Burkholderia_virus	1.2e-56	100.0
AWY60035.1\|3688328_3688895_-	hypothetical protein	Q8W6U3	Burkholderia_virus	5.4e-102	99.5
AWY60036.1\|3688901_3689087_-	hypothetical protein	Q8W6U4	Burkholderia_virus	2.1e-23	93.4
AWY60037.1\|3689146_3690454_-\|capsid	phage major capsid protein	Q8W6U5	Burkholderia_virus	1.1e-227	99.3
AWY60038.1\|3690556_3691525_-\|capsid	capsid protein	A4JX00	Burkholderia_virus	8.0e-162	95.3
AWY60039.1\|3691521_3692781_-\|portal	phage portal protein	Q8W6U7	Burkholderia_virus	4.7e-239	99.8
AWY60040.1\|3692785_3692971_-	hypothetical protein	Q8W6U8	Burkholderia_virus	3.2e-19	93.4
AWY60041.1\|3692967_3694680_-\|terminase	terminase	Q8W6U9	Burkholderia_virus	0.0e+00	100.0
AWY60042.1\|3694689_3695175_-\|terminase	terminase	Q8W6V0	Burkholderia_virus	1.0e-88	100.0
AWY60043.1\|3695322_3695679_-	HNH endonuclease	Q8W6N0	Burkholderia_virus	5.5e-60	92.4
AWY60044.1\|3695739_3695997_+	addiction module toxin RelE	Q8W6N1	Burkholderia_virus	2.4e-41	100.0
AWY60045.1\|3695993_3696380_+	transcriptional regulator	Q8W6N2	Burkholderia_virus	1.4e-64	99.2
AWY60046.1\|3697249_3697513_+	hypothetical protein	NA	NA	NA	NA
AWY60047.1\|3697733_3699614_+	ATP-dependent endonuclease	E5E3R2	Burkholderia_phage	3.8e-269	76.8
AWY60048.1\|3699616_3700819_+	hypothetical protein	NA	NA	NA	NA
AWY60049.1\|3700887_3701178_+	hypothetical protein	NA	NA	NA	NA
AWY60050.1\|3701476_3702233_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
AWY60051.1\|3702246_3702915_-	hypothetical protein	Q8W6N4	Burkholderia_virus	6.6e-107	95.7
AWY60052.1\|3702923_3703184_-	hypothetical protein	Q8W6N5	Burkholderia_virus	4.7e-45	100.0
AWY60053.1\|3703159_3703492_-	hypothetical protein	Q8W6N6	Burkholderia_virus	1.8e-60	100.0
AWY60054.1\|3703494_3703935_-	hypothetical protein	Q6JIF7	Burkholderia_virus	9.5e-54	72.5
AWY60055.1\|3703931_3704288_-	hypothetical protein	Q8W6N8	Burkholderia_virus	2.1e-59	100.0
AWY60056.1\|3704284_3704836_-	hypothetical protein	A4JX56	Burkholderia_virus	4.9e-92	94.5
AWY60057.1\|3704832_3705825_-	helix-turn-helix domain-containing protein	Q6JIG0	Burkholderia_virus	9.0e-177	99.7
AWY60058.1\|3705978_3706239_-	helix-turn-helix domain-containing protein	Q6JIG2	Burkholderia_virus	8.4e-26	69.8
AWY60059.1\|3706235_3707057_-	hypothetical protein	Q8W6P2	Burkholderia_virus	1.1e-143	97.8
AWY60060.1\|3707091_3707898_-	hypothetical protein	H2BDG1	Pseudomonas_virus	2.2e-32	61.5
AWY60061.1\|3707912_3708353_-	hypothetical protein	Q6JIG6	Burkholderia_virus	2.0e-67	87.7
AWY60062.1\|3708567_3708786_+	hypothetical protein	Q6JIG7	Burkholderia_virus	8.6e-24	80.6
AWY60063.1\|3708782_3709115_-	hypothetical protein	Q6JIG8	Burkholderia_virus	6.7e-52	90.9
AWY60064.1\|3709794_3710097_-	hypothetical protein	Q3HQY6	Burkholderia_phage	6.3e-33	73.0
AWY60515.1\|3710736_3711126_+	type II toxin-antitoxin system death-on-curing family toxin	A0A222YZ88	Escherichia_phage	1.8e-16	39.8
AWY60065.1\|3711159_3711360_-	hypothetical protein	NA	NA	NA	NA
AWY60066.1\|3712629_3712905_+	hypothetical protein	Q8W6Q1	Burkholderia_virus	6.8e-42	93.4
AWY60067.1\|3712915_3713047_+	hypothetical protein	Q8W6Q2	Burkholderia_virus	2.0e-07	72.5
AWY60068.1\|3713497_3713647_+	hypothetical protein	Q8W6Q6	Burkholderia_virus	4.1e-17	89.8
AWY60069.1\|3713643_3714456_+\|transposase	transposase	Q8W6Q7	Burkholderia_virus	2.7e-139	94.4
AWY60070.1\|3714717_3715425_+	hypothetical protein	Q8W6Q8	Burkholderia_virus	2.9e-121	99.1
AWY60071.1\|3715438_3716110_+	hypothetical protein	Q8W6Q9	Burkholderia_virus	1.4e-125	100.0
AWY60516.1\|3716112_3716508_+	hypothetical protein	Q8W6R0	Burkholderia_virus	8.5e-70	99.2
AWY60072.1\|3716507_3716786_+	hypothetical protein	Q6JII7	Burkholderia_virus	3.5e-38	85.9
AWY60517.1\|3716989_3717853_+	hypothetical protein	Q8W6R3	Burkholderia_virus	4.9e-155	99.7
AWY60073.1\|3717849_3718842_+	phage Gp37/Gp68 family protein	Q8W6R4	Burkholderia_virus	5.4e-206	100.0
AWY60074.1\|3718838_3719339_+	hypothetical protein	Q8W6R5	Burkholderia_virus	1.9e-90	100.0
AWY60075.1\|3719464_3719689_+	hypothetical protein	Q8W6R6	Burkholderia_virus	1.0e-35	100.0
AWY60076.1\|3719688_3720789_+\|integrase	integrase	Q8W6R7	Burkholderia_virus	1.9e-215	100.0
3720919:3720969	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP022215

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

634650 : 640716

Burkholderia_virus(28.57%)

integrase

attL 629510:629525|attR 649871:649886

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
629510:629525	attL	NA	NA	NA	NA
AWY60938.1\|634650_635223_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	1.7e-55	65.9
AWY60939.1\|635841_636339_+	hypothetical protein	NA	NA	NA	NA
AWY60940.1\|636579_636858_+	hypothetical protein	NA	NA	NA	NA
AWY62592.1\|636767_637184_-	HicB family protein	A0A0A8JBA5	Ralstonia_phage	1.2e-26	58.9
AWY60941.1\|637227_637407_-	addiction module toxin, HicA family	A0A0D4DC32	Acinetobacter_phage	1.2e-18	74.6
AWY60942.1\|637686_638214_+	hypothetical protein	A4JWV5	Burkholderia_virus	6.2e-60	66.1
AWY60943.1\|638210_638945_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	3.0e-52	50.9
AWY60944.1\|638954_640070_+	hypothetical protein	E5E3X7	Burkholderia_phage	8.6e-176	80.4
AWY62593.1\|640140_640716_-	resolvase	A0A219Y9V9	Aeromonas_phage	2.3e-23	39.0
649871:649886	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP022214

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP022215

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection