CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP032616	Pseudomonas sp. DY-1 chromosome, complete genome	0 crisprs	DEDDh,csa3,cas3,DinG,WYL	0	0	2	0
CP032615	Pseudomonas sp. DY-1 plasmid p.1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1447232 : 1454261

uncultured_Caudovirales_phage(85.71%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYF86923.1\|1447232_1447901_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	3.4e-95	85.2
AYF86924.1\|1448015_1448408_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	8.7e-51	76.0
AYF86925.1\|1448409_1448766_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.7e-32	60.2
AYF86926.1\|1448765_1449068_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	4.1e-24	62.0
AYF86927.1\|1449064_1449400_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.4e-41	73.0
AYF86928.1\|1449396_1450380_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.3e-143	76.1
AYF86929.1\|1450465_1451479_+	glutathione S-transferase family protein	NA	NA	NA	NA
AYF86930.1\|1451463_1452858_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
AYF86931.1\|1452980_1454261_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.2

DBSCAN-SWA_2

3394109 : 3464757

Pseudomonas_phage(61.9%)

protease,head,capsid,holin,tail,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYF88579.1\|3394109_3394700_-\|protease	ATP-dependent protease	NA	NA	NA	NA
AYF88580.1\|3394709_3395426_-	LrgB family protein	NA	NA	NA	NA
AYF88581.1\|3395422_3395785_-	CidA/LrgA family protein	NA	NA	NA	NA
AYF88582.1\|3395992_3396448_+	MaoC family dehydratase	NA	NA	NA	NA
AYF88583.1\|3396532_3398260_+	peptidase C13	NA	NA	NA	NA
AYF88584.1\|3398288_3398930_+	oxidoreductase	NA	NA	NA	NA
AYF88585.1\|3399028_3399640_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AYF88586.1\|3399692_3400160_+	YbaK/EbsC family protein	NA	NA	NA	NA
AYF88587.1\|3400283_3400574_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
AYF88588.1\|3400566_3401196_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
AYF88589.1\|3401200_3402553_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
AYF88590.1\|3402753_3403626_-	LysR family transcriptional regulator	NA	NA	NA	NA
AYF88591.1\|3403756_3404914_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
AYF88592.1\|3405222_3406551_+	MFS transporter	NA	NA	NA	NA
AYF88593.1\|3406590_3407418_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
AYF88594.1\|3408124_3409183_-	hypothetical protein	NA	NA	NA	NA
AYF88595.1\|3411310_3411883_-	DUF1311 domain-containing protein	NA	NA	NA	NA
AYF88596.1\|3411864_3414669_-	hypothetical protein	NA	NA	NA	NA
AYF88597.1\|3414622_3416995_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.6e-09	34.3
AYF88598.1\|3417267_3419169_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
AYF88599.1\|3419484_3421005_+	aldehyde dehydrogenase	NA	NA	NA	NA
AYF88600.1\|3421279_3422332_-	AraC family transcriptional regulator	NA	NA	NA	NA
AYF88601.1\|3422628_3423996_+	ethanolamine permease	NA	NA	NA	NA
AYF88602.1\|3424051_3425446_+	ethanolamine ammonia-lyase subunit EutB	NA	NA	NA	NA
AYF88603.1\|3425462_3426296_+	ethanolamine ammonia-lyase subunit EutC	NA	NA	NA	NA
AYF88604.1\|3426421_3427678_+	OprD family porin	NA	NA	NA	NA
AYF88605.1\|3427696_3429820_-	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
AYF90872.1\|3430008_3430467_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYF88606.1\|3430509_3432096_-	protein kinase	NA	NA	NA	NA
AYF88607.1\|3432248_3432908_+	DedA family protein	NA	NA	NA	NA
AYF88608.1\|3432918_3433737_+	zinc-dependent peptidase	NA	NA	NA	NA
AYF88609.1\|3433815_3434343_+	inorganic pyrophosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	2.3e-70	72.3
AYF88610.1\|3434513_3435053_+	hypothetical protein	NA	NA	NA	NA
AYF88611.1\|3435079_3435883_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	6.5e-101	65.4
AYF88612.1\|3436067_3436328_+	hypothetical protein	NA	NA	NA	NA
AYF88613.1\|3436321_3436783_-	DUF1353 domain-containing protein	A0A1Y0SZG8	Pseudomonas_phage	3.6e-11	33.1
AYF88614.1\|3436779_3437349_-	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	3.2e-62	64.5
AYF88615.1\|3437403_3437757_-	hypothetical protein	NA	NA	NA	NA
AYF88616.1\|3439395_3439962_-	hypothetical protein	A0A1B0YZW5	Pseudomonas_phage	3.0e-76	76.1
AYF88617.1\|3439986_3440184_-	hypothetical protein	NA	NA	NA	NA
AYF88618.1\|3440192_3440762_-	hypothetical protein	A0A1B0Z051	Pseudomonas_phage	7.5e-51	52.1
AYF88619.1\|3440789_3442907_-	hypothetical protein	NA	NA	NA	NA
AYF88620.1\|3442985_3444500_-	hypothetical protein	NA	NA	NA	NA
AYF88621.1\|3444496_3444910_-	hypothetical protein	NA	NA	NA	NA
AYF88622.1\|3444913_3446689_-	hypothetical protein	A0A1W6JTA3	Pseudomonas_phage	4.8e-112	43.2
AYF88623.1\|3446688_3447192_-	hypothetical protein	NA	NA	NA	NA
AYF88624.1\|3447188_3449288_-\|tail	phage tail protein	A0A0U3TH20	Pseudomonas_phage	2.2e-124	42.8
AYF88625.1\|3449460_3449829_-	hypothetical protein	A0A0U4KLC4	Pseudomonas_phage	2.9e-16	40.4
AYF88626.1\|3449828_3450617_-	hypothetical protein	NA	NA	NA	NA
AYF88627.1\|3450642_3451068_-	hypothetical protein	NA	NA	NA	NA
AYF88628.1\|3451123_3451741_-	hypothetical protein	A0A0U4J906	Pseudomonas_phage	6.6e-37	45.5
AYF88629.1\|3451737_3452286_-	hypothetical protein	NA	NA	NA	NA
AYF88630.1\|3452282_3452603_-\|head,tail	phage gp6-like head-tail connector protein	A0A2D1GNK0	Pseudomonas_phage	3.7e-31	64.8
AYF90873.1\|3453076_3454315_-\|capsid	phage major capsid protein	A0A1B5FPI9	Escherichia_phage	3.4e-117	58.1
AYF90874.1\|3454380_3455046_-\|head,protease	HK97 family phage prohead protease	A0A2D1GNL2	Pseudomonas_phage	1.2e-60	55.0
AYF88631.1\|3455020_3456244_-\|portal	phage portal protein	A0A2D1GNU4	Pseudomonas_phage	1.5e-101	47.9
AYF88632.1\|3456240_3458058_-\|terminase	terminase large subunit	C7BGG7	Burkholderia_phage	2.1e-131	45.7
AYF88633.1\|3457931_3458411_-	hypothetical protein	NA	NA	NA	NA
AYF88634.1\|3458564_3459011_-	HNH endonuclease	A0A0U4B0J6	Pseudomonas_phage	1.7e-29	49.3
AYF88635.1\|3459010_3459361_-\|holin	pyocin R2, holin	A0A2H4J893	uncultured_Caudovirales_phage	2.2e-21	46.8
AYF88636.1\|3459972_3460341_-	hypothetical protein	NA	NA	NA	NA
AYF90875.1\|3460337_3462560_-	toprim domain-containing protein	A0A2D1GN57	Marinobacter_phage	3.5e-181	45.6
AYF88637.1\|3462570_3462795_-	hypothetical protein	NA	NA	NA	NA
AYF88638.1\|3462787_3463303_-	hypothetical protein	NA	NA	NA	NA
AYF88639.1\|3463615_3463885_-	transcriptional regulator	G8C7U2	Escherichia_phage	4.8e-08	49.3
AYF88640.1\|3463992_3464757_+	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	8.2e-69	55.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage