CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP032667	Escherichia coli str. K-12 substr. MG1655 chromosome, complete genome	0 crisprs	csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	0	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1019143 : 1026282

Escherichia_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG18275.1\|1019143_1019782_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
AYG18276.1\|1019873_1021040_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.1e-120	60.6
AYG18277.1\|1021036_1021945_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	4.3e-117	76.5
AYG18278.1\|1022140_1022908_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	56.3
AYG18279.1\|1022958_1023615_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	4.7e-49	46.3
AYG18280.1\|1023720_1026282_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.0e-30	20.6

DBSCAN-SWA_2

1406863 : 1418073

Enterobacteria_phage(56.25%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG18617.1\|1406863_1407064_-	transcriptional regulator	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
AYG18618.1\|1407195_1407501_-	hypothetical protein	U5P0J0	Shigella_phage	2.2e-49	96.0
AYG18619.1\|1407500_1407863_-	hypothetical protein	K7PH61	Enterobacteria_phage	2.0e-65	99.1
AYG18620.1\|1407853_1408390_-	HD family hydrolase	K7PKJ9	Enterobacteria_phage	3.7e-100	98.9
AYG18621.1\|1408517_1409342_-	DUF2303 family protein	K7PJQ6	Enterobacteria_phage	7.8e-150	99.3
AYG18622.1\|1409407_1409770_-	hypothetical protein	Q8SBF8	Shigella_phage	1.9e-60	99.2
AYG18623.1\|1410492_1410987_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	1.2e-86	98.1
AYG18624.1\|1410986_1411262_+	phage N-6-adenine-methyltransferase	Q8SBE9	Shigella_phage	2.6e-49	100.0
AYG21527.1\|1411311_1411830_+	hypothetical protein	M1FN94	Enterobacteria_phage	4.6e-39	68.8
AYG18625.1\|1411856_1412297_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	9.5e-54	70.1
AYG18626.1\|1412268_1412613_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	3.1e-44	86.2
AYG18627.1\|1412911_1414243_-	hypothetical protein	U5P0I5	Shigella_phage	6.8e-63	36.7
AYG18628.1\|1414239_1415160_-	glycosyltransferase	M1FQW5	Enterobacteria_phage	4.2e-160	89.9
AYG18629.1\|1415156_1415519_-	glucose translocase	U5P0S6	Shigella_phage	1.0e-53	88.3
AYG18630.1\|1415671_1416829_-	DUF4102 domain-containing protein	A5VW56	Enterobacteria_phage	5.7e-223	100.0
AYG18631.1\|1417140_1418073_-	hypothetical protein	E7DYY8	Enterobacteria_phage	2.5e-165	99.0

DBSCAN-SWA_3

1665966 : 1675407

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG18845.1\|1665966_1666893_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-23	30.8
AYG18846.1\|1666897_1667629_+	ABC transporter permease	NA	NA	NA	NA
AYG18847.1\|1667609_1667717_-	protein YohO	NA	NA	NA	NA
AYG18848.1\|1667776_1668508_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AYG18849.1\|1668729_1670415_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AYG18850.1\|1670411_1671131_+	DNA-binding response regulator	NA	NA	NA	NA
AYG18851.1\|1671177_1671648_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
AYG18852.1\|1671687_1672149_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AYG18853.1\|1672429_1674274_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.9
AYG18854.1\|1674270_1675407_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.9e-162	97.7

DBSCAN-SWA_4

1767475 : 1776146

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG18928.1\|1767475_1768870_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.9e-19	31.9
AYG18929.1\|1769044_1769938_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	1.0e-46	42.0
AYG18930.1\|1770310_1771396_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.2e-101	53.9
AYG18931.1\|1771395_1772295_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-29	35.2
AYG18932.1\|1772352_1773234_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.9e-106	63.8
AYG18933.1\|1773233_1773791_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	7.8e-53	57.5
AYG18934.1\|1773787_1775035_+	O16 family O-antigen flippase	NA	NA	NA	NA
AYG18935.1\|1775042_1776146_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	1.0e-133	59.5

DBSCAN-SWA_5

2209815 : 2253144

Enterobacteria_phage(34.48%)

terminase,integrase,lysis,tail,protease

attL 2217391:2217406|attR 2243539:2243554

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG19348.1\|2209815_2210637_-\|protease	serine protease	NA	NA	NA	NA
AYG19349.1\|2210736_2210820_-	hypothetical protein	NA	NA	NA	NA
AYG19350.1\|2210912_2211248_-	acid shock protein	NA	NA	NA	NA
AYG19351.1\|2211644_2212898_-	MFS transporter	NA	NA	NA	NA
AYG19352.1\|2213004_2213898_+	LysR family transcriptional regulator	NA	NA	NA	NA
AYG19353.1\|2214032_2215253_+	protein mlc	NA	NA	NA	NA
AYG19354.1\|2215377_2216073_+	dethiobiotin synthase	NA	NA	NA	NA
AYG21555.1\|2216025_2217318_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
2217391:2217406	attL	NA	NA	NA	NA
AYG19355.1\|2217476_2218091_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
AYG19356.1\|2218133_2218988_-	dimethylsulfoxide reductase	NA	NA	NA	NA
AYG19357.1\|2218989_2219607_-	dimethylsulfoxide reductase	A0A077SL61	Escherichia_phage	9.5e-76	59.6
AYG21556.1\|2219617_2222041_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.7e-208	48.6
AYG19358.1\|2222101_2224528_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.2
AYG19359.1\|2224726_2225032_-	DUF1161 domain-containing protein	NA	NA	NA	NA
AYG21557.1\|2225139_2225850_+	YnfC family lipoprotein	NA	NA	NA	NA
AYG19360.1\|2225852_2226413_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
AYG19361.1\|2226447_2226789_-	DUF1283 family protein	NA	NA	NA	NA
AYG19362.1\|2226923_2227250_+	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
AYG19363.1\|2227455_2228670_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AYG19364.1\|2228681_2229701_+	starvation-sensing protein RspB	E3SJ82	Synechococcus_phage	4.3e-17	26.2
AYG19365.1\|2229758_2229869_+	transporter	NA	NA	NA	NA
AYG19366.1\|2229888_2231085_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.8e-134	59.0
AYG19367.1\|2232611_2232803_-	DUF1482 family protein	NA	NA	NA	NA
AYG19368.1\|2232799_2232988_-	division inhibition protein DicB	NA	NA	NA	NA
AYG19369.1\|2233555_2233774_-	hypothetical protein	NA	NA	NA	NA
AYG19370.1\|2233803_2233974_-	hypothetical protein	NA	NA	NA	NA
AYG19371.1\|2233933_2234089_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.0e-07	53.2
AYG19372.1\|2234255_2234663_-	transcriptional regulator	K7PM82	Enterobacteria_phage	4.4e-13	54.7
AYG19373.1\|2234746_2234977_+	division inhibition gene dicB repressor	NA	NA	NA	NA
AYG19374.1\|2235859_2236192_-	protein FlxA	NA	NA	NA	NA
AYG19375.1\|2236394_2236700_-	hypothetical protein	NA	NA	NA	NA
AYG19376.1\|2236724_2236964_+	antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
AYG19377.1\|2236963_2237251_+	mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
AYG19378.1\|2237322_2237478_+	protein HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
AYG19379.1\|2237694_2237946_+	hypothetical protein	NA	NA	NA	NA
AYG19380.1\|2238012_2238291_+	hypothetical protein	NA	NA	NA	NA
AYG19381.1\|2238292_2239342_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.7e-113	57.3
AYG19382.1\|2239355_2240108_+	antitermination protein Q	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
AYG19383.1\|2240529_2240742_-	cold-shock protein CspF	NA	NA	NA	NA
AYG19384.1\|2241042_2241258_+	cold-shock protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
AYG19385.1\|2242011_2242227_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.1e-31	94.4
AYG19386.1\|2242231_2242543_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
AYG19387.1\|2242539_2243073_+	lysozyme from lambdoid prophage Qin	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
AYG19388.1\|2243069_2243567_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
2243539:2243554	attR	NA	NA	NA	NA
AYG19389.1\|2243929_2244142_+	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
AYG19390.1\|2244152_2244341_+	cold-shock protein	NA	NA	NA	NA
AYG19391.1\|2244487_2244643_+	hypothetical protein	NA	NA	NA	NA
AYG19392.1\|2244814_2244988_+	protein GnsB	NA	NA	NA	NA
AYG19393.1\|2245139_2245550_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
AYG19394.1\|2245607_2245841_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
AYG19395.1\|2246229_2246799_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.5e-91	98.3
AYG19396.1\|2246749_2247712_+\|tail	tail fiber protein	K7PHC9	Enterobacteria_phage	4.1e-41	70.9
AYG19397.1\|2247711_2248287_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
AYG19398.1\|2248384_2248975_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
AYG19399.1\|2249291_2249525_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
AYG19400.1\|2250311_2251595_+	MFS transporter	NA	NA	NA	NA
AYG19401.1\|2251683_2253144_+	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	4.3e-42	29.6

DBSCAN-SWA_6

2445705 : 2476036

Escherichia_phage(42.86%)

tail,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG19552.1\|2445705_2446839_+	porin OmpN	Q1MVN1	Enterobacteria_phage	1.1e-117	58.5
AYG19553.1\|2446979_2447414_+	universal stress protein F	A0A1W6JNV4	Morganella_phage	1.8e-28	52.8
AYG19554.1\|2448374_2448608_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	5.4e-32	87.0
AYG19555.1\|2448924_2449515_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
AYG19556.1\|2449612_2450188_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-102	94.8
AYG19557.1\|2450187_2453550_-\|tail	side tail fiber protein	X2KTY7	Enterobacteria_phage	8.1e-12	36.4
AYG21565.1\|2453614_2453830_-	hypothetical protein	Q687E7	Enterobacteria_phage	1.4e-29	98.4
AYG19558.1\|2453872_2454853_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	8.9e-185	99.1
AYG19559.1\|2456310_2456511_-	hypothetical protein	NA	NA	NA	NA
AYG19560.1\|2456618_2456978_-	hypothetical protein	NA	NA	NA	NA
AYG19561.1\|2456958_2457222_-	hypothetical protein	A0A0R6PD10	Moraxella_phage	6.3e-21	56.1
AYG19562.1\|2457359_2458817_-	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
AYG19563.1\|2459013_2459199_-	Spanin from lambdoid prophage Rac, outer membrane subunit	K7PHU6	Enterobacteria_phage	2.8e-15	98.2
AYG19564.1\|2459869_2460616_-	DNA replication protein DnaC	V5UQI5	Shigella_phage	3.8e-111	78.9
AYG19565.1\|2460622_2461480_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	8.3e-70	84.5
AYG19566.1\|2461492_2461915_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.5e-69	95.0
AYG19567.1\|2461937_2462234_-	transcriptional regulator	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
AYG19568.1\|2462357_2462834_+	Rac prophage repressor	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	53.4
AYG19569.1\|2463097_2463277_+	hypothetical protein	NA	NA	NA	NA
AYG19570.1\|2463287_2463443_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.1e-08	55.3
AYG21566.1\|2463439_2463928_-	superinfection exclusion protein B	NA	NA	NA	NA
AYG19571.1\|2464369_2464591_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	4.9e-35	97.3
AYG21567.1\|2464590_2464761_+	hypothetical protein	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
AYG19572.1\|2464835_2465111_+	protein RacC	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
AYG19573.1\|2465212_2467813_+	exodeoxyribonuclease 8	A0A0U2I1R6	Escherichia_phage	5.1e-248	63.5
AYG19574.1\|2467805_2468615_+	DNA recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
AYG19575.1\|2468671_2468866_+	restriction alleviation and modification enhancement protein	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
AYG19576.1\|2468858_2469068_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
AYG19577.1\|2469146_2469362_+	hypothetical protein	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
AYG19578.1\|2469363_2470599_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	5.5e-240	98.8
AYG19579.1\|2470650_2471586_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
AYG19580.1\|2471714_2473088_-	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
AYG19581.1\|2473565_2474549_-	zinc transporter ZntB	NA	NA	NA	NA
AYG21568.1\|2474803_2476036_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.1e-17	39.5

DBSCAN-SWA_7

2667340 : 2681721

Shigella_phage(33.33%)

tail,portal,integrase,plate

attL 2664716:2664729|attR 2682747:2682760

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2664716:2664729	attL	NA	NA	NA	NA
AYG19750.1\|2667340_2668072_+	helix-turn-helix-type transcriptional regulator	Q9EYF2	Enterobacteria_phage	2.7e-53	50.5
AYG19751.1\|2668292_2668697_+	DUF1398 domain-containing protein	NA	NA	NA	NA
AYG19752.1\|2669396_2669720_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	3.0e-41	65.4
AYG19753.1\|2669822_2669987_-	isocitrate dehydrogenase	Q77Z09	Phage_21	4.2e-23	96.3
AYG19754.1\|2670220_2671054_-	5-methylcytosine-specific restriction enzyme A	NA	NA	NA	NA
AYG19755.1\|2671160_2671715_-	DNA-invertase from lambdoid prophage e14	A0A1S6L009	Salmonella_phage	2.8e-87	88.3
AYG19756.1\|2672123_2672537_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	7.1e-27	53.6
AYG19757.1\|2672508_2673111_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	9.2e-92	83.5
AYG19758.1\|2673110_2673899_-\|tail	tail fiber protein	U5P0I1	Shigella_phage	2.7e-51	94.4
AYG19759.1\|2673902_2674487_-	DUF2313 domain-containing protein	O22003	Shigella_phage	2.0e-112	98.5
AYG19760.1\|2674477_2675269_-\|plate	baseplate J/gp47 family protein	M1FQW3	Enterobacteria_phage	4.7e-144	97.3
AYG19761.1\|2675195_2675669_-\|portal	phage portal protein	A0A1B5FP95	Escherichia_phage	3.6e-75	100.0
AYG19762.1\|2675668_2675851_-	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
AYG19763.1\|2675862_2677230_-	GntR family transcriptional regulator	A0A1C9IIA1	Salmonella_phage	5.1e-223	99.2
AYG19764.1\|2677219_2677399_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
AYG19765.1\|2677574_2678132_-	protein YmfL	S5FXP0	Shigella_phage	7.4e-96	95.7
AYG19766.1\|2678175_2678376_-	transcriptional regulator	U5P445	Shigella_phage	1.9e-30	98.5
AYG19767.1\|2678466_2679141_+	LexA family transcriptional repressor	U5P0T5	Shigella_phage	1.2e-132	100.0
AYG19768.1\|2679315_2679624_+	hypothetical protein	I6PDF6	Cronobacter_phage	3.8e-09	80.0
AYG19769.1\|2679561_2679903_-	hypothetical protein	NA	NA	NA	NA
AYG19770.1\|2680019_2680331_+	hypothetical protein	NA	NA	NA	NA
AYG19771.1\|2680367_2680613_+	excisionase-like protein from lambdoid prophage 14	NA	NA	NA	NA
AYG19772.1\|2680593_2681721_+\|integrase	integrase	O21925	Phage_21	7.2e-122	61.5
2682747:2682760	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3272403 : 3316766

Enterobacteria_phage(57.69%)

transposase,terminase,integrase,lysis,capsid,protease

attL 3295478:3295524|attR 3316780:3316826

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG20290.1\|3272403_3273516_-\|transposase	IS4-like element IS421 family transposase	NA	NA	NA	NA
AYG20291.1\|3273592_3273745_-	protein HokE	NA	NA	NA	NA
AYG20292.1\|3274036_3274186_-	hypothetical protein	NA	NA	NA	NA
AYG20293.1\|3274197_3275316_+	glutamate--cysteine ligase	NA	NA	NA	NA
AYG20294.1\|3275381_3275630_+	DUF1158 domain-containing protein	NA	NA	NA	NA
AYG20295.1\|3275694_3276063_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
AYG20296.1\|3276156_3276810_+	NAD(P)H nitroreductase	NA	NA	NA	NA
AYG20297.1\|3276917_3278165_+	miniconductance mechanosensitive channel YbdG	NA	NA	NA	NA
AYG20298.1\|3278245_3279622_-	phenylalanine-specific permease	NA	NA	NA	NA
AYG20299.1\|3279723_3282867_-	Cu(+)/Ag(+) efflux RND transporter permease subunit CusA	S5VTK5	Leptospira_phage	2.2e-59	22.1
AYG20300.1\|3282878_3284102_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit CusB	NA	NA	NA	NA
AYG20301.1\|3284117_3284450_-	Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone	NA	NA	NA	NA
AYG20302.1\|3284607_3285981_-	cation efflux system protein CusC	NA	NA	NA	NA
AYG20303.1\|3286137_3286821_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.0e-30	35.1
AYG20304.1\|3286810_3288253_+	Cu(+)/Ag(+) sensor histidine kinase CusS	A0A1V0SGX0	Hokovirus	3.0e-11	26.2
AYG20305.1\|3288402_3290640_+	bacteriophage N4 adsorption protein B	NA	NA	NA	NA
AYG20306.1\|3290626_3293599_+	bacteriophage N4 adsorption protein A	NA	NA	NA	NA
AYG20307.1\|3293599_3294490_+	DUF4434 family protein	NA	NA	NA	NA
AYG20308.1\|3294672_3295434_+	porin thermoregulatory protein EnvY	NA	NA	NA	NA
3295478:3295524	attL	NA	NA	NA	NA
AYG20309.1\|3295947_3296901_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
AYG20310.1\|3297150_3297900_-	transcriptional regulator	NA	NA	NA	NA
AYG20311.1\|3298802_3299429_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AYG20312.1\|3299373_3299511_-\|capsid	nucleocapsid protein	NA	NA	NA	NA
AYG20313.1\|3299483_3300227_-\|terminase	phage terminase large subunit family protein	K7PMH7	Enterobacteria_phage	4.1e-73	93.1
AYG20314.1\|3300201_3300747_-	DNA-packaging protein NU1	A0A0K2FIG2	Enterobacteria_phage	4.0e-94	98.3
AYG20315.1\|3301135_3301330_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	8.7e-28	100.0
AYG20316.1\|3301494_3301701_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
AYG20317.1\|3301986_3302397_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-71	98.5
AYG20318.1\|3302687_3302981_+	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	5.7e-47	97.9
AYG20319.1\|3303012_3303474_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	3.9e-74	97.4
AYG20320.1\|3303470_3303968_-	lysozyme RrrD	M1FJA0	Enterobacteria_phage	1.1e-90	98.2
AYG20321.1\|3303967_3304183_-\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	9.0e-34	100.0
AYG20322.1\|3304755_3305823_+	porin	Q1MVN1	Enterobacteria_phage	2.0e-150	77.9
AYG20323.1\|3305827_3306844_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.4e-187	100.0
AYG20324.1\|3306881_3307100_-	hypothetical protein	Q38586	Enterobacteria_phage	1.1e-13	70.2
AYG20325.1\|3307241_3307625_-	antitermination protein Q	A0A088CD47	Shigella_phage	4.4e-55	83.3
AYG20326.1\|3307710_3307851_-	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
AYG20327.1\|3307847_3308210_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
AYG20328.1\|3308206_3308497_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	3.3e-47	93.8
AYG20329.1\|3308489_3308660_-	protein NinE from lambdoid prophage DLP12	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
AYG20330.1\|3308659_3309115_-	hypothetical protein	I6PD71	Cronobacter_phage	4.1e-60	66.9
AYG20331.1\|3309111_3309213_-	hypothetical protein	NA	NA	NA	NA
AYG20332.1\|3309329_3310127_-	AraC family transcriptional regulator	NA	NA	NA	NA
AYG20333.1\|3310136_3310688_-	kinase inhibitor	NA	NA	NA	NA
AYG20334.1\|3311152_3312679_-	recombinase family protein	Q3HQV4	Burkholderia_phage	7.9e-31	27.8
AYG20335.1\|3312933_3313266_-	multidrug SMR transporter	NA	NA	NA	NA
AYG20336.1\|3313576_3314739_-\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-51	40.6
AYG20337.1\|3314801_3314897_-	protein ren	M1FPD5	Enterobacteria_phage	1.5e-09	100.0
AYG20338.1\|3315219_3315483_+	hypothetical protein	B6DZ61	Enterobacteria_phage	1.8e-44	97.7
AYG20339.1\|3315602_3316766_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	8.9e-200	86.6
3316780:3316826	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3550805 : 3611699

Acinetobacter_phage(22.22%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG20546.1\|3550805_3552839_-\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	3.4e-21	27.4
AYG20547.1\|3552967_3553555_+	transcriptional regulator	NA	NA	NA	NA
AYG20548.1\|3553568_3555041_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AYG20549.1\|3555054_3556725_+\|holin	oxygen-dependent choline dehydrogenase	A0A1V0S9M4	Catovirus	4.7e-61	31.2
AYG20550.1\|3556937_3557606_+	hypothetical protein	NA	NA	NA	NA
AYG20551.1\|3557681_3557894_+	hypothetical protein	NA	NA	NA	NA
AYG20552.1\|3557848_3558544_-	lactate utilization protein C	NA	NA	NA	NA
AYG20553.1\|3558536_3559964_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
AYG20554.1\|3559974_3560694_-	(Fe-S)-binding protein	NA	NA	NA	NA
AYG20555.1\|3561220_3562075_-	transcriptional regulator	NA	NA	NA	NA
AYG20556.1\|3562300_3563626_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	2.5e-113	47.6
AYG20557.1\|3563734_3563971_+	DUF1471 domain-containing protein	NA	NA	NA	NA
AYG20558.1\|3563982_3564576_+	protein RclC	NA	NA	NA	NA
AYG20559.1\|3565848_3567011_-\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-51	40.6
AYG20560.1\|3567057_3567945_-	attaching and effacing-like protein	NA	NA	NA	NA
AYG20561.1\|3569059_3569161_+	hypothetical protein	NA	NA	NA	NA
AYG20562.1\|3569524_3569788_+	50S ribosomal protein L31 type B	NA	NA	NA	NA
AYG20563.1\|3569787_3569928_+	50S ribosomal protein L36	NA	NA	NA	NA
AYG20564.1\|3569962_3570190_-	hypothetical protein	NA	NA	NA	NA
AYG20565.1\|3570965_3571556_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
AYG20566.1\|3571630_3572218_+	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA
AYG20567.1\|3572275_3572944_+	fimbrial chaperone EcpB	NA	NA	NA	NA
AYG20568.1\|3572969_3575495_+	usher protein EcpC	NA	NA	NA	NA
AYG20569.1\|3575484_3577128_+	fimbria adhesin EcpD	NA	NA	NA	NA
AYG20570.1\|3577096_3577807_+	fimbrial chaperone EcpE	NA	NA	NA	NA
AYG20571.1\|3578119_3578449_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
AYG20572.1\|3578696_3579311_-	DUF1440 domain-containing protein	NA	NA	NA	NA
AYG20573.1\|3579728_3580418_+	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
AYG20574.1\|3580414_3581371_+	xanthine dehydrogenase family protein subunit M	NA	NA	NA	NA
AYG20575.1\|3581367_3583566_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	A0A0P0I429	Acinetobacter_phage	2.5e-38	25.8
AYG20576.1\|3583575_3584532_+	XdhC family protein	NA	NA	NA	NA
AYG20577.1\|3584510_3584921_+	hypothetical protein	NA	NA	NA	NA
AYG20578.1\|3585205_3586606_+	DUF4102 domain-containing protein	A0A221SAN4	Ralstonia_phage	9.5e-07	28.4
AYG20579.1\|3586722_3587163_+	hypothetical protein	NA	NA	NA	NA
AYG20580.1\|3587159_3587384_+	DNA-binding protein	NA	NA	NA	NA
AYG20581.1\|3587502_3588357_+	hypothetical protein	NA	NA	NA	NA
AYG20582.1\|3588383_3589082_+	recombinase family protein	NA	NA	NA	NA
AYG20583.1\|3589353_3589980_+	inovirus Gp2 family protein	NA	NA	NA	NA
AYG20584.1\|3590070_3590802_-	hypothetical protein	NA	NA	NA	NA
AYG20585.1\|3591996_3593001_+	ornithine carbamoyltransferase	NA	NA	NA	NA
AYG20586.1\|3593139_3593898_+	IclR family transcriptional regulator	NA	NA	NA	NA
AYG20587.1\|3593902_3595513_-	glycoside hydrolase family 43 protein	NA	NA	NA	NA
AYG20588.1\|3595524_3596907_-	MFS transporter	NA	NA	NA	NA
AYG20589.1\|3597133_3599101_-	YjhG/YagF family D-xylonate dehydratase	NA	NA	NA	NA
AYG20590.1\|3599115_3600024_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
AYG20591.1\|3600318_3601473_+\|transposase	IS481-like element ISEc19 family transposase	NA	NA	NA	NA
AYG20592.1\|3601566_3601917_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
AYG20593.1\|3603499_3604546_+	Fe(3+) ions import ATP-binding protein FbpC	G3M9Y6	Bacillus_virus	1.5e-33	37.7
AYG20594.1\|3604654_3605587_-	homocysteine S-methyltransferase	NA	NA	NA	NA
AYG21608.1\|3605573_3606977_-	S-methylmethionine permease	NA	NA	NA	NA
AYG20595.1\|3607184_3608201_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.4e-187	100.0
AYG20596.1\|3610547_3611699_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	8.9e-43	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage