CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP032662	Lactobacillus pentosus strain ZFM94 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0
CP032660	Lactobacillus pentosus strain ZFM94 plasmid unnamed1, complete sequence	0 crisprs	NA	0	1
CP032661	Lactobacillus pentosus strain ZFM94 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
CP032659	Lactobacillus pentosus strain ZFM94 chromosome, complete genome	5 crisprs	cas8e,cse2gr11,cas7,cas5,cas6e,cas3,DinG,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,RT	32	10

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12419 : 72422

Lactobacillus_phage(16.0%)

transposase,integrase

attL 25706:25739|attR 79686:79719

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG42689.1\|12419_13634_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	7.8e-114	52.3
AYG42690.1\|13831_14359_+	hypothetical protein	NA	NA	NA	NA
AYG42691.1\|15848_16931_+	theronine dehydrogenase	A0A2K9L339	Tupanvirus	2.4e-18	31.2
AYG42692.1\|18263_18980_-	LysM domain-containing protein	K4ID66	Lactobacillus_phage	3.6e-10	55.7
AYG42693.1\|19362_20388_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	7.1e-44	35.7
AYG42694.1\|20768_21962_+	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.9e-29	36.4
AYG42695.1\|21961_22801_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA
AYG42696.1\|22808_23726_+	glycine/betaine ABC transporter	NA	NA	NA	NA
AYG42697.1\|23845_24061_-	hypothetical protein	A0A1S5SBP9	Streptococcus_phage	1.8e-05	49.1
AYG42698.1\|24503_24674_-	hypothetical protein	NA	NA	NA	NA
AYG42750.1\|24807_25458_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.3e-18	31.7
25706:25739	attL	NA	NA	NA	NA
AYG42699.1\|25966_27229_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	3.4e-35	36.1
AYG42700.1\|27413_27851_-	MarR family transcriptional regulator	NA	NA	NA	NA
AYG42701.1\|28234_30271_-	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	3.0e-62	33.2
AYG42702.1\|30370_30982_-	recombinase family protein	A0A219YA40	Aeromonas_phage	2.4e-18	35.5
AYG42703.1\|31275_32196_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	2.1e-50	37.9
AYG42704.1\|32578_32668_+	hypothetical protein	NA	NA	NA	NA
AYG42705.1\|33004_34573_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
AYG42706.1\|34695_35850_-	cation:proton antiporter	NA	NA	NA	NA
AYG42707.1\|37190_38033_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	5.7e-156	98.9
AYG42708.1\|38086_38338_-\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	2.1e-37	95.2
AYG42709.1\|39025_39838_-	AAA family ATPase	A0A059NT77	Lactococcus_phage	4.6e-62	51.0
AYG42710.1\|42186_42276_+	hypothetical protein	NA	NA	NA	NA
AYG42711.1\|42834_43287_+	ribonucleotide reductase assembly protein NrdI	NA	NA	NA	NA
AYG42712.1\|43293_45462_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	8.1e-255	60.3
AYG42713.1\|45568_46495_+	ribonucleoside-diphosphate reductase	A0A2H4P8A9	Corynebacterium_phage	5.9e-37	32.1
AYG42714.1\|46509_47460_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	4.7e-98	54.3
AYG42715.1\|47588_48335_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.6e-15	29.4
AYG42716.1\|48513_49146_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	2.8e-14	33.2
AYG42717.1\|49232_50135_+	YitT family protein	M1Q1P6	Streptococcus_phage	1.1e-51	40.3
AYG42718.1\|50720_51068_-	hypothetical protein	NA	NA	NA	NA
AYG42719.1\|51069_51870_-	ParA family protein	F0PIG8	Enterococcus_phage	1.6e-67	50.6
AYG42720.1\|52300_52507_-	hypothetical protein	NA	NA	NA	NA
AYG42721.1\|52721_53000_+	hypothetical protein	NA	NA	NA	NA
AYG42722.1\|53111_53294_-	hypothetical protein	A0A2P0ZLG6	Lactobacillus_phage	2.7e-07	66.0
AYG42723.1\|54982_55279_+	hypothetical protein	NA	NA	NA	NA
AYG42724.1\|55727_56255_+	hypothetical protein	NA	NA	NA	NA
AYG42725.1\|57784_58072_-	type III secretion system protein PrgO	NA	NA	NA	NA
AYG42751.1\|58055_59009_-	ParA family protein	A0A1X9I765	Streptococcus_phage	3.5e-21	28.3
AYG42726.1\|59751_61290_+	plasmid replication protein	NA	NA	NA	NA
AYG42727.1\|63284_64068_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AYG42728.1\|65184_67989_+	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	2.0e-72	27.7
AYG42729.1\|68048_68321_+	hypothetical protein	NA	NA	NA	NA
AYG42730.1\|68356_68824_+	replication initiation protein RepA	NA	NA	NA	NA
AYG42731.1\|69185_70355_-	relaxase	NA	NA	NA	NA
AYG42732.1\|71155_71425_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYG42733.1\|71411_71783_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AYG42734.1\|71834_72422_-\|integrase	site-specific integrase	D2XR58	Bacillus_phage	2.2e-21	34.3
79686:79719	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032659

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CRISPR-Cas detection and classification

Crispr_ID: CP032659_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032659_1

29849-31033

Orphan

Consensus_repeat	Method
GGATCACCCCCGCATACACGGGGAACAG	CRISPRCasFinder
GGATCACCCCCGCATACACGGGGAACAG	CRT
GGATCACCCCCGCATACACGGGGAACAG	PILER-CR

19 spacers

The CRISPR arrays of CP032659_1

>merge|CP032659|1|29849-31033|CRISPRCasFinder,CRT,PILER-CR
GGATCATCCCTGCATACGCGGGGAACAGTTTTTGGAGCAGTCGTCCGGTGTTGTGATGGCAGGATCACCCCCGCATACGCGGGGAACAGCTTTAGCAGTCTGGGCCGCTCGCCCCTGGGCGGGGATCACCCCCGCATACACGGGGAACAGTGAAAGGGTTGGAGGAGTTAGTCATGATTAAAAGGATCACCCCCGCATACACGGGGAACAGGGATCGTTATATTTCTCGGCCCGCCAGTACTCGGGATCACCCCCGCATACACGGGGAACAGTTTGTCGTACTCCCGAAAAACCGTTTGCATGAAAGGATCACCCCCGCATACACGGGGAACAGGGTTATACATGGCAGTCTTACGTCAAGTTTCTAGGATCACCCCCGCATACACGGGGAACAGGGCTTCCAGCCATAAATGATTTTCATGTAGTCGGGATCACCCCCGCATACACGGGGAACAGCTGGTGAAACCAGATACTACGTTAACGTATACGGGATCACCCCCGCATACACGGGGAACAGACCGGGCCAAAACGATGAGCGGCGCCACTGATAGGATCACCCCCGCATACACGGGGAACAGAATGCTTCTGCCAATCGTTCGGCACTCGCCACGGGATCACCCCCGCATACACGGGGAACAGTAAGTTTAGGGGCGCAGGTTCGAGGCCTGCAAGGGATCACCCCCGCATACACGGGGAACAGAGATTGCTTTAAGCCAGTTCGTTTAAATACTTGGGATCACCCCCGCATACACGGGGAACAGGCTGACGTTCTTCTCGCGCTTGATCGTTGGAAGGGATCACCCCCGCATACACGGGGAACAGTGAACGGAGTCGTTCACTTGACCGGCGGTATTAGGATCACCCCCGCATACACGGGGAACAGAATCATGATAAATTATTTCCCGCCACTGATAAAGGATCACCCCCGCATACACGGGGAACAGTTATCAACAATACGATTGACGGCAATTTGTTTTAGGATCACCCCCGCATACACGGGGAACAGACCTCATATGCGTTTTATGAGTTGCTTCTACCAGGATCACCCCCGCATACACGGGGAACAGGCACTGGGTCATATGTACGCAACAACCAACAGGGGATCACCCCCGCATACACGGGGAACAGCAATCATTATGCTAGTGATACTAGCAGCAGGATCACCCCCGCATACACGGGGAACAG

>CP032659|1|1|29849-31033|CRISPRCasFinder
GGATCATCCCTGCATACGCGGGGAACAG	TTTTTGGAGCAGTCGTCCGGTGTTGTGATGGCA
GGATCACCCCCGCATACGCGGGGAACAG	CTTTAGCAGTCTGGGCCGCTCGCCCCTGGGCGG
GGATCACCCCCGCATACACGGGGAACAG	TGAAAGGGTTGGAGGAGTTAGTCATGATTAAAA
GGATCACCCCCGCATACACGGGGAACAG	GGATCGTTATATTTCTCGGCCCGCCAGTACTCG
GGATCACCCCCGCATACACGGGGAACAG	TTTGTCGTACTCCCGAAAAACCGTTTGCATGAAA
GGATCACCCCCGCATACACGGGGAACAG	GGTTATACATGGCAGTCTTACGTCAAGTTTCTA
GGATCACCCCCGCATACACGGGGAACAG	GGCTTCCAGCCATAAATGATTTTCATGTAGTCG
GGATCACCCCCGCATACACGGGGAACAG	CTGGTGAAACCAGATACTACGTTAACGTATACG
GGATCACCCCCGCATACACGGGGAACAG	ACCGGGCCAAAACGATGAGCGGCGCCACTGATA
GGATCACCCCCGCATACACGGGGAACAG	AATGCTTCTGCCAATCGTTCGGCACTCGCCACG
GGATCACCCCCGCATACACGGGGAACAG	TAAGTTTAGGGGCGCAGGTTCGAGGCCTGCAAG
GGATCACCCCCGCATACACGGGGAACAG	AGATTGCTTTAAGCCAGTTCGTTTAAATACTTG
GGATCACCCCCGCATACACGGGGAACAG	GCTGACGTTCTTCTCGCGCTTGATCGTTGGAAG
GGATCACCCCCGCATACACGGGGAACAG	TGAACGGAGTCGTTCACTTGACCGGCGGTATTA
GGATCACCCCCGCATACACGGGGAACAG	AATCATGATAAATTATTTCCCGCCACTGATAAA
GGATCACCCCCGCATACACGGGGAACAG	TTATCAACAATACGATTGACGGCAATTTGTTTTA
GGATCACCCCCGCATACACGGGGAACAG	ACCTCATATGCGTTTTATGAGTTGCTTCTACCA
GGATCACCCCCGCATACACGGGGAACAG	GCACTGGGTCATATGTACGCAACAACCAACAGG
GGATCACCCCCGCATACACGGGGAACAG	CAATCATTATGCTAGTGATACTAGCAGCA
GGATCACCCCCGCATACACGGGGAACAG

>CP032659|1|1|29849-31033|CRT
GGATCATCCCTGCATACGCGGGGAACAG	TTTTTGGAGCAGTCGTCCGGTGTTGTGATGGCA
GGATCACCCCCGCATACGCGGGGAACAG	CTTTAGCAGTCTGGGCCGCTCGCCCCTGGGCGG
GGATCACCCCCGCATACACGGGGAACAG	TGAAAGGGTTGGAGGAGTTAGTCATGATTAAAA
GGATCACCCCCGCATACACGGGGAACAG	GGATCGTTATATTTCTCGGCCCGCCAGTACTCG
GGATCACCCCCGCATACACGGGGAACAG	TTTGTCGTACTCCCGAAAAACCGTTTGCATGAAA
GGATCACCCCCGCATACACGGGGAACAG	GGTTATACATGGCAGTCTTACGTCAAGTTTCTA
GGATCACCCCCGCATACACGGGGAACAG	GGCTTCCAGCCATAAATGATTTTCATGTAGTCG
GGATCACCCCCGCATACACGGGGAACAG	CTGGTGAAACCAGATACTACGTTAACGTATACG
GGATCACCCCCGCATACACGGGGAACAG	ACCGGGCCAAAACGATGAGCGGCGCCACTGATA
GGATCACCCCCGCATACACGGGGAACAG	AATGCTTCTGCCAATCGTTCGGCACTCGCCACG
GGATCACCCCCGCATACACGGGGAACAG	TAAGTTTAGGGGCGCAGGTTCGAGGCCTGCAAG
GGATCACCCCCGCATACACGGGGAACAG	AGATTGCTTTAAGCCAGTTCGTTTAAATACTTG
GGATCACCCCCGCATACACGGGGAACAG	GCTGACGTTCTTCTCGCGCTTGATCGTTGGAAG
GGATCACCCCCGCATACACGGGGAACAG	TGAACGGAGTCGTTCACTTGACCGGCGGTATTA
GGATCACCCCCGCATACACGGGGAACAG	AATCATGATAAATTATTTCCCGCCACTGATAAA
GGATCACCCCCGCATACACGGGGAACAG	TTATCAACAATACGATTGACGGCAATTTGTTTTA
GGATCACCCCCGCATACACGGGGAACAG	ACCTCATATGCGTTTTATGAGTTGCTTCTACCA
GGATCACCCCCGCATACACGGGGAACAG	GCACTGGGTCATATGTACGCAACAACCAACAGG
GGATCACCCCCGCATACACGGGGAACAG	CAATCATTATGCTAGTGATACTAGCAGCA
GGATCACCCCCGCATACACGGGGAACAG

>CP032659|1|1|30093-31033|PILER-CR
GGATCACCCCCGCATACACGGGGAACAG	TTTGTCGTACTCCCGAAAAACCGTTTGCATGAAA
GGATCACCCCCGCATACACGGGGAACAG	GGTTATACATGGCAGTCTTACGTCAAGTTTCTA
GGATCACCCCCGCATACACGGGGAACAG	GGCTTCCAGCCATAAATGATTTTCATGTAGTCG
GGATCACCCCCGCATACACGGGGAACAG	CTGGTGAAACCAGATACTACGTTAACGTATACG
GGATCACCCCCGCATACACGGGGAACAG	ACCGGGCCAAAACGATGAGCGGCGCCACTGATA
GGATCACCCCCGCATACACGGGGAACAG	AATGCTTCTGCCAATCGTTCGGCACTCGCCACG
GGATCACCCCCGCATACACGGGGAACAG	TAAGTTTAGGGGCGCAGGTTCGAGGCCTGCAAG
GGATCACCCCCGCATACACGGGGAACAG	AGATTGCTTTAAGCCAGTTCGTTTAAATACTTG
GGATCACCCCCGCATACACGGGGAACAG	GCTGACGTTCTTCTCGCGCTTGATCGTTGGAAG
GGATCACCCCCGCATACACGGGGAACAG	TGAACGGAGTCGTTCACTTGACCGGCGGTATTA
GGATCACCCCCGCATACACGGGGAACAG	AATCATGATAAATTATTTCCCGCCACTGATAAA
GGATCACCCCCGCATACACGGGGAACAG	TTATCAACAATACGATTGACGGCAATTTGTTTTA
GGATCACCCCCGCATACACGGGGAACAG	ACCTCATATGCGTTTTATGAGTTGCTTCTACCA
GGATCACCCCCGCATACACGGGGAACAG	GCACTGGGTCATATGTACGCAACAACCAACAGG
GGATCACCCCCGCATACACGGGGAACAG	CAATCATTATGCTAGTGATACTAGCAGCA
GGATCACCCCCGCATACACGGGGAACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP032659.1\|AYG39639.1\|36931_38146_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341026
CP032659.1\|AYG39628.1\|16336_16573_+\|DUF1797-family-protein	unknown	unknown	gnl\|CDD\|370128
CP032659.1\|AYG39630.1\|18993_20256_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
CP032659.1\|AYG39634.1\|31400_31958_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|180928
CP032659.1\|AYG39643.1\|42215_43607_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|236904
CP032659.1\|AYG39636.1\|33637_34474_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277320
CP032659.1\|AYG39633.1\|29118_29604_+\|hypothetical-protein	unknown	unknown	unknown
CP032659.1\|AYG39631.1\|27424_28687_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
CP032659.1\|AYG39626.1\|13594_14836_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
CP032659.1\|AYG39625.1\|12474_13524_+\|TIGR00374-family-protein	unknown	unknown	gnl\|CDD\|377103
CP032659.1\|AYG39640.1\|38138_39041_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
CP032659.1\|AYG39638.1\|36028_36919_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
CP032659.1\|AYG39635.1\|33004_33523_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP032659.1\|AYG39642.1\|40695_41655_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|366291
CP032659.1\|AYG39632.1\|28838_29048_+\|hypothetical-protein	unknown	unknown	unknown
CP032659.1\|AYG39624.1\|11448_12471_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
CP032659.1\|AYG39641.1\|39383_40709_-\|divalent-metal-cation-transporter-MntH	unknown	unknown	gnl\|CDD\|234815
CP032659.1\|AYG39629.1\|16729_18835_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
CP032659.1\|AYG39627.1\|14956_16144_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235985
CP032659.1\|AYG39637.1\|34866_35739_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117

Protein	Function_ID	Function_description	E-value
CP032659.1\|AYG39639.1\|36931_38146_+\|MFS-transporter	gnl\|CDD\|341026	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily. This family includes a group of putative arabinose efflux permease family transporters, such as alpha proteobacterium quinolone resistance protein NorA (characterized Staphylococcus aureus Quinolone resistance protein NorA belongs to a different group), Desulfovibrio dechloracetivorans bacillibactin exporter, Vibrio aerogenes antiseptic resistance protein. The biological function of those transporters remain unclear. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.13962e-60
CP032659.1\|AYG39628.1\|16336_16573_+\|DUF1797-family-protein	gnl\|CDD\|370128	pfam08796, DUF1797, Protein of unknown function (DUF1797). This is a domain of unknown function. It forms a central anti-parallel beta sheet with flanking alpha helical regions.	8.98362e-32
CP032659.1\|AYG39630.1\|18993_20256_-\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.04877e-55
CP032659.1\|AYG39634.1\|31400_31958_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|180928	PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional.	3.99353e-81
CP032659.1\|AYG39636.1\|33637_34474_-\|metallophosphoesterase	gnl\|CDD\|277320	cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.34864e-12
CP032659.1\|AYG39635.1\|33004_33523_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.27122e-08
CP032659.1\|AYG39631.1\|27424_28687_-\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.04877e-55
CP032659.1\|AYG39626.1\|13594_14836_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	5.19811e-65
CP032659.1\|AYG39625.1\|12474_13524_+\|TIGR00374-family-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	7.59025e-32
CP032659.1\|AYG39640.1\|38138_39041_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.51391e-48
CP032659.1\|AYG39638.1\|36028_36919_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.44129e-30
CP032659.1\|AYG39637.1\|34866_35739_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.92822e-17
CP032659.1\|AYG39642.1\|40695_41655_-\|ferrochelatase	gnl\|CDD\|366291	pfam00762, Ferrochelatase, Ferrochelatase.	4.4698e-117
CP032659.1\|AYG39624.1\|11448_12471_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.13373e-28
CP032659.1\|AYG39641.1\|39383_40709_-\|divalent-metal-cation-transporter-MntH	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	6.6688e-152
CP032659.1\|AYG39629.1\|16729_18835_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	1.36471e-166
CP032659.1\|AYG39627.1\|14956_16144_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235985	PRK07309, PRK07309, pyridoxal phosphate-dependent aminotransferase.	0
CP032659.1\|AYG39643.1\|42215_43607_-\|amino-acid-permease	gnl\|CDD\|236904	PRK11387, PRK11387, S-methylmethionine permease.	0

>CP032659.1|AYG39633.1|29118_29604_+|hypothetical-protein
MKTKALEDESNNTRSTTVYYDEKQLVSYYTTSTSIIEVKTAYDRKIFNGLRSLPEDNNQSIVLPAVEISWFGVAKNYQAKHIGASMILDIFRTVIKMRHVFNIGLIGIVVSSLPDALEFYTHYNFRYLHYNYDDEQAMMIPETYPLFVDIDSIVEIVGYLD
>CP032659.1|AYG39632.1|28838_29048_+|hypothetical-protein
MGGITMAVMNDKKSLKQVITVSEHKDLYNVMNNLLPTTMGQHDTISRRKSINRAVTSLRKATLRFDTQK
>CP032659.1|AYG39631.1|27424_28687_-|ISL3-family-transposase
MSQDHSTKVLLQIKDPNITDLVVQEATNGSLQVFAKLTYPVTVCARCGKRSMVKNGFKTVHIRIPRISERVTILNLKKQRFICKNCGKSSLTTTKLVKKHHQISENSLHAIDLSLTEDRTMVSIAAQYNVSTNTIIRRIKLLGQGTQPAFNGLPTMLCIDEFRSTGKQMSFIAVDAQTHDIITILPGRKNADIKDFFLNHYSKRQRDRVTRVVMDFNSQYQPAIRTLFPHAKLVADNFHLVQMALRSLNQTRVQLMKRFNPKSREYRLLKYYWRLYLKDYDSLEKRKPQWFAHLKDRMTQEQLVVAGLNLDQQFRQTYQAAHALVKSFQKRDYRSFEAALGNVENVSPQLMTNIKSFIKNRQLIKNMTTGRLSNGPIEGVNRKIKQIKRTAYGYKNWQNFIYRIQIEFKIKIEKKNPIRK
>CP032659.1|AYG39630.1|18993_20256_-|ISL3-family-transposase
MSQDHSTKVLLQIKDPNITDLVVQEATNGSLQVFAKLTYPVTVCARCGKRSMVKNGFKTVHIRIPRISERVTILNLKKQRFICKNCGKSSLTTTKLVKKHHQISENSLHAIDLSLTEDRTMVSIAAQYNVSTNTIIRRIKLLGQGTQPAFNGLPTMLCIDEFRSTGKQMSFIAVDAQTHDIITILPGRKNADIKDFFLNHYSKRQRDRVTRVVMDFNSQYQPAIRTLFPHAKLVADNFHLVQMALRSLNQTRVQLMKRFNPKSREYRLLKYYWRLYLKDYDSLEKRKPQWFAHLKDRMTQEQLVVAGLNLDQQFRQTYQAAHALVKSFQKRDYRSFEAALGNVENVSPQLMTNIKSFIKNRQLIKNMTTGRLSNGPIEGVNRKIKQIKRTAYGYKNWQNFIYRIQIEFKIKIEKKNPIRK
>CP032659.1|AYG39629.1|16729_18835_+|LTA-synthase-family-protein
MPKFIKNTVGKVNTTLGFYLLTVVLFWLKTYIAYKSEFTLGVKGPVQEFILFLNPFPTAIVLLGIALYFRGRLKYWIMMIIDAIQTTWLFANILYYREFSDFMSAGVIKSSGAASNNLGKSLGQIIHGTDFLVYADVVLLILLLAFKVIRIDPRPFKIRYAATLTMIGVALFAVDLGMSEHDRSDLLTRTFDNNYIVKYLGLNTYAGYSFYQTEKESATRAQASSSDMKSVLAYLKKNQAGENVKYFGKAKGKNVFVIHLESFQQFLIDYKVDGKEVTPNLNKFYHDKSTLSFDNFYHQVAQGKTSDAEMMMENSLFGLPTGSAMTQYGTSNTFQAAPAILAQKGYTTAAFHGDVASFWNRDNAYKSWGYDYFFYSSYYKEKADYNIGYGLKDKIFFKDSVKYLEQLPQPFYAKLITLTNHYPYELDKKNQSIDKTKTGDSTVDGYVQTAHYLDQAFAEFISYLKKAGLYKNSMIVLYGDHYGISNNHKAAIAQLLGKKSVTSFDLAQFQKVPFMIHSEGIKGGVNHTYGGEIDALPTIFDLLGIKNKGYIQFGTDLLSKQHNQTVAFRNGDFVSPTYTKISGTVYDSKTGKKLTNMTTKQKDTVKQMQNHVTTELSLSDRVIQGDLLRFYTPKGFKKVDKSKYSYKITKTLKSLKEIQAEKNTSLLSKRKGKSSESLYKTDAPELSSSSDSSSSSSSSSD
>CP032659.1|AYG39628.1|16336_16573_+|DUF1797-family-protein
MDKSELSAILKRLEAMRTTDATEVQSRRFEKEGVQRGQVAYDPATSTYTLQEFNPDQTFEFDNIDLVAIELYDLLTDN
>CP032659.1|AYG39627.1|14956_16144_-|pyridoxal-phosphate-dependent-aminotransferase
MTLFRDDLNETISQIQVSTIRQFDEEVSAIPDMVKLTLGEPDFNTPEHVKAAAKKAIDDNFSHYTGMAGLLELRQAAANFQATKYGVHYDAEDQVLVTVGATEAIATALTTICNPGDAIIVPSPIFPAYIPIIQEAHARPLFMDTGVNDFIITPKMVDDFIAAHPDEHFKGIILNYPNNPTGVTYVADEVKALAECFQRHNLWVVSDEIYSELTYGSDHVSIAKYIPDEVILINGLSKSHAMTGWRIGFLFASKEMTAQLKKVHQYYVTAATTIAQKAGVEALTNGIDDALPMRKEYQARRDFVYQTMSKLGFKIARPTGAFYIFAKIPAGFEQDSMAFCKDLARKNQLAIIPGTGFGAEGEGYVRLSYAASMEKLQLAMDRLTAYMQTPANRVD
>CP032659.1|AYG39626.1|13594_14836_+|D-alanyl-D-alanine-carboxypeptidase
MLKLIKHRLATGLVLAAGMVGLLMGTPAVHAANKADEVKAAYIMDAQSGQVVYAQNADQKLPIASLSKLMTLYLVESAIQRGQIKWTDTVPIDKNVRKMATSATLSVMPMPAKEHFTVKELFAATLVGSSNSGAIALGEYVAGSNAKFIKLMNQQAAKWQLDAHFISASGLDNTDLTNYDLKIAGTGEQGQNMVSARAVTTIARHLINDYPDVIKVADQRSVKIHKYTVPTSVQILKGEKYYDYRVPVDGLKTGYTNQAGACLVATFRQNGRRMIATTLGGAWKFTANNNLRLMLKQTERYQQVAPKTIQYQIPGTTTKLQLETDSQTTMWQNTDHPMTQTKIELWPLHRTKPNYLAAGTAVLKLRLTDPLSGTVHNVIYRTPKALTMLGPVQWATQVKKSTTVSAAAFAMAK
>CP032659.1|AYG39625.1|12474_13524_+|TIGR00374-family-protein
MTRKNIWSLLIMVALGVGISWYSLRNVKLSNLMDDIVTLNWWWLLVALGCVGLYFGLEAVVVQKFVRHRYRHYTFRNALRVPLAEQLFNGITPFSSGGQPAQIFVMAQSGIDAGRASSVALMKFVVFQAMVVLNFLFSMLIGFHYLAEKLSYLSLYVLLGFLIHFGVIVGLLLVMYWYNFTKRAVKIVLIPVGWFMKAERFAKFEQNISDKIDSFYEESLRMTKDWRMLLEVSIVTFLQLFFYYLIPYFIMRAMGVDDVNLIMVTSLNVLIFLVTSLFPIPGGAGGAEFGFTALFAKFIPTHSKLILAMLIWRILTYYLGLFLGMIAMAMHPEKAEEIPMTEDSQETEL
>CP032659.1|AYG39624.1|11448_12471_+|glycosyltransferase
MLDITMFSKADSVKGQGVGSAYLELMRLLQTHWQDEFNIKVNRYGRSAISHYHTVNPMFYLSTFMPNRGRKIGYVHFLPETLEGSLKLPRPFQVIFNRYLISFYKRMDHIVVVNPTFIPKLEAYHIKRADVTYIPNFVSKREFYEMTKSKQLRLRQQYGYDQHRFMIIGTGQIQDRKGVPDFITLAKRNPDIQFVWAGGFSFGRITDGYQDLKQVVDNPPANLSFPGIVAREKLVDYYNMADLFLLPSYNELFPMSVLEAFSCGTPVLLRDLDLYRAIIDGYYQAATDVDDMQKQIDHLRNNPAGMQFLHDKAVLAAQDYSEERLASVWHDFYLQQAKEG
>CP032659.1|AYG39634.1|31400_31958_-|adenine-phosphoribosyltransferase
MQQYQLRLGPLTRNLPLIKIAPNTRIASFVLLGDAELTQYAAQQLAQRLKHTPFDYLVTMESKGIPLAQALSQLTHHPRFIVLRKSVKPYMTHPHTIAVTAITTHTPQQLVLDDADATLLRGKRVVIVDDVISTGGSLEAANRLLQQVGAQVVAQTAILAEGAAGTRTDIEFLAKLPLFDGNSSE
>CP032659.1|AYG39635.1|33004_33523_-|GNAT-family-N-acetyltransferase
MYFKRATLDDLDQIIDILSDGRNQLAEAGVNQWQGDYPSRKQITADIMQGSAYLFNADDNATVGAVAVVPSPDETYDTANANWLNTTDPYVVIHRVAIHSSHAGHGYATQLFEKIIAHIAAEHPEIKSIRIDTHADNLAMQHLIAKMNFERVGDMVGVYHVDDVCYVYEKLL
>CP032659.1|AYG39636.1|33637_34474_-|metallophosphoesterase
MVKIAVLSDVHGNATALEAVLADARAQQVDEYWTVGDMTVRGPESERVLSLLDTVAPTAYVLGNHEENYQKVLTANPNTFTKPKQVMATVLTAFDRRQLSPEHFERCLNLPMTVTKQVGPLTIRLQHVLPTVASGHALAPTASQANFDEATTGDVDIVIYAHTHTPIMRYGTGGKLILNAGTVGLPTALNPNLRQPRASYLVLTIDASGLQQIDYRSVDFDWEQAITIAHQAHLPYVEFYEQTLRTNAYQYAPSAVAAYNTQHDMAQEARKILLENRR
>CP032659.1|AYG39637.1|34866_35739_+|AraC-family-transcriptional-regulator
MATSFQREIVTRTQPLSAWIHYHDQHAPSEIAAHWHQGIELSYTISGHIDDFTINGQHFRTSAGQLLVVNSQLIHSIHTHNTPESRALSVIYPYDYVRRLYPKIETEIIAVNDPHQFTSAQQAMYLNLQGHFDQLYLALQRPSAVTNLRLEAETVQILAELLTYFTSAKASTGVMYGKDALAVERIQKISTYVAQHYTEPISLTDVAQQINVTKEYLTRFFKKQMAMTVGQYVNLVRAQHAYEDLLGERGNLTTIASMNGFASTRALNRAFQTVYHQSAAESYKTKHTWD
>CP032659.1|AYG39638.1|36028_36919_+|alpha/beta-hydrolase
MTEKDLKQAIIELRTAFKTNDDARDAGLPREVAGVERLDDLSYGPDPKWHLLDLYRPTDARRPLPVIINIHGGGWCYGTKETYQFYGLNWAQRGFAFVNPNYRLAPDAVFPDELDDVDCYIHWVADHADEYGLDRNNVFLLGDSAGGQMAEQYAAILTNPDYRDLFGYQLTDLHFRAVVLNSAAAFPLDEGMVTGAVAAYFTPEAIQKQRNQIEAERYIQANYLPTFICTATEDFIRNNSAKLDGFLTAKGIEHVFKMYGDEKHPRGHVFLVSQKDDIAKQATDDEMAFLNAHLSK
>CP032659.1|AYG39639.1|36931_38146_+|MFS-transporter
MKAKQDRFIFKASLLSISLFLMMAPQIASALPLMYHAFKGLQAAGVQTLSTIPNFGIVAGLLISPFMVRWFHEKATIIIGLLVTLIAGTFPMYASAYVPILISRFLIGLGIGLFNSLAVSLIPQFYKRDEDELARMIGYQNVMGSVGAAIASFLVSYLVTISWHAAFAIYLLVIPVLILFALFVPLPHTATPRQTSQTTTKAAGNHQINRPVVVISILMFLVFTFYMPFSYELPSLIVNEGLGNASTAALIAGLSTLVSIPIGASFGFFFKRLHDRIFPLGFVLVAAGFLLIAVATNIIFLFIAVVILGFGFGLGVPYLYNWLDWAAPEQSLNLATTIVLVLVNIGCFVSPTIMDALAGAVGHGTPRGMMVLSGVAFICIAIYAVGHYLHVHRTQANVAGDSRD
>CP032659.1|AYG39640.1|38138_39041_+|ROK-family-protein
MTNQYLCFDIGGTNLKAGLLDANGGQIQPATSIPMAQDLAAFWQQLFDIADQYVGQIAGIAVSVPGQVDPQTGIVYHGGALPFLDQCPLQQTLAMRYQLPVAAENDGKAAALAENWRGSLQGCQNGLVLVLGTGVGGGLIIHNQLYRGSHFQAGELSMMLAASTAAPIKITGQTGSAVGMISAIAHELQLPDEHDGRQVFAALAAGDPKALEMFNAYGHQVAQIILNVQAVMDLNVVAIGGGISAQPSVVPMIQRQYAELLEQLPMIRDTLSQPQIVAAKFHNQANLIGALAALLGMATV
>CP032659.1|AYG39641.1|39383_40709_-|divalent-metal-cation-transporter-MntH
MQPRSHQSLEEINQSVAVPDVHQTAFWRKFLAYSGPGALVAVGYMDPGNWLTSLAGGGQFQYRLLTVLALAIIVAMFMQALAIKLGVVARQDLAQAIAAKLPRPIRYALWILNEIAMMATDMTGVIGTAIALKLLFGLPLLAGILLTIADVLVVLLFLRFGIRRVEFLVLAAIISVGIIFGLEVGRAHVQVGQVMLGLVPNSLIIKNHTALVLSLGILGATIMPHNLYLHSSLAQSRRYDYHDPLQVNEALRFANWDSTVHLIAAFLINALLLVLGGTLFFGHTTALASLQAVFNGLKNPAIVGALASPFMSWLFALALLITGLISSITSTLAGQIVMEGYLHIRLPLWQRRLLTRAVTLIPILIIGFMVGFSDAAFENLIIYAQVALSVALPFTLLPLVALTNNRQLMGSHVNRPAVTWLGYGLAGIITILNVYLVYSLF
>CP032659.1|AYG39642.1|40695_41655_-|ferrochelatase
MHPGLLLVNLGSPASPTTQDVKTYLQEFLSDPSVIEMPAALWQPLLRGIILPTRSWRSATFYQDSWLPAGSPLIVYSEKICEQVQADLPDWDVRLAMTYGQPDIGETLQAMVADGCEQPIVLPLFPQYTQSTHGGIHRQVEATGLPHTFIDHFYDNATYIQLLAAKVWESYQQHDFDAVIFSYHSIPTAMVRHGDPYQKECEATTAAVLAQLPELPADKVVTAYQSKFGPMPWLKPYLRNELMQLVELGKRNVLIATPSFVVDCLETLEEDYVQNYQTFKSSGGDRFELVSPMNTDPQFSQLLADLAVQKWEARAHATT
>CP032659.1|AYG39643.1|42215_43607_-|amino-acid-permease
MSKQTHLSRQMESRHVLMISLGGVIGTGLFLSSGYTIHQAGPIGTLIAYTIGAVLVYLVMLCLGELSVAMPYTGAFHVYAKKYIGPGTGFTVAILYWLTWTIALGSEFTAAGLIMQTWFPHIATWIWSLVFMVVIFTVNALSVRWFAEAEFWFASIKVVAIVVFIVLGALAMIGLLPLHGHASAPLLTNYTRNGWFPNGFGGVFTTMLTVNFAFSGTELIGITAGETKDPAHTIPTAIKTTLWRLIIFFVGSMFVMAALIPYKQAGVTQSPFVLVFKEIGIPYAADLMNFVVLTAIMSAANSGLYASTRMLWSLANEGTIPQVFKKTTKRDVPLVALITSMLGGILALLSSVYAAGSVYLVLVSISGLAVVIVWMAIALSEINFRKAYLKSGQSLDKLAYKTPGYPVVPWLAFILSGLSCLLIWFDPNQRIALYYTVPFVAICYLGYYLSRKFKRHPATDTEK

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Crispr_ID: CP032659_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032659_2

278336-278609

TypeI-E

Consensus_repeat	Method
AGGATCACCCCCGCATACACGGGGAACAG	CRISPRCasFinder
AGGATCACCCCCGTATGC	CRT
GGATCACCCCCGTATGCGCGGGGAATAG	PILER-CR

4 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of CP032659_2

>merge|CP032659|2|278336-278609|CRISPRCasFinder,CRT,PILER-CR
AAAATCACCCCCGTATGCACGGGGAATAGACTAGCGTAGAAATTTCGGTTAGTCACATTGGAGGATCACCCCCGTATGCACGGGGAATAGAATGGAATTTCGTCGTGGTTGTACCAATTCATAGGATCACCCCCGTATGCGCGGGGAATAGTGACAGCACTAAACGAAAAGTCAGAAGTGACAGGGATCACCCCCGTATGCGCGGGGAATAGTCGCTGCTACTACCCAATCTGGTAAAACGATCAGGATCACCCCCGTATGCGCGGGGAATAGA

>CP032659|2|2|278336-278609|CRISPRCasFinder
AAAATCACCCCCGTATGCACGGGGAATAG	ACTAGCGTAGAAATTTCGGTTAGTCACATTGG
AGGATCACCCCCGTATGCACGGGGAATAG	AATGGAATTTCGTCGTGGTTGTACCAATTCAT
AGGATCACCCCCGTATGCGCGGGGAATAG	TGACAGCACTAAACGAAAAGTCAGAAGTGACA
GGGATCACCCCCGTATGCGCGGGGAATAG	TCGCTGCTACTACCCAATCTGGTAAAACGATC
AGGATCACCCCCGTATGCGCGGGGAATAGA

>CP032659|2|2|278336-278597|CRT
AAAATCACCCCCGTATGC	ACGGGGAATAGACTAGCGTAGAAATTTCGGTTAGTCACATTGG
AGGATCACCCCCGTATGC	ACGGGGAATAGAATGGAATTTCGTCGTGGTTGTACCAATTCAT
AGGATCACCCCCGTATGC	GCGGGGAATAGTGACAGCACTAAACGAAAAGTCAGAAGTGACA
GGGATCACCCCCGTATGC	GCGGGGAATAGTCGCTGCTACTACCCAATCTGGTAAAACGATC
AGGATCACCCCCGTATGC

>CP032659|2|2|278339-278608|PILER-CR
ATCACCCCCGTATGCACGGGGAATAGAC	TAGCGTAGAAATTTCGGTTAGTCACATTGGAGG
ATCACCCCCGTATGCACGGGGAATAGAA	TGGAATTTCGTCGTGGTTGTACCAATTCATAGG
ATCACCCCCGTATGCGCGGGGAATAGTG	ACAGCACTAAACGAAAAGTCAGAAGTGACAGGG
ATCACCCCCGTATGCGCGGGGAATAGTC	GCTGCTACTACCCAATCTGGTAAAACGATCAGG
ATCACCCCCGTATGCGCGGGGAATAG

Protein	Signature genes	Signature genes Name	Protein_function
CP032659.1\|AYG39820.1\|284567_285179_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
CP032659.1\|AYG39826.1\|290414_290945_+\|YqeG-family-HAD-IIIA-type-phosphatase	unknown	unknown	gnl\|CDD\|225090
CP032659.1\|AYG39811.1\|271794_273759_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
CP032659.1\|AYG39810.1\|270526_271462_+\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
CP032659.1\|AYG39814.1\|274754_275111_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
CP032659.1\|AYG39809.1\|268549_269065_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
CP032659.1\|AYG39817.1\|277894_278308_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
CP032659.1\|AYG39819.1\|282826_284578_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
CP032659.1\|AYG39821.1\|285178_286258_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP032659.1\|AYG39822.1\|286238_286964_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
CP032659.1\|AYG42591.1\|269086_270523_+\|helicase-DnaB	unknown	unknown	gnl\|CDD\|226138
CP032659.1\|AYG39815.1\|275353_276616_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
CP032659.1\|AYG39824.1\|287785_289099_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|236882
CP032659.1\|AYG39816.1\|276843_277593_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|376478
CP032659.1\|AYG39827.1\|290941_292078_+\|ribosome-biogenesis-GTPase-YqeH	unknown	unknown	gnl\|CDD\|237511
CP032659.1\|AYG39812.1\|273980_274502_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
CP032659.1\|AYG39813.1\|274523_274718_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
CP032659.1\|AYG39823.1\|286963_287632_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|378050
CP032659.1\|AYG39825.1\|289102_289585_-\|hypothetical-protein	unknown	unknown	unknown
CP032659.1\|AYG39818.1\|280074_282822_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031

Protein	Function_ID	Function_description	E-value
CP032659.1\|AYG39820.1\|284567_285179_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	9.91207e-24
CP032659.1\|AYG39826.1\|290414_290945_+\|YqeG-family-HAD-IIIA-type-phosphatase	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	2.45587e-66
CP032659.1\|AYG39811.1\|271794_273759_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
CP032659.1\|AYG39810.1\|270526_271462_+\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	3.11957e-169
CP032659.1\|AYG39814.1\|274754_275111_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	2.65787e-62
CP032659.1\|AYG39809.1\|268549_269065_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	9.6044e-88
CP032659.1\|AYG39817.1\|277894_278308_-\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	6.21665e-17
CP032659.1\|AYG39819.1\|282826_284578_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	6.28386e-85
CP032659.1\|AYG39821.1\|285178_286258_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.44702e-153
CP032659.1\|AYG39822.1\|286238_286964_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.65524e-45
CP032659.1\|AYG42591.1\|269086_270523_+\|helicase-DnaB	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	1.45112e-40
CP032659.1\|AYG39815.1\|275353_276616_+\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.04877e-55
CP032659.1\|AYG39824.1\|287785_289099_-\|glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	5.37136e-103
CP032659.1\|AYG39816.1\|276843_277593_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|376478	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, maleate isomerases EC:5.2.1.1, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase EC:4.1.1.76.	1.10088e-62
CP032659.1\|AYG39827.1\|290941_292078_+\|ribosome-biogenesis-GTPase-YqeH	gnl\|CDD\|237511	PRK13796, PRK13796, GTPase YqeH; Provisional.	0
CP032659.1\|AYG39812.1\|273980_274502_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	8.45395e-91
CP032659.1\|AYG39813.1\|274523_274718_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.32915e-16
CP032659.1\|AYG39823.1\|286963_287632_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.7529e-71
CP032659.1\|AYG39818.1\|280074_282822_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.13065e-80

>CP032659.1|AYG39817.1|277894_278308_-|NUDIX-hydrolase
MVEIIAHVLIPTNRGFLILQRTRKEYGNKNVYPGYWDIPGGLAINNEIPRETAIRECMEETGLKVKISRIIWEDSVLDKDKNHVFTRLVYLAHEISADQKIYLNREEHSEFVFVNSRQILSKRKVIPYLEKVLLQFL
>CP032659.1|AYG39816.1|276843_277593_+|aspartate/glutamate-racemase-family-protein
MEQCFGIIGGMGTMATESFVHAVNQLTNAHCDQDYLNYVVLNDAQIPDRTAYILDHHRASPLPALKSDVRLLNRLAVQFIVMTCNTAHYFVPELTKISRVPILNMPMVAVKAASQQHSDLPLRIGILATTGTIQSHLYQDIIHANGHVSVVPSEAEQVQLMDLIYHDIKQHSFVDQAKFHGLIAQLLNVEHCDAVILGCTELSVAQATNPFMSEKVIDAQQELAKTTVYRAQSVKTTLLWEQRTQSVNK
>CP032659.1|AYG39815.1|275353_276616_+|ISL3-family-transposase
MSQDHSTKVLLQIKDPNITDLVVQEATNGSLQVFAKLTYPVTVCARCGKRSMVKNGFKTVHIRIPRISERVTILNLKKQRFICKNCGKSSLTTTKLVKKHHQISENSLHAIDLSLTEDRTMVSIAAQYNVSTNTIIRRIKLLGQGTQPAFNGLPTMLCIDEFRSTGKQMSFIAVDAQTHDIITILPGRKNADIKDFFLNHYSKRQRDRVTRVVMDFNSQYQPAIRTLFPHAKLVADNFHLVQMALRSLNQTRVQLMKRFNPKSREYRLLKYYWRLYLKDYDSLEKRKPQWFAHLKDRMTQEQLVVAGLNLDQQFRQTYQAAHALVKSFQKRDYRSFEAALGNVENVSPQLMTNIKSFIKNRQLIKNMTTGRLSNGPIEGVNRKIKQIKRTAYGYKNWQNFIYRIQIEFKIKIEKKNPIRK
>CP032659.1|AYG39814.1|274754_275111_+|50S-ribosomal-protein-L20
MARVKGGTVTRKRRKRILKLAKGYRGAKHIQFKVAKDQVMKSYQYAFRDRRRRKSDFRRLWIARINAAARINDISYSQLMHGLKVANVDVNRKMLADLAVNDADAFKALVDTAKKALA
>CP032659.1|AYG39813.1|274523_274718_+|50S-ribosomal-protein-L35
MPKQKTNRAAAKRFKVTAKGKIKSANAFTSHRFHGKTKKQRRQLRGTAIIEKPMVKTYHKLLQK
>CP032659.1|AYG39812.1|273980_274502_+|translation-initiation-factor-IF-3
MTIAKDSMVNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYRFEQQKKEREARKKQKVVSIKEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIRFKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVLAPKTDK
>CP032659.1|AYG39811.1|271794_273759_+|threonine--tRNA-ligase
MASINVKFPDGAVKQFDAGVTTEAIAKSISPSLAKRSVAGKFNDQIVDYRQPLTTDGSIEIIAADSEDGLNVLRQTAAQVLANAVKQLFPSIHFGSGEGNANGFFFDTDNPDEDGKQVSEDDLEAISDKMAAIIKQDLPIEREVLSKADALALVGDNPYQQDLVNERAAENDGQVVVYKQGDFVDLSDGAQLASTGKVKVFKLLSVAGAYWQGKSSNPMLQRIYGTAFLKQKDLDADLKRRQEARERDHRVIGNELDLFFVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYEDFDISDYRFRLSYRDPENTEKYFDDDAMWERSQKMLKSAMDDMGLDYFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLDFLLPERFDLKYVGADGEEHRPVMIHRGLVSTMERFVAYLTEMYKGAFPTWLAPKQVTIIPVNNGAHGAYAETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTESEAVDMFIGAITQEIKRYSRGASK
>CP032659.1|AYG39810.1|270526_271462_+|primosomal-protein-DnaI
MENISETLRTLMNRKNLNHRYEALMTTVYHDPDVRQFLAAHQDELSADALERSGAKLYEFCEEKRKLARHEPTQAPGYQPTLVMSNHLIDIAYQPTPQLQEQQAARALQQRVRSISMPKSIQTADLKSYDQDGDRATALVAALDFIDAYTQAPKRFHRGLYLYGSFGVGKTYLLGGMANELAARGFNTTLIHFPSFAVEMKRSISNNTSADKVDAIKRAPILMIDDIGADASSTWIRDDVLGVILEYRMQEELPTCFSSNFSMQELQDGYLTISQKGDEEPVKAQRIMQRVRYLSSEIEMVGRNRRLNPDG
>CP032659.1|AYG42591.1|269086_270523_+|helicase-DnaB
MPNEEPLTPKSGLVVPQAPALSAAQQAVLAELYLPLIGPLAYSLYAALRSLQSSENELSNRRSHAELLGILNADLPTVLAARRKLEATGLLRSYYQQDELGTLYIYRLQAPQLALQFFADDLLSVLLLDTVGELRYQQLASDFATQPVDLTAAKDVTANILEVFHVDGHKVTTTPRPVQQVRAQLAANEPAEDQSPVLSDDDFDWQLLGQILKQNYVDLKQVASSRQLIVTESRVYGISEIEMAKLISEVASLTTGQFDENQLKLLIARRYERPTTPTRTTTNEATTDQSTKPTTTAANSSKATRQPASTAQLSKAEQQLVDVAKQAAPYDFLAAVKAEKHGFVTSGENRLVHDLISRGVLPNSVINIVIYYLLQNRELAALNRSLIETVANDWQQHGVNTPEAALAYLKQRQRPKTSAPRRKSNARPTRKEVMPKWAQKQQAGEAQPDKPNKQLSEEQRQQLAARLAKLETNSEKED
>CP032659.1|AYG39809.1|268549_269065_+|transcriptional-repressor-NrdR
MQCPHCHHNGSRVVDSRPTDDGRVIRRRRECENCGFRFTTFERVEATPLLVIKKNGAREEFNREKVLRGIIRSAEKRPVSMETMTGVVDDVENKVRSLGENEISSQVIGEYVMEQLADIDEISYIRFASVYRQFKDMHVFLNELQDMMERDKVKLAKPSAKTEHAPKRKKD
>CP032659.1|AYG39818.1|280074_282822_+|CRISPR-associated-helicase-Cas3'
MAEFSRLAQSLWAKKRSSDGQRLWLPLIVHLKDCENTINWLFNHWLSDGQRQQLAAATSEEDVQKLVKFLGFIHDCGKATPAFQMKPAYNGDNQLDQILIEQLMRSGFKDLDVLNLSSAQRSPHALAGEAILTAYGVDPTIGAIIGGHHGKPESEPPVHQIRDYTANYFQSDNRPELQVEWQQVQRELVEYGLHSAGYQRAAEIPAINQPEAVILTGLLIMADWLASSECFDGDASKSLFPLVNTAQSVETIDVQTRFQRAIMTWRLDDEWVPAPLSQDQDPYQLRWGFHARPVQAAITRALGATTDPGMAIIEAPMGLGKTEIALIAVEQLARMTGRDGVYMGLPTQATTNAMFARVNDWLASVADEQEAHLSIKLMHGKSQFNRTYTALPNASNVNSTDEHHGAVTLNSWFSGKKSILTKFTVGTIDNLLLMGLKQKHLFLRHLGFSGKVVVIDEVHAYDAYMNAYLLRAIEWLGAYHVPIVILSATLPKIKRNQLLKAYLKGKYGRKFHQLLKLAPAGWEDTQAYPLLSVLDGPEIKQVTHFEGQSDQAPLTLAVERTNQDDQDLVATLLAQLDAGGVAGIIVNTVKRAQALAALIPADVPLMVLHSAFLAPDRAQQEEKLQAAIGKHGQRPAKLVVIGTQVLEQSLDIDFDVLYTDIAPIDLILQRAGRLHRHQTITRPKQFRQPQLKVMGINDFGDYGDGNEAVYGKYLLMKTDHFLPDKIQLPGDISTLVQRVYDAATDAEVPEIEPAAEKFETDLKVEQQKAGVFQVKAPQLKQGKTLHGWLDRDHTDVVNDQQASAAVRDIQETLEVILVQHTTDGDFLLDGRKLAEVASAAIAQQTLRIPAAITPNITAAITELEDLTRPYHLRWQDDVWLNGALVLPLDQNLTATFNGWQVSYSPQLGLSYSKEE
>CP032659.1|AYG39819.1|282826_284578_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MEKTFNLTTEPWIEVIDAQTNQQVSVSLIELFQNAQNYRQLAGDMRTQDLAVLRLLLAILTTVYTRYDADNQGYEWLTIADDFKVVSVDEDYDSDEIHDDLKKTWQDLYEGGQFTTIVTDYLKQYANRFDLFGDQPFYQVTASEYDAVVPENKSVAHGQKTGKPTGLVAIRQMNRRISESGNSVALFAPKVNETKNDLTHAELARWLIMYQNYTGVTDKTKIKSDETFSNGAGWLYQLNPVYANGRSLFEILMLNLLLVPMDEDVRYPVQRPVWEYTGLADYLKEHRRKLVPDNLAALYTTWSRLLHIEWDDQQRPLIFTAGIPMFDNVGALIEPMTLWRQDKKTSQFKPAVASIKYTGKAMWRNFGQYVNVNRRDDIHEAGIVTWLHYLKAQGLVPDDQQLWLASTALLSDGNMSSQMPATEVYDDMQIQADVLFDESSADYWPVRIEDAINITQKIGDGYYRFAATIGQIRNIDAKQFGQRHSAQFYAELNRPFKAWLASLTGNDDREAKINEWKQTLQTITLQAANTMMATSSSRDVRGIVDHDKNNVPRQINVFTANNQLRRLVFTQLKGKQVKVADEK
>CP032659.1|AYG39820.1|284567_285179_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MKNKIQKVTASIIRQLYNHGNLNKGVLASVRHATVLNSPQAQALWPIMMAELDDEMLSRDGHPTAAEVAVYTAVRFYAIQQQGSEVLVYGPANSQSDDTEKGIPLFQALAKLRRNEETRVALDRRMQPLLATTNVASAINALTHLVSMLKAANQQQKIDYACLAQELYWLQQSYERASQVRLQWGQQYYRPQDATEKPEGKKN
>CP032659.1|AYG39821.1|285178_286258_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTNNLYLDIHVIQTVPSSNINRDDTGAPKTALYGGVSRSRVSSQSWKRAVRQSFQDDTVTVGYRTKKAAQLLKDALQKLTPDLSDDDAWEQVNAVFKAASVKLDKNEETSALLMLSPGQIDQLAQYIKDNADGELDKKAIKAVLKGNQSIDLALFGRMVADNPELNVEAAAQVAHAISTHEVVPEFDYFTALDDLQPDDTTGAAMLGTLEFNSATLYRYANINMNDLIANLGEAAAVDGAREFVKAFALSMPTGKQNTFANKTLPSYVMLTLRTDTPVNLVSGFEDPVTSKQGYVKQSIEKLNAAYKQTLQFVEKPVLNVALGADASAIAVPAENLTDLLGQVTTELTKVVKDENGND
>CP032659.1|AYG39822.1|286238_286964_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTVTIRLTAPLQSYGDEANFDRRTSYDYPSKSAIVGLIAAALGYRRTDSRIQTLNQLDYAVRIDQPAEPLTDFQIVEWKRGKRKLTYRDYLQDAVFLAAVGSEDDALIDRIDWALHHPRFQLSLGRRANVPAGPIMTEIALGSNPAQVLQFLSWHASRFYMKKTKSATFVAELIADAALLPNHRSSMAKDNVITFDQRERQYGFRAVAIDRVPLENPYHPDRTAETDHDMMTFLWKEDQR
>CP032659.1|AYG39823.1|286963_287632_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDRDNRYKTRDLTHLGAYHNWVEQSFPEEIENNQRGRHLWRIDRLNGKDYLLVLSADRPRLEQLEQYGVEETALTKSYDTWLDHIEAGMVLRFRLTANPTHSIIEPNHPKGRVVPHVTIEQQKQWLADRALRAGFELVARADTAADETEKLAFDVVSHDWPTLHRRKGRSVRLSRVTFEGVLRVQDADTFKQTLTKGLGREKAFGMGLMTVIPTE
>CP032659.1|AYG39824.1|287785_289099_-|glycosyltransferase
MEIMQTLKPFESIWNFVLLLLVSYPILGAFAWFIGVLCYQLVYRHRHKDDVEFKKLAPAEQPFITIMIPAHNEEVMIEHTINYLMNNLNYQNYEVLVTDDGSTDETPAILERLQTIYDNLRVITIKKNQGKAHAFNVGVSFARGEFILSNDADSIPEPDALWKYMSYFMGEEHANTAAVTANMDVQNRSTIIAKSQTVEFSSIVGVIKRSQVSALGNMYAYSGANTMYRRDALIDVGLFRQDRATEDISIAWDQQLNGWTTVFSPDILFYMNVPENLDALYHQRKRWAKGGTEVLLTNFKRVASHPGKYLKQWAFITDQTLSIIWSLFFFVSTLIFLISLVTFFFTGNYERVYHMFCMAFIFVTFEMFAGVLQLLSALIVDDRGRKFKYLIFMPLYMLIYWQVNALALVTTLIPAVKTILGYGSGTWVSPVRKHHTE
>CP032659.1|AYG39825.1|289102_289585_-|hypothetical-protein
MEKKDVMKQYVTDKYFSKGHWWTKIWQTLVAIVAWICVAVPVYWTISSTLLANNPRFIHAWKYEEGKTLFYFFDRFFIFAFILIAIIVIISTIHNNHRVKQHISKERQYDEDRLDVRKRRLNNFYTQRFGQATFRQHVKHYTVDPEQNLDVNEIHKLYED
>CP032659.1|AYG39826.1|290414_290945_+|YqeG-family-HAD-IIIA-type-phosphatase
MINQFKPTWMIPAIYNVTPAQLRAQGIKAVFTDLDNTLIAWDNPDGTPELKKWLHALQDAGIPLVVVSNNSEARIAKALEQLDLPFVSRSLKPLPIGLNKARHDLGLHKNEVVMVGDQYITDMWSAHLAGVPSILVKPIVTTDAWNTRINRFFERFIKLRLAHVYPEMHFQEDLNK
>CP032659.1|AYG39827.1|290941_292078_+|ribosome-biogenesis-GTPase-YqeH
MSETSEETLYCIGCGAAIQTTDPKAAGYTPNSALQKSLASDAQDLYCQRCFRLRHYNEIVPVGLTDDDFRRLLATIRDANALVVYVVDIFDLNGSIIPGLQRFVGDNPVLLVGNKEDVLPRQLRRTKLREWMNQQVRAQGIKPVDVALTSAKKGHAIDDLLAMIEKYRRGRDVYVVGVTNVGKSTLINRIIANNTGLKDLITTSRFPGTTLDKIEIPLDDGHKMVDTPGIIHPEQMAHVLSGDDLKLVSPQKEIRPKGFQLGNGQTLFLGGVARLDIVDTLKPTGTVYVDNNLTLHRTRTENADNFYTKHVGELITPPTGAAVADFPPLVRHEFKVTETSDIVFEGLGWVTVAADTRVAGWAPKGVAVLTRPAMINKR

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Crispr_ID: CP032659_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032659_3

278745-279544

TypeI-E

Consensus_repeat	Method
AGGATCACCCCCGCATACACGGGGAACAG	CRISPRCasFinder
GGATCACCCCCGCATACACGGGGAACAG	CRT
GGATCACCCCCGCATACACGGGGAACAG	PILER-CR

12 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of CP032659_3

>merge|CP032659|3|278745-279544|CRISPRCasFinder,CRT,PILER-CR
AGGATCACCCCCGCACACGCGGGGAACAGAGTACGTTGTCCACTTTCAATGTATTCGGCATAGGATCACCCCCGCATACGCGGGGAACAGTACGAGAAGGACATCACCCCCGCATACGCGGGGAACAGGAATGCTAGCCCGGCTAGTTTTAAGCTGGGCCGGGATCACCCCCGCATACGCGGGGAACAGCTATCAAACTCATCTCATAGCCTCTCAATCATCAGGATCACCCCCGCATACGCGGGGAACAGGCCCCGATGTCATCGAGGGCGGCGCCCCCAGCGGGATCACCCCCGCATACACGGGGAACAGCCCTCATCTGTTCCGTCTTCGTTTTCGCCATCGGGATCACCCCCGCATACACGGGGAACAGCTTACCAATTAGCCCACAGCGATTACCGTATCAGGATCACCCCCGCATACACGGGGAACAGCTTACCAATTAGCCCACAGCGATTACCGTATCAGGATCACCCCCGCATACACGGGGAACAGTCGTGACGGAGTTTGACTTCGATGGATAACGAAGGATCACCCCCGCATACACGGGGAACAGTCGTGACGGAGTTTGACTTCGATGGATAACGAAGGATCACCCCCGCATACACGGGGAACAGTCGTGACGGAGTTTGACTTCGATGGATAACGAAGGATCACCCCCGCATACACGGGGAACAGGCTATAACGCTTACTTGCCAGAACCGGTTATTAGGATCACCCCCGCATACACGGGGAACAGTACAATTAATTCAGTTGATTTAATTGATGGATAGGATCACCCCCGCATACACGGGGAACAG

>CP032659|3|3|278745-279544|CRISPRCasFinder
AGGATCACCCCCGCACACGCGGGGAACAG	AGTACGTTGTCCACTTTCAATGTATTCGGCAT
AGGATCACCCCCGCATACGCGGGGAACAG	TACGAGAAGGACATCACCCCCGCATACGCGGGGAACAGGAATGCTAGCCCGGCTAGTTTTAAGCTGGGCC
GGGATCACCCCCGCATACGCGGGGAACAG	CTATCAAACTCATCTCATAGCCTCTCAATCATC
AGGATCACCCCCGCATACGCGGGGAACAG	GCCCCGATGTCATCGAGGGCGGCGCCCCCAGC
GGGATCACCCCCGCATACACGGGGAACAG	CCCTCATCTGTTCCGTCTTCGTTTTCGCCATC
GGGATCACCCCCGCATACACGGGGAACAG	CTTACCAATTAGCCCACAGCGATTACCGTATC
AGGATCACCCCCGCATACACGGGGAACAG	CTTACCAATTAGCCCACAGCGATTACCGTATC
AGGATCACCCCCGCATACACGGGGAACAG	TCGTGACGGAGTTTGACTTCGATGGATAACGA
AGGATCACCCCCGCATACACGGGGAACAG	TCGTGACGGAGTTTGACTTCGATGGATAACGA
AGGATCACCCCCGCATACACGGGGAACAG	TCGTGACGGAGTTTGACTTCGATGGATAACGA
AGGATCACCCCCGCATACACGGGGAACAG	GCTATAACGCTTACTTGCCAGAACCGGTTATT
AGGATCACCCCCGCATACACGGGGAACAG	TACAATTAATTCAGTTGATTTAATTGATGGAT
AGGATCACCCCCGCATACACGGGGAACAG

>CP032659|3|3|278845-279544|CRT
ACATCACCCCCGCATACGCGGGGAACAG	GAATGCTAGCCCGGCTAGTTTTAAGCTGGGCCG
GGATCACCCCCGCATACGCGGGGAACAG	CTATCAAACTCATCTCATAGCCTCTCAATCATCA
GGATCACCCCCGCATACGCGGGGAACAG	GCCCCGATGTCATCGAGGGCGGCGCCCCCAGCG
GGATCACCCCCGCATACACGGGGAACAG	CCCTCATCTGTTCCGTCTTCGTTTTCGCCATCG
GGATCACCCCCGCATACACGGGGAACAG	CTTACCAATTAGCCCACAGCGATTACCGTATCA
GGATCACCCCCGCATACACGGGGAACAG	CTTACCAATTAGCCCACAGCGATTACCGTATCA
GGATCACCCCCGCATACACGGGGAACAG	TCGTGACGGAGTTTGACTTCGATGGATAACGAA
GGATCACCCCCGCATACACGGGGAACAG	TCGTGACGGAGTTTGACTTCGATGGATAACGAA
GGATCACCCCCGCATACACGGGGAACAG	TCGTGACGGAGTTTGACTTCGATGGATAACGAA
GGATCACCCCCGCATACACGGGGAACAG	GCTATAACGCTTACTTGCCAGAACCGGTTATTA
GGATCACCCCCGCATACACGGGGAACAG	TACAATTAATTCAGTTGATTTAATTGATGGATA
GGATCACCCCCGCATACACGGGGAACAG

>CP032659|3|3|278906-279544|PILER-CR
GGATCACCCCCGCATACGCGGGGAACAG	CTATCAAACTCATCTCATAGCCTCTCAATCATCA
GGATCACCCCCGCATACGCGGGGAACAG	GCCCCGATGTCATCGAGGGCGGCGCCCCCAGCG
GGATCACCCCCGCATACACGGGGAACAG	CCCTCATCTGTTCCGTCTTCGTTTTCGCCATCG
GGATCACCCCCGCATACACGGGGAACAG	CTTACCAATTAGCCCACAGCGATTACCGTATCA
GGATCACCCCCGCATACACGGGGAACAG	CTTACCAATTAGCCCACAGCGATTACCGTATCA
GGATCACCCCCGCATACACGGGGAACAG	TCGTGACGGAGTTTGACTTCGATGGATAACGAA
GGATCACCCCCGCATACACGGGGAACAG	TCGTGACGGAGTTTGACTTCGATGGATAACGAA
GGATCACCCCCGCATACACGGGGAACAG	TCGTGACGGAGTTTGACTTCGATGGATAACGAA
GGATCACCCCCGCATACACGGGGAACAG	GCTATAACGCTTACTTGCCAGAACCGGTTATTA
GGATCACCCCCGCATACACGGGGAACAG	TACAATTAATTCAGTTGATTTAATTGATGGATA
GGATCACCCCCGCATACACGGGGAACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP032659.1\|AYG39820.1\|284567_285179_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
CP032659.1\|AYG39826.1\|290414_290945_+\|YqeG-family-HAD-IIIA-type-phosphatase	unknown	unknown	gnl\|CDD\|225090
CP032659.1\|AYG39811.1\|271794_273759_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
CP032659.1\|AYG39810.1\|270526_271462_+\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
CP032659.1\|AYG39814.1\|274754_275111_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
CP032659.1\|AYG39809.1\|268549_269065_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
CP032659.1\|AYG39817.1\|277894_278308_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
CP032659.1\|AYG39819.1\|282826_284578_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
CP032659.1\|AYG39821.1\|285178_286258_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP032659.1\|AYG39822.1\|286238_286964_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
CP032659.1\|AYG42591.1\|269086_270523_+\|helicase-DnaB	unknown	unknown	gnl\|CDD\|226138
CP032659.1\|AYG39815.1\|275353_276616_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
CP032659.1\|AYG39824.1\|287785_289099_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|236882
CP032659.1\|AYG39816.1\|276843_277593_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|376478
CP032659.1\|AYG39827.1\|290941_292078_+\|ribosome-biogenesis-GTPase-YqeH	unknown	unknown	gnl\|CDD\|237511
CP032659.1\|AYG39812.1\|273980_274502_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
CP032659.1\|AYG39813.1\|274523_274718_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
CP032659.1\|AYG39823.1\|286963_287632_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|378050
CP032659.1\|AYG39825.1\|289102_289585_-\|hypothetical-protein	unknown	unknown	unknown
CP032659.1\|AYG39818.1\|280074_282822_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031

Protein	Function_ID	Function_description	E-value
CP032659.1\|AYG39820.1\|284567_285179_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	9.91207e-24
CP032659.1\|AYG39826.1\|290414_290945_+\|YqeG-family-HAD-IIIA-type-phosphatase	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	2.45587e-66
CP032659.1\|AYG39811.1\|271794_273759_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
CP032659.1\|AYG39810.1\|270526_271462_+\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	3.11957e-169
CP032659.1\|AYG39814.1\|274754_275111_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	2.65787e-62
CP032659.1\|AYG39809.1\|268549_269065_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	9.6044e-88
CP032659.1\|AYG39817.1\|277894_278308_-\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	6.21665e-17
CP032659.1\|AYG39819.1\|282826_284578_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	6.28386e-85
CP032659.1\|AYG39821.1\|285178_286258_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.44702e-153
CP032659.1\|AYG39822.1\|286238_286964_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.65524e-45
CP032659.1\|AYG42591.1\|269086_270523_+\|helicase-DnaB	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	1.45112e-40
CP032659.1\|AYG39815.1\|275353_276616_+\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.04877e-55
CP032659.1\|AYG39824.1\|287785_289099_-\|glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	5.37136e-103
CP032659.1\|AYG39816.1\|276843_277593_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|376478	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, maleate isomerases EC:5.2.1.1, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase EC:4.1.1.76.	1.10088e-62
CP032659.1\|AYG39827.1\|290941_292078_+\|ribosome-biogenesis-GTPase-YqeH	gnl\|CDD\|237511	PRK13796, PRK13796, GTPase YqeH; Provisional.	0
CP032659.1\|AYG39812.1\|273980_274502_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	8.45395e-91
CP032659.1\|AYG39813.1\|274523_274718_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.32915e-16
CP032659.1\|AYG39823.1\|286963_287632_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.7529e-71
CP032659.1\|AYG39818.1\|280074_282822_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.13065e-80

>CP032659.1|AYG39817.1|277894_278308_-|NUDIX-hydrolase
MVEIIAHVLIPTNRGFLILQRTRKEYGNKNVYPGYWDIPGGLAINNEIPRETAIRECMEETGLKVKISRIIWEDSVLDKDKNHVFTRLVYLAHEISADQKIYLNREEHSEFVFVNSRQILSKRKVIPYLEKVLLQFL
>CP032659.1|AYG39816.1|276843_277593_+|aspartate/glutamate-racemase-family-protein
MEQCFGIIGGMGTMATESFVHAVNQLTNAHCDQDYLNYVVLNDAQIPDRTAYILDHHRASPLPALKSDVRLLNRLAVQFIVMTCNTAHYFVPELTKISRVPILNMPMVAVKAASQQHSDLPLRIGILATTGTIQSHLYQDIIHANGHVSVVPSEAEQVQLMDLIYHDIKQHSFVDQAKFHGLIAQLLNVEHCDAVILGCTELSVAQATNPFMSEKVIDAQQELAKTTVYRAQSVKTTLLWEQRTQSVNK
>CP032659.1|AYG39815.1|275353_276616_+|ISL3-family-transposase
MSQDHSTKVLLQIKDPNITDLVVQEATNGSLQVFAKLTYPVTVCARCGKRSMVKNGFKTVHIRIPRISERVTILNLKKQRFICKNCGKSSLTTTKLVKKHHQISENSLHAIDLSLTEDRTMVSIAAQYNVSTNTIIRRIKLLGQGTQPAFNGLPTMLCIDEFRSTGKQMSFIAVDAQTHDIITILPGRKNADIKDFFLNHYSKRQRDRVTRVVMDFNSQYQPAIRTLFPHAKLVADNFHLVQMALRSLNQTRVQLMKRFNPKSREYRLLKYYWRLYLKDYDSLEKRKPQWFAHLKDRMTQEQLVVAGLNLDQQFRQTYQAAHALVKSFQKRDYRSFEAALGNVENVSPQLMTNIKSFIKNRQLIKNMTTGRLSNGPIEGVNRKIKQIKRTAYGYKNWQNFIYRIQIEFKIKIEKKNPIRK
>CP032659.1|AYG39814.1|274754_275111_+|50S-ribosomal-protein-L20
MARVKGGTVTRKRRKRILKLAKGYRGAKHIQFKVAKDQVMKSYQYAFRDRRRRKSDFRRLWIARINAAARINDISYSQLMHGLKVANVDVNRKMLADLAVNDADAFKALVDTAKKALA
>CP032659.1|AYG39813.1|274523_274718_+|50S-ribosomal-protein-L35
MPKQKTNRAAAKRFKVTAKGKIKSANAFTSHRFHGKTKKQRRQLRGTAIIEKPMVKTYHKLLQK
>CP032659.1|AYG39812.1|273980_274502_+|translation-initiation-factor-IF-3
MTIAKDSMVNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYRFEQQKKEREARKKQKVVSIKEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIRFKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVLAPKTDK
>CP032659.1|AYG39811.1|271794_273759_+|threonine--tRNA-ligase
MASINVKFPDGAVKQFDAGVTTEAIAKSISPSLAKRSVAGKFNDQIVDYRQPLTTDGSIEIIAADSEDGLNVLRQTAAQVLANAVKQLFPSIHFGSGEGNANGFFFDTDNPDEDGKQVSEDDLEAISDKMAAIIKQDLPIEREVLSKADALALVGDNPYQQDLVNERAAENDGQVVVYKQGDFVDLSDGAQLASTGKVKVFKLLSVAGAYWQGKSSNPMLQRIYGTAFLKQKDLDADLKRRQEARERDHRVIGNELDLFFVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYEDFDISDYRFRLSYRDPENTEKYFDDDAMWERSQKMLKSAMDDMGLDYFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLDFLLPERFDLKYVGADGEEHRPVMIHRGLVSTMERFVAYLTEMYKGAFPTWLAPKQVTIIPVNNGAHGAYAETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTESEAVDMFIGAITQEIKRYSRGASK
>CP032659.1|AYG39810.1|270526_271462_+|primosomal-protein-DnaI
MENISETLRTLMNRKNLNHRYEALMTTVYHDPDVRQFLAAHQDELSADALERSGAKLYEFCEEKRKLARHEPTQAPGYQPTLVMSNHLIDIAYQPTPQLQEQQAARALQQRVRSISMPKSIQTADLKSYDQDGDRATALVAALDFIDAYTQAPKRFHRGLYLYGSFGVGKTYLLGGMANELAARGFNTTLIHFPSFAVEMKRSISNNTSADKVDAIKRAPILMIDDIGADASSTWIRDDVLGVILEYRMQEELPTCFSSNFSMQELQDGYLTISQKGDEEPVKAQRIMQRVRYLSSEIEMVGRNRRLNPDG
>CP032659.1|AYG42591.1|269086_270523_+|helicase-DnaB
MPNEEPLTPKSGLVVPQAPALSAAQQAVLAELYLPLIGPLAYSLYAALRSLQSSENELSNRRSHAELLGILNADLPTVLAARRKLEATGLLRSYYQQDELGTLYIYRLQAPQLALQFFADDLLSVLLLDTVGELRYQQLASDFATQPVDLTAAKDVTANILEVFHVDGHKVTTTPRPVQQVRAQLAANEPAEDQSPVLSDDDFDWQLLGQILKQNYVDLKQVASSRQLIVTESRVYGISEIEMAKLISEVASLTTGQFDENQLKLLIARRYERPTTPTRTTTNEATTDQSTKPTTTAANSSKATRQPASTAQLSKAEQQLVDVAKQAAPYDFLAAVKAEKHGFVTSGENRLVHDLISRGVLPNSVINIVIYYLLQNRELAALNRSLIETVANDWQQHGVNTPEAALAYLKQRQRPKTSAPRRKSNARPTRKEVMPKWAQKQQAGEAQPDKPNKQLSEEQRQQLAARLAKLETNSEKED
>CP032659.1|AYG39809.1|268549_269065_+|transcriptional-repressor-NrdR
MQCPHCHHNGSRVVDSRPTDDGRVIRRRRECENCGFRFTTFERVEATPLLVIKKNGAREEFNREKVLRGIIRSAEKRPVSMETMTGVVDDVENKVRSLGENEISSQVIGEYVMEQLADIDEISYIRFASVYRQFKDMHVFLNELQDMMERDKVKLAKPSAKTEHAPKRKKD
>CP032659.1|AYG39818.1|280074_282822_+|CRISPR-associated-helicase-Cas3'
MAEFSRLAQSLWAKKRSSDGQRLWLPLIVHLKDCENTINWLFNHWLSDGQRQQLAAATSEEDVQKLVKFLGFIHDCGKATPAFQMKPAYNGDNQLDQILIEQLMRSGFKDLDVLNLSSAQRSPHALAGEAILTAYGVDPTIGAIIGGHHGKPESEPPVHQIRDYTANYFQSDNRPELQVEWQQVQRELVEYGLHSAGYQRAAEIPAINQPEAVILTGLLIMADWLASSECFDGDASKSLFPLVNTAQSVETIDVQTRFQRAIMTWRLDDEWVPAPLSQDQDPYQLRWGFHARPVQAAITRALGATTDPGMAIIEAPMGLGKTEIALIAVEQLARMTGRDGVYMGLPTQATTNAMFARVNDWLASVADEQEAHLSIKLMHGKSQFNRTYTALPNASNVNSTDEHHGAVTLNSWFSGKKSILTKFTVGTIDNLLLMGLKQKHLFLRHLGFSGKVVVIDEVHAYDAYMNAYLLRAIEWLGAYHVPIVILSATLPKIKRNQLLKAYLKGKYGRKFHQLLKLAPAGWEDTQAYPLLSVLDGPEIKQVTHFEGQSDQAPLTLAVERTNQDDQDLVATLLAQLDAGGVAGIIVNTVKRAQALAALIPADVPLMVLHSAFLAPDRAQQEEKLQAAIGKHGQRPAKLVVIGTQVLEQSLDIDFDVLYTDIAPIDLILQRAGRLHRHQTITRPKQFRQPQLKVMGINDFGDYGDGNEAVYGKYLLMKTDHFLPDKIQLPGDISTLVQRVYDAATDAEVPEIEPAAEKFETDLKVEQQKAGVFQVKAPQLKQGKTLHGWLDRDHTDVVNDQQASAAVRDIQETLEVILVQHTTDGDFLLDGRKLAEVASAAIAQQTLRIPAAITPNITAAITELEDLTRPYHLRWQDDVWLNGALVLPLDQNLTATFNGWQVSYSPQLGLSYSKEE
>CP032659.1|AYG39819.1|282826_284578_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MEKTFNLTTEPWIEVIDAQTNQQVSVSLIELFQNAQNYRQLAGDMRTQDLAVLRLLLAILTTVYTRYDADNQGYEWLTIADDFKVVSVDEDYDSDEIHDDLKKTWQDLYEGGQFTTIVTDYLKQYANRFDLFGDQPFYQVTASEYDAVVPENKSVAHGQKTGKPTGLVAIRQMNRRISESGNSVALFAPKVNETKNDLTHAELARWLIMYQNYTGVTDKTKIKSDETFSNGAGWLYQLNPVYANGRSLFEILMLNLLLVPMDEDVRYPVQRPVWEYTGLADYLKEHRRKLVPDNLAALYTTWSRLLHIEWDDQQRPLIFTAGIPMFDNVGALIEPMTLWRQDKKTSQFKPAVASIKYTGKAMWRNFGQYVNVNRRDDIHEAGIVTWLHYLKAQGLVPDDQQLWLASTALLSDGNMSSQMPATEVYDDMQIQADVLFDESSADYWPVRIEDAINITQKIGDGYYRFAATIGQIRNIDAKQFGQRHSAQFYAELNRPFKAWLASLTGNDDREAKINEWKQTLQTITLQAANTMMATSSSRDVRGIVDHDKNNVPRQINVFTANNQLRRLVFTQLKGKQVKVADEK
>CP032659.1|AYG39820.1|284567_285179_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MKNKIQKVTASIIRQLYNHGNLNKGVLASVRHATVLNSPQAQALWPIMMAELDDEMLSRDGHPTAAEVAVYTAVRFYAIQQQGSEVLVYGPANSQSDDTEKGIPLFQALAKLRRNEETRVALDRRMQPLLATTNVASAINALTHLVSMLKAANQQQKIDYACLAQELYWLQQSYERASQVRLQWGQQYYRPQDATEKPEGKKN
>CP032659.1|AYG39821.1|285178_286258_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTNNLYLDIHVIQTVPSSNINRDDTGAPKTALYGGVSRSRVSSQSWKRAVRQSFQDDTVTVGYRTKKAAQLLKDALQKLTPDLSDDDAWEQVNAVFKAASVKLDKNEETSALLMLSPGQIDQLAQYIKDNADGELDKKAIKAVLKGNQSIDLALFGRMVADNPELNVEAAAQVAHAISTHEVVPEFDYFTALDDLQPDDTTGAAMLGTLEFNSATLYRYANINMNDLIANLGEAAAVDGAREFVKAFALSMPTGKQNTFANKTLPSYVMLTLRTDTPVNLVSGFEDPVTSKQGYVKQSIEKLNAAYKQTLQFVEKPVLNVALGADASAIAVPAENLTDLLGQVTTELTKVVKDENGND
>CP032659.1|AYG39822.1|286238_286964_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTVTIRLTAPLQSYGDEANFDRRTSYDYPSKSAIVGLIAAALGYRRTDSRIQTLNQLDYAVRIDQPAEPLTDFQIVEWKRGKRKLTYRDYLQDAVFLAAVGSEDDALIDRIDWALHHPRFQLSLGRRANVPAGPIMTEIALGSNPAQVLQFLSWHASRFYMKKTKSATFVAELIADAALLPNHRSSMAKDNVITFDQRERQYGFRAVAIDRVPLENPYHPDRTAETDHDMMTFLWKEDQR
>CP032659.1|AYG39823.1|286963_287632_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDRDNRYKTRDLTHLGAYHNWVEQSFPEEIENNQRGRHLWRIDRLNGKDYLLVLSADRPRLEQLEQYGVEETALTKSYDTWLDHIEAGMVLRFRLTANPTHSIIEPNHPKGRVVPHVTIEQQKQWLADRALRAGFELVARADTAADETEKLAFDVVSHDWPTLHRRKGRSVRLSRVTFEGVLRVQDADTFKQTLTKGLGREKAFGMGLMTVIPTE
>CP032659.1|AYG39824.1|287785_289099_-|glycosyltransferase
MEIMQTLKPFESIWNFVLLLLVSYPILGAFAWFIGVLCYQLVYRHRHKDDVEFKKLAPAEQPFITIMIPAHNEEVMIEHTINYLMNNLNYQNYEVLVTDDGSTDETPAILERLQTIYDNLRVITIKKNQGKAHAFNVGVSFARGEFILSNDADSIPEPDALWKYMSYFMGEEHANTAAVTANMDVQNRSTIIAKSQTVEFSSIVGVIKRSQVSALGNMYAYSGANTMYRRDALIDVGLFRQDRATEDISIAWDQQLNGWTTVFSPDILFYMNVPENLDALYHQRKRWAKGGTEVLLTNFKRVASHPGKYLKQWAFITDQTLSIIWSLFFFVSTLIFLISLVTFFFTGNYERVYHMFCMAFIFVTFEMFAGVLQLLSALIVDDRGRKFKYLIFMPLYMLIYWQVNALALVTTLIPAVKTILGYGSGTWVSPVRKHHTE
>CP032659.1|AYG39825.1|289102_289585_-|hypothetical-protein
MEKKDVMKQYVTDKYFSKGHWWTKIWQTLVAIVAWICVAVPVYWTISSTLLANNPRFIHAWKYEEGKTLFYFFDRFFIFAFILIAIIVIISTIHNNHRVKQHISKERQYDEDRLDVRKRRLNNFYTQRFGQATFRQHVKHYTVDPEQNLDVNEIHKLYED
>CP032659.1|AYG39826.1|290414_290945_+|YqeG-family-HAD-IIIA-type-phosphatase
MINQFKPTWMIPAIYNVTPAQLRAQGIKAVFTDLDNTLIAWDNPDGTPELKKWLHALQDAGIPLVVVSNNSEARIAKALEQLDLPFVSRSLKPLPIGLNKARHDLGLHKNEVVMVGDQYITDMWSAHLAGVPSILVKPIVTTDAWNTRINRFFERFIKLRLAHVYPEMHFQEDLNK
>CP032659.1|AYG39827.1|290941_292078_+|ribosome-biogenesis-GTPase-YqeH
MSETSEETLYCIGCGAAIQTTDPKAAGYTPNSALQKSLASDAQDLYCQRCFRLRHYNEIVPVGLTDDDFRRLLATIRDANALVVYVVDIFDLNGSIIPGLQRFVGDNPVLLVGNKEDVLPRQLRRTKLREWMNQQVRAQGIKPVDVALTSAKKGHAIDDLLAMIEKYRRGRDVYVVGVTNVGKSTLINRIIANNTGLKDLITTSRFPGTTLDKIEIPLDDGHKMVDTPGIIHPEQMAHVLSGDDLKLVSPQKEIRPKGFQLGNGQTLFLGGVARLDIVDTLKPTGTVYVDNNLTLHRTRTENADNFYTKHVGELITPPTGAAVADFPPLVRHEFKVTETSDIVFEGLGWVTVAADTRVAGWAPKGVAVLTRPAMINKR

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Crispr_ID: CP032659_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032659_4

2446354-2447907

TypeII

Consensus_repeat	Method
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	PILER-CR
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CRISPRCasFinder
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CRT

23 spacers

csn2,cas2,cas1,cas9,csa3

The CRISPR arrays of CP032659_4

>merge|CP032659|4|2446354-2447907|PILER-CR,CRISPRCasFinder,CRT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTGAAATGGGCGCAGTCAAGGCTGGATCACTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTATTTTCTATGCGCTGAAATTCTTTTAGGTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTATGTACATGTTAAAGGCCGTTAAGTTTCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAAGAAAGCTCCGTAGCCTGTCGCGCAAGTTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTAAACACCATCATCACTAAGTAATCCAGATGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGCTAGTCAGCTGGAAGTTGATGGACTAAAAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACATTTAAAGGCTATCCCATCAATGGTTATACGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACACGCGATTGTTGCCTTGCGACCAATACTCTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGAGAATTACCGCGATCAACAAGAACGGGTCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAATAAGCCTTTTAATGCCTTGCTCAGGGCAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACCAGCAATGTGAATCGAATCAGTGTCACAATGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGGGATGTCGGTCAGGGTGGTGAAGAAACCAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTAACGACGCTAAAGCCACGACCGCTAAAGCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAGCATACCCTGGTTGATTGCTCAGTGTGTCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTACAACTTGCATCCGCCGTTAGTTTGGTAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACATTGTCTGAGACGTCGGTACCAGTAATCAAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTCTCTTTTTCCGTAGTTATATAGTGTAAGGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACATTCTGGCGCCGGTGGTTGGCCGGTGATCCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGGTGAGGTATGCGGTGAGATGGTTATCTGTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACATGGCTAAACTGAACAAAACACAGACGTATGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGTTATACCGTCTAAATACCCGCAACACTCAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACCAACTTGAAGAAACTAGTTAAGAACATCCGGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACCGAACTGGCACTTGTACATCTAATGCATTTGTCTTGAATAGTAGTCATATCAAGCAAGTTTAGAAC

>CP032659|4|4|2446354-2447907|PILER-CR
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TGAAATGGGCGCAGTCAAGGCTGGATCACT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TATTTTCTATGCGCTGAAATTCTTTTAGGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTATGTACATGTTAAAGGCCGTTAAGTTTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAGAAAGCTCCGTAGCCTGTCGCGCAAGTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAAACACCATCATCACTAAGTAATCCAGAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCTAGTCAGCTGGAAGTTGATGGACTAAAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATTTAAAGGCTATCCCATCAATGGTTATAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACGCGATTGTTGCCTTGCGACCAATACTCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GAGAATTACCGCGATCAACAAGAACGGGTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AATAAGCCTTTTAATGCCTTGCTCAGGGCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAGCAATGTGAATCGAATCAGTGTCACAAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGGATGTCGGTCAGGGTGGTGAAGAAACCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAACGACGCTAAAGCCACGACCGCTAAAGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGCATACCCTGGTTGATTGCTCAGTGTGTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTACAACTTGCATCCGCCGTTAGTTTGGTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATTGTCTGAGACGTCGGTACCAGTAATCAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTCTCTTTTTCCGTAGTTATATAGTGTAAG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATTCTGGCGCCGGTGGTTGGCCGGTGATCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGTGAGGTATGCGGTGAGATGGTTATCTGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATGGCTAAACTGAACAAAACACAGACGTAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTTATACCGTCTAAATACCCGCAACACTCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAACTTGAAGAAACTAGTTAAGAACATCCG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CGAACTGGCACTTGTACATCTAATGCATTT
GTCTTGAATAGTAGTCATATCAAGCAAGTTTAGAAC

>CP032659|4|4|2446354-2447907|CRISPRCasFinder
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TGAAATGGGCGCAGTCAAGGCTGGATCACT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TATTTTCTATGCGCTGAAATTCTTTTAGGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTATGTACATGTTAAAGGCCGTTAAGTTTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAGAAAGCTCCGTAGCCTGTCGCGCAAGTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAAACACCATCATCACTAAGTAATCCAGAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCTAGTCAGCTGGAAGTTGATGGACTAAAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATTTAAAGGCTATCCCATCAATGGTTATAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACGCGATTGTTGCCTTGCGACCAATACTCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GAGAATTACCGCGATCAACAAGAACGGGTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AATAAGCCTTTTAATGCCTTGCTCAGGGCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAGCAATGTGAATCGAATCAGTGTCACAAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGGATGTCGGTCAGGGTGGTGAAGAAACCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAACGACGCTAAAGCCACGACCGCTAAAGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGCATACCCTGGTTGATTGCTCAGTGTGTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTACAACTTGCATCCGCCGTTAGTTTGGTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATTGTCTGAGACGTCGGTACCAGTAATCAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTCTCTTTTTCCGTAGTTATATAGTGTAAG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATTCTGGCGCCGGTGGTTGGCCGGTGATCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGTGAGGTATGCGGTGAGATGGTTATCTGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATGGCTAAACTGAACAAAACACAGACGTAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTTATACCGTCTAAATACCCGCAACACTCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAACTTGAAGAAACTAGTTAAGAACATCCG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CGAACTGGCACTTGTACATCTAATGCATTT
GTCTTGAATAGTAGTCATATCAAGCAAGTTTAGAAC

>CP032659|4|4|2446354-2447907|CRT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TGAAATGGGCGCAGTCAAGGCTGGATCACT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TATTTTCTATGCGCTGAAATTCTTTTAGGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTATGTACATGTTAAAGGCCGTTAAGTTTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAGAAAGCTCCGTAGCCTGTCGCGCAAGTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAAACACCATCATCACTAAGTAATCCAGAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCTAGTCAGCTGGAAGTTGATGGACTAAAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATTTAAAGGCTATCCCATCAATGGTTATAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACGCGATTGTTGCCTTGCGACCAATACTCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GAGAATTACCGCGATCAACAAGAACGGGTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AATAAGCCTTTTAATGCCTTGCTCAGGGCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAGCAATGTGAATCGAATCAGTGTCACAAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGGATGTCGGTCAGGGTGGTGAAGAAACCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAACGACGCTAAAGCCACGACCGCTAAAGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGCATACCCTGGTTGATTGCTCAGTGTGTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTACAACTTGCATCCGCCGTTAGTTTGGTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATTGTCTGAGACGTCGGTACCAGTAATCAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTCTCTTTTTCCGTAGTTATATAGTGTAAG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATTCTGGCGCCGGTGGTTGGCCGGTGATCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGTGAGGTATGCGGTGAGATGGTTATCTGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATGGCTAAACTGAACAAAACACAGACGTAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTTATACCGTCTAAATACCCGCAACACTCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAACTTGAAGAAACTAGTTAAGAACATCCG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CGAACTGGCACTTGTACATCTAATGCATTT
GTCTTGAATAGTAGTCATATCAAGCAAGTTTAGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP032659.1\|AYG41636.1\|2445651_2446329_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
CP032659.1\|AYG41644.1\|2456970_2457819_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
CP032659.1\|AYG41631.1\|2438436_2439147_+\|hypothetical-protein	unknown	unknown	unknown
CP032659.1\|AYG42660.1\|2452245_2452719_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP032659.1\|AYG41630.1\|2436902_2438267_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182694
CP032659.1\|AYG41642.1\|2455061_2455382_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP032659.1\|AYG41645.1\|2457903_2458776_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381314
CP032659.1\|AYG41628.1\|2434261_2435854_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|214906
CP032659.1\|AYG41640.1\|2452863_2453286_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107228
CP032659.1\|AYG41629.1\|2436200_2436665_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240033
CP032659.1\|AYG41633.1\|2440196_2444273_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
CP032659.1\|AYG41639.1\|2451533_2452136_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
CP032659.1\|AYG41637.1\|2448079_2450824_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
CP032659.1\|AYG41627.1\|2433545_2433890_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP032659.1\|AYG41635.1\|2445349_2445655_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
CP032659.1\|AYG41643.1\|2455443_2456634_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
CP032659.1\|AYG41638.1\|2451274_2451469_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
CP032659.1\|AYG41634.1\|2444466_2445372_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP032659.1\|AYG41641.1\|2453612_2454845_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340949
CP032659.1\|AYG41632.1\|2439171_2439954_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
CP032659.1\|AYG41636.1\|2445651_2446329_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	6.62427e-94
CP032659.1\|AYG41644.1\|2456970_2457819_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	7.15438e-122
CP032659.1\|AYG41641.1\|2453612_2454845_+\|MFS-transporter	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.25988e-139
CP032659.1\|AYG42660.1\|2452245_2452719_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.55097e-07
CP032659.1\|AYG41630.1\|2436902_2438267_+\|amino-acid-permease	gnl\|CDD\|182694	PRK10746, PRK10746, putative transport protein YifK; Provisional.	0
CP032659.1\|AYG41642.1\|2455061_2455382_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.32606e-15
CP032659.1\|AYG41645.1\|2457903_2458776_+\|aldo/keto-reductase	gnl\|CDD\|381314	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR). Xylella fastidiosa phenylacetaldehyde dehydrogenase is a founding member of aldo-keto reductase family 13 member B1 (AKR13B1). phenylacetaldehyde dehydrogenase (EC 1.2.1.39) catalyzes the NAD+-dependent oxidation of phenylactealdehyde to phenylacetic acid.	2.0177e-123
CP032659.1\|AYG41628.1\|2434261_2435854_+\|DNA-binding-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	9.31328e-17
CP032659.1\|AYG41640.1\|2452863_2453286_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107228	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic membrane.	5.69509e-43
CP032659.1\|AYG41629.1\|2436200_2436665_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240033	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.37635e-56
CP032659.1\|AYG41633.1\|2440196_2444273_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.1848e-121
CP032659.1\|AYG41639.1\|2451533_2452136_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.68812e-30
CP032659.1\|AYG41637.1\|2448079_2450824_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
CP032659.1\|AYG41627.1\|2433545_2433890_+\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	5.91269e-39
CP032659.1\|AYG41635.1\|2445349_2445655_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.31062e-24
CP032659.1\|AYG41643.1\|2455443_2456634_+\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.81508e-117
CP032659.1\|AYG41638.1\|2451274_2451469_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	1.41519e-17
CP032659.1\|AYG41634.1\|2444466_2445372_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.90759e-89
CP032659.1\|AYG41632.1\|2439171_2439954_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.15106e-28

>CP032659.1|AYG41636.1|2445651_2446329_+|type-II-A-CRISPR-associated-protein-Csn2
MNLTYYPFPPFKINTGQVNILDIGNSQMYADICQGFRDRTDDLRVSNDNLELQTMSSQCSWYGDLMLSVDLNRLFMKKIQTQIIKLMADEQQVAVLDQSRAMIAKVMEASFLLDLPLDVEEAPGLDQALKFAGIHFPTDLTHNPSAVLEALVQTHVELGLKQCPVMTNVSHYLNPEQWAVFEQQVADLDITVIIIEYSETNRMEKFKNCCYYYVDEDLVDWRDMN
>CP032659.1|AYG41635.1|2445349_2445655_+|CRISPR-associated-endonuclease-Cas2
MRLIVMFDVPMDTSDQRRAYRHFHKALIREGFLMMQYSTYVRVCVNKKAAEFVEKRIAPLAPKGGKVQTMTVTEKQYQAMHYIQGAPSTDVLNSAERTIVI
>CP032659.1|AYG41634.1|2444466_2445372_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRNVIITQHAKVSYSMNRIIVQTSTDKHVIPVSDIQLLLVGTTQAVITSAALCALAEAHVKVIFTDHQGEPISEVNDYYPTRRTAKLVRQQVAWPESRIAKLWTKNIGSKILNQIQVVDFVGGNVQPLVDELDKLELNDVTNREAVVANKYFSLLFGEGFYRRDFSSINAALNYGYAILLSMVNREIVMNGYLTCIGIHHENNENEFNLGSDLMEPFRPIVDQWVSQQRFDEFTPDIKIGLVSLLDLEIGFNGHQTIVSHAITTYVADCLHYLSSETEELKIEVKLPDEVSSHAINSHV
>CP032659.1|AYG41633.1|2440196_2444273_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNEPYGVGLDIGTNSVGWTVVDMNGRVRKVKGKTALGARLFKEGATAEDRRGFRTTRRRLKRVKWRLRLLREFFDQPISKIDPNFFARRKYSDISPRDPNYNGLAKTLFNDRTDQEFYHDYPTIYHLRDKLMTSDRKFDIREIYLAIHHIVKYRGNFLRTGPASQYGSASLHLATSFQKLNDLFAQSEESLNFKLVTDEAQLQQIQQILVRTDLSRSEQQRQIWPLMVVLTGATAAEKKRQKDFAKELANALVGLKAKLNVVTLTNVDTTVVKDWTFTLEESQDKLPEIEEQLSEVGQQIMDEVIQLYASVNLAQLIPAGKRFSQHMVEKYNHHEKNLELLKAYIHSQSDSKRGREIRATYDRYIDGVKSKPVTQEMFYKDLMKYVEADATSNHLAAEIKDEIDSEQFMPKLRTKQNGSIPYQVQQYELDQIISHQKKYYPWLGEENPVAERRGKFPYKLDELVGFRVPYYVGPLITKEDQQATSGAGFAWMVRKADGPITPWNFDQKVDRIASATAFIQRMQTTDTYLIGEDVLPARSLIYQRFMVLNELNNMRVEDQKLAPRQKQRLYNQVFKQHQHVSVKNIQQNLMDAGEYRETPKITGLADPKGFNSSLSTYHDFKKILPEAIADEHKRADIEKIILWSTTFEDSAIFKQKLEEVAWLTDAQRKQLSGLRYRGWGQLSHKLLTAFKDDNGRSVMDGLWETSDNFMQLRKQPAIETQIKEANQANLTDADIQDTINELYTSPQNKKAIREVMLVLDDIKNAMHGQTPSWIFIEAARGGGVAGRRTQSRSKQIVEAYKSTAKEIVSEKVQHELNEKIKAKADFNTRLVLYFLQNGRDLYTNEAINIDRLSEYDIDHILPQSLVKDDSLDNRVLTSARINREKNDTFASEKFGRKMGAQWRELHRNGLMTQRKLKHLLMRPDEISKHATDFINRQLVETRQVIKLVEELISSEYPSASIVAVKANLTHQFRQTFNFPKLREVNDYHHAFDASLTAFIGMYLLKQYPKLERFFVYGKFAKQPINLTRFNVIRKLAVAEEPIANIETGEILWDKTVDIKYFEKLYNYKRLLVTHEVRENYGAMFDQTIFKATDSRKRLIQKKKGFATETYGGYTGRTLAYLTIVKVVTNKDTQYQVVGIPTTMVTQIQQLEASGLTSKQAVTKAIGAMINENNKKLQSYEVLLPKVRFEQVVRDEVKGHIHRFALGTDTYYHNIQELYLPLTIQRAFLGKRNDTDVQTEQNLLTVFETTLAQVNRYFPLYEMNKFKQILNSAQEKFAALPTKNKTVKNKFVIGKDGVLNNLFIGLHANASFGNLKVLGAKTSFGQLQVPGGLKLTDQAEIIYQSPTGLFERKVALKDL
>CP032659.1|AYG41632.1|2439171_2439954_+|alpha/beta-hydrolase
MHFITSDHVQLDYTDQGSGQPIVILTGFGGSKDIWHAQIPVLVQAGYRVINLDGRCQGLSEHTVKGLRMSRRAVDAHELIEKLQLKQPILLGNSMGAATWFAYVSLYGDTGIKALIDVDQSPKMINTPDWPYGFKSVQWVDFPDYFRMPLGHSTFKHIDDDTYARVTAVEEQAPFDGKLMFPLLVNHAVQDWRDIVRQLTVPFLIIAGEKSPFFDSDFAAVTAKMAPLGQSVVVPDAGHIVMAEQSAAFNEALLAFLRTL
>CP032659.1|AYG41631.1|2438436_2439147_+|hypothetical-protein
MVKQGRYAGVSKQKRLRQLKQRHQAQEQRAIRPGAVGEFLQVRYHLTQAGQQRPVMRQTMQRFMSRWLANAQDLLDEDEQTTWSMTALTKQAMQQFNRQLPWQGYALLDQEMPHWTAFLTKEVPAVPLQERISLVEPLTTETWRACLTEQLAVNTMLAMTHNNRQQLQQVQTDQIQSLQTSIQTANGVDWEKVAQLLGPTVTEPDPLTSTMMDNKTKQWLERLNKLTPAKFNTDVE
>CP032659.1|AYG41630.1|2436902_2438267_+|amino-acid-permease
MQRKLSTGQMQMIALGGTIGVGLFMGSSSTIKWTGPSVLIAYIVSGAFLYLIMRALGEMLYVDPNTGSFAKFASEYIHPVFGYLTAWSNIFQFVVVGMSEMIALGGYCRYWWPNLPDWIPGLIAIVFLCAANLISVKMFGTLETWFSLIKVITIILMIIAGLGLIIFGIGNHGQPIGISNLWTHGGFFTGGVKGFVFALAIVLASYQGIELIGVTAGEAENPQSTIVKAIRSTVARILIFYVGAIFVIVSIYPWNQLSQIGSPFVQTFAKIGITAAASIINFVVITASLSGTNSGIYSASRMTYTLAESHQLPKKMTLLNRHGVPFYSVIAIATGILIGVVLNVVLPMFFKDAGEIFVMVYSSSVLPGMVPWVVILVSQIAFRKQNAAKMKNHPFKMPFSPYSNYLTLAFLALTLLFMFINPETRYSILVGVVFLIVMTLIYFRKYAGNKEDNL
>CP032659.1|AYG41629.1|2436200_2436665_-|NUDIX-domain-containing-protein
MANYIKEIRALVGHKPIILNTAAGILVNDQQQVLLNLRTDTHNWSLPGGYLEYGETYATACVREYKEDSGIDVEIVDRIAIFDKGETAYPNGDVAQTISALFLVKPVGGQALTHATDETLKLDYFDFDNLPPLLNQQNADMIHAGQQYLQAHPQ
>CP032659.1|AYG41628.1|2434261_2435854_+|DNA-binding-protein
MKQIEMGMRITTNQQKIYRVIAVVNQGQQILARPIEPETAPVEVIAITDIVQITEQKPAKATGLALDTVAVVGQRYIDNIIPVLAELEVGLPVLLQRESNNQYDDNAISVWTCQHEKLGYVARYQNQPYAALMDQGQLLYGTVTELDKKQQHLSVMVWRTTTGESSVEAMQARQQLTTQSTSLGAMPKHLLQTPLGTLVVLCNGRPINYQRVPLSPWLTPDDALQVTKRYLITPDWSQVPANSLVTCQVTATADVVQRWQDDRISAAVLTNASSFYVVGLSAQTRTGLNDNLVDDGSQAAVIYRVGQLKAHEQAGFMVSWAPFGDPRVQPALKLALQFTSQPVVPYQPKTPSQTHATFTQQELAAILVSALPNYQGGQRLEPSVTAITVEKIRQTLGDQAYHALANYQQYVQLAATSTEDVDETLLQALIHAVVYHEITTMHYYQPTVGMVDHVIYPLQLFSTTTKDDESQLIGCLAFYNYAMFEIQQVPLTAIARIAIIADPEHPQMTPTTESPDWLRIFLRGWNDDVE
>CP032659.1|AYG41627.1|2433545_2433890_+|transcriptional-regulator
MHTRKIFDCQAGCPVESTLQVIAGKWKSVILYHLLTSGVCRFSELQKRMPDCSRRMLALQLQELEHDQLISKRVYPVIPPKTEYRLTDFGLTLKPVVMEMEKWGRLYNARQVAD
>CP032659.1|AYG41637.1|2448079_2450824_-|cation-transporting-P-type-ATPase
MINDDNNQSLSANNDAQNDSQNPPDADNLWQLDESALANKYATDPENGLSTAEAAARLQHNGRNELETKRTSRFVQFIKQFNNSIIYILAAAAVLTFFMHHYSDSIVIGLVIIANAIIGYVQERQAGNALERIREMLISKNFVIRDGKKLEIDARELVVGDLVNLEAGDAVPADMRLISADNFNVQESVLTGETNPVEKQEEPMTDTSLALADRKNMVYASTAVTSGSAVGIVTATAADTEIGHIQQSVSDVKETTTPLMRNLNSLGVGLSIAIVVAAVLLFLLGMVMDTYSLPTLLIAVITMVVGSMPEGLPASTSVVLAMGTRQMTKKNVIVKSLPAVETLGAVDIVNTDKTGTLTKNEMTVTKVVTPEHTFDVTGVGYDDNGGVNFDGHLKLNGQKVDWHQDKAMEWLVKIAGQTTDAELHFENNRWELTGEPTDGALTTLFRKMTGHDPEVDEIESLPFDSAFRFSARLADLDGQRLLMVKGSPATVLRLTDQANQTAYWDNAMDDLTADGLRVVALAYQVVDDDVTDIDPKAISGLHLAGFVGIIDPPREEAATAIAELRQAGVDVKMITGDHPDTAMAIANKLNLAANVKAITGPEIDAMDDQQLQEHIDDYNVFARATPNNKLRIVRAQQANNHVVSMTGDGVNDAPALKQADIGVAMGIKGTEVAKESADMVLADDDFADIVAAVREGRHVFDNIRKTIRFLLPTSFAEGLVVIISILMGHELPLYPTQLLWINMVSALTIQFAFIFEPPEAGIMARGPRNVKSGLLSKLDYFEIGYVSFLISGLGIFAYDYLTALGLPNVVGSTMSLNIIIFGKIFYLFNLRNDHPVISKYFFQNKMAFYIIGILILLQLGIIYLPFMQSVFHTTSINFWYGWGIPIVCGIVVLIVTEIGKFIRFRRMGKDRVLD
>CP032659.1|AYG41638.1|2451274_2451469_-|PspC-domain-containing-protein
MKINIHRSATNRVLAGVIGGIAEHFNWNANITRLVFVLLAISPMFPGIIAYLILWLLMKDPAES
>CP032659.1|AYG41639.1|2451533_2452136_-|NADPH-dependent-oxidoreductase
MVKIGIILGSTRTQSNGRALFNYLKRNLDQWQTDEAITTAFLDLAHYQLPFFDEPEPPMANPHRQLPANQQQWLDDMAAMDGYIILTPEYNHAMPAGLKNALDFLAFEGLRKPVKLISYSDNMRGGQFGAAALVPVLQRLGMVVLPKPTPVGNVPQTLQADGQVIPDAPLASRYESGLQRAVGEIAYYTTVLTQHPFLTD
>CP032659.1|AYG42660.1|2452245_2452719_+|MarR-family-transcriptional-regulator
MMAMLIDQLMSELNQFIAQDSVDDQEKQWAMRQTTDPQLQAVLKQLSTTDIKMIAVLGQVGASRAKALPAPTGLSQATISRGLTKLARLGLAVKYRDLTNNKEVLVRLTPTGQQVAQLHTQLDAAIAQQAQAIADDYSDAELARFVTLMKRIREIKI
>CP032659.1|AYG41640.1|2452863_2453286_+|Hsp20/alpha-crystallin-family-protein
MANTLMNRNDFGMMDPFERLARSFWTPFENMDQVLKTDISETDDQYQVKVDVPGIDKQDVKLDYRDNVLSIKVQKDSFVDHEDEQQNVVMNERHTGTLQRQYMLPNVAADKISASQADGVLTITLPKTQASDDNGTIEIQ
>CP032659.1|AYG41641.1|2453612_2454845_+|MFS-transporter
MDDAERERGPWHRNLIVLWFCTFVAGMAFSEIMPFLSLFVSQLGDFTKAQVTFYSGLAFAADYAISAISAPLWGIIADKKGRKIMLLRASFGMAVAMGLMGLVTNVWQLIVLRALQGVFAGFISNAQALVASQAPRKYSGRALSTLITGAVSGQLFGPVIGGFLAQLFSIRNTFFITAGLLLVAFLLSLFFVQEHFKPVEHHRNPGDSRNPLAAFQNPRLIIMMLCSTAIVQFGNASIAPIISLYVRELMHYKGPITVVAGIIAALPGISNIFSAPRLGRYGDHHGSGKVLLFGYIFAVIMYFPQGIVTSVVALGILRFAIGISDGALYPEIQTVLTKNTPVNLTSTIFSYNQSFQAIGNMLGALLGGLVAGWFNYNAVFIMTALLLLINLVLILWLVPGIWKTGDRVAS
>CP032659.1|AYG41642.1|2455061_2455382_+|ArsR-family-transcriptional-regulator
MGCSLSFMNIEINQQNQEDQQRVAIFKALADDNRLRIIRVLYQAQREMTCGEVGAQLNISKSTVSYHFKALRLVGLTNTRREAQTKYLSLQRATFDHFLPGFLDSL
>CP032659.1|AYG41643.1|2455443_2456634_+|MFS-transporter
MTTTHQHSRYLTLGMILAATNMRLPITMMPGLISSLKRTLGLPSSMAGLLTTIPLLTFAVMSPLIAHWGRRFGNELTIYVMLIFLALGSYLRVIPTIAALFIGTLLVGIGADGGNVLIPAIIKDNFPTKIPVATSQYTLSMLLVGSLGTGISGVLAAHWSLPATMAVLSVIGLINLVVWLPNLKYNHREPVATNDEQDSTVVTHGSVWGRPLAWVVTAFFGLQALVYYSLLTWLPTVFTAHGFSTIVAGNLVTIMQLSGLPMSFIVPTSSGKRRGVLAMIWVVGVGFIAGIGGILMSGTSFGWSALWCILLGLGSGAAFSLAVVFFTQKTTNGFETADLSGMAQSAGYLLAAIGPVLFGWLGGQLGWAPVLWLAIGFSALLALAGSIIFRHDSIYD
>CP032659.1|AYG41644.1|2456970_2457819_+|aldo/keto-reductase
MAILTSTYQLANGVQIPKVAFGTWQIPGGDTAYQAVRAALKAGYRHIDTALAYRNEASVGKAIRDSGIPREQVFVTTKLPAETKSYQGALADFDESLKNLGLDYVDLYLVHAPWPWSQVGRVYDEANLEVWQAMEAIYDSGRAKAIGVSNFAVRDLKNVLKQATVAPMVNQIQYYLGFTEPKITQFSEDHDMLVEAYSPLATGGVLDNPQVQAYADKYGVSVAQLALRFVLQNGVLPLPKAVTPAHITANTQLDFTISDADMAALNALPDAAGAYMHNPTQG
>CP032659.1|AYG41645.1|2457903_2458776_+|aldo/keto-reductase
MTTINAANAGTYAFDDQFKVNRLGYGVMQLTGPGTWGPYADPENGVKVIKKALEYGVNFFDTADSYGPWYADRYLAAGLKDAANRDKIFISDKVGQTRQGPNVWTPHGEPHYLRQQVEVSMMTLGLDHEDLVFLHRIDSHFSIAEQVGELKKMQDEGKIKHIGLSQVTVEQIKEAQKVAKIDAIENLYNVSDHRDDDVVDYAASQNMAFLPWFPLATGELAQPGSALSTMAQKYQVSPAQIALAWLLKRSDNILPIPGTSSIEHLQDNVAAANVELSTADFNGLSQLSNK

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Crispr_ID: CP032659_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032659_5

2708162-2708240

Orphan

Consensus_repeat	Method
ATGACAAGAGCGTATCAAGCTTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032659_5

>merge|CP032659|5|2708162-2708240|CRISPRCasFinder
ATGACAAGAGCGTATCAAGCTTTAGTGGGTAGCCAGTGAAGCTAATACAATCAGATGATAAGAGCGTATCAAGCTTTAG

>CP032659|5|5|2708162-2708240|CRISPRCasFinder
ATGACAAGAGCGTATCAAGCTTTAG	TGGGTAGCCAGTGAAGCTAATACAATCAG
ATGATAAGAGCGTATCAAGCTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
CP032659.1\|AYG41856.1\|2710367_2710814_-\|ribonuclease-H	unknown	unknown	gnl\|CDD\|260010
CP032659.1\|AYG41850.1\|2704546_2705056_-\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
CP032659.1\|AYG41853.1\|2707471_2708080_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	unknown	unknown	gnl\|CDD\|235777
CP032659.1\|AYG41848.1\|2702534_2702903_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|377753
CP032659.1\|AYG41863.1\|2720212_2720935_+\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
CP032659.1\|AYG41844.1\|2698276_2698546_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237495
CP032659.1\|AYG41846.1\|2699722_2700391_+\|ribose-5-phosphate-isomerase-A	unknown	unknown	gnl\|CDD\|238692
CP032659.1\|AYG41852.1\|2706393_2706864_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|366911
CP032659.1\|AYG41849.1\|2703128_2704391_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
CP032659.1\|AYG41847.1\|2700736_2702242_+\|copper-oxidase	unknown	unknown	gnl\|CDD\|236810
CP032659.1\|AYG41854.1\|2708341_2709262_-\|ribonucleoside-hydrolase-RihC	unknown	unknown	gnl\|CDD\|182713
CP032659.1\|AYG41862.1\|2718368_2720198_+\|type-1-glycerol-3-phosphate-oxidase	unknown	unknown	gnl\|CDD\|380303
CP032659.1\|AYG41855.1\|2709398_2710310_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|180448
CP032659.1\|AYG41857.1\|2711685_2711874_+\|hypothetical-protein	unknown	unknown	unknown
CP032659.1\|AYG41861.1\|2716836_2718354_+\|glycerol-kinase	unknown	unknown	gnl\|CDD\|234594
CP032659.1\|AYG41858.1\|2711921_2713448_+\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
CP032659.1\|AYG41859.1\|2713447_2714419_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
CP032659.1\|AYG41860.1\|2714515_2715847_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
CP032659.1\|AYG41851.1\|2705086_2706283_-\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|378274
CP032659.1\|AYG41845.1\|2698965_2699529_-\|peptidase-M10	unknown	unknown	gnl\|CDD\|239796

Protein	Function_ID	Function_description	E-value
CP032659.1\|AYG41856.1\|2710367_2710814_-\|ribonuclease-H	gnl\|CDD\|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	1.65332e-07
CP032659.1\|AYG41850.1\|2704546_2705056_-\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	5.32858e-47
CP032659.1\|AYG41853.1\|2707471_2708080_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	4.55717e-27
CP032659.1\|AYG41848.1\|2702534_2702903_+\|DUF1304-domain-containing-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	9.60198e-32
CP032659.1\|AYG41863.1\|2720212_2720935_+\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	5.83058e-83
CP032659.1\|AYG41844.1\|2698276_2698546_+\|hypothetical-protein	gnl\|CDD\|237495	PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.	0.00498092
CP032659.1\|AYG41846.1\|2699722_2700391_+\|ribose-5-phosphate-isomerase-A	gnl\|CDD\|238692	cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.	3.58356e-75
CP032659.1\|AYG41852.1\|2706393_2706864_+\|transcriptional-regulator	gnl\|CDD\|366911	pfam02082, Rrf2, Transcriptional regulator. This family is related to pfam001022 and other transcription regulation families (personal obs: Yeats C).	2.53931e-16
CP032659.1\|AYG41849.1\|2703128_2704391_-\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.04877e-55
CP032659.1\|AYG41847.1\|2700736_2702242_+\|copper-oxidase	gnl\|CDD\|236810	PRK10965, PRK10965, multicopper oxidase; Provisional.	5.5682e-115
CP032659.1\|AYG41854.1\|2708341_2709262_-\|ribonucleoside-hydrolase-RihC	gnl\|CDD\|182713	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.	0
CP032659.1\|AYG41862.1\|2718368_2720198_+\|type-1-glycerol-3-phosphate-oxidase	gnl\|CDD\|380303	NF033461, glycerol3P_ox_1, type 1 glycerol-3-phosphate oxidase. Glycerol-3-phosphate oxidase, also called alpha-glycerophosphate oxidase (GlpO), is an FAD-dependent enzyme related to the glycerol-3-phosphate dehydrogenase GlpD. Notably, GlpO releases hydrogen peroxide, which can contribute to virulence.	0
CP032659.1\|AYG41855.1\|2709398_2710310_+\|oxidoreductase	gnl\|CDD\|180448	PRK06182, PRK06182, short chain dehydrogenase; Validated.	8.9559e-162
CP032659.1\|AYG41861.1\|2716836_2718354_+\|glycerol-kinase	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
CP032659.1\|AYG41858.1\|2711921_2713448_+\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.53469e-156
CP032659.1\|AYG41859.1\|2713447_2714419_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	7.46115e-130
CP032659.1\|AYG41860.1\|2714515_2715847_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	3.75814e-126
CP032659.1\|AYG41851.1\|2705086_2706283_-\|DUF2075-domain-containing-protein	gnl\|CDD\|378274	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.	1.06536e-130
CP032659.1\|AYG41845.1\|2698965_2699529_-\|peptidase-M10	gnl\|CDD\|239796	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.	1.11547e-15

>CP032659.1|AYG41853.1|2707471_2708080_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit
MELDKIYQLMDKFEQSSLTSFEYRDQDFEIQMGKKGHNSKATTASSEPAPLPNQPVIDPTPVTPTPIANASAASVVEPTPTATVTSTAAATPTSIAPESTPEPEPAPTPEPAPVQVDPKECVTAPVVGIYYPAHSSEEAPYVKLGDHVSVGQQVGLIQAMQMMRPVVAKQAGTVKAFLVKNGEEVNFGQPLIQLIPDTPDDI
>CP032659.1|AYG41852.1|2706393_2706864_+|transcriptional-regulator
MKLDFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLPLVEMNLGDLYDLTIPPTISYARFITGPSKTDEQASQSPIAANISETLTDLFTVADRQYRAYYHQFTMADLQQDLKQHGLFLKREHDSES
>CP032659.1|AYG41851.1|2705086_2706283_-|DUF2075-domain-containing-protein
MSSTISAATFKLNEQAALSPAQQSLEQQLLTFIRSHRHQDQSSLFVIHGDAGTGKSAVLAAAFGRLQALSRSTTANDLQATENYLVVNHNEMLKIYKRLAGDDPDLRKKDFQKPTPLINRLTKTHQRADVIFIDEAHLLLTQPDRYNRFDGNNQLTELIKHAHVVVLVFDTRQVLKLKSYWHENDLEPFLAHYPHASYNLDEQFRVTGGPAVVNWIDHFTHGQLLEKPATPDFDLRFFDDGQPMYDLIRQQDHRFGLARMVATADFPYVVNHGTWYVTAGQLKLPWDKVNLTDDPWALRPETLNEVGSIYTIQGFDLNYAGVILGPSVGYDAVHDRVIVRPERYEDQEAFKQRADLGDLEPLKQQIIFNSINVLMKRGRYGLYIYAVDPALRERLLAL
>CP032659.1|AYG41850.1|2704546_2705056_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MQLSIPTTDGALAATYSKQAAPAQIYKGHPIISFPVDISDVPAGTHSLAFTFVDHDAIPVGGFTWIHWIAANLPATTTHIPENASQTGAIPMVQGNNSTAGGYVHETDPKVSQHYVGPYPPDKDHRYSFKLFALDTELDLQPGYWLNEFHDAIAGHVLATAKTTVIGRV
>CP032659.1|AYG41849.1|2703128_2704391_-|ISL3-family-transposase
MSQDHSTKVLLQIKDPNITDLVVQEATNGSLQVFAKLTYPVTVCARCGKRSMVKNGFKTVHIRIPRISERVTILNLKKQRFICKNCGKSSLTTTKLVKKHHQISENSLHAIDLSLTEDRTMVSIAAQYNVSTNTIIRRIKLLGQGTQPAFNGLPTMLCIDEFRSTGKQMSFIAVDAQTHDIITILPGRKNADIKDFFLNHYSKRQRDRVTRVVMDFNSQYQPAIRTLFPHAKLVADNFHLVQMALRSLNQTRVQLMKRFNPKSREYRLLKYYWRLYLKDYDSLEKRKPQWFAHLKDRMTQEQLVVAGLNLDQQFRQTYQAAHALVKSFQKRDYRSFEAALGNVENVSPQLMTNIKSFIKNRQLIKNMTTGRLSNGPIEGVNRKIKQIKRTAYGYKNWQNFIYRIQIEFKIKIEKKNPIRK
>CP032659.1|AYG41848.1|2702534_2702903_+|DUF1304-domain-containing-protein
MHIAATIMALVVAVEHLFILWLEMFNADSELASKSFGIPRQTLQSPAVQLLFKNQGLYNGFLAVGILYSLFVIPAVASAGATLFFLACVMVAAVYGSITVSRAIVVIQGLPALIAFILMYFA
>CP032659.1|AYG41847.1|2700736_2702242_+|copper-oxidase
MAKKVYTDYFFDEPAYNTHDGGYIPLVTPKVDPQPLAIPPLLQPDRQTDTDDYYTVTAQESETQFLPGKKTKTWGYNAGFLGQTIVFRNGKQTHIDLQNKLPELTTFHWHGLNVPGPITDGGCHAPVYPGQTNHIDFKVHQPAATTWLHAHPCPSTATQVWKGLATMVIIKDDVEDQLPLPRNYGVDDIPMVLQDREFHEDNQFDYRADYDPDGVQGHTALVNGTVNPYFDVTTQRVRLRILDGSNRREWRLHFNDDLEFAQVGSDGGILPAPVYMTKVMMTCAERDEIVVDFGNYQPGDEVTLMTDDTPLCRFRIKAFEPDDTTLPDHLVDIPDEAPTADLPVRKITMDGMDDEVALNGKKFDMERIDARQKVGDVAIWEIRNTNSTENGMVHPFHVHGTQFTVLSRNGGPVYPNEHGLKDTVGVNPGETVRIKVKFELTGVYMYHCHIIEHEDGGMMAQIESYDPEHPQTYHLMDMDTLRNAFAEEQGVKPEDVWMPGM
>CP032659.1|AYG41846.1|2699722_2700391_+|ribose-5-phosphate-isomerase-A
MTIKQAIVQQALTLIKPQMVVGFGGGTTVGELVKEAANLVNDITVVTPSPTTRQLATVLGYTVVDTAYCDRVDIAFDGCDQLDHHGNALKSGGGIHANEKIIASLADEYWLLTMQDRLVDQFDIKTPLVLEVLPGALSLVMRSVSDLGGQATIRTAENRDGFTLTDSGNLLIDCHFPTYANLPTLNTALTTLAGVVETSYFDRLVTNAWLGDAATNTVRALF
>CP032659.1|AYG41845.1|2698965_2699529_-|peptidase-M10
MKRKYRAKLGLTTLTIIVGIGLTPIANAKSIATPISRSRWPHAQVTYVIQASASERRVYQAAIRAWNATGQFKFVQGTTAHHQVTLETSNATTGQYYRLAGITFSTGYPNGYYTKAQVYLLTRNFTRYHYSYSDQVHVAEHELGHTIGLEHSRDRHSVMLADNRYNGISSADSTAVRLRYRLPVGRL
>CP032659.1|AYG41844.1|2698276_2698546_+|hypothetical-protein
MRRQLTNRQRWLVIIVATILGVGCALLGQWGQLLGVVAAALALMLLTSGCLTFCHHRGWQPGSGMLLALAMATGYVIIILGSYGYLLRS
>CP032659.1|AYG41854.1|2708341_2709262_-|ribonucleoside-hydrolase-RihC
MSTKIIMDTDPGIDDAAAITIALNHPDLDLQLITTVAGNVTVDKTTLNALKLTRFFNSDVPVAGGAPQPLIKPFEDAVRIHGVSGMPGYDFPTDLADPLPETAVEALRDYIMAAEQPITLVPTGAYTNIALLFKTYPEVLPHIKEIVAMGGALGKGNMTSAAEFNVFTDPHAAEIMYQSGVPITMVGLDVTMKALLTRESIEQLPAFGKTGEMLHALFGHYNDRNQTGVAMHDVNTLFYLLHPEAFTTEAMWIDVQTDGPANGETVGDIRGAYHDGKTNANVCVDIDAAAFNKWFLATVKAIDEQL
>CP032659.1|AYG41855.1|2709398_2710310_+|oxidoreductase
MSQPRVILITGASSGIGKATALKLQAQGNIVYGAARRIEKMTDLAAAGVHVLKVDVTDEATLIAAVKTIQVEQGRIDVLINNAGYGSYGALEDVPVTEGEYQFKVNVFGVMRLTQLVLPLMRAQHRGRIINVSSIGGKIYQPLSAWYMGTKHAIEGMSDSLRMEVAPFGIDVVIIEPGGIKTEWAGIAEKKLLAVSGETAYRDQAIKVGAMLSLFDQFASNPGVIAKLMVRAVNDVKPKTRYHAGMGASLSLTGRRWLSDRQFDRMMTSAVNGAAKLSKVTRRKDRRAGSRHYQHGNSTNETN
>CP032659.1|AYG41856.1|2710367_2710814_-|ribonuclease-H
MTTIHLYLASTMHQANPITATTPAAWVVILRYADHQKALNDAGYGHTETQLTLSALIEALTTLKRHDLPVHVHTTTEIVATIISEQRYLTWRQNDWQLPDDQQDNLTQWQQLVPLIEAYPDLQVTYHPVDDPTMTTATTTLTAVMTKL
>CP032659.1|AYG41857.1|2711685_2711874_+|hypothetical-protein
MSALFQRCQPAPEVGLGRASADEQESSNDMFQLHMKPQKLQLIAILGAYYYDFGRSMLRLNT
>CP032659.1|AYG41858.1|2711921_2713448_+|ABC-transporter-permease/substrate-binding-protein
MQTLIQTFMDRRSDLLTALWQHLGISLAALVIAMVIAIPLAIWVVRRPRWAEGLLQLTSVLQTIPSLALLGLLIPLVGIGTVPAVIALVIYALLPIFQNTYLGISEIDASIEEAADAFGMSRMRKLFKVELPIALPQIIAGIRTALVLIIGTATLAALIGAGGLGTFIMLGIDRNDTSLLLIGAISSALLAILLSALVRWFQTAKPRHALIVFVGILALLGGGGAYSVYANRVETITIAGKLGSEPDILINMYKQLIEAEDDHIHVTLKPNFGKTTFLFSALKNNQIDIYPEFTGSVLETLVKGNNPASQTANQTYQLAKKRLAKQEQMTYLKPMQYNNTYALAVTKKFQQEHHLKTISDLTQVESILKPGMTLEFIDRDDGLKGIKKTYGLDVTAKSMEPALRYEAISKGKINLVDAYATDSELRQYNLALLKDDKHFFPTYQGAPLMKTSFANKHPKVVQALDKLAGKISETDMQEMNYEVNVKKKSASTVAHNYLVKHGLLKEGR
>CP032659.1|AYG41859.1|2713447_2714419_+|ABC-transporter-ATP-binding-protein
MTTAIEFQHVQKDFNGQTVIPDLNLTVDQGELFVLVGTSGSGKTTSLKMINRLEPLTAGKILVNGADTTTVPVRDLRWQMGYVLQQIALFPTMTVAQNIAVIPEMKGTAKKTINQTIDELLTEVGLDPQEYRDRMPSELSGGEQQRIGILRAIAAQPDIVLMDEPFSALDPISRQQLQDLVLGLHARYHNTIVFVTHDMNEALKLGDRIGVMQHGQLVQVDTPTALAQHPVNDFVRDFFGASRAKNVYDVYVGRVGLVQGYLKTAPDVADGRIQSLDIQATLRTAFTALTDHDYLAVTEDDHVVGYLDRQRVVAYLSQHEEVS
>CP032659.1|AYG41860.1|2714515_2715847_+|NAD(P)/FAD-dependent-oxidoreductase
MTEQYDVVVIGGGPAGNAMASGLQAQGKSVLIVEADLWGGTCPNRGCDPKKILLSAVEAQQAAQHLQHQGLTGTPTIDWPALMAHKRGYTDGINDGTLKGLQHQGIATLHGQAHFQNDGQLAVGDQVVSATDYVIATGQRPAILPITGQEYFKTSTDFLDLDEMPKRVTFVGGGYVGFELAAIANAAGADVHVIHHNDRPLKAFDADLVQDLMAAMTADGVTFDLNTDLQAIEQTDAGLRLTAPDFELTTDLVISSAGRIPNADQLGLENVGVTFNRHGIQVNDRLQTANPHIYAIGDVSDTPVPKLTPVAGYEARYLVQQLTHPGAAITYPVIPTQVFAAPKLAQVGLSATDAADQPDKYRVNTLDMTKWFSYYRFGAQQAQAKVIIDQTSGQVVGATLLSDVADEMINYLTLLIEKHVTLAQLQQLVLAYPTPASDLQYLY
>CP032659.1|AYG41861.1|2716836_2718354_+|glycerol-kinase
MTDKYIMAIDEGTTSTRAIIFDHAGHKVADSQREFPQYFPQPGWVEHNANEIWNAVLSTIANAFIESGIKPAQISGIGITNQRETTIVWDKKTGLPIHNAIVWQSRQTAPIAEQLVKDGHGDLIHKHTGLVTDAYFSATKIRWILDHVKGAQERAEKGELLFGTIDTWLVWKLTGGATHVTDYSNASRTMLYNIHKLEWDSEILQLLNIPAAMLPEVRTNSEIYGKTKDYHFFGSEVPISGMAGDQQAALFGQLAFEPGTVKNTYGTGAFIVMNTGEQPQLSDNNLLTTIGYGINGKVYYALEGSIFVAGSAIQWLRDGIRLVESAPDSERAARESHNENEVYVVPAFTGLGAPYWDSEARGSVFGLTRGTTREDFIKATLQALAYQTRDVIETMKKDSGIEIPVLKVDGGAARNDWLMQFQADILDTQIMRAANLETTALGAAFLAGLSVGYWKDLDELKASYKPGTSFKPEMGAAERTNLYDGWQAAVKATQVFKHIPYHAAK
>CP032659.1|AYG41862.1|2718368_2720198_+|type-1-glycerol-3-phosphate-oxidase
MAFSATTRQQNVERLQNETLDLLVIGGGITGAGVAIQATAMNMKTGLIDMQDFAEGTSSRSTKLVHGGIRYLKTFDVGVVADTVKERAVVQGIAPHIPKPDPMLLPIYNETGATFDLFSVKVAMDLYDKLAEVKDPKFTNYTLSKEEVLQREPQLSPKNLVGGGVYLDFRNNDARLVIENIKKAHENGGIMASHVKATGLLHDDDGHINGITAEDLFTGETFEIHARVVINTTGPWSDTIRKMDHGETYQSQMRPTKGVHLVVDAEKLPVPQPTYFDSGDQDGRMIFVVPRENKTYFGTTDTDYHGDLEHPTVTQEDVDYLLEIVNRRYPTAKITLDDIEASWAGLRPLIAANGSSDYNGGNSGKISDKSFKEVIKVVDQFENQEASREDVESVLNDLESSLAEDKLSPSAVSRGSSLTSSPDGLLTLAGGKITDYRKMAAGAMALVAKILADKFDAHFNEINSKNLPVSGGDIDPHNVDATIAFYAKQGTDNGLTNDEALRIANMYGSNAARVFSLIGKVEPTHGLSLAETISLRYALDEEMTLTPVDYLLRRTNHLLFMRDTLDDLKDGVIATMADYLGWDAATTKEQTDRLNQTIAESDLTALKQG
>CP032659.1|AYG41863.1|2720212_2720935_+|aquaporin-family-protein
MMKDPLALQLLGEFLGTFILILLGDGVVAGVTLNKSKAQNAGWVAITLGWGFAVTMGVYASSFMSPAHLNPAVSLGMAVAGKFPWAYVLPYSAAQIAGGIVGGLAVWLHYYPHWQATKDAGAILGIFSTGPGIRQYFWNFISEVIGTFVLVFGLLAFTKGQFTAGLNPIVVGILIIAIGLSLGGTTGYAINPARDLGPRIAHAVLPIANKGTSDWAYSWVPIAGPLVGGALGALLFNVLP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP032659_3	3.6\|279118\|32\|CP032659\|CRISPRCasFinder	279118-279149	32	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	25805-25836	5	0.844
CP032659_3	3.6\|279118\|32\|CP032659\|CRISPRCasFinder	279118-279149	32	NC_006936	Lactobacillus phage phiJL-1, complete genome	36448-36479	5	0.844
CP032659_3	3.6\|279118\|32\|CP032659\|CRISPRCasFinder	279118-279149	32	AY236756	Lactobacillus plantarum bacteriophage phiJL-1, complete genome	36448-36479	5	0.844
CP032659_3	3.7\|279179\|32\|CP032659\|CRISPRCasFinder	279179-279210	32	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	25805-25836	5	0.844
CP032659_3	3.7\|279179\|32\|CP032659\|CRISPRCasFinder	279179-279210	32	NC_006936	Lactobacillus phage phiJL-1, complete genome	36448-36479	5	0.844
CP032659_3	3.7\|279179\|32\|CP032659\|CRISPRCasFinder	279179-279210	32	AY236756	Lactobacillus plantarum bacteriophage phiJL-1, complete genome	36448-36479	5	0.844
CP032659_3	3.15\|278996\|33\|CP032659\|CRT,PILER-CR	278996-279028	33	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	342218-342250	5	0.848
CP032659_4	4.10\|2446984\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2446984-2447013	30	MG592603	Vibrio phage 1.238.A._10N.261.52.F10, partial genome	64608-64637	5	0.833
CP032659_4	4.10\|2446984\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2446984-2447013	30	MG592610	Vibrio phage 1.245.O._10N.261.54.C7, partial genome	65780-65809	5	0.833
CP032659_4	4.10\|2446984\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2446984-2447013	30	MG592604	Vibrio phage 1.238.B._10N.261.52.F10, partial genome	64600-64629	5	0.833
CP032659_4	4.11\|2447050\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447050-2447079	30	KX961631	Bacillus phage QCM11, complete genome	5017-5046	5	0.833
CP032659_1	1.2\|29938\|33\|CP032659\|CRISPRCasFinder,CRT	29938-29970	33	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	722945-722977	6	0.818
CP032659_1	1.19\|30977\|29\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30977-31005	29	MH319749	Marine virus AG-345-F15 Ga0172271_11 genomic sequence	13800-13828	6	0.793
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	196556-196587	6	0.812
CP032659_3	3.6\|279118\|32\|CP032659\|CRISPRCasFinder	279118-279149	32	NC_019489	Lactobacillus phage Sha1, complete genome	3815-3846	6	0.812
CP032659_3	3.7\|279179\|32\|CP032659\|CRISPRCasFinder	279179-279210	32	NC_019489	Lactobacillus phage Sha1, complete genome	3815-3846	6	0.812
CP032659_3	3.17\|279118\|33\|CP032659\|CRT,PILER-CR	279118-279150	33	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	25804-25836	6	0.818
CP032659_3	3.17\|279118\|33\|CP032659\|CRT,PILER-CR	279118-279150	33	NC_006936	Lactobacillus phage phiJL-1, complete genome	36447-36479	6	0.818
CP032659_3	3.17\|279118\|33\|CP032659\|CRT,PILER-CR	279118-279150	33	AY236756	Lactobacillus plantarum bacteriophage phiJL-1, complete genome	36447-36479	6	0.818
CP032659_3	3.18\|279179\|33\|CP032659\|CRT,PILER-CR	279179-279211	33	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	25804-25836	6	0.818
CP032659_3	3.18\|279179\|33\|CP032659\|CRT,PILER-CR	279179-279211	33	NC_006936	Lactobacillus phage phiJL-1, complete genome	36447-36479	6	0.818
CP032659_3	3.18\|279179\|33\|CP032659\|CRT,PILER-CR	279179-279211	33	AY236756	Lactobacillus plantarum bacteriophage phiJL-1, complete genome	36447-36479	6	0.818
CP032659_4	4.20\|2447644\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447644-2447673	30	NC_029065	Pseudomonas phage VCM genome assembly VCM, chromosome : 1	75027-75056	6	0.8
CP032659_4	4.21\|2447710\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447710-2447739	30	NC_019746	Gloeocapsa sp. PCC 7428 plasmid pGLO7428.01, complete sequence	103789-103818	6	0.8
CP032659_4	4.22\|2447776\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447776-2447805	30	NZ_CP043762	Paenibacillus sp. 37 plasmid pART37, complete sequence	4943-4972	6	0.8
CP032659_1	1.11\|30488\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30488-30520	33	NZ_CP040462	Enterococcus sp. M190262 plasmid pM190262, complete sequence	102958-102990	7	0.788
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	NZ_CP032344	Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence	72283-72314	7	0.781
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	70436-70467	7	0.781
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	NZ_CP033317	Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence	128653-128684	7	0.781
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	NZ_CP032350	Azospirillum brasilense strain MTCC4039 plasmid p5, complete sequence	144970-145001	7	0.781
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	NZ_CP012919	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence	111157-111188	7	0.781
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	KY092483	Streptomyces phage Bioscum, complete genome	9970-10001	7	0.781
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	MK305888	Streptomyces phage Austintatious, complete genome	9934-9965	7	0.781
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	NC_047792	Streptomyces phage Ididsumtinwong, complete genome	9970-10001	7	0.781
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	KY092481	Streptomyces phage PapayaSalad, complete genome	9940-9971	7	0.781
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	JX182371	Streptomyces phage SV1, complete genome	10176-10207	7	0.781
CP032659_3	3.12\|279484\|32\|CP032659\|CRISPRCasFinder	279484-279515	32	NZ_LR215040	Mycoplasma columborale strain NCTC10179 plasmid 2	11055-11086	7	0.781
CP032659_3	3.12\|279484\|32\|CP032659\|CRISPRCasFinder	279484-279515	32	CP033541	Acinetobacter pittii strain 2014S06-099 plasmid p2014S06-099-1, complete sequence	100457-100488	7	0.781
CP032659_3	3.12\|279484\|32\|CP032659\|CRISPRCasFinder	279484-279515	32	MK496719	Capybara microvirus Cap1_SP_131, complete genome	1705-1736	7	0.781
CP032659_3	3.12\|279484\|32\|CP032659\|CRISPRCasFinder	279484-279515	32	MG770379	Klebsiella virus vB_KpnM_KpS110, complete genome	4557-4588	7	0.781
CP032659_3	3.12\|279484\|32\|CP032659\|CRISPRCasFinder	279484-279515	32	MN478483	Klebsiella virus UPM 2146, complete genome	13284-13315	7	0.781
CP032659_3	3.15\|278996\|33\|CP032659\|CRT,PILER-CR	278996-279028	33	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	196555-196587	7	0.788
CP032659_3	3.17\|279118\|33\|CP032659\|CRT,PILER-CR	279118-279150	33	NC_019489	Lactobacillus phage Sha1, complete genome	3814-3846	7	0.788
CP032659_3	3.18\|279179\|33\|CP032659\|CRT,PILER-CR	279179-279211	33	NC_019489	Lactobacillus phage Sha1, complete genome	3814-3846	7	0.788
CP032659_3	3.23\|279484\|33\|CP032659\|CRT,PILER-CR	279484-279516	33	NZ_LR215040	Mycoplasma columborale strain NCTC10179 plasmid 2	11055-11087	7	0.788
CP032659_4	4.12\|2447116\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447116-2447145	30	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	302330-302359	7	0.767
CP032659_4	4.18\|2447512\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447512-2447541	30	NZ_CP039909	Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence	474637-474666	7	0.767
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	NZ_CP022365	Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence	71668-71699	8	0.75
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	NZ_CP035507	Haematobacter massiliensis strain OT1 plasmid pOT1-7, complete sequence	80563-80594	8	0.75
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	MT708549	Burkholderia phage Maja, complete genome	8229-8260	8	0.75
CP032659_3	3.8\|279240\|32\|CP032659\|CRISPRCasFinder	279240-279271	32	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	311369-311400	8	0.75
CP032659_3	3.9\|279301\|32\|CP032659\|CRISPRCasFinder	279301-279332	32	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	311369-311400	8	0.75
CP032659_3	3.10\|279362\|32\|CP032659\|CRISPRCasFinder	279362-279393	32	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	311369-311400	8	0.75
CP032659_3	3.14\|278934\|34\|CP032659\|CRT,PILER-CR	278934-278967	34	MN856007	Siphoviridae sp. isolate 414, complete genome	1006-1039	8	0.765
CP032659_3	3.23\|279484\|33\|CP032659\|CRT,PILER-CR	279484-279516	33	MK496719	Capybara microvirus Cap1_SP_131, complete genome	1705-1737	8	0.758
CP032659_4	4.10\|2446984\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2446984-2447013	30	LT598654	Phage NCTB genome assembly, complete genome: monopartite	116136-116165	8	0.733
CP032659_4	4.12\|2447116\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447116-2447145	30	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	124932-124961	8	0.733
CP032659_4	4.14\|2447248\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447248-2447277	30	NZ_CP031226	Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence	237679-237708	8	0.733
CP032659_5	5.1\|2708187\|29\|CP032659\|CRISPRCasFinder	2708187-2708215	29	NZ_CP013691	Myroides odoratimimus strain PR63039 plasmid p63039, complete sequence	70648-70676	8	0.724
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	309740-309772	9	0.727
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	322504-322536	9	0.727
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	322504-322536	9	0.727
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	591841-591873	9	0.727
CP032659_1	1.10\|30427\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30427-30459	33	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	109196-109228	9	0.727
CP032659_2	2.1\|278365\|32\|CP032659\|CRISPRCasFinder	278365-278396	32	NC_021727	Acinetobacter baumannii BJAB07104 plasmid p1BJAB07104, complete sequence	26947-26978	9	0.719
CP032659_2	2.1\|278365\|32\|CP032659\|CRISPRCasFinder	278365-278396	32	NZ_CP018422	Acinetobacter baumannii strain XDR-BJ83 isolate male patient plasmid pBJ83, complete sequence	54883-54914	9	0.719
CP032659_2	2.1\|278365\|32\|CP032659\|CRISPRCasFinder	278365-278396	32	NZ_CP018144	Acinetobacter baumannii strain HRAB-85 plasmid unnamed, complete sequence	22610-22641	9	0.719
CP032659_2	2.1\|278365\|32\|CP032659\|CRISPRCasFinder	278365-278396	32	NC_017848	Acinetobacter baumannii MDR-TJ plasmid pABTJ1, complete sequence	18975-19006	9	0.719
CP032659_2	2.1\|278365\|32\|CP032659\|CRISPRCasFinder	278365-278396	32	NZ_KM922672	Acinetobacter baumannii strain A221 plasmid pAZJ221, complete sequence	26947-26978	9	0.719
CP032659_2	2.1\|278365\|32\|CP032659\|CRISPRCasFinder	278365-278396	32	NC_021731	Acinetobacter baumannii BJAB0868 plasmid p2BJAB0868, complete sequence	26947-26978	9	0.719
CP032659_2	2.1\|278365\|32\|CP032659\|CRISPRCasFinder	278365-278396	32	NZ_MK386682	Acinetobacter baumannii strain ABAY10001 plasmid pABAY10001_1C, complete sequence	37764-37795	9	0.719
CP032659_2	2.3\|278487\|32\|CP032659\|CRISPRCasFinder	278487-278518	32	NC_018516	Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence	233273-233304	9	0.719
CP032659_2	2.3\|278487\|32\|CP032659\|CRISPRCasFinder	278487-278518	32	NZ_CP053970	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence	197173-197204	9	0.719
CP032659_2	2.3\|278487\|32\|CP032659\|CRISPRCasFinder	278487-278518	32	NZ_CP053979	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence	105385-105416	9	0.719
CP032659_2	2.3\|278487\|32\|CP032659\|CRISPRCasFinder	278487-278518	32	NZ_CP013277	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence	323707-323738	9	0.719
CP032659_2	2.3\|278487\|32\|CP032659\|CRISPRCasFinder	278487-278518	32	NZ_CP039723	Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence	91108-91139	9	0.719
CP032659_2	2.3\|278487\|32\|CP032659\|CRISPRCasFinder	278487-278518	32	NZ_CP009348	Bacillus thuringiensis HD1002 plasmid 2, complete sequence	323709-323740	9	0.719
CP032659_2	2.3\|278487\|32\|CP032659\|CRISPRCasFinder	278487-278518	32	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	167470-167501	9	0.719
CP032659_2	2.3\|278487\|32\|CP032659\|CRISPRCasFinder	278487-278518	32	NZ_CP045024	Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence	323319-323350	9	0.719
CP032659_3	3.1\|278774\|32\|CP032659\|CRISPRCasFinder	278774-278805	32	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	348461-348492	9	0.719
CP032659_3	3.12\|279484\|32\|CP032659\|CRISPRCasFinder	279484-279515	32	NC_031046	Staphylococcus phage BP39, complete genome	1707-1738	9	0.719
CP032659_4	4.2\|2446456\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2446456-2446485	30	NC_009926	Acaryochloris marina MBIC11017 plasmid pREB1, complete sequence	294452-294481	9	0.7
CP032659_4	4.12\|2447116\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447116-2447145	30	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	531636-531665	9	0.7
CP032659_4	4.12\|2447116\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447116-2447145	30	MN862068	Brevundimonas phage vB_BsubS-Delta, complete genome	21159-21188	9	0.7
CP032659_4	4.18\|2447512\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447512-2447541	30	NZ_CP015269	Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 2, complete sequence	86232-86261	9	0.7
CP032659_4	4.18\|2447512\|30\|CP032659\|PILER-CR,CRISPRCasFinder,CRT	2447512-2447541	30	NC_022995	Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence	253751-253780	9	0.7
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	355053-355085	10	0.697
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	309681-309713	10	0.697
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	329136-329168	10	0.697
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	315926-315958	10	0.697
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	324101-324133	10	0.697
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	329136-329168	10	0.697
CP032659_1	1.9\|30366\|33\|CP032659\|CRISPRCasFinder,CRT,PILER-CR	30366-30398	33	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	309681-309713	10	0.697
CP032659_3	3.5\|279057\|32\|CP032659\|CRISPRCasFinder	279057-279088	32	CAJCJZ010000002	Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence	7487-7518	10	0.688
CP032659_3	3.5\|279057\|32\|CP032659\|CRISPRCasFinder	279057-279088	32	MT119360	Enterococcus phage nattely, complete genome	77710-77741	10	0.688
CP032659_3	3.12\|279484\|32\|CP032659\|CRISPRCasFinder	279484-279515	32	NC_048677	Lactobacillus phage LpeD, complete genome	131509-131540	10	0.688
CP032659_3	3.12\|279484\|32\|CP032659\|CRISPRCasFinder	279484-279515	32	MT774376	CrAssphage cr55_1, complete genome	42192-42223	10	0.688
CP032659_3	3.12\|279484\|32\|CP032659\|CRISPRCasFinder	279484-279515	32	MT774380	CrAssphage cr1_1, complete genome	45960-45991	10	0.688
CP032659_3	3.16\|279057\|33\|CP032659\|CRT,PILER-CR	279057-279089	33	MT119360	Enterococcus phage nattely, complete genome	77710-77742	11	0.667
CP032659_3	3.16\|279057\|33\|CP032659\|CRT,PILER-CR	279057-279089	33	CAJCJZ010000002	Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence	7486-7518	11	0.667
CP032659_3	3.4\|278996\|32\|CP032659\|CRISPRCasFinder	278996-279027	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	342219-342250	18	0.438

1. spacer 3.6|279118|32|CP032659|CRISPRCasFinder matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.844

cttaccaattagcccacagcgattaccgtatc	CRISPR spacer
cttaccaattagcccacagcgattaccagtct	Protospacer
***************************.  ..

2. spacer 3.6|279118|32|CP032659|CRISPRCasFinder matches to NC_006936 (Lactobacillus phage phiJL-1, complete genome) position: , mismatch: 5, identity: 0.844

cttaccaattagcccacagcgattaccgtatc	CRISPR spacer
cttaccaattagcccacagcgataaccgatct	Protospacer
*********************** ****  ..

3. spacer 3.6|279118|32|CP032659|CRISPRCasFinder matches to AY236756 (Lactobacillus plantarum bacteriophage phiJL-1, complete genome) position: , mismatch: 5, identity: 0.844

cttaccaattagcccacagcgattaccgtatc	CRISPR spacer
cttaccaattagcccacagcgataaccgatct	Protospacer
*********************** ****  ..

4. spacer 3.7|279179|32|CP032659|CRISPRCasFinder matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.844

cttaccaattagcccacagcgattaccgtatc	CRISPR spacer
cttaccaattagcccacagcgattaccagtct	Protospacer
***************************.  ..

5. spacer 3.7|279179|32|CP032659|CRISPRCasFinder matches to NC_006936 (Lactobacillus phage phiJL-1, complete genome) position: , mismatch: 5, identity: 0.844

cttaccaattagcccacagcgattaccgtatc	CRISPR spacer
cttaccaattagcccacagcgataaccgatct	Protospacer
*********************** ****  ..

6. spacer 3.7|279179|32|CP032659|CRISPRCasFinder matches to AY236756 (Lactobacillus plantarum bacteriophage phiJL-1, complete genome) position: , mismatch: 5, identity: 0.844

cttaccaattagcccacagcgattaccgtatc	CRISPR spacer
cttaccaattagcccacagcgataaccgatct	Protospacer
*********************** ****  ..

7. spacer 3.15|278996|33|CP032659|CRT,PILER-CR matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.848

gccccgat--gtcatcgagggcggcgcccccagcg	CRISPR spacer
--accgattggtcatcgaggggggcgccgccagcg	Protospacer
   *****  *********** ****** ******

8. spacer 4.10|2446984|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to MG592603 (Vibrio phage 1.238.A._10N.261.52.F10, partial genome) position: , mismatch: 5, identity: 0.833

aataagccttttaatgccttgctcagggca	CRISPR spacer
agtaagccttttagtgtcttgctcaggacg	Protospacer
*.***********.**.**********.*.

9. spacer 4.10|2446984|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to MG592610 (Vibrio phage 1.245.O._10N.261.54.C7, partial genome) position: , mismatch: 5, identity: 0.833

aataagccttttaatgccttgctcagggca	CRISPR spacer
agtaagccttttagtgtcttgctcaggacg	Protospacer
*.***********.**.**********.*.

10. spacer 4.10|2446984|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to MG592604 (Vibrio phage 1.238.B._10N.261.52.F10, partial genome) position: , mismatch: 5, identity: 0.833

aataagccttttaatgccttgctcagggca	CRISPR spacer
agtaagccttttagtgtcttgctcaggacg	Protospacer
*.***********.**.**********.*.

11. spacer 4.11|2447050|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to KX961631 (Bacillus phage QCM11, complete genome) position: , mismatch: 5, identity: 0.833

cagcaatgtgaatcgaatcagtgtcacaat	CRISPR spacer
cagttaaatgaatcgagtcagtgtcacaat	Protospacer
***. * .********.*************

12. spacer 1.2|29938|33|CP032659|CRISPRCasFinder,CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 6, identity: 0.818

ctttagcagtctgggccgctcgcccctgggcgg--	CRISPR spacer
gttcagcagtctgcgccgctcgccc--gggccggt	Protospacer
 **.********* ***********  **** *

13. spacer 1.19|30977|29|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to MH319749 (Marine virus AG-345-F15 Ga0172271_11 genomic sequence) position: , mismatch: 6, identity: 0.793

caatcattatgctagtgatactagcagca	CRISPR spacer
agataattatgctagtgatactaggacaa	Protospacer
 .** ******************* *  *

14. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 6, identity: 0.812

gccccgatgtcatcgagggcggcgcccccagc	CRISPR spacer
gcgccgatgtcatcgagggccgcgcggccgcc	Protospacer
** ***************** ****  **. *

15. spacer 3.6|279118|32|CP032659|CRISPRCasFinder matches to NC_019489 (Lactobacillus phage Sha1, complete genome) position: , mismatch: 6, identity: 0.812

cttaccaattagcccacagcgattaccgtatc	CRISPR spacer
cttgccaattagcccacagcgattaccagtct	Protospacer
***.***********************.  ..

16. spacer 3.7|279179|32|CP032659|CRISPRCasFinder matches to NC_019489 (Lactobacillus phage Sha1, complete genome) position: , mismatch: 6, identity: 0.812

cttaccaattagcccacagcgattaccgtatc	CRISPR spacer
cttgccaattagcccacagcgattaccagtct	Protospacer
***.***********************.  ..

17. spacer 3.17|279118|33|CP032659|CRT,PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.818

cttaccaattagcccacagcgattaccgtatca	CRISPR spacer
cttaccaattagcccacagcgattaccagtctg	Protospacer
***************************.  ...

18. spacer 3.17|279118|33|CP032659|CRT,PILER-CR matches to NC_006936 (Lactobacillus phage phiJL-1, complete genome) position: , mismatch: 6, identity: 0.818

cttaccaattagcccacagcgattaccgtatca	CRISPR spacer
cttaccaattagcccacagcgataaccgatctg	Protospacer
*********************** ****  ...

19. spacer 3.17|279118|33|CP032659|CRT,PILER-CR matches to AY236756 (Lactobacillus plantarum bacteriophage phiJL-1, complete genome) position: , mismatch: 6, identity: 0.818

cttaccaattagcccacagcgattaccgtatca	CRISPR spacer
cttaccaattagcccacagcgataaccgatctg	Protospacer
*********************** ****  ...

20. spacer 3.18|279179|33|CP032659|CRT,PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.818

cttaccaattagcccacagcgattaccgtatca	CRISPR spacer
cttaccaattagcccacagcgattaccagtctg	Protospacer
***************************.  ...

21. spacer 3.18|279179|33|CP032659|CRT,PILER-CR matches to NC_006936 (Lactobacillus phage phiJL-1, complete genome) position: , mismatch: 6, identity: 0.818

cttaccaattagcccacagcgattaccgtatca	CRISPR spacer
cttaccaattagcccacagcgataaccgatctg	Protospacer
*********************** ****  ...

22. spacer 3.18|279179|33|CP032659|CRT,PILER-CR matches to AY236756 (Lactobacillus plantarum bacteriophage phiJL-1, complete genome) position: , mismatch: 6, identity: 0.818

cttaccaattagcccacagcgattaccgtatca	CRISPR spacer
cttaccaattagcccacagcgataaccgatctg	Protospacer
*********************** ****  ...

23. spacer 4.20|2447644|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NC_029065 (Pseudomonas phage VCM genome assembly VCM, chromosome : 1) position: , mismatch: 6, identity: 0.8

atggctaaactgaacaaaacacagacgtat-	CRISPR spacer
atggctaaactgaccaaagcaca-acgcgag	Protospacer
************* ****.**** ***..

24. spacer 4.21|2447710|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NC_019746 (Gloeocapsa sp. PCC 7428 plasmid pGLO7428.01, complete sequence) position: , mismatch: 6, identity: 0.8

-gttataccgtctaaatacccgcaacactca	CRISPR spacer
tgtta-accgtataaatacccgcaacaaagc	Protospacer
 **** ***** ***************

25. spacer 4.22|2447776|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 6, identity: 0.8

caacttgaagaaactagttaagaacatccg	CRISPR spacer
tatcttgaagaaactaactaagaacagtcg	Protospacer
.* *************..******** .**

26. spacer 1.11|30488|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040462 (Enterococcus sp. M190262 plasmid pM190262, complete sequence) position: , mismatch: 7, identity: 0.788

taagtttaggggcgcaggttcgaggcctgcaag	CRISPR spacer
taaccgtccggtcgcaggttcgagtcctgcaag	Protospacer
*** . *  ** ************ ********

27. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to NZ_CP032344 (Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

gccccgatgtcatcgagggcggcgcccccagc	CRISPR spacer
aggccgacgtcatcgagggcggcgccggcaac	Protospacer
.  ****.******************  **.*

28. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

gccccgatgtcatcgagggcggcgcccccagc	CRISPR spacer
aggccgacgtcatcgagggcggcgccggcaac	Protospacer
.  ****.******************  **.*

29. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to NZ_CP033317 (Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

gccccgatgtcatcgagggcggcgcccccagc	CRISPR spacer
aggccgacgtcatcgagggcggcgccggcaac	Protospacer
.  ****.******************  **.*

30. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to NZ_CP032350 (Azospirillum brasilense strain MTCC4039 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

gccccgatgtcatcgagggcggcgcccccagc	CRISPR spacer
aggccgacgtcatcgagggcggcgccggcaac	Protospacer
.  ****.******************  **.*

31. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to NZ_CP012919 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence) position: , mismatch: 7, identity: 0.781

gccccgatgtcatcgagggcggcgcccccagc	CRISPR spacer
aggccgacgtcatcgagggcggcgccggcaac	Protospacer
.  ****.******************  **.*

32. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to KY092483 (Streptomyces phage Bioscum, complete genome) position: , mismatch: 7, identity: 0.781

gccccgatgtcatcgagggcggcgcccccagc--	CRISPR spacer
tcgccgagggcatcgagggcggcg--ccgagcag	Protospacer
 * **** * **************  ** ***

33. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to MK305888 (Streptomyces phage Austintatious, complete genome) position: , mismatch: 7, identity: 0.781

gccccgatgtcatcgagggcggcgcccccagc--	CRISPR spacer
tcgccgagggcatcgagggcggcg--ccgagcag	Protospacer
 * **** * **************  ** ***

34. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to NC_047792 (Streptomyces phage Ididsumtinwong, complete genome) position: , mismatch: 7, identity: 0.781

gccccgatgtcatcgagggcggcgcccccagc--	CRISPR spacer
tcgccgagggcatcgagggcggcg--ccgagcag	Protospacer
 * **** * **************  ** ***

35. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to KY092481 (Streptomyces phage PapayaSalad, complete genome) position: , mismatch: 7, identity: 0.781

gccccgatgtcatcgagggcggcgcccccagc--	CRISPR spacer
tcgccgagggcatcgagggcggcg--ccgagcag	Protospacer
 * **** * **************  ** ***

36. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to JX182371 (Streptomyces phage SV1, complete genome) position: , mismatch: 7, identity: 0.781

gccccgatgtcatcgagggcggcgcccccagc--	CRISPR spacer
tcgccgagggcatcgagggcggcg--ccgagcag	Protospacer
 * **** * **************  ** ***

37. spacer 3.12|279484|32|CP032659|CRISPRCasFinder matches to NZ_LR215040 (Mycoplasma columborale strain NCTC10179 plasmid 2) position: , mismatch: 7, identity: 0.781

tacaattaattcagttgatttaattgatggat	CRISPR spacer
aagaattgattcacttgatttaattgatgcta	Protospacer
 * ****.***** ***************

38. spacer 3.12|279484|32|CP032659|CRISPRCasFinder matches to CP033541 (Acinetobacter pittii strain 2014S06-099 plasmid p2014S06-099-1, complete sequence) position: , mismatch: 7, identity: 0.781

tacaattaattcagttgatttaattgatggat	CRISPR spacer
ttcaattaattcagttgctttaattacttagt	Protospacer
* *************** *******. * ..*

39. spacer 3.12|279484|32|CP032659|CRISPRCasFinder matches to MK496719 (Capybara microvirus Cap1_SP_131, complete genome) position: , mismatch: 7, identity: 0.781

tacaattaattcagttgatttaattgatggat	CRISPR spacer
cacaattaattcatttgaattaattcgtttat	Protospacer
.************ **** ****** .*  **

40. spacer 3.12|279484|32|CP032659|CRISPRCasFinder matches to MG770379 (Klebsiella virus vB_KpnM_KpS110, complete genome) position: , mismatch: 7, identity: 0.781

tacaattaattcagttgattt-aattgatggat	CRISPR spacer
tacaaatcattcagttgatttaaactaattaa-	Protospacer
***** * ************* **.*.** .*

41. spacer 3.12|279484|32|CP032659|CRISPRCasFinder matches to MN478483 (Klebsiella virus UPM 2146, complete genome) position: , mismatch: 7, identity: 0.781

tacaattaattcagttgattt-aattgatggat	CRISPR spacer
tacaaatcattcagttgatttaaactaattaa-	Protospacer
***** * ************* **.*.** .*

42. spacer 3.15|278996|33|CP032659|CRT,PILER-CR matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 7, identity: 0.788

gccccgatgtcatcgagggcggcgcccccagcg	CRISPR spacer
gcgccgatgtcatcgagggccgcgcggccgcct	Protospacer
** ***************** ****  **. *

43. spacer 3.17|279118|33|CP032659|CRT,PILER-CR matches to NC_019489 (Lactobacillus phage Sha1, complete genome) position: , mismatch: 7, identity: 0.788

cttaccaattagcccacagcgattaccgtatca	CRISPR spacer
cttgccaattagcccacagcgattaccagtctg	Protospacer
***.***********************.  ...

44. spacer 3.18|279179|33|CP032659|CRT,PILER-CR matches to NC_019489 (Lactobacillus phage Sha1, complete genome) position: , mismatch: 7, identity: 0.788

cttaccaattagcccacagcgattaccgtatca	CRISPR spacer
cttgccaattagcccacagcgattaccagtctg	Protospacer
***.***********************.  ...

45. spacer 3.23|279484|33|CP032659|CRT,PILER-CR matches to NZ_LR215040 (Mycoplasma columborale strain NCTC10179 plasmid 2) position: , mismatch: 7, identity: 0.788

tacaattaattcagttgatttaattgatggata	CRISPR spacer
aagaattgattcacttgatttaattgatgctaa	Protospacer
 * ****.***** ***************   *

46. spacer 4.12|2447116|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.767

gggatgtcggtcagggtggtgaagaaacca	CRISPR spacer
aggatgtcggtcaggatgttgaagaagatc	Protospacer
.**************.** *******. .

47. spacer 4.18|2447512|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039909 (Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence) position: , mismatch: 7, identity: 0.767

attctggcgccggtggttggccggtgatcc	CRISPR spacer
attctggcgcgggtggttggcaaggactgc	Protospacer
********** ********** .* . * *

48. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to NZ_CP022365 (Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence) position: , mismatch: 8, identity: 0.75

gccccgatgtcatcgagggcggcgcccccagc	CRISPR spacer
aggccgacgtcatccagggcggcgccggcaac	Protospacer
.  ****.****** ***********  **.*

49. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to NZ_CP035507 (Haematobacter massiliensis strain OT1 plasmid pOT1-7, complete sequence) position: , mismatch: 8, identity: 0.75

gccccgatgtcatcgagggcggcgcccccagc----	CRISPR spacer
gccgcgatgtcgtcgagggcgg----cctggctgcg	Protospacer
*** *******.**********    **..**

50. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to MT708549 (Burkholderia phage Maja, complete genome) position: , mismatch: 8, identity: 0.75

gccccgatgtcatcgagggcggcgcccccagc	CRISPR spacer
gccccgaagtcatcgtgggcggctcgaacttc	Protospacer
******* ******* ******* *   *  *

51. spacer 3.8|279240|32|CP032659|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 8, identity: 0.75

tcgtgacggagtttgacttcgatggataacga-	CRISPR spacer
gtgtgatggagtttgccttcgatgg-tgatgtc	Protospacer
 .****.******** ********* *.*.*

52. spacer 3.9|279301|32|CP032659|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 8, identity: 0.75

tcgtgacggagtttgacttcgatggataacga-	CRISPR spacer
gtgtgatggagtttgccttcgatgg-tgatgtc	Protospacer
 .****.******** ********* *.*.*

53. spacer 3.10|279362|32|CP032659|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 8, identity: 0.75

tcgtgacggagtttgacttcgatggataacga-	CRISPR spacer
gtgtgatggagtttgccttcgatgg-tgatgtc	Protospacer
 .****.******** ********* *.*.*

54. spacer 3.14|278934|34|CP032659|CRT,PILER-CR matches to MN856007 (Siphoviridae sp. isolate 414, complete genome) position: , mismatch: 8, identity: 0.765

---ctatcaaactcatctcatagcctctcaatcatca	CRISPR spacer
tttccttcga---catctcataacctctcaatcgtca	Protospacer
   *. **.*   *********.**********.***

55. spacer 3.23|279484|33|CP032659|CRT,PILER-CR matches to MK496719 (Capybara microvirus Cap1_SP_131, complete genome) position: , mismatch: 8, identity: 0.758

tacaattaattcagttgatttaattgatggata	CRISPR spacer
cacaattaattcatttgaattaattcgtttatg	Protospacer
.************ **** ****** .*  **.

56. spacer 4.10|2446984|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to LT598654 (Phage NCTB genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.733

aataagccttttaatgccttgctcagggca	CRISPR spacer
gttaagcctttaaatgcctggctcatccta	Protospacer
. ********* ******* *****   .*

57. spacer 4.12|2447116|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.733

gggatgtcggtcagggtggtgaagaaacca	CRISPR spacer
agagcctcggtcaggatggtgaggaaaccg	Protospacer
.*... *********.******.******.

58. spacer 4.14|2447248|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031226 (Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence) position: , mismatch: 8, identity: 0.733

agcataccctggttgattgctcagtgtgtc	CRISPR spacer
cttaacgcctggttgattgctcagtctgtg	Protospacer
  .*   ****************** ***

59. spacer 5.1|2708187|29|CP032659|CRISPRCasFinder matches to NZ_CP013691 (Myroides odoratimimus strain PR63039 plasmid p63039, complete sequence) position: , mismatch: 8, identity: 0.724

tgggtagccagtgaagctaatacaatcag	CRISPR spacer
gttttagccattgaagctaatacaatact	Protospacer
    ****** ***************

60. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 9, identity: 0.727

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaactg	Protospacer
.*** ***** ***************.  . *.

61. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 9, identity: 0.727

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaactg	Protospacer
.*** ***** ***************.  . *.

62. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 9, identity: 0.727

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaactg	Protospacer
.*** ***** ***************.  . *.

63. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 9, identity: 0.727

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaactg	Protospacer
.*** ***** ***************.  . *.

64. spacer 1.10|30427|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 9, identity: 0.727

aatgcttctgccaatcgttcggcactcgccacg	CRISPR spacer
cccgcctctgccaatcgttcggcgctccgtccg	Protospacer
  .**.*****************.***  . **

65. spacer 2.1|278365|32|CP032659|CRISPRCasFinder matches to NC_021727 (Acinetobacter baumannii BJAB07104 plasmid p1BJAB07104, complete sequence) position: , mismatch: 9, identity: 0.719

actagcgtagaaatttcggttagtcacattgg	CRISPR spacer
cttagcttagaaatttcggttaatcgctctaa	Protospacer
 .**** ***************.**.* .*..

66. spacer 2.1|278365|32|CP032659|CRISPRCasFinder matches to NZ_CP018422 (Acinetobacter baumannii strain XDR-BJ83 isolate male patient plasmid pBJ83, complete sequence) position: , mismatch: 9, identity: 0.719

actagcgtagaaatttcggttagtcacattgg	CRISPR spacer
cttagcttagaaatttcggttaatcgctctaa	Protospacer
 .**** ***************.**.* .*..

67. spacer 2.1|278365|32|CP032659|CRISPRCasFinder matches to NZ_CP018144 (Acinetobacter baumannii strain HRAB-85 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

actagcgtagaaatttcggttagtcacattgg	CRISPR spacer
cttagcttagaaatttcggttaatcgctctaa	Protospacer
 .**** ***************.**.* .*..

68. spacer 2.1|278365|32|CP032659|CRISPRCasFinder matches to NC_017848 (Acinetobacter baumannii MDR-TJ plasmid pABTJ1, complete sequence) position: , mismatch: 9, identity: 0.719

actagcgtagaaatttcggttagtcacattgg	CRISPR spacer
cttagcttagaaatttcggttaatcgctctaa	Protospacer
 .**** ***************.**.* .*..

69. spacer 2.1|278365|32|CP032659|CRISPRCasFinder matches to NZ_KM922672 (Acinetobacter baumannii strain A221 plasmid pAZJ221, complete sequence) position: , mismatch: 9, identity: 0.719

actagcgtagaaatttcggttagtcacattgg	CRISPR spacer
cttagcttagaaatttcggttaatcgctctaa	Protospacer
 .**** ***************.**.* .*..

70. spacer 2.1|278365|32|CP032659|CRISPRCasFinder matches to NC_021731 (Acinetobacter baumannii BJAB0868 plasmid p2BJAB0868, complete sequence) position: , mismatch: 9, identity: 0.719

actagcgtagaaatttcggttagtcacattgg	CRISPR spacer
cttagcttagaaatttcggttaatcgctctaa	Protospacer
 .**** ***************.**.* .*..

71. spacer 2.1|278365|32|CP032659|CRISPRCasFinder matches to NZ_MK386682 (Acinetobacter baumannii strain ABAY10001 plasmid pABAY10001_1C, complete sequence) position: , mismatch: 9, identity: 0.719

actagcgtagaaatttcggttagtcacattgg	CRISPR spacer
cttagcttagaaatttcggttaatcgctctaa	Protospacer
 .**** ***************.**.* .*..

72. spacer 2.3|278487|32|CP032659|CRISPRCasFinder matches to NC_018516 (Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence) position: , mismatch: 9, identity: 0.719

tgacagcactaaacgaaaagtcagaagtgaca	CRISPR spacer
caaaagcactaaacgaaaaattagaagaaatc	Protospacer
..* ***************.*.***** .*.

73. spacer 2.3|278487|32|CP032659|CRISPRCasFinder matches to NZ_CP053970 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacagcactaaacgaaaagtcagaagtgaca	CRISPR spacer
caaaagcactaaacgaaaaattagaagaaatc	Protospacer
..* ***************.*.***** .*.

74. spacer 2.3|278487|32|CP032659|CRISPRCasFinder matches to NZ_CP053979 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tgacagcactaaacgaaaagtcagaagtgaca	CRISPR spacer
caaaagcactaaacgaaaaattagaagaaatc	Protospacer
..* ***************.*.***** .*.

75. spacer 2.3|278487|32|CP032659|CRISPRCasFinder matches to NZ_CP013277 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence) position: , mismatch: 9, identity: 0.719

tgacagcactaaacgaaaagtcagaagtgaca	CRISPR spacer
caaaagcactaaacgaaaaattagaagaaatc	Protospacer
..* ***************.*.***** .*.

76. spacer 2.3|278487|32|CP032659|CRISPRCasFinder matches to NZ_CP039723 (Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacagcactaaacgaaaagtcagaagtgaca	CRISPR spacer
caaaagcactaaacgaaaaattagaagaaatc	Protospacer
..* ***************.*.***** .*.

77. spacer 2.3|278487|32|CP032659|CRISPRCasFinder matches to NZ_CP009348 (Bacillus thuringiensis HD1002 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacagcactaaacgaaaagtcagaagtgaca	CRISPR spacer
caaaagcactaaacgaaaaattagaagaaatc	Protospacer
..* ***************.*.***** .*.

78. spacer 2.3|278487|32|CP032659|CRISPRCasFinder matches to NZ_CP009334 (Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacagcactaaacgaaaagtcagaagtgaca	CRISPR spacer
caaaagcactaaacgaaaaattagaagaaatc	Protospacer
..* ***************.*.***** .*.

79. spacer 2.3|278487|32|CP032659|CRISPRCasFinder matches to NZ_CP045024 (Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacagcactaaacgaaaagtcagaagtgaca	CRISPR spacer
caaaagcactaaacgaaaaattagaagaaatc	Protospacer
..* ***************.*.***** .*.

80. spacer 3.1|278774|32|CP032659|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 9, identity: 0.719

agtacgttgtccactttcaatgtattcggcat	CRISPR spacer
ccgcccctgtccactgtcaatgttttcggcaa	Protospacer
    * .******** ******* *******

81. spacer 3.12|279484|32|CP032659|CRISPRCasFinder matches to NC_031046 (Staphylococcus phage BP39, complete genome) position: , mismatch: 9, identity: 0.719

tacaattaattcagttgatttaattgatggat	CRISPR spacer
aacatttaattcagttgatttaatcaactata	Protospacer
 *** *******************..*. .

82. spacer 4.2|2446456|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NC_009926 (Acaryochloris marina MBIC11017 plasmid pREB1, complete sequence) position: , mismatch: 9, identity: 0.7

tattttctatgcgctgaaattcttttaggt	CRISPR spacer
atcaggttatgcaatgaaattcttttaggt	Protospacer
  .   .*****. ****************

83. spacer 4.12|2447116|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 9, identity: 0.7

gggatgtcggtcagggtggtgaagaaacca	CRISPR spacer
tcgatgtcggtcagggtgctgaaggcctgg	Protospacer
  **************** *****.  . .

84. spacer 4.12|2447116|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to MN862068 (Brevundimonas phage vB_BsubS-Delta, complete genome) position: , mismatch: 9, identity: 0.7

gggatgtcggtcagggtggtgaagaaacca	CRISPR spacer
ccgatgtcggtcagggcggtggagatggag	Protospacer
  **************.****.*** .  .

85. spacer 4.18|2447512|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015269 (Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 2, complete sequence) position: , mismatch: 9, identity: 0.7

attctggcgccggtggttggccggtgatcc	CRISPR spacer
gtactggcgccggtgattggccggcaccgt	Protospacer
.* ************.********.. . .

86. spacer 4.18|2447512|30|CP032659|PILER-CR,CRISPRCasFinder,CRT matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 9, identity: 0.7

attctggcgccggtggttggccggtgatcc	CRISPR spacer
gagctggcgcaggtggttggccgctggagt	Protospacer
.  ******* ************ **.  .

87. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 10, identity: 0.697

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaaccg	Protospacer
.*** ***** ***************.  . ..

88. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 10, identity: 0.697

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaaccg	Protospacer
.*** ***** ***************.  . ..

89. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 10, identity: 0.697

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaaccg	Protospacer
.*** ***** ***************.  . ..

90. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 10, identity: 0.697

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaaccg	Protospacer
.*** ***** ***************.  . ..

91. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 10, identity: 0.697

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaaccg	Protospacer
.*** ***** ***************.  . ..

92. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 10, identity: 0.697

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaaccg	Protospacer
.*** ***** ***************.  . ..

93. spacer 1.9|30366|33|CP032659|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 10, identity: 0.697

accgggccaaaacgatgagcggcgccactgata	CRISPR spacer
gccgcgccaacacgatgagcggcgccgaaaccg	Protospacer
.*** ***** ***************.  . ..

94. spacer 3.5|279057|32|CP032659|CRISPRCasFinder matches to CAJCJZ010000002 (Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence) position: , mismatch: 10, identity: 0.688

ccctcatctgttccgtcttcgttttcgccatc	CRISPR spacer
ggacggaatgcttcgtcttcgttttcgccatc	Protospacer
   . .  **.*.*******************

95. spacer 3.5|279057|32|CP032659|CRISPRCasFinder matches to MT119360 (Enterococcus phage nattely, complete genome) position: , mismatch: 10, identity: 0.688

ccctcatctgttccgtcttcgttttcgccatc	CRISPR spacer
ggacggaatgcttcgtcttcgttttcgccatc	Protospacer
   . .  **.*.*******************

96. spacer 3.12|279484|32|CP032659|CRISPRCasFinder matches to NC_048677 (Lactobacillus phage LpeD, complete genome) position: , mismatch: 10, identity: 0.688

tacaattaattcagttgatttaattgatggat	CRISPR spacer
aaggattaagtcaattgatttaattgacctta	Protospacer
 * .***** ***.*************.

97. spacer 3.12|279484|32|CP032659|CRISPRCasFinder matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 10, identity: 0.688

tacaattaattcagttgatttaattgatggat	CRISPR spacer
ttcaataatttcagttgatttaattttcttca	Protospacer
* **** * ****************  .

98. spacer 3.12|279484|32|CP032659|CRISPRCasFinder matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 10, identity: 0.688

tacaattaattcagttgatttaattgatggat	CRISPR spacer
ttcaataatttcagttgatttaattttcttca	Protospacer
* **** * ****************  .

99. spacer 3.16|279057|33|CP032659|CRT,PILER-CR matches to MT119360 (Enterococcus phage nattely, complete genome) position: , mismatch: 11, identity: 0.667

ccctcatctgttccgtcttcgttttcgccatcg	CRISPR spacer
ggacggaatgcttcgtcttcgttttcgccatct	Protospacer
   . .  **.*.*******************

100. spacer 3.16|279057|33|CP032659|CRT,PILER-CR matches to CAJCJZ010000002 (Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence) position: , mismatch: 11, identity: 0.667

ccctcatctgttccgtcttcgttttcgccatcg	CRISPR spacer
ggacggaatgcttcgtcttcgttttcgccatct	Protospacer
   . .  **.*.*******************

101. spacer 3.4|278996|32|CP032659|CRISPRCasFinder matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 18, identity: 0.438

gccccgatgtcatcgagggcggcgcccccagc--------------	CRISPR spacer
--------------gctggcggcgcccccctcgatgaccaatcggt	Protospacer
              *  ************  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

681 : 73352

Staphylococcus_phage(30.0%)

tRNA,transposase,integrase,protease

attL 106:117|attR 65306:65317

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
106:117	attL	NA	NA	NA	NA
AYG39616.1\|681_1233_+\|integrase	integrase	A0A1B0T6D2	Bacillus_phage	4.6e-29	42.8
AYG39617.1\|1412_2348_+	phosphatase	B0FIJ9	Escherichia_phage	3.1e-30	47.1
AYG39618.1\|2322_3396_+	DUF4433 domain-containing protein	NA	NA	NA	NA
AYG39619.1\|3512_5735_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	3.6e-125	40.1
AYG39620.1\|6214_6412_+	hypothetical protein	NA	NA	NA	NA
AYG39621.1\|6561_6828_+	phosphocarrier protein HPr	NA	NA	NA	NA
AYG39622.1\|6827_8558_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
AYG39623.1\|10217_11396_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
AYG39624.1\|11448_12471_+	glycosyltransferase	NA	NA	NA	NA
AYG39625.1\|12474_13524_+	TIGR00374 family protein	NA	NA	NA	NA
AYG39626.1\|13594_14836_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	6.2e-18	29.6
AYG39627.1\|14956_16144_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
AYG39628.1\|16336_16573_+	DUF1797 family protein	NA	NA	NA	NA
AYG39629.1\|16729_18835_+	LTA synthase family protein	W6LM83	Streptococcus_phage	1.8e-158	48.1
AYG39630.1\|18993_20256_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
AYG39631.1\|27424_28687_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
AYG39632.1\|28838_29048_+	hypothetical protein	NA	NA	NA	NA
AYG39633.1\|29118_29604_+	hypothetical protein	NA	NA	NA	NA
AYG39634.1\|31400_31958_-	adenine phosphoribosyltransferase	NA	NA	NA	NA
AYG39635.1\|33004_33523_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYG39636.1\|33637_34474_-	metallophosphoesterase	NA	NA	NA	NA
AYG39637.1\|34866_35739_+	AraC family transcriptional regulator	NA	NA	NA	NA
AYG39638.1\|36028_36919_+	alpha/beta hydrolase	A0A167RJ59	Powai_lake_megavirus	2.4e-11	33.3
AYG39639.1\|36931_38146_+	MFS transporter	NA	NA	NA	NA
AYG39640.1\|38138_39041_+	ROK family protein	NA	NA	NA	NA
AYG39641.1\|39383_40709_-	divalent metal cation transporter MntH	NA	NA	NA	NA
AYG39642.1\|40695_41655_-	ferrochelatase	NA	NA	NA	NA
AYG39643.1\|42215_43607_-	amino acid permease	NA	NA	NA	NA
AYG39644.1\|43720_44635_+	homocysteine S-methyltransferase	NA	NA	NA	NA
AYG39645.1\|45229_46738_+	glycosyltransferase	NA	NA	NA	NA
AYG39646.1\|46804_47524_-	hypothetical protein	NA	NA	NA	NA
AYG39647.1\|47734_48922_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	6.6e-142	66.7
AYG39648.1\|49057_50566_+	MFS transporter	NA	NA	NA	NA
AYG39649.1\|60166_61018_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	2.8e-41	44.7
AYG39650.1\|61020_61560_-\|transposase	transposase	NA	NA	NA	NA
AYG39651.1\|64008_65643_+	glycosyl transferase family 1	NA	NA	NA	NA
65306:65317	attR	NA	NA	NA	NA
AYG39652.1\|67189_68716_+	glycosyltransferase	NA	NA	NA	NA
AYG39653.1\|68744_68942_+	hypothetical protein	NA	NA	NA	NA
AYG39654.1\|69197_69782_-	SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	5.9e-35	46.0
AYG39655.1\|69794_70445_-	phosphatase PAP2 family protein	NA	NA	NA	NA
AYG39656.1\|70925_73352_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	68.4

DBSCAN-SWA_2

164774 : 174025

Lactobacillus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG39720.1\|164774_165935_+	hypothetical protein	A0A2P0ZL72	Lactobacillus_phage	1.8e-131	61.3
AYG39721.1\|166149_167136_-	peptidase S41	A0A2P0ZL68	Lactobacillus_phage	6.3e-98	60.1
AYG39722.1\|167504_168452_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	8.3e-156	86.3
AYG39723.1\|168742_169357_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.7e-106	93.6
AYG39724.1\|169361_171800_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	89.0
AYG39725.1\|171897_172458_+	hypothetical protein	A0A2P0ZL75	Lactobacillus_phage	7.0e-86	86.0
AYG39726.1\|172522_172765_+	hypothetical protein	NA	NA	NA	NA
AYG39727.1\|173029_174025_+	glycosyltransferase	S5FKN0	Shigella_phage	7.1e-57	40.5

DBSCAN-SWA_3

275353 : 342617

Bacillus_phage(37.5%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG39815.1\|275353_276616_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
AYG39816.1\|276843_277593_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
AYG39817.1\|277894_278308_-	NUDIX hydrolase	NA	NA	NA	NA
AYG39818.1\|280074_282822_+	CRISPR-associated helicase Cas3'	NA	NA	NA	NA
AYG39819.1\|282826_284578_+	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA
AYG39820.1\|284567_285179_+	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA
AYG39821.1\|285178_286258_+	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA
AYG39822.1\|286238_286964_+	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA
AYG39823.1\|286963_287632_+	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
AYG39824.1\|287785_289099_-	glycosyltransferase	NA	NA	NA	NA
AYG39825.1\|289102_289585_-	hypothetical protein	NA	NA	NA	NA
AYG39826.1\|290414_290945_+	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA
AYG39827.1\|290941_292078_+	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA
AYG39828.1\|292163_292478_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
AYG39829.1\|292490_293126_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
AYG39830.1\|293109_293727_+	HD domain-containing protein	NA	NA	NA	NA
AYG39831.1\|293744_294101_+	ribosome silencing factor	NA	NA	NA	NA
AYG39832.1\|294097_294832_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AYG39833.1\|294860_296030_+	nucleotidyltransferase	NA	NA	NA	NA
AYG39834.1\|296135_296690_+	DUF177 domain-containing protein	NA	NA	NA	NA
AYG39835.1\|296749_296929_+	50S ribosomal protein L32	NA	NA	NA	NA
AYG39836.1\|296980_297214_-	hypothetical protein	NA	NA	NA	NA
AYG39837.1\|297393_297978_+	hypothetical protein	NA	NA	NA	NA
AYG39838.1\|298375_299812_+	NADP-dependent phosphogluconate dehydrogenase	E3SPS4	Prochlorococcus_phage	1.2e-28	30.3
AYG39839.1\|299995_301345_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.4e-84	42.8
AYG39840.1\|301536_302223_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.9e-30	32.4
AYG39841.1\|302222_303866_+	sensor histidine kinase	W8CYF6	Bacillus_phage	1.9e-22	29.3
AYG39842.1\|304097_305846_+	hypothetical protein	NA	NA	NA	NA
AYG39843.1\|306448_307417_+	1,4-dihydroxy-2-naphthoate prenyltransferase	NA	NA	NA	NA
AYG39844.1\|307614_310797_-	SMC family ATPase	NA	NA	NA	NA
AYG39845.1\|310799_311981_-	exonuclease SbcCD subunit D	NA	NA	NA	NA
AYG39846.1\|312511_314086_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
AYG39847.1\|314104_314425_+	thioredoxin	NA	NA	NA	NA
AYG39848.1\|315744_316341_+	SdpI family protein	NA	NA	NA	NA
AYG39849.1\|316542_317472_-	membrane protein insertase YidC	NA	NA	NA	NA
AYG39850.1\|317535_317808_-	acylphosphatase	NA	NA	NA	NA
AYG39851.1\|318176_318944_+	RNA methyltransferase	NA	NA	NA	NA
AYG39852.1\|319044_319554_+	hydrolase	NA	NA	NA	NA
AYG39853.1\|319576_319936_+	transcriptional regulator	NA	NA	NA	NA
AYG39854.1\|320263_321310_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	4.0e-26	37.9
AYG39855.1\|321318_323736_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
AYG39856.1\|324009_324861_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	2.8e-41	44.7
AYG39857.1\|324863_325403_-\|transposase	transposase	NA	NA	NA	NA
AYG39858.1\|325685_326891_+	endolytic transglycosylase MltG	NA	NA	NA	NA
AYG39859.1\|326909_327539_+	uridine kinase	A0A1V0SAA3	Catovirus	4.9e-35	39.6
AYG39860.1\|327648_328131_+	transcription elongation factor GreA	NA	NA	NA	NA
AYG39861.1\|328648_329356_-	hypothetical protein	NA	NA	NA	NA
AYG39862.1\|329356_329812_-	LytTR family transcriptional regulator	NA	NA	NA	NA
AYG39863.1\|329996_330299_+	iron-sulfur cluster biosynthesis protein	NA	NA	NA	NA
AYG39864.1\|331438_334090_-	hypothetical protein	NA	NA	NA	NA
AYG39865.1\|334289_336326_+	penicillin-binding protein 2	NA	NA	NA	NA
AYG39866.1\|336448_336598_+	50S ribosomal protein L33	NA	NA	NA	NA
AYG39867.1\|336744_337311_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
AYG39868.1\|337297_337981_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
AYG39869.1\|337999_338221_+	DUF910 family protein	NA	NA	NA	NA
AYG39870.1\|338238_339201_+	ROK family protein	NA	NA	NA	NA
AYG39871.1\|339372_339999_+	dipeptidase	NA	NA	NA	NA
AYG39872.1\|341224_341371_-	hypothetical protein	NA	NA	NA	NA
AYG39873.1\|341364_342075_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.1e-34	37.8
AYG39874.1\|342077_342617_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1381626 : 1390140

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG40750.1\|1381626_1382205_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.1e-20	33.3
AYG40751.1\|1382197_1383223_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	4.2e-60	41.0
AYG40752.1\|1383219_1384674_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.5e-50	34.2
AYG40753.1\|1384658_1386878_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.1e-145	41.1
AYG40754.1\|1386870_1387551_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AYG40755.1\|1387550_1387805_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AYG40756.1\|1387806_1388538_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	1.9e-38	38.6
AYG40757.1\|1388540_1389671_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AYG40758.1\|1389654_1390140_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.7e-16	40.4

DBSCAN-SWA_5

1884467 : 1894326

Streptococcus_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG41178.1\|1884467_1885586_-	glycerate kinase	W6LM47	Streptococcus_phage	1.7e-38	37.1
AYG41179.1\|1885722_1887057_+	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	3.9e-26	27.3
AYG41180.1\|1888154_1889453_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	3.8e-18	33.6
AYG41181.1\|1889769_1891059_+	adenylosuccinate synthase	L7Y4J5	Megavirus	4.6e-72	37.0
AYG41182.1\|1891102_1892080_+	GMP reductase	Q4ZCY7	Staphylococcus_virus	9.9e-136	70.9
AYG41183.1\|1892297_1893245_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.7e-20	30.5
AYG41184.1\|1893234_1894326_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.9e-13	30.9

DBSCAN-SWA_6

2283366 : 2347421

Streptococcus_phage(17.65%)

capsid,head,portal,integrase,tail,tRNA,terminase

attL 2293084:2293100|attR 2342144:2342160

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG41504.1\|2283366_2285280_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
AYG41505.1\|2285298_2286690_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
AYG41506.1\|2286921_2288043_-	KH domain-containing protein	NA	NA	NA	NA
AYG41507.1\|2288587_2289841_-	amidohydrolase family protein	NA	NA	NA	NA
AYG41508.1\|2289973_2291611_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
AYG41509.1\|2292457_2293291_-	membrane protein insertase YidC	NA	NA	NA	NA
2293084:2293100	attL	NA	NA	NA	NA
AYG41510.1\|2293306_2293651_-	ribonuclease P protein component	NA	NA	NA	NA
AYG41511.1\|2293763_2293898_-	50S ribosomal protein L34	NA	NA	NA	NA
AYG41512.1\|2294405_2295773_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
AYG41513.1\|2295948_2297088_+	DNA polymerase III subunit beta	D0R7I4	Paenibacillus_phage	4.3e-13	29.9
AYG41514.1\|2297611_2297845_+	S4 domain-containing protein YaaA	NA	NA	NA	NA
AYG41515.1\|2297845_2298970_+	DNA replication/repair protein RecF	NA	NA	NA	NA
AYG41516.1\|2298966_2300913_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.9e-146	46.9
AYG41517.1\|2301085_2303695_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	1.4e-112	37.3
AYG41518.1\|2304086_2304281_-	hypothetical protein	NA	NA	NA	NA
AYG41519.1\|2304863_2305163_+	30S ribosomal protein S6	NA	NA	NA	NA
AYG41520.1\|2305199_2305793_+	single-stranded DNA-binding protein	A0A218MNB4	uncultured_virus	3.6e-40	72.1
AYG41521.1\|2305831_2306068_+	30S ribosomal protein S18	NA	NA	NA	NA
AYG41522.1\|2306244_2308257_+	PAS domain-containing protein	NA	NA	NA	NA
AYG41523.1\|2308270_2308723_+	50S ribosomal protein L9	NA	NA	NA	NA
AYG41524.1\|2308738_2310169_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	6.3e-123	52.8
AYG41525.1\|2310403_2311627_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.4e-54	33.3
AYG41526.1\|2311647_2312445_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.3e-45	38.8
AYG41527.1\|2312468_2313707_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	9.7e-112	53.1
AYG41528.1\|2315217_2316834_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
AYG42651.1\|2317293_2319201_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
AYG41529.1\|2319190_2320330_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
AYG41530.1\|2320326_2321499_+	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA
AYG41531.1\|2321491_2322931_+	glycogen synthase GlgA	NA	NA	NA	NA
AYG41532.1\|2322950_2325353_+	glycogen/starch/alpha-glucan family phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	7.9e-09	40.0
AYG41533.1\|2325369_2327187_+	glycoside hydrolase family 13 protein	NA	NA	NA	NA
AYG41534.1\|2327524_2328292_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
AYG41535.1\|2329322_2330000_-	beta-phosphoglucomutase	NA	NA	NA	NA
AYG41536.1\|2330017_2332738_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA
AYG41537.1\|2333121_2333565_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
AYG41538.1\|2333764_2333965_+	cold-shock protein	Q9AZD3	Lactococcus_phage	2.8e-21	74.6
AYG41539.1\|2334053_2334275_+	hypothetical protein	NA	NA	NA	NA
AYG41540.1\|2334491_2334713_-	hypothetical protein	NA	NA	NA	NA
AYG41541.1\|2334715_2335870_-\|integrase	site-specific integrase	A0A172LN96	Lactococcus_phage	8.0e-60	36.7
AYG41542.1\|2335927_2336614_-	XRE family transcriptional regulator	Q20DG0	Lactobacillus_phage	4.5e-10	56.5
AYG41543.1\|2336745_2336928_+	DNA-binding protein	NA	NA	NA	NA
AYG41544.1\|2336970_2337078_+	hypothetical protein	NA	NA	NA	NA
AYG41545.1\|2337196_2337427_+	hypothetical protein	NA	NA	NA	NA
AYG41546.1\|2337440_2338241_+	DNA replication protein	NA	NA	NA	NA
AYG41547.1\|2338240_2339635_+	virulence protein	Q4ZD27	Staphylococcus_phage	1.5e-68	36.0
AYG41548.1\|2339781_2340201_+	hypothetical protein	NA	NA	NA	NA
AYG41549.1\|2340224_2340527_+	hypothetical protein	NA	NA	NA	NA
AYG41550.1\|2340526_2340865_+\|head,tail	head-tail adaptor protein	A0A2P0ZLF0	Lactobacillus_phage	1.9e-09	36.0
AYG41551.1\|2340857_2341256_+	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	6.9e-19	44.7
AYG41552.1\|2342084_2342558_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
2342144:2342160	attR	NA	NA	NA	NA
AYG41553.1\|2344210_2344411_+	hypothetical protein	NA	NA	NA	NA
AYG41554.1\|2344411_2345512_+\|portal	phage portal protein	A0A2H4J9Q5	uncultured_Caudovirales_phage	1.0e-48	34.0
AYG41555.1\|2345508_2347038_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	4.8e-44	25.5
AYG41556.1\|2347151_2347421_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA

DBSCAN-SWA_7

2703128 : 2750332

Bacillus_virus(33.33%)

bacteriocin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG41849.1\|2703128_2704391_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
AYG41850.1\|2704546_2705056_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AYG41851.1\|2705086_2706283_-	DUF2075 domain-containing protein	NA	NA	NA	NA
AYG41852.1\|2706393_2706864_+	transcriptional regulator	NA	NA	NA	NA
AYG41853.1\|2707471_2708080_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
AYG41854.1\|2708341_2709262_-	ribonucleoside hydrolase RihC	NA	NA	NA	NA
AYG41855.1\|2709398_2710310_+	oxidoreductase	NA	NA	NA	NA
AYG41856.1\|2710367_2710814_-	ribonuclease H	NA	NA	NA	NA
AYG41857.1\|2711685_2711874_+	hypothetical protein	NA	NA	NA	NA
AYG41858.1\|2711921_2713448_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
AYG41859.1\|2713447_2714419_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.3e-22	31.7
AYG41860.1\|2714515_2715847_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
AYG41861.1\|2716836_2718354_+	glycerol kinase	NA	NA	NA	NA
AYG41862.1\|2718368_2720198_+	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA
AYG41863.1\|2720212_2720935_+	aquaporin family protein	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.1e-30	32.3
AYG41864.1\|2721362_2721752_+	DUF2247 family protein	NA	NA	NA	NA
AYG41865.1\|2721744_2722520_-\|transposase	IS5-like element ISLpl3 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.6e-27	53.2
AYG41866.1\|2722559_2722763_+	DUF2247 family protein	NA	NA	NA	NA
AYG41867.1\|2722805_2723285_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYG41868.1\|2723660_2724176_+	hypothetical protein	NA	NA	NA	NA
AYG41869.1\|2724273_2724357_+	hypothetical protein	NA	NA	NA	NA
AYG41870.1\|2724364_2724982_-	sugar O-acetyltransferase	NA	NA	NA	NA
AYG41871.1\|2724985_2726131_-	MFS transporter	NA	NA	NA	NA
AYG41872.1\|2726134_2726926_-	HAD family hydrolase	NA	NA	NA	NA
AYG41873.1\|2726995_2727868_-	AraC family transcriptional regulator	NA	NA	NA	NA
AYG41874.1\|2728027_2728843_+	HAD family phosphatase	NA	NA	NA	NA
AYG41875.1\|2729330_2730704_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
AYG41876.1\|2730746_2731931_+	cation:proton antiporter	NA	NA	NA	NA
AYG41877.1\|2732200_2732869_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AYG41878.1\|2733400_2733712_+	hypothetical protein	NA	NA	NA	NA
AYG41879.1\|2734262_2735009_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AYG41880.1\|2735087_2735372_+	hypothetical protein	NA	NA	NA	NA
AYG41881.1\|2735404_2735590_+	hypothetical protein	NA	NA	NA	NA
AYG41882.1\|2735893_2736268_+	hypothetical protein	NA	NA	NA	NA
AYG41883.1\|2736463_2737789_+	GHKL domain-containing protein	NA	NA	NA	NA
AYG41884.1\|2737881_2739219_+	GHKL domain-containing protein	NA	NA	NA	NA
AYG41885.1\|2739223_2739985_+	DNA-binding response regulator	NA	NA	NA	NA
AYG41886.1\|2740870_2742199_+	GHKL domain-containing protein	NA	NA	NA	NA
AYG41887.1\|2742199_2742946_+	DNA-binding response regulator	NA	NA	NA	NA
AYG41888.1\|2743929_2745096_+	hypothetical protein	NA	NA	NA	NA
AYG41889.1\|2745487_2746639_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
AYG41890.1\|2746643_2747864_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
AYG41891.1\|2748170_2748944_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AYG41892.1\|2749663_2750332_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_8

2923233 : 2961649

Lactobacillus_phage(91.89%)

capsid,protease,portal,head,holin,integrase,tail,transposase,terminase

attL 2923068:2923083|attR 2962183:2962198

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2923068:2923083	attL	NA	NA	NA	NA
AYG42027.1\|2923233_2924391_-\|integrase	site-specific integrase	A0A2P0ZL94	Lactobacillus_phage	5.3e-213	95.8
AYG42028.1\|2924561_2924924_-	hypothetical protein	E9LUS2	Lactobacillus_phage	1.1e-58	95.8
AYG42029.1\|2925081_2925270_-	hypothetical protein	E9LUS5	Lactobacillus_phage	1.8e-25	98.4
AYG42030.1\|2925847_2926030_-	hypothetical protein	A0A2P0ZL93	Lactobacillus_phage	6.7e-14	65.5
AYG42031.1\|2926522_2926723_-	hypothetical protein	E9LUS6	Lactobacillus_phage	6.5e-26	98.5
AYG42032.1\|2926783_2927191_-	ImmA/IrrE family metallo-endopeptidase	A0A1B0Y2S4	Lactobacillus_phage	5.2e-30	47.8
AYG42033.1\|2927183_2927516_-	XRE family transcriptional regulator	A0A1B0Y3N1	Lactobacillus_phage	6.7e-28	58.1
AYG42034.1\|2927778_2927967_+	hypothetical protein	NA	NA	NA	NA
AYG42035.1\|2928001_2928286_+	hypothetical protein	NA	NA	NA	NA
AYG42036.1\|2928538_2929246_+	phage regulatory protein	D2IYT0	Enterococcus_phage	3.1e-70	61.4
AYG42037.1\|2929257_2929467_+	hypothetical protein	NA	NA	NA	NA
AYG42038.1\|2929480_2929708_+	hypothetical protein	NA	NA	NA	NA
AYG42039.1\|2929723_2929945_-	hypothetical protein	NA	NA	NA	NA
AYG42671.1\|2930039_2930318_+	hypothetical protein	A0A2P0ZLA9	Lactobacillus_phage	6.4e-32	77.0
AYG42040.1\|2930453_2930693_+	tagatose-bisphosphate aldolase	E9LUT6	Lactobacillus_phage	4.5e-34	83.5
AYG42041.1\|2931549_2932344_+	replisome organizer	Q9AZA0	Lactobacillus_prophage	1.9e-52	69.7
AYG42042.1\|2932337_2933213_+	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	2.4e-48	40.9
AYG42043.1\|2933369_2933669_+	hypothetical protein	E9LUN7	Lactobacillus_phage	1.8e-43	86.9
AYG42044.1\|2933671_2933839_+	hypothetical protein	A0A2P0ZLB5	Lactobacillus_phage	1.1e-15	83.6
AYG42045.1\|2934362_2934596_+	hypothetical protein	NA	NA	NA	NA
AYG42046.1\|2934841_2935270_+	transcriptional regulator	E9LUP5	Lactobacillus_phage	8.3e-55	73.8
AYG42047.1\|2936241_2936769_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	3.8e-73	85.8
AYG42048.1\|2936746_2937277_+	endonuclease	U5U4N5	Lactobacillus_phage	3.2e-32	43.7
AYG42049.1\|2937407_2937866_+\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	1.6e-80	97.4
AYG42050.1\|2939447_2940223_-\|transposase	IS5-like element ISLpl3 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.6e-27	53.2
AYG42051.1\|2940611_2940806_+	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	9.7e-27	96.9
AYG42052.1\|2940808_2942002_+\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	6.2e-225	99.2
AYG42053.1\|2941979_2942735_+\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	1.7e-122	92.0
AYG42054.1\|2942734_2943967_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	2.9e-209	92.6
AYG42055.1\|2944039_2944372_+\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	1.4e-44	85.2
AYG42056.1\|2944361_2944709_+\|head,tail	head-tail adaptor protein	A0A2P0ZLF0	Lactobacillus_phage	2.0e-43	72.2
AYG42057.1\|2944711_2945119_+	HK97 gp10 family phage protein	A0A2P0ZLE6	Lactobacillus_phage	1.7e-60	89.2
AYG42058.1\|2945118_2945499_+	DUF806 family protein	A0A2P0ZLF4	Lactobacillus_phage	2.2e-59	90.5
AYG42059.1\|2945514_2946168_+\|tail	phage tail protein	A0A2P0ZLH1	Lactobacillus_phage	6.7e-112	93.5
AYG42060.1\|2946240_2946615_+	hypothetical protein	A0A2P0ZLH4	Lactobacillus_phage	2.7e-57	93.5
AYG42061.1\|2946653_2946845_+	hypothetical protein	NA	NA	NA	NA
AYG42062.1\|2946876_2951799_+	peptidase M23	A0A2P0ZLG0	Lactobacillus_phage	0.0e+00	62.6
AYG42063.1\|2951875_2953648_+\|tail	phage tail protein	A0A2P0ZLH2	Lactobacillus_phage	0.0e+00	94.2
AYG42064.1\|2953717_2956129_+	hypothetical protein	A0A2P0ZLF8	Lactobacillus_phage	0.0e+00	94.3
AYG42065.1\|2958898_2959150_+	hypothetical protein	A0A2K9VDF6	Lactobacillus_phage	1.2e-29	97.2
AYG42066.1\|2959298_2959658_+	hypothetical protein	E9LUR7	Lactobacillus_phage	1.1e-44	78.2
AYG42067.1\|2959670_2960843_+	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	3.1e-216	100.0
AYG42068.1\|2960842_2961106_+\|holin	holin	E9LUR9	Lactobacillus_phage	2.0e-38	100.0
AYG42069.1\|2961118_2961649_+\|holin	holin	E9LUS0	Lactobacillus_phage	2.9e-41	100.0
2962183:2962198	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3017650 : 3026398

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG42120.1\|3017650_3019354_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.0e-54	36.7
AYG42121.1\|3019375_3019684_+	nucleoid-associated protein, YbaB/EbfC family	NA	NA	NA	NA
AYG42122.1\|3019699_3020299_+	recombination protein RecR	NA	NA	NA	NA
AYG42123.1\|3020311_3020563_+	DUF2508 family protein	NA	NA	NA	NA
AYG42124.1\|3021061_3021727_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.3e-54	53.7
AYG42125.1\|3021723_3022053_+	hypothetical protein	NA	NA	NA	NA
AYG42126.1\|3022096_3023116_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	6.9e-31	32.8
AYG42127.1\|3023140_3023488_+	initiation-control protein YabA	M1PFV3	Streptococcus_phage	1.1e-12	34.3
AYG42128.1\|3023584_3024481_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.4e-82	55.7
AYG42129.1\|3024484_3025270_+	acyl-ACP thioesterase	NA	NA	NA	NA
AYG42130.1\|3025402_3026398_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.5

DBSCAN-SWA_10

3498036 : 3505782

Escherichia_phage(50.0%)

integrase

attL 3491088:3491103|attR 3510138:3510153

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3491088:3491103	attL	NA	NA	NA	NA
AYG42529.1\|3498036_3498906_+	glucose-1-phosphate thymidylyltransferase	K7QKA7	Escherichia_phage	7.8e-100	60.8
AYG42530.1\|3498909_3499491_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.9e-39	45.6
AYG42531.1\|3499500_3500529_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	6.4e-69	42.1
AYG42532.1\|3500598_3501441_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.4e-36	37.9
AYG42533.1\|3501587_3502190_-\|integrase	integrase	D2XR58	Bacillus_phage	1.3e-32	41.3
AYG42534.1\|3502546_3503317_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
AYG42535.1\|3503328_3504057_+	tyrosine-protein kinase family protein	NA	NA	NA	NA
AYG42536.1\|3504043_3504817_+	tyrosine protein phosphatase	NA	NA	NA	NA
AYG42537.1\|3504834_3505782_+	SDR family NAD(P)-dependent oxidoreductase	A0A1V0SAI6	Catovirus	5.8e-40	34.2
3510138:3510153	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032660

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP032659

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection