CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP032481	Staphylococcus aureus strain O326 chromosome, complete genome	5 crisprs	cas3,DEDDh,DinG,csa3,WYL	2	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP032481_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032481_1

1801172-1801255

Orphan

Consensus_repeat	Method
GGGCCCCAACACAGAAGCTGGCCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032481_1

>merge|CP032481|1|1801172-1801255|CRISPRCasFinder
GGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAACTGGCCAA

>CP032481|1|1|1801172-1801255|CRISPRCasFinder
GGGCCCCAACACAGAAGCTGGCCAA	TAGTCAGCTTTCAATAATGTGCAAGTTGGGGTAA
GGGCCCCAACACAGAAACTGGCCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP032481.1\|AYC78420.1\|1793750_1794827_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|349906
CP032481.1\|AYC78432.1\|1806055_1812520_-\|Peptidase	unknown	unknown	gnl\|CDD\|275089
CP032481.1\|AYC78437.1\|1818125_1818689_+\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|377744
CP032481.1\|AYC78429.1\|1801910_1802606_-\|Pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
CP032481.1\|AYC78434.1\|1813179_1815597_-\|Leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
CP032481.1\|AYC78435.1\|1815884_1817066_-\|Multidrug-resistance-protein-B	unknown	unknown	gnl\|CDD\|340887
CP032481.1\|AYC78436.1\|1817175_1818129_+\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|224163
CP032481.1\|AYC78428.1\|1801471_1801894_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378938
CP032481.1\|AYC78431.1\|1804670_1805939_+\|putative-exported-protein	unknown	unknown	gnl\|CDD\|367519
CP032481.1\|AYC78425.1\|1797320_1798112_-\|Phosphotransferase	unknown	unknown	gnl\|CDD\|223584
CP032481.1\|AYC78424.1\|1796661_1797306_-\|tRNA-guanine-methyltransferase	unknown	unknown	gnl\|CDD\|234649
CP032481.1\|AYC78430.1\|1802602_1804264_-\|Polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
CP032481.1\|AYC78426.1\|1798661_1799510_-\|D-alanine-aminotransferase	unknown	unknown	gnl\|CDD\|130191
CP032481.1\|AYC78422.1\|1795349_1796192_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293814
CP032481.1\|AYC78418.1\|1792417_1793275_-\|UPF0354-protein	unknown	unknown	gnl\|CDD\|237463
CP032481.1\|AYC78421.1\|1794910_1795225_+\|Peptidase	unknown	unknown	gnl\|CDD\|227871
CP032481.1\|AYC78433.1\|1812846_1813158_-\|Rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
CP032481.1\|AYC78423.1\|1796254_1796395_-\|Hypothetical-protein	unknown	unknown	unknown
CP032481.1\|AYC78427.1\|1799513_1800923_-\|Xaa-His-dipeptidase--like-protein	unknown	unknown	gnl\|CDD\|235988
CP032481.1\|AYC78419.1\|1793374_1793686_-\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245

Protein	Function_ID	Function_description	E-value
CP032481.1\|AYC78429.1\|1801910_1802606_-\|Pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	6.04755e-93
CP032481.1\|AYC78432.1\|1806055_1812520_-\|Peptidase	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	2.72677e-120
CP032481.1\|AYC78437.1\|1818125_1818689_+\|Hypothetical-protein	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	2.34219e-65
CP032481.1\|AYC78420.1\|1793750_1794827_-\|Hypothetical-protein	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	1.94332e-151
CP032481.1\|AYC78434.1\|1813179_1815597_-\|Leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
CP032481.1\|AYC78435.1\|1815884_1817066_-\|Multidrug-resistance-protein-B	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.66072e-94
CP032481.1\|AYC78436.1\|1817175_1818129_+\|Hypothetical-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	0
CP032481.1\|AYC78428.1\|1801471_1801894_-\|hypothetical-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	0.000469922
CP032481.1\|AYC78431.1\|1804670_1805939_+\|putative-exported-protein	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
CP032481.1\|AYC78425.1\|1797320_1798112_-\|Phosphotransferase	gnl\|CDD\|223584	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism].	1.89607e-82
CP032481.1\|AYC78424.1\|1796661_1797306_-\|tRNA-guanine-methyltransferase	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.9831e-87
CP032481.1\|AYC78430.1\|1802602_1804264_-\|Polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.06974e-123
CP032481.1\|AYC78426.1\|1798661_1799510_-\|D-alanine-aminotransferase	gnl\|CDD\|130191	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase. This enzyme is a homodimer. The pyridoxal phosphate attachment site is the Lys at position 146 of the seed alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached. [Energy metabolism, Amino acids and amines].	8.53229e-159
CP032481.1\|AYC78422.1\|1795349_1796192_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293814	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain. Bacillus subtilis YtnP inhibits the signaling pathway required for the streptomycin production and development of aerial mycelium in Streptomyces griseus. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.32707e-157
CP032481.1\|AYC78418.1\|1792417_1793275_-\|UPF0354-protein	gnl\|CDD\|237463	PRK13668, PRK13668, hypothetical protein; Provisional.	2.02352e-168
CP032481.1\|AYC78421.1\|1794910_1795225_+\|Peptidase	gnl\|CDD\|227871	COG5584, COG5584, Predicted small secreted protein [Function unknown].	4.19522e-46
CP032481.1\|AYC78433.1\|1812846_1813158_-\|Rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	8.68973e-26
CP032481.1\|AYC78427.1\|1799513_1800923_-\|Xaa-His-dipeptidase--like-protein	gnl\|CDD\|235988	PRK07318, PRK07318, dipeptidase PepV; Reviewed.	0
CP032481.1\|AYC78419.1\|1793374_1793686_-\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.34221e-24

>CP032481.1|AYC78427.1|1799513_1800923_-|Xaa-His-dipeptidase--like-protein
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQDKLAEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE
>CP032481.1|AYC78426.1|1798661_1799510_-|D-alanine-aminotransferase
MEKIFLNGEFVSPSEAKVSYNDRGYVFGDGIYEYIRVYNGKLFTVTEHYERFLRSANEIGLDLNYSVEELIELSRKLVDMNQIETGAIYIQATRGVAERNHSFPTPEVEPAIVAYTKSYDRPYDHLENGVNGVTVEDIRWLRCDIKSLNLLGNVLAKEYAVKYNAVEAIQHRGETVTEGSSSNAYAIKDGVIYTHPINNYILNGITRIVIKKIAKDYNIPFKEETFTVDFLKNADEVIVSSTSAEVTPVIKLDGEPVNDGKVGPITRQLQEGFEKYIESHSI
>CP032481.1|AYC78425.1|1797320_1798112_-|Phosphotransferase
MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAALSAEGIVPKLVWTKRIETGEVVTAQHWKNGRELSSNEMKQTRVAHLLKKIHNSRPLLSMLKRMEMEPITPEIMLNKINASLSREVLTHHIVRKSLTYLEEHMPSLDSRFFTVVHGDVNHNNWLLSDRDELFLVDWEGAMIADPAIDIGMLLYNYVPQQQWSEWLETYGVQESLNLNKRMKWYTVIQSIGLVQWYEEQKRYKDMNTWLKFLNEVMNSNMFI
>CP032481.1|AYC78424.1|1796661_1797306_-|tRNA-guanine-methyltransferase
MRVRYKPWAEDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEIGSGMGQFITTLAAQNPHINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWPKNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLHQEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
>CP032481.1|AYC78423.1|1796254_1796395_-|Hypothetical-protein
MEILIINLKLQSDGYDAFTYNMIALIFISSWKCISVGRFAFVRIYE
>CP032481.1|AYC78422.1|1795349_1796192_-|MBL-fold-metallo-hydrolase
MKIGDISIHYLNGGNTKMDGGAMFGVVPKPLWSKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEPVPGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKERMIPYFIQQQYWFLFYHDENYFAVKYSDDGENIDAYILRETLVDNN
>CP032481.1|AYC78421.1|1794910_1795225_+|Peptidase
MMTKLKYIIPTIIAVAIVIISTISIIQFINRKRYNPVKVLNEVKSYFMNVKGSYIVYEPFVHPETDKYRLVYQGGITTIKNGQNIHYDFYADAYTGEVINIVER
>CP032481.1|AYC78420.1|1793750_1794827_-|Hypothetical-protein
MNINKKVTLQRIQTLTELHGAPGFEEEVKNYMTQQMAPYVDEFIENRMGGFFGVKKSKNPNAKRVMIAAHMDEIGFMITNITKNGMIQFTNLGDVANDIWQGQRLVIKNRNGDKIIGVVSNIPKHFRTGSEGAPEIKDLTLDIGAQNEDEVRERGIDIGDTIVPHTPFTQLSEHRYSAKAWDNRYGCVLAIEILELLKDIELDVDLYVGANVQEEVGLRGAKASAEMIDPDVAFVVDCSPANDVKGNQPLSGELGKGTLIRIKDGTMILKPAFRDYLLKLVEAHDIEHQYYMSPGGTDGGEIHKANIGIPTAVIGVCARYIHSTDSVFDIRDYFAARSLLSEAICNLDNNQIETLQYK
>CP032481.1|AYC78419.1|1793374_1793686_-|Thioredoxin
MKQLESEQQFESLKQGATVFEFTAGWCPDCRVIEPDLPELEARYPMFDFVSVDRDKFMDICIENGIMGIPSFLVYKNGELLGSYIGKERKSIEQIDAFLAQYV
>CP032481.1|AYC78418.1|1792417_1793275_-|UPF0354-protein
MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIKLNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQGVPFIYDEHTAETAVYYAVDLGKSYRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSYTTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEANRRKFNKDK
>CP032481.1|AYC78428.1|1801471_1801894_-|hypothetical-protein
MAKGNLFKAILGIGGAVAAVLVTRKDSRDKLKAEYNKYKQDPQSYKDNAKDKATQLGTIANETIKEVKTNPKEYANRLKNNPKAFFEEEKSKFTEFDNKTDESIEKGKFDDEGGAAPNNNLRIVTEEDLKKNKNALSDKE
>CP032481.1|AYC78429.1|1801910_1802606_-|Pseudouridine-synthase
MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKISVRGELIEYVENVYIMLNKPKGYISATEDHHSKTVIDLIPEYQHLNIFPVGRLDKDTEGLLLITNDGDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVKLSDGKVKPAILTYIDNQTSHVTIYEGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
>CP032481.1|AYC78430.1|1802602_1804264_-|Polysaccharide-biosynthesis-protein
MSESKEMVRGTFLITISILITKVLGVLFIIPFNYLIGGQENMAPFTYAYAPYNIAIAVATAGVPLAASKYVAKYNAIGAYKVSQKFYKSSFIVMSITGVLGFLVLYFLAPYISELTLARNVHDKNGWSVDDITWIIRIISMVVIFIPVLATWRGIFQGYKSMGPTAVSEVTEQIARVIFILIGSYLVLNVFDGSILLANGIATFAAAVGAIIGIFTLWYYWRKRKHNIDRMVESDYTDIDVSYGKMYKEIIAYSIPFVIVSLNYPLFNLVDQFTHNGALSLVGIPSQLQDIFFNMLNMSTNKIVMIPTSLSAGFAVSLIPYITKTFAEGRLHEMHHQIRTSIGVLMFITVPASIGIMALAQPLFTVFYGYDPIVLGHDPNHDGSRLLFYYAPVAILISLLSVTASMLQGIDKQKLTVYVILASVVIKLALNYPLIMLFHTPGAILSTSIALLFAIGCNFYILKKYAKFKFSYSWIHFAKIFLYSFIMMLGVELVFFLANLFLEPTKLGYLIIIILGVTVGILIYGTITIKTRLADEFLGEIPEKLRRRVRFLR
>CP032481.1|AYC78431.1|1804670_1805939_+|putative-exported-protein
MYQTIIIGGGPSGLMAAVAASEQSNNVLLIEKKKGLGRKLKISGGGRCNVTNRLPYAEIIKNIPGNGKFLYSPFSIFDNESIIDFFESRGVKLKEEDHGRMFPVSNKAQDVVDTLVTTIERQHVTIKEEEAVSRIEVNTDQTFTVHTQSSSYVSHSLVIATGGTSVPQTGSTGDGYKFAQDLGHTITELFPTEVPITSAEPFIKSNRLKGLSLKDVELSVLKKNGKKRISHQMDMLFTHFGISGPATLRCSQFVYKEQKNQKTQHISMAIDAFPELNHEQLKQHITSLLSDTPDKIIKNSLHGLIEERYLLFMLEQAGIDENTTSHHLSNQQLNDLVNMFKGFVFKVNGTLPIDKAFVTGGGVSLKEIQPKTMMSKLVPGLFLCGEVLDIHGYTGGYNITSALVTGHVAGLYAGHYSHASME
>CP032481.1|AYC78432.1|1806055_1812520_-|Peptidase
MNLLKKNKYSIRKYKVGIFSALIGTVLLLSNPNGAQALTTDNNVQSDTNQATPVNSQDTNVANNRGLANSAQNTPNQSATTNQSTNQALVNHNNGSIANQATPAPTQPSASPAQNNNHSDANSTATETVSNANNNDVVSNNTTLNVPNRTNENGSGGHLTLKEIQEDVRHSSDKPELVAIAEQASNRPKKRSRRAAPADPNANNAGQNAPNEVLSFDDNGIRPSTNRSVPSVTVVDNLPGFTLINGGKVGVFSHAMVRTSMFDSGDAKNYQAQGNVIALGRIKGNDTNDHGDFNGIEKSLTVNPNSELIFEFNTMTTKNYQGVTNLIIKNADNDTVIAEKSVAYGPIWRLFKVPDNVSHLKIQFVPKNDAITDARGIYQLRDGYKYYDFVDSIGLHSGSHVYVERRTMEPTATNNKEFTVTTSLKNNGNFGASFNTDDFVYKVQLPEGVEYVNNSLTKDFPSSNSGVDMNDFNVTYDAANRVITIKSTGGGSGNSPARLMPDKILDLKYKLRVNNVPTPRTVTFNDTLTYKTYTQDFINSPAESHTVSTNPYTIDIIMNKDALQAEVDRRIQQADYTFASLDIFNGLKRRAQTILDENRNNVPLNKRVSQADIDSLTNQMQHTLIRSVDAENAVNKKVDQMEDLVNQNDELTDEEKQAAIQVIEEHKNEIIGDIGDQTTDAGVTRIKDQGIQTLSGDTATPVVKPNAKKAIRDKATKQREIINATPDATEDEIQDAINQLATDETDAIDNVTNATTNADVETAKNNGINTIGAVVPQVTHKKAARDAINQATATKRQQINSNREATQEEKDAALNELTQATNHALEQINQATTNADVDNAKGDGLNAINPIAPVTVVKQAARDAVSHDAQQHIAEINANPDATQEERQAAIDKVNAAVTAANTNILNANTNANVEQVKTNAIQGIQAITPATKVKTDAKNAIDKSAETQHNTIFNNDATLEEQQAAQQLLDQAVATAKQNINAADTNQEVAQAKDQGTQNIVVIQPATQVKTDARNAVNDKAREAITNINATPGATREEKQEAINRVNTLKNRALTDIGVTSTTAMVNSIRDDAVNQIGAVQPHVTKKQTATGVLNDLATAKKQEINQNTNATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALAQINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAENNIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQLKDQAFNQINQNQTNDQVDATTNQAVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQIDNSLDSTDNEKEVASQALTKEKEKALAAIDQAQTNSQVNQAATNGVSAIKIIQPETKVKPAAREKINQKANELRAKINQDKEATAEERQVALDKINEFVNQAMTDITNNRTNQQVDDTTSQALDSIALVTPEHIVRAGARGAVKQQYEAKKQEIEQAEHATDEEKQVALNQLANNEKLALQNINQAVTNNDVKRVETNGIATLKGVQPHIVIKPEEQQAIKASAENQVESIKDTPHATVDELDEANQLISDTLKKAQQEIENTNQDAAVTDVRNQTIKAIEQIKPKVRRKRAALDSIEENNKNQLDAIRNTLDTTQDERDVAIDTLNKIVNTIKNDIAQNKTNAEVDRTETDGNDNIKVILPKVQVKPAARQSVGVKAEAQNALIDQSDLSTEEERLAAKHLVEQALNQAIDQINHADKTAQVNQDSINAQNIISKIKPATTVKATALQQIQNIATNKINLIKANNEATDEEQNAAIAQVEKELIKAKQQIASAVTNADVAYLLHDEKNEIREIEPVINRKASAREQLTTLFNDKKQAIEANIQATVEERNSILAQLQNIYDTAIGQIDQDRSNAQVDKTASLNLQTIHDLDVHPIKKPDAEKTINDDLARVTALVQNYRKVSDRNKADALKAITALKLQMDEELKTARTNADVDAVLKRFNVALSDIEAVITEKENSLLRIDNIAQQTYAKFKAIATPEQLAKVKVLIDQYVADGNRMIDEDATLNDIKQHTQFIVDEILAIKLPAEATKVSPKVIQSAPKVCTPIIKEETHESRKVEKELPNTGSEGMDLPLKEFALITGAALLARRRTKNEKES
>CP032481.1|AYC78433.1|1812846_1813158_-|Rhodanese-like-domain-containing-protein
MKSITTDELKNKLLESNSVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNLDVFNKNETYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWGDEGLEIKSI
>CP032481.1|AYC78434.1|1813179_1815597_-|Leucine--tRNA-ligase
MLNYNHNQIEKKWQDYWDENKTFKTNDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDIISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTKKNIQTFKRQIKELGFSYDWDREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVIDGVSERGGHPVYRKPMKQWVLKITEYADQLLADLDDLDWPESLKDMQRNWIGRSEGAKVSFDVDNAEGKVEVFTTRPDTIYGASFLVLSPEHALVNSITTDEYKEKVKAYQTEASKKSDLERTDLAKDKSGVFTGAYAINPLSGEKVQIWIADYVLSTYGTGAIMAVPAHDDRDYEFAKKFDLPIIEVIEGGNVEEAAYTGEGKHINSGELDGLENEAAITKAIQLLEQKGAGEKKVNYKLRDWLFSRQRYWGEPIPVIHWEDGTMTTVPEEELPLLLPETDEIKPSGTGESPLANIDSFVNVVDEKTGMKGRRETNTMPQWAGSCWYYLRYIDPKNENMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLYDLGIVPTKEPFQKLFNQGMILGEGNEKMSKSKGNVINPDDIVQSHGADTLRLYEMFMGPLDAAIAWSEKGLDGSRRFLDRVWRLMVNEDGTLSSKIVTTNNKSLDKVYNQTVKKVTEDFETLGFNTAISQLMVFINECYKVDEVYKPYIEGFVKMLAPIAPHIGEELWSKLGHEESITYQPWPTYDEALLVDDEVEIVVQVNGKLRAKIKIAKDTSKEEMQEIALSNDNVKASIEGKDIMKVIAVPQKLVNIVAK
>CP032481.1|AYC78435.1|1815884_1817066_-|Multidrug-resistance-protein-B
MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPILYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA
>CP032481.1|AYC78436.1|1817175_1818129_+|Hypothetical-protein
MGNHFQYAFENKRYHTWNYHLKNKFGQKIFKVALDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRADSIAVQFKEIKEKMHEKWHEGKYIAYFQAFTNTHAPVEVLKEKFEPVLKEPGVVGLSIGTRPDCLPDDVVEYLADLNQRTYLWVELGLQTIHQSTSDLINRAHDMKTYYDGVAKLRKHNINVCTHIINGLPGEDYDMMMATAKEVAQMDVQGIKIHLLHLLKGTPMVKQYDKGLLTFMTQEEYTNLVVDQLEVIPPEMIVHRITGDGPIDIMVGPMWSVNKWEVLNGIDAELARRNSYQGLRYKSKVKQ
>CP032481.1|AYC78437.1|1818125_1818689_+|Hypothetical-protein
MKLERILPFSKTLIKQHITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSIVTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLYQKHAQVLQYQFLNQRNHAPFICAIEKIS

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Click the colored protein region to show detailed information

Crispr_ID: CP032481_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032481_2

1915073-1915200

Orphan

Consensus_repeat	Method
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032481_2

>merge|CP032481|2|1915073-1915200|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTCATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTAAATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

>CP032481|2|2|1915073-1915200|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	ATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTA
AATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

Protein	Signature genes	Signature genes Name	Protein_function
CP032481.1\|AYC78537.1\|1932171_1933149_+\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|224899
CP032481.1\|AYC78527.1\|1911631_1913089_-\|Arginine-binding-protein	unknown	unknown	gnl\|CDD\|223836
CP032481.1\|AYC78521.1\|1907897_1908164_+\|Hypothetical-protein	unknown	unknown	unknown
CP032481.1\|AYC78519.1\|1905591_1906977_-\|fumarate-hydratase-class-II	unknown	unknown	gnl\|CDD\|234779
CP032481.1\|AYC78536.1\|1930982_1932020_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
CP032481.1\|AYC78530.1\|1923752_1924679_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|240632
CP032481.1\|AYC78532.1\|1925244_1926534_+\|glutamate-1-semialdehyde-aminotransferase	unknown	unknown	gnl\|CDD\|183493
CP032481.1\|AYC78522.1\|1908228_1908381_-\|Hypothetical-protein	unknown	unknown	unknown
CP032481.1\|AYC78525.1\|1909638_1910766_-\|Epoxyqueuosine-(oQ)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
CP032481.1\|AYC78523.1\|1908405_1909005_-\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|223440
CP032481.1\|AYC78524.1\|1909163_1909634_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
CP032481.1\|AYC78533.1\|1926877_1927921_+\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|226614
CP032481.1\|AYC78534.1\|1928110_1929847_-\|Multidrug-export-ATP-binding	unknown	unknown	gnl\|CDD\|224055
CP032481.1\|AYC78520.1\|1907172_1907595_-\|putative-membrane-protein	unknown	unknown	unknown
CP032481.1\|AYC78528.1\|1913346_1914408_-\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|226167
CP032481.1\|AYC78538.1\|1933409_1934246_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|224596
CP032481.1\|AYC78531.1\|1924708_1925164_-\|Thioredoxin-peroxidase	unknown	unknown	gnl\|CDD\|224146
CP032481.1\|AYC78526.1\|1910916_1911645_-\|Glutamate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
CP032481.1\|AYC78535.1\|1930137_1930680_-\|UPF0374-protein	unknown	unknown	gnl\|CDD\|184219
CP032481.1\|AYC78529.1\|1923209_1923656_-\|Peroxide-responsive-repressor-PerR	unknown	unknown	gnl\|CDD\|223806

Protein	Function_ID	Function_description	E-value
CP032481.1\|AYC78537.1\|1932171_1933149_+\|putative-membrane-protein	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	2.87563e-40
CP032481.1\|AYC78527.1\|1911631_1913089_-\|Arginine-binding-protein	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	5.74845e-97
CP032481.1\|AYC78530.1\|1923752_1924679_-\|Hypothetical-protein	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	2.38688e-132
CP032481.1\|AYC78519.1\|1905591_1906977_-\|fumarate-hydratase-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
CP032481.1\|AYC78533.1\|1926877_1927921_+\|putative-membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.05206e-77
CP032481.1\|AYC78526.1\|1910916_1911645_-\|Glutamate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.22702e-152
CP032481.1\|AYC78525.1\|1909638_1910766_-\|Epoxyqueuosine-(oQ)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	6.7316e-180
CP032481.1\|AYC78523.1\|1908405_1909005_-\|putative-membrane-protein	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	9.77274e-11
CP032481.1\|AYC78524.1\|1909163_1909634_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.70324e-88
CP032481.1\|AYC78536.1\|1930982_1932020_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.25463e-157
CP032481.1\|AYC78534.1\|1928110_1929847_-\|Multidrug-export-ATP-binding	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
CP032481.1\|AYC78528.1\|1913346_1914408_-\|putative-membrane-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	1.46177e-121
CP032481.1\|AYC78538.1\|1933409_1934246_-\|Hypothetical-protein	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	0.000600177
CP032481.1\|AYC78531.1\|1924708_1925164_-\|Thioredoxin-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	6.6732e-69
CP032481.1\|AYC78532.1\|1925244_1926534_+\|glutamate-1-semialdehyde-aminotransferase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
CP032481.1\|AYC78535.1\|1930137_1930680_-\|UPF0374-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.12131e-126
CP032481.1\|AYC78529.1\|1923209_1923656_-\|Peroxide-responsive-repressor-PerR	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.09298e-56

>CP032481.1|AYC78528.1|1913346_1914408_-|putative-membrane-protein
MSNAKNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFILKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>CP032481.1|AYC78527.1|1911631_1913089_-|Arginine-binding-protein
MKCLIRFILILGLLISSAMVYINPTAHAEQDQTWEKIKERGELRVGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNEYKDIKDFNNKKVGAQKGTEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGAVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISKYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKVISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSFGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLLVAAALYFVLTFVLTRIMNMIEGRLNASD
>CP032481.1|AYC78526.1|1910916_1911645_-|Glutamate-ABC-transporter-ATP-binding-protein
MPVIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>CP032481.1|AYC78525.1|1909638_1910766_-|Epoxyqueuosine-(oQ)-reductase-QueG
MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE
>CP032481.1|AYC78524.1|1909163_1909634_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
>CP032481.1|AYC78523.1|1908405_1909005_-|putative-membrane-protein
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNIEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>CP032481.1|AYC78522.1|1908228_1908381_-|Hypothetical-protein
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
>CP032481.1|AYC78521.1|1907897_1908164_+|Hypothetical-protein
MKSDFQFLQTLQVGETAPTLKLAESQLRITCKLAGPNIVELDPQFLQTMQVGGASNSEAGEKSASMNIIKKLGNKMLPNFIFKIINPI
>CP032481.1|AYC78520.1|1907172_1907595_-|putative-membrane-protein
MKLEEIYIFMLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATVEATKTKYRN
>CP032481.1|AYC78519.1|1905591_1906977_-|fumarate-hydratase-class-II
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVASYVANMYLKDHQSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKKHILNLAIGGTAVGTGINAHPEFGDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
>CP032481.1|AYC78529.1|1923209_1923656_-|Peroxide-responsive-repressor-PerR
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
>CP032481.1|AYC78530.1|1923752_1924679_-|Hypothetical-protein
MREVETELQQRFSGVDFKFYKKASEIPESDLANLDILVGYDGGINEAFLRRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFNMNLIGLSKSGQNKDEFDEVYTIESLESTLPNADIVINALPETQETIHLLKKKHFELMKDEALFINIGRGSIVKEPLLIEVLKSRVIRHAYLDVFENEPLKPNHELYKLDNVTITAHITGNDYEAKYDLLDIFKNNLVNFLNKNDLIENEVDAKKGY
>CP032481.1|AYC78531.1|1924708_1925164_-|Thioredoxin-peroxidase
MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIIYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISSDSKKKHQNFIEKHGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG
>CP032481.1|AYC78532.1|1925244_1926534_+|glutamate-1-semialdehyde-aminotransferase
MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHGAYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKLRDTIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMPQPGFLEEVNEISHNNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPIGGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQLEEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIKQTLKAADYAFSQMK
>CP032481.1|AYC78533.1|1926877_1927921_+|putative-membrane-protein
MSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNISSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL
>CP032481.1|AYC78534.1|1928110_1929847_-|Multidrug-export-ATP-binding
MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSIIVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDENYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGNIVETGTHRELIAKQGAYEHLYSIQNL
>CP032481.1|AYC78535.1|1930137_1930680_-|UPF0374-protein
MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGGNDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWKERYKKIRQY
>CP032481.1|AYC78536.1|1930982_1932020_-|A/G-specific-adenine-glycosylase
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVHDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSYEQELLPYVTTDAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNNQGQYLLQKRSEKLLHGMWQFPMFESEHARREMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAVSGTINIETLPDDMIWFDLSDRDQYTFPVPMSKIYQFING
>CP032481.1|AYC78537.1|1932171_1933149_+|putative-membrane-protein
MDTATHIAIGVGLTALATQDPAMASTFGATATTLIVGSLIPDGDTVLKLKDNATYISHHRGITHSIPFTILWPILITFLIFTFFSGTNPFHVWMWAQLAVFLHVFVDIFNSYGTQALRPITNKWIQLSVINTFDPIIFTVLCIGIVLWVIGLHPFAVFFPIIALLIIYYMIRFKMRAVIKQQALKAIQQEHHPVKVFVAPTIKFMEWRVAIQTDAHDYVGKAYGRNVVFSDKVERQTLSTDSILWKVKGNKDIRTFLNFSSIYRWQTTTLADGSTEIRLIDLRYLKNDHYSFVAIAHVTNDNVIDHSYIGWVFTEDKLQRKLYAK
>CP032481.1|AYC78538.1|1933409_1934246_-|Hypothetical-protein
MLDNIILYFKNLPHTKRYVTERLKQSWKSFLIVLAACLILIIASETLFSFSHLTDVKEVRWLFRIIALIVFAVLMFTIYISYHHYMNDFLVTKLFNISAATPVVIMSILSFIMLVILTMISALVKPVNFETSYIALFYFVVMATIFVGLISVTFGLIRLLTEKINIIFYGICVLSFLLLPIIFIPNPNHVFINHILMLNPMYYIVNGIAQSIIFGISSMENIPYHFYFILFLCLIAAVNFVLARYTTHAIYNKTSKVTQTDNQQDVSNDSTDEADTSS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP032481_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032481_3

2004948-2005137

Orphan

Consensus_repeat	Method
CCACCCCAACTTGCATTGT	CRT

3 spacers

DEDDh

The CRISPR arrays of CP032481_3

>merge|CP032481|3|2004948-2005137|CRT
CTACCCCAACTTGCATTGTCTGTAGAATTTCCTTTTGAAATTCTCTATGTTGGGGGCCCCACCCCAACTTGCACATTATTGTAAGCTGACAGAAAGTCAGCTTCTATGTTGGGACCCCACCAACTTGCATTGTTTGCTGAAATTAGGAATCCAACTTCTCTATGTTGAGGCCCACCCCAACTTGCATTGT

>CP032481|3|1|2004948-2005137|CRT
CTACCCCAACTTGCATTGT	CTGTAGAATTTCCTTTTGAAATTCTCTATGTTGGGGGCC
CCACCCCAACTTGCACATT	ATTGTAAGCTGACAGAAAGTCAGCTTCTATGTTGGGA
CCCCACCAACTTGCATTGT	TTGCTGAAATTAGGAATCCAACTTCTCTATGTTGAGGC
CCACCCCAACTTGCATTGT

Protein	Signature genes	Signature genes Name	Protein_function
CP032481.1\|AYC78637.1\|2012611_2013811_-\|CamS-sex-pheromone-family-protein	unknown	unknown	gnl\|CDD\|227188
CP032481.1\|AYC78638.1\|2013823_2015827_-\|DNA-ligase	unknown	unknown	gnl\|CDD\|236137
CP032481.1\|AYC78635.1\|2010932_2011286_-\|HxlR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|334619
CP032481.1\|AYC78631.1\|2005668_2007096_-\|glutamyl-tRNA-amidotransferase-subunit-B	unknown	unknown	gnl\|CDD\|235489
CP032481.1\|AYC78626.1\|2000441_2001512_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP032481.1\|AYC78622.1\|1996591_1997323_-\|putative-cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|225974
CP032481.1\|AYC78629.1\|2003899_2004847_-\|Diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|183982
CP032481.1\|AYC78627.1\|2001757_2002288_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378690
CP032481.1\|AYC78620.1\|1994778_1995765_+\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|226614
CP032481.1\|AYC78623.1\|1997324_1998638_-\|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|223840
CP032481.1\|AYC78628.1\|2002457_2003819_-\|putative-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|225174
CP032481.1\|AYC78625.1\|1999820_2000375_+\|putative-DNA-polymerase-III-alpha-chain	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
CP032481.1\|AYC78633.1\|2008567_2008870_-\|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-C	unknown	unknown	gnl\|CDD\|178810
CP032481.1\|AYC78636.1\|2011410_2012370_+\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|240081
CP032481.1\|AYC78621.1\|1995953_1996406_-\|Hypothetical-protein	unknown	unknown	unknown
CP032481.1\|AYC78634.1\|2009235_2010774_+\|high-affinity-proline-permease	unknown	unknown	gnl\|CDD\|273981
CP032481.1\|AYC78639.1\|2015830_2018023_-\|ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|273429
CP032481.1\|AYC78630.1\|2005483_2005630_-\|Hypothetical-protein	unknown	unknown	unknown
CP032481.1\|AYC78624.1\|1998929_1999430_+\|ferritin	unknown	unknown	gnl\|CDD\|224445
CP032481.1\|AYC78632.1\|2007108_2008566_-\|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A	unknown	unknown	gnl\|CDD\|234572

Protein	Function_ID	Function_description	E-value
CP032481.1\|AYC78637.1\|2012611_2013811_-\|CamS-sex-pheromone-family-protein	gnl\|CDD\|227188	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only].	0
CP032481.1\|AYC78638.1\|2013823_2015827_-\|DNA-ligase	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
CP032481.1\|AYC78631.1\|2005668_2007096_-\|glutamyl-tRNA-amidotransferase-subunit-B	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
CP032481.1\|AYC78626.1\|2000441_2001512_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP032481.1\|AYC78622.1\|1996591_1997323_-\|putative-cobyric-acid-synthase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	2.59826e-119
CP032481.1\|AYC78629.1\|2003899_2004847_-\|Diacylglycerol-kinase	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0
CP032481.1\|AYC78627.1\|2001757_2002288_-\|hypothetical-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.4991e-11
CP032481.1\|AYC78620.1\|1994778_1995765_+\|putative-membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.20478e-76
CP032481.1\|AYC78623.1\|1997324_1998638_-\|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	2.56502e-98
CP032481.1\|AYC78628.1\|2002457_2003819_-\|putative-RNA-methyltransferase	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
CP032481.1\|AYC78625.1\|1999820_2000375_+\|putative-DNA-polymerase-III-alpha-chain	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
CP032481.1\|AYC78633.1\|2008567_2008870_-\|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-C	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	5.296e-34
CP032481.1\|AYC78636.1\|2011410_2012370_+\|Hypothetical-protein	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	4.34956e-72
CP032481.1\|AYC78635.1\|2010932_2011286_-\|HxlR-family-transcriptional-regulator	gnl\|CDD\|334619	pfam01638, HxlR, HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.	9.33058e-32
CP032481.1\|AYC78634.1\|2009235_2010774_+\|high-affinity-proline-permease	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
CP032481.1\|AYC78639.1\|2015830_2018023_-\|ATP-dependent-DNA-helicase	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
CP032481.1\|AYC78624.1\|1998929_1999430_+\|ferritin	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
CP032481.1\|AYC78632.1\|2007108_2008566_-\|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0

>CP032481.1|AYC78629.1|2003899_2004847_-|Diacylglycerol-kinase
MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIGGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE
>CP032481.1|AYC78628.1|2002457_2003819_-|putative-RNA-methyltransferase
MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIEYKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPAGKNEQNEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMIIFVTNGKKWSQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALFNLK
>CP032481.1|AYC78627.1|2001757_2002288_-|hypothetical-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
>CP032481.1|AYC78626.1|2000441_2001512_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>CP032481.1|AYC78625.1|1999820_2000375_+|putative-DNA-polymerase-III-alpha-chain
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>CP032481.1|AYC78624.1|1998929_1999430_+|ferritin
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>CP032481.1|AYC78623.1|1997324_1998638_-|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYTVLRELGLNEQAIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>CP032481.1|AYC78622.1|1996591_1997323_-|putative-cobyric-acid-synthase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHNFGTLGLVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEKQAKQVLIDRANRQKKSR
>CP032481.1|AYC78621.1|1995953_1996406_-|Hypothetical-protein
MQHEKMNDERNLTMKPTKVILRDASYVHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEIKFEFALFDSDMDNLKHMEYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVTKSDFTKFINELASLH
>CP032481.1|AYC78620.1|1994778_1995765_+|putative-membrane-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>CP032481.1|AYC78630.1|2005483_2005630_-|Hypothetical-protein
MVADLDAIEGLFISIEVILHLTLFIVHVIGKNINFINALALIILRQTV
>CP032481.1|AYC78631.1|2005668_2007096_-|glutamyl-tRNA-amidotransferase-subunit-B
MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETKRIGITRLHMEEDAGKSTHKGEYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELDKR
>CP032481.1|AYC78632.1|2007108_2008566_-|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A
MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDVYEKL
>CP032481.1|AYC78633.1|2008567_2008870_-|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-C
MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNAKETEDGQFKVPTIMNEEDA
>CP032481.1|AYC78634.1|2009235_2010774_+|high-affinity-proline-permease
MLTMGTALSQQVDANWQTYIMIAVYFLILIVIGFYGYKQATGNLSEYMLGGRSIGPYITALSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINYFVVAPRLRVYTELAGDAITLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLDYHFGLILVAFIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMNLNGWGTFHDVAAMKPTNLNLFKGLSFIGIISLFSWGLGYFGQPHIIVRFMSIKSHKMLPKARRLGISWMAVGLLGAVAVGLTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSLTEDFYKLIRGEAKAKTHQKEFVMIGRLSVLVVAIVAIAIAWNPNDTILNLVGNAWAGFGASFSPLVLFALYWKGLTRAGAVSGMVSGALVVIVWIAWIKPLAHINEIFGLYEIIPGFIVSVIVTYVVSKLTKKPGAFVETDLNKVRDIVREK
>CP032481.1|AYC78635.1|2010932_2011286_-|HxlR-family-transcriptional-regulator
MVKICNDGFDENFIEEHRNLYSIAYTQNVLSGRYKNLIIWYLKTEGKRFGEIKKFFANISQGSLTKQLKELESDGILNREVYAEVPPKVIYSLTDKGKDILPLIDLMEKYGRMYGDK
>CP032481.1|AYC78636.1|2011410_2012370_+|Hypothetical-protein
MENRVSKILNIEKPIIQGPMNGLTNANFVASVSEAGGLGILGPNAGEARITNSPFETAEKMRLEVKKVKKLTSKPFASTIMVSEDLSYTSYLIDMLIEENISAVLINGILDQTIFNKLKENNIKIIFRPLTPTIENAIKSEELGADVFVATGFDEGGTVPEKIIGTFSIIPMIADAIKIPVIAAGGIGDVRGVRAAFCLGAEGVFVGSVLIPTFENPAAENVKQYIVDSNAEDLILFRTIPSYYRSLPGKLARELEEMDENGATNEELAKHMGGGRNMRLGMLNGDTENGYVSVGTGISPINSIRSTKSVIDDLMQDFN
>CP032481.1|AYC78637.1|2012611_2013811_-|CamS-sex-pheromone-family-protein
MKRTLVLLITAIFILAACGNHKDDQAGKDNQKHNNSSNQVKEIATDKNVQGDNYRTLLPFKESQARGLLQDNMANSYNGGDFEDGLLNLSKEVFPTDKYLYQDGQFLDKKTINAYLNPKYTKREIDKMSEKDKKDKKANENLGLNPSHEGETDPEKIAEKSPAYLSNILEQDFYGGGDTKGKNIKGMTIGLAMNSVYYYKKEKDGPTFSKKLDDSEVKKQGKQMASEILSRLRENDDLKDIPIHFAIYKQSSEDSITPGEFITQATAEKSQTKLNEWHNINEKSALLPSSTAADYDENLNNNFKQFNDNLQSYFSNFTQAVGKVKFVDKKPQRLVVDLPIDYYGQAETIGITQYVTEQANKYFDKIDNYEIRIKDGNQPRALISKTKDDKEPQVHIYSN
>CP032481.1|AYC78638.1|2013823_2015827_-|DNA-ligase
MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLNVEVRGEAYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHDRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVRIEGEVALRCINPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSELIKDVADIFYLTEEDLLPLDRMGQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAELVEIHDIGDKVAQSVVTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS
>CP032481.1|AYC78639.1|2015830_2018023_-|ATP-dependent-DNA-helicase
MNALLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIEPKAKPFAKRGFSQRTTSTKKQVSSSDWNVGDKVMHKAWGEGMVSNVNEKNGSIELDIIFKSQGPKHLLAQFAPIEKKED

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Crispr_ID: CP032481_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032481_4

2186649-2186737

Orphan

Consensus_repeat	Method
TTACAACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP032481_4

>merge|CP032481|4|2186649-2186737|CRISPRCasFinder
TTACAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTATTTTACAACTTTAGTTGTTAGGGGCTCTTATGCA

>CP032481|4|3|2186649-2186737|CRISPRCasFinder
TTACAACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTATT
TTACAACTTTAGTTGTTAGGGGCTCTTATGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP032481.1\|AYC78804.1\|2199971_2201078_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP032481.1\|AYC78796.1\|2185543_2186635_+\|Lytic-regulatory-protein	unknown	unknown	unknown
CP032481.1\|AYC78795.1\|2184297_2185278_+\|cation-efflux-system-membrane-protein	unknown	unknown	gnl\|CDD\|224151
CP032481.1\|AYC78805.1\|2209126_2210482_-\|Phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
CP032481.1\|AYC78791.1\|2181524_2181755_-\|Hypothetical-protein	unknown	unknown	unknown
CP032481.1\|AYC78800.1\|2193334_2195140_-\|Glutamine--fructose-6-phosphate-aminotransferase-isomerizing	unknown	unknown	gnl\|CDD\|234729
CP032481.1\|AYC78794.1\|2183975_2184296_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP032481.1\|AYC78787.1\|2177132_2177843_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP032481.1\|AYC78790.1\|2179477_2180851_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376640
CP032481.1\|AYC78793.1\|2183158_2183824_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|187554
CP032481.1\|AYC78799.1\|2189260_2191186_-\|ATP-dependent-DNA-helicase-pcrA	unknown	unknown	gnl\|CDD\|223288
CP032481.1\|AYC78792.1\|2181785_2182802_-\|Mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
CP032481.1\|AYC78789.1\|2178606_2179020_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP032481.1\|AYC78801.1\|2195820_2197359_+\|PTS-system-mannitol-specific-IIBC-component	unknown	unknown	gnl\|CDD\|225123
CP032481.1\|AYC78803.1\|2199537_2199972_+\|PTS-system-mannitol-specific-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP032481.1\|AYC78797.1\|2187074_2187932_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|223635
CP032481.1\|AYC78798.1\|2187999_2188782_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP032481.1\|AYC78788.1\|2177963_2178407_-\|general-stress-protein-20U	unknown	unknown	gnl\|CDD\|223854
CP032481.1\|AYC78802.1\|2197393_2199526_+\|putative-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
CP032481.1\|AYC78806.1\|2210508_2211441_-\|YbbR-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|227193

Protein	Function_ID	Function_description	E-value
CP032481.1\|AYC78804.1\|2199971_2201078_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP032481.1\|AYC78794.1\|2183975_2184296_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.54623e-17
CP032481.1\|AYC78795.1\|2184297_2185278_+\|cation-efflux-system-membrane-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	5.87697e-109
CP032481.1\|AYC78805.1\|2209126_2210482_-\|Phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
CP032481.1\|AYC78800.1\|2193334_2195140_-\|Glutamine--fructose-6-phosphate-aminotransferase-isomerizing	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP032481.1\|AYC78787.1\|2177132_2177843_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP032481.1\|AYC78790.1\|2179477_2180851_-\|hypothetical-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.90564e-06
CP032481.1\|AYC78793.1\|2183158_2183824_-\|Hypothetical-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.54377e-47
CP032481.1\|AYC78799.1\|2189260_2191186_-\|ATP-dependent-DNA-helicase-pcrA	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	5.48732e-51
CP032481.1\|AYC78792.1\|2181785_2182802_-\|Mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	1.8931e-129
CP032481.1\|AYC78789.1\|2178606_2179020_-\|Hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	4.41929e-45
CP032481.1\|AYC78801.1\|2195820_2197359_+\|PTS-system-mannitol-specific-IIBC-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP032481.1\|AYC78803.1\|2199537_2199972_+\|PTS-system-mannitol-specific-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP032481.1\|AYC78797.1\|2187074_2187932_-\|Hypothetical-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	4.35599e-58
CP032481.1\|AYC78798.1\|2187999_2188782_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	5.40486e-98
CP032481.1\|AYC78788.1\|2177963_2178407_-\|general-stress-protein-20U	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.87929e-68
CP032481.1\|AYC78802.1\|2197393_2199526_+\|putative-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.07884e-67
CP032481.1\|AYC78806.1\|2210508_2211441_-\|YbbR-like-domain-containing-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	5.68856e-117

>CP032481.1|AYC78796.1|2185543_2186635_+|Lytic-regulatory-protein
MFTYFKSALKNAKPQLLITLIYAIIAFAVIAGVYLLANFQLAKYVQTIAIYSQFGQKPPGDAYLKAIAILLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGIYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDNKVVTEPKNTKVETDKVTTSVETKTEKAQDSLIDNTTKTMTSDKPEDNQPK
>CP032481.1|AYC78795.1|2184297_2185278_+|cation-efflux-system-membrane-protein
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALIAFIYAEKNATATKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHIIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHQAHHHAHVH
>CP032481.1|AYC78794.1|2183975_2184296_+|ArsR-family-transcriptional-regulator
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGKSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP032481.1|AYC78793.1|2183158_2183824_-|Hypothetical-protein
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFEGKGEIPREDVATVLKEIVTSNHFNHQEFQVISGEQDIKDALTQFENETD
>CP032481.1|AYC78792.1|2181785_2182802_-|Mannose-6-phosphate-isomerase
MRTKSKYNGTTTSEFYCLLNHNGGATMPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP032481.1|AYC78791.1|2181524_2181755_-|Hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP032481.1|AYC78790.1|2179477_2180851_-|hypothetical-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTVYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP032481.1|AYC78789.1|2178606_2179020_-|Hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIQLITALPNRTKLLSVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP032481.1|AYC78788.1|2177963_2178407_-|general-stress-protein-20U
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLEKAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP032481.1|AYC78787.1|2177132_2177843_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP032481.1|AYC78797.1|2187074_2187932_-|Hypothetical-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLIEKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKHQQIYYEVFPFEGNRVSLKEDETWMRDMICSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLAKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGINQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTTYTNEEDGAAKYLAKHFLAD
>CP032481.1|AYC78798.1|2187999_2188782_-|ABC-transporter-ATP-binding-protein
MLITLNHVGRLKQGKPILQDVSWQIDEGDKWVLYGLNGAGKTTLLNILNTYEPATSGTVNLFGKMPGKLGYSAENVRQQIGFVSHSLLEKFQEGETVIDVVMSGAFKSIGLYKNVDDDIISEAHQLLKLVEMSDKAQQFIGYLSTGEKQRVMIARALMGQPRILILDEPAAGLDFIARESLLNILDSLSDTYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSYFFQKNVAVQKWNNRFSMAMLE
>CP032481.1|AYC78799.1|2189260_2191186_-|ATP-dependent-DNA-helicase-pcrA
MNNRILEDEWKPSDDVTLEDSALHAIRASSHVAIAAGPGAGKTELLAHKAGYLIETGMCPYPKKILAISFKTDAARNLQERVELRYGKGVEKRFESKTFDAFAKGILDQFIHALPKEYQPQKNYEIILNEKSLNDIINAYITEPYSYYSNWQYEYHINSVLRTMKETKLPIVSFEDDLYSWINERLWMALLNGKGNLKSSLTFSMISILVEYLLKENPLLVKALQATYSHVFLDEFQDTTHIQYNLLKTIFLKSNTVITAVGDNKQRIMGWAGALQNAFGIFKTDFNATQYTLLNNFRSAPNLVYIQNIFSKTLNDASIEVLPAGEWNKNEGVCEIWNFKNHNIEAILLASYISKWMKVENLKPRDFCIIVKQHEHIYAAEIMKELSKINIKSRIEKDYQDLLSEELVLLIIRFLKLSYEEKSPELWLNVIDEIIDMKYSDADFESINYLIIEKELVKMLDEVRKLYSNINDTNFNTQFAEILQEIVVFLGEDIIKATYPKYNQANYFNEVMQKMIDKLQYQNCISMRGLVQEFCGEYSIPIMTIHKSKGLEYHTVFFIGVEDDAFWSFSTQKEADKNAFFVALSRAKQKIIFTISEKRNILKFGEEKNILQETKNISELIQTLMDAGVPLIEKSGLDNIL
>CP032481.1|AYC78800.1|2193334_2195140_-|Glutamine--fructose-6-phosphate-aminotransferase-isomerizing
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVTLQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP032481.1|AYC78801.1|2195820_2197359_+|PTS-system-mannitol-specific-IIBC-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIVGFKVLAPIMKFIMYILSVAVESLVHAHLLPVVSILVEPAKILFLNNAINHGVFTPLGTDQAAKVGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKTPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP032481.1|AYC78802.1|2197393_2199526_+|putative-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGEDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVKKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDIDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAEQLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNEFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP032481.1|AYC78803.1|2199537_2199972_+|PTS-system-mannitol-specific-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP032481.1|AYC78804.1|2199971_2201078_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP032481.1|AYC78805.1|2209126_2210482_-|Phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVFETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>CP032481.1|AYC78806.1|2210508_2211441_-|YbbR-like-domain-containing-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEYVTKAQPSETKAYINVK

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Crispr_ID: CP032481_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032481_5

2310287-2310366

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTATGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032481_5

>merge|CP032481|5|2310287-2310366|CRISPRCasFinder
CCAACTTGCACATTATTGTATGCTGACTTTTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTG

>CP032481|5|4|2310287-2310366|CRISPRCasFinder
CCAACTTGCACATTATTGTATGCTG	ACTTTTGTCAGCTTCTGTGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTG

Protein	Signature genes	Signature genes Name	Protein_function
CP032481.1\|AYC78897.1\|2301148_2301466_+\|Hypothetical-protein	unknown	unknown	unknown
CP032481.1\|AYC78906.1\|2312195_2312429_-\|molybdopterin-converting-factor-small-subunit	unknown	unknown	gnl\|CDD\|340452
CP032481.1\|AYC78904.1\|2310547_2311570_-\|molybdopterin-guanine-dinucleotide-biosynthesis	unknown	unknown	gnl\|CDD\|274250
CP032481.1\|AYC78898.1\|2301652_2304820_-\|Swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP032481.1\|AYC78908.1\|2312894_2313380_-\|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP032481.1\|AYC78895.1\|2299708_2300617_-\|Permease	unknown	unknown	gnl\|CDD\|223751
CP032481.1\|AYC78900.1\|2306833_2307598_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|379203
CP032481.1\|AYC78902.1\|2308194_2309406_+\|Drug-transporter	unknown	unknown	gnl\|CDD\|341042
CP032481.1\|AYC78896.1\|2300749_2300914_+\|Hypothetical-protein	unknown	unknown	unknown
CP032481.1\|AYC78912.1\|2315731_2316736_-\|Molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|181084
CP032481.1\|AYC78913.1\|2316904_2317510_-\|molybdenum-transport-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226628
CP032481.1\|AYC78903.1\|2309506_2309857_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130944
CP032481.1\|AYC78899.1\|2304936_2306202_-\|Lipid-II:glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP032481.1\|AYC78909.1\|2313376_2314636_-\|molybdopterin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238452
CP032481.1\|AYC78894.1\|2298426_2299290_+\|putative-glucose-uptake-protein-glcU	unknown	unknown	gnl\|CDD\|227309
CP032481.1\|AYC78905.1\|2311589_2312189_-\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP032481.1\|AYC78911.1\|2315194_2315701_-\|molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223595
CP032481.1\|AYC78910.1\|2314698_2315193_+\|molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|236483
CP032481.1\|AYC78901.1\|2307761_2308202_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197670
CP032481.1\|AYC78907.1\|2312434_2312881_-\|Molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391

Protein	Function_ID	Function_description	E-value
CP032481.1\|AYC78906.1\|2312195_2312429_-\|molybdopterin-converting-factor-small-subunit	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	5.99629e-25
CP032481.1\|AYC78904.1\|2310547_2311570_-\|molybdopterin-guanine-dinucleotide-biosynthesis	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
CP032481.1\|AYC78898.1\|2301652_2304820_-\|Swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP032481.1\|AYC78908.1\|2312894_2313380_-\|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	1.7369e-49
CP032481.1\|AYC78895.1\|2299708_2300617_-\|Permease	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	6.73408e-43
CP032481.1\|AYC78900.1\|2306833_2307598_-\|Hypothetical-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	6.28857e-38
CP032481.1\|AYC78902.1\|2308194_2309406_+\|Drug-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.27961e-72
CP032481.1\|AYC78912.1\|2315731_2316736_-\|Molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	1.97922e-131
CP032481.1\|AYC78913.1\|2316904_2317510_-\|molybdenum-transport-ATP-binding-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	4.38506e-114
CP032481.1\|AYC78903.1\|2309506_2309857_-\|hypothetical-protein	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP032481.1\|AYC78899.1\|2304936_2306202_-\|Lipid-II:glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	2.10067e-141
CP032481.1\|AYC78909.1\|2313376_2314636_-\|molybdopterin-biosynthesis-protein	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	7.5325e-158
CP032481.1\|AYC78894.1\|2298426_2299290_+\|putative-glucose-uptake-protein-glcU	gnl\|CDD\|227309	COG4975, GlcU, Putative glucose uptake permease [Carbohydrate transport and metabolism].	8.52273e-114
CP032481.1\|AYC78905.1\|2311589_2312189_-\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	1.16452e-66
CP032481.1\|AYC78911.1\|2315194_2315701_-\|molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	3.92413e-65
CP032481.1\|AYC78910.1\|2314698_2315193_+\|molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	4.27584e-97
CP032481.1\|AYC78901.1\|2307761_2308202_+\|hypothetical-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
CP032481.1\|AYC78907.1\|2312434_2312881_-\|Molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58

>CP032481.1|AYC78903.1|2309506_2309857_-|hypothetical-protein
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP032481.1|AYC78902.1|2308194_2309406_+|Drug-transporter
MTNQGSLNKSPIFTKSFTINFLVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP032481.1|AYC78901.1|2307761_2308202_+|hypothetical-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP032481.1|AYC78900.1|2306833_2307598_-|Hypothetical-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQIEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWYDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP032481.1|AYC78899.1|2304936_2306202_-|Lipid-II:glycine-glycyltransferase
MEKMHITNQEHDAFVKSRPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEIQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP032481.1|AYC78898.1|2301652_2304820_-|Swarming-motility-protein-SwrC
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASASNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP032481.1|AYC78897.1|2301148_2301466_+|Hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVIFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP032481.1|AYC78896.1|2300749_2300914_+|Hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP032481.1|AYC78895.1|2299708_2300617_-|Permease
MTEQFTMIILLIALGYFLKRINYIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQEVFV
>CP032481.1|AYC78894.1|2298426_2299290_+|putative-glucose-uptake-protein-glcU
MQFLDFLIALLPALFWGSVVLINVFVGGGPYNQIRGTTLGALIVGLGLLITGFAKFNNPTVIIVGLISGALWAFGQANQLKSISLIGVSNTMPVSTGMQLVGTTLFSVIFLGEWSSMTQIIFGLIAMILLVTGVALTSLKAKNERQSDNPEFKKAMGILIVSTIGYVGFVVLGDIFGVGGTDALFFQSVGMAIGGFILSMNHKTSLKSTALNLFPGVIWGIGNLFMFYSQPKVGVATSFSLSQLLVIVSTLGGIFILGERKDRRQMTGIWAGIIIIVIAAIILGNLK
>CP032481.1|AYC78904.1|2310547_2311570_-|molybdopterin-guanine-dinucleotide-biosynthesis
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP032481.1|AYC78905.1|2311589_2312189_-|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDARDVDAPSYWYKNINYQHDLDALIQKL
>CP032481.1|AYC78906.1|2312195_2312429_-|molybdopterin-converting-factor-small-subunit
MKVLYFAEIKDILQKAQEDIMLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP032481.1|AYC78907.1|2312434_2312881_-|Molybdopterin-synthase-catalytic-subunit
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP032481.1|AYC78908.1|2312894_2313380_-|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRYIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP032481.1|AYC78909.1|2313376_2314636_-|molybdopterin-biosynthesis-protein
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALELFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP032481.1|AYC78910.1|2314698_2315193_+|molybdenum-cofactor-biosynthesis-protein
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIYKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKSMIIGETYLESKSGGKSGDFQRQSGQ
>CP032481.1|AYC78911.1|2315194_2315701_-|molybdenum-cofactor-biosynthesis-protein
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITMQVKKWLKEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP032481.1|AYC78912.1|2315731_2316736_-|Molybdopterin-biosynthesis-protein-MoeB
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSACTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP032481.1|AYC78913.1|2316904_2317510_-|molybdenum-transport-ATP-binding-protein
MLKINLKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAQNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP032481_5	5.1\|2310312\|30\|CP032481\|CRISPRCasFinder	2310312-2310341	30	CP032481.1	2310198-2310227	1	0.967
CP032481_3	3.1\|2004967\|39\|CP032481\|CRT	2004967-2005005	39	CP032481.1	1155515-1155553	2	0.949
CP032481_3	3.1\|2004967\|39\|CP032481\|CRT	2004967-2005005	39	CP032481.1	2310242-2310280	2	0.949

1. spacer 5.1|2310312|30|CP032481|CRISPRCasFinder matches to position: 2310198-2310227, mismatch: 1, identity: 0.967

acttttgtcagcttctgtgttggggccccg	CRISPR spacer
acttttgtcaacttctgtgttggggccccg	Protospacer
**********.*******************

2. spacer 3.1|2004967|39|CP032481|CRT matches to position: 1155515-1155553, mismatch: 2, identity: 0.949

ctgtagaatttccttttgaaattctctatgttgggggcc	CRISPR spacer
ctgtagaatttctttttgaaattctctatgttggggccc	Protospacer
************.*********************** **

3. spacer 3.1|2004967|39|CP032481|CRT matches to position: 2310242-2310280, mismatch: 2, identity: 0.949

ctgtagaatttccttttgaaattctctatgttgggggcc	CRISPR spacer
ctgtagaatttctttttgaaattctctatgttggggccc	Protospacer
************.*********************** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

328384 : 371113

Staphylococcus_phage(68.63%)

tail,integrase,portal,holin,protease

attL 328273:328291|attR 373283:373301

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
328273:328291	attL	NA	NA	NA	NA
AYC77100.1\|328384_329590_-\|integrase	Prophage L54a, integrase	A0A1X9H094	Staphylococcus_phage	4.8e-217	97.8
AYC77101.1\|329692_330343_-	Hypothetical protein	NA	NA	NA	NA
AYC77102.1\|330815_331199_-	hypothetical protein	A0A2D1G561	Staphylococcus_phage	1.1e-18	92.2
AYC77103.1\|331298_331910_-	Transcriptional repressor	B5WZL2	Staphylococcus_phage	9.3e-100	88.2
AYC77104.1\|332362_332506_+	Phage protein	W5R8I6	Staphylococcus_phage	2.1e-15	97.9
AYC77105.1\|332738_333002_+	Phage protein	B7T0G2	Staphylococcus_virus	4.1e-44	96.6
AYC77106.1\|333014_333176_+	Phage protein	A9CR58	Staphylococcus_phage	1.1e-20	98.1
AYC77107.1\|333253_333577_+	Phage protein	B7T0G4	Staphylococcus_virus	8.5e-52	100.0
AYC77108.1\|333591_333954_+	Hypothetical protein	A7TWG3	Staphylococcus_phage	3.5e-54	96.7
AYC77109.1\|333950_335117_+	Phage protein	B7T0G6	Staphylococcus_virus	5.0e-219	97.9
AYC77110.1\|335142_335700_+	Hypothetical protein	A0A2K9VBT2	Staphylococcus_phage	6.7e-97	99.5
AYC77111.1\|335760_337722_+	DNA polymerase	M9QT72	Staphylococcus_phage	0.0e+00	99.1
AYC77112.1\|337734_337920_+	Phage protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AYC77113.1\|337919_338321_+	PVL family protein	A0A2I6PEL5	Staphylococcus_phage	1.6e-68	99.2
AYC77114.1\|338320_338575_+	Phage protein	B7T0H1	Staphylococcus_virus	8.2e-42	97.6
AYC77115.1\|338580_338823_+	Hypothetical protein	A0A2I6PF06	Staphylococcus_phage	5.0e-41	100.0
AYC77116.1\|339247_339523_+	Phage protein	Q4ZA41	Staphylococcus_virus	1.3e-45	100.0
AYC77117.1\|339607_339769_+	Phage protein	A0A2I6PDI5	Staphylococcus_phage	6.1e-19	90.6
AYC77118.1\|339755_339926_+	Hypothetical protein	A7TWH6	Staphylococcus_phage	1.8e-21	94.6
AYC77119.1\|339918_340425_+	Hypothetical protein	Q4ZDP4	Staphylococcus_virus	1.9e-90	99.4
AYC77120.1\|340461_340746_+	Hypothetical protein	NA	NA	NA	NA
AYC77121.1\|340965_341172_+	Hypothetical protein	Q4ZCV6	Staphylococcus_virus	7.1e-20	98.5
AYC77122.1\|341168_341321_+	Transcriptional regulator	Q4ZCV4	Staphylococcus_virus	4.4e-19	98.0
AYC77123.1\|341388_341589_+	Phage protein	A0A2I6PF41	Staphylococcus_phage	4.9e-26	98.5
AYC77124.1\|341640_344088_+	Hypothetical protein	B7T0I3	Staphylococcus_virus	0.0e+00	98.7
AYC77125.1\|344111_344234_-	Phage protein	Q4ZCF9	Staphylococcus_virus	9.0e-15	92.5
AYC77126.1\|344428_344719_+	Phage protein	A0A2I6PEN7	Staphylococcus_phage	6.5e-51	100.0
AYC77127.1\|345389_346067_+	Hypothetical protein	B7T0I5	Staphylococcus_virus	1.5e-119	96.9
AYC77128.1\|346079_346517_+	Phage regulatory protein	A0A2I6PEN3	Staphylococcus_phage	7.9e-77	100.0
AYC77129.1\|346673_346988_+	HNH endonuclease	M9QQL5	Staphylococcus_phage	2.5e-56	100.0
AYC77130.1\|347114_347420_+	Phage protein	A0A2I6PEQ6	Staphylococcus_phage	3.2e-48	99.0
AYC77131.1\|349106_350345_+\|portal	Phage portal protein	A0A2K9VBP0	Staphylococcus_phage	1.5e-234	99.8
AYC77132.1\|350328_351102_+\|protease	Prophage Clp protease-like protein	A0A2I6PE26	Staphylococcus_phage	4.2e-137	99.2
AYC77133.1\|351113_352277_+	Phage protein	Q4ZCT8	Staphylococcus_virus	3.7e-214	97.9
AYC77134.1\|352345_352624_+	Phage protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AYC77135.1\|352635_352968_+	Hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	2.0e-56	96.4
AYC77136.1\|352964_353366_+	hypothetical protein	A0A0K1LL98	Staphylococcus_phage	1.2e-66	98.5
AYC77137.1\|353366_353762_+	hypothetical protein	A0A0K1LKC0	Staphylococcus_phage	7.4e-66	98.5
AYC77138.1\|353796_354438_+\|tail	Phage major tail protein	A0A2I6PE59	Staphylococcus_phage	2.1e-118	97.7
AYC77139.1\|354529_354985_+\|tail	Phage major tail protein	Q9B0D4	Staphylococcus_phage	4.1e-76	98.7
AYC77140.1\|355042_355393_+	Hypothetical protein	A0A2I6PDE6	Staphylococcus_phage	3.1e-55	99.1
AYC77141.1\|355434_355593_+	Phage protein	A0A2I6PES8	Staphylococcus_phage	1.5e-17	86.5
AYC77142.1\|355606_361807_+	Tail-length tape measure protein	Q4ZCL0	Staphylococcus_virus	0.0e+00	97.1
AYC77143.1\|361806_362631_+	Hypothetical protein	B7T0K2	Staphylococcus_virus	1.3e-157	98.5
AYC77144.1\|362639_364223_+	Hypothetical protein	Q8SDP1	Staphylococcus_virus	8.7e-307	99.4
AYC77145.1\|364222_364513_+	Phage protein	A0A2I6PF46	Staphylococcus_phage	2.1e-49	100.0
AYC77146.1\|364528_366439_+	Hypothetical protein	A0A2I6PF35	Staphylococcus_phage	0.0e+00	99.5
AYC77147.1\|366438_367905_+	Phage protein	A0A2I6PDQ5	Staphylococcus_phage	5.3e-250	97.1
AYC77148.1\|367904_368294_+	Hypothetical protein	M9QYR4	Staphylococcus_phage	1.3e-59	94.6
AYC77149.1\|368286_368451_+	Phage protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AYC77150.1\|368496_368796_+	Phage protein	M9QRV2	Staphylococcus_phage	2.2e-30	98.0
AYC77151.1\|369344_369647_+\|holin	phage holin	B7T0L0	Staphylococcus_virus	8.5e-46	93.0
AYC77152.1\|369658_371113_+	Hypothetical protein	A0A0N6WMR3	Staphylococcus_phage	3.1e-279	95.9
373283:373301	attR	NA	NA	NA	NA

DBSCAN-SWA_2

416162 : 432163

Staphylococcus_phage(95.0%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC77195.1\|416162_416354_-	Hypothetical protein	U3PCX8	Staphylococcus_phage	4.9e-23	80.0
AYC77196.1\|416615_416894_+	ribosomal protein S6	NA	NA	NA	NA
AYC77197.1\|416914_417418_+	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.2e-60	74.7
AYC77198.1\|417469_417712_+	30S ribosomal protein S18	NA	NA	NA	NA
AYC77199.1\|417952_419266_-	Integrase	Q4ZE80	Staphylococcus_phage	8.2e-210	89.0
AYC77200.1\|419721_420417_-	Transcriptional regulator	Q4ZE79	Staphylococcus_phage	2.3e-09	62.5
AYC77201.1\|420560_420773_+	Transcriptional regulator	Q4ZE78	Staphylococcus_phage	2.6e-17	61.4
AYC77202.1\|420773_421046_+	Pathogenicity island protein	Q4ZE77	Staphylococcus_phage	3.9e-42	92.2
AYC77203.1\|421057_421204_+	Hypothetical protein	NA	NA	NA	NA
AYC77204.1\|421196_421406_+	HPathogenicity island protein	Q4ZE76	Staphylococcus_phage	5.3e-31	98.6
AYC77205.1\|421408_421735_+	Mobile element-associated protein	Q4ZE75	Staphylococcus_phage	2.3e-49	89.8
AYC77206.1\|421799_422669_+	Pathogenicity island protein	Q4ZE74	Staphylococcus_phage	6.1e-161	93.8
AYC77207.1\|422682_424392_+	Hypothetical protein	Q4ZE73	Staphylococcus_phage	0.0e+00	99.6
AYC77208.1\|424703_425084_+	Pathogenicity island protein	Q4ZE71	Staphylococcus_phage	6.9e-69	100.0
AYC77209.1\|425080_425722_+	Hypothetical protein	Q4ZE67	Staphylococcus_phage	1.6e-110	93.0
AYC77210.1\|426068_426410_+	Hypothetical protein	Q4ZE66	Staphylococcus_phage	8.4e-58	99.1
AYC77211.1\|426421_427000_+	Hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	3.7e-29	38.4
AYC77212.1\|427017_427236_+	putative mobile element-associated protein	NA	NA	NA	NA
AYC77213.1\|427286_427814_+\|coat	Spore coat protein	Q4ZE87	Staphylococcus_phage	6.8e-83	92.0
AYC77214.1\|427816_428158_+	Hypothetical protein	A0A1W6JQM3	Staphylococcus_phage	1.6e-56	96.5
AYC77215.1\|428154_428724_+	Terminase small subunit	Q4ZE85	Staphylococcus_phage	1.5e-99	96.3
AYC77216.1\|428830_429181_+	Hypothetical protein	A7TWS0	Staphylococcus_phage	2.1e-19	50.4
AYC77217.1\|429439_430939_+	Factor-binding protein VWbp	NA	NA	NA	NA
AYC77218.1\|431349_431532_+	Hypothetical protein	Q4ZE84	Staphylococcus_phage	4.6e-23	98.3
AYC77219.1\|431650_432163_+	Hypothetical protein	Q4ZE83	Staphylococcus_phage	5.5e-69	99.4

DBSCAN-SWA_3

780478 : 788298

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC77530.1\|780478_781534_-	Histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
AYC77531.1\|781533_782220_-	DNA-binding response regulator SaeR	NA	NA	NA	NA
AYC77532.1\|782194_782668_-	DoxX family protein	NA	NA	NA	NA
AYC77533.1\|783009_783450_-	Hypothetical protein	NA	NA	NA	NA
AYC77534.1\|783729_784314_-	Hypothetical protein	NA	NA	NA	NA
AYC77535.1\|784412_785126_-	coenzyme PQQ synthesis-like protein	A0A1U9WRB6	Streptococcus_virus	5.0e-52	43.5
AYC77536.1\|785129_785549_-	6-carboxytetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
AYC77537.1\|785550_786219_-	aluminum resistance protein	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AYC77538.1\|786569_787163_+	para-aminobenzoate synthase, glutamine amidotransferase, component II	A0A0P0IKJ1	Acinetobacter_phage	5.8e-38	42.9
AYC77539.1\|787146_788298_+	Para-aminobenzoate synthase, aminase component	S4VNU7	Pandoravirus	1.6e-23	36.1

DBSCAN-SWA_4

803971 : 814815

uncultured_Caudovirales_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC77551.1\|803971_805477_-	Di-tripeptide ABC transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AYC77552.1\|808003_808402_+	Ribonucleotide reduction protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AYC77553.1\|808364_810470_+	ribonucleoside-diphosphate reductase, alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AYC77554.1\|810587_811559_+	ribonucleoside-diphosphate reductase	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AYC77555.1\|811948_812104_+	Hypothetical protein	NA	NA	NA	NA
AYC77556.1\|812142_813114_+	iron compound ABC transporter, permease protein	A0A2H4IY97	uncultured_Caudovirales_phage	6.2e-138	78.6
AYC77557.1\|813100_814057_+	iron compound ABC transporter, permease protein	A0A2H4J116	uncultured_Caudovirales_phage	7.2e-06	60.0
AYC77558.1\|814053_814815_+	Iron compound ABC transporter, ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	5.0e-18	31.6

DBSCAN-SWA_5

1595314 : 1603626

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC78245.1\|1595314_1596100_-	High-affinity zinc uptake system ATP-binding protein znuC	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
AYC78246.1\|1596225_1597116_-	endonuclease	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
AYC78247.1\|1597125_1598472_-	DEAD-box ATP-dependent RNA helicase CshB	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
AYC78248.1\|1598585_1599686_-	GTP cyclohydrolase 1 type 2	A0A1S5V250	Saudi_moumouvirus	1.0e-08	30.6
AYC78249.1\|1599688_1600366_-	Hypothetical protein	NA	NA	NA	NA
AYC78250.1\|1600496_1601603_-	RNA polymerase sigma factor	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AYC78251.1\|1601826_1603626_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-54	36.0

DBSCAN-SWA_6

1673279 : 1682322

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC78321.1\|1673279_1673798_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-28	45.8
AYC78322.1\|1673819_1676093_-	single-strand DNA-specific exonuclease	A7KV88	Bacillus_phage	4.7e-64	29.5
AYC78323.1\|1676295_1678575_-	Multifunctional fusion protein	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AYC78324.1\|1678849_1679110_-	Protein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AYC78325.1\|1679128_1680268_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AYC78326.1\|1680290_1681334_-\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AYC78327.1\|1681317_1682322_-	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_7

1806055 : 1852518

Staphylococcus_phage(94.29%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC78432.1\|1806055_1812520_-	Peptidase	A0A2H4PQU6	Staphylococcus_phage	1.8e-302	95.7
AYC78433.1\|1812846_1813158_-	Rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	5.0e-49	95.1
AYC78434.1\|1813179_1815597_-\|tRNA	Leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
AYC78435.1\|1815884_1817066_-	Multidrug resistance protein B	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
AYC78436.1\|1817175_1818129_+	Hypothetical protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AYC78437.1\|1818125_1818689_+	Hypothetical protein	A0A2H4PQV0	Staphylococcus_phage	1.2e-101	98.9
AYC78438.1\|1818808_1819210_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AYC78439.1\|1819783_1820611_-	Alpha/beta hydrolase	NA	NA	NA	NA
AYC78440.1\|1820844_1821846_+	putative proline oxidase	A0A2H4PQT6	Staphylococcus_phage	4.5e-184	99.4
AYC78441.1\|1821967_1822432_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AYC78442.1\|1822444_1823626_-	Riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	8.6e-227	99.5
AYC78443.1\|1823636_1824269_-	riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	1.1e-111	98.6
AYC78444.1\|1824275_1825319_-	Riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	3.1e-196	99.1
AYC78445.1\|1825799_1827302_-	Hypothetical protein	A0A2H4PQX2	Staphylococcus_phage	1.1e-29	98.6
AYC78446.1\|1828137_1829430_+	arsenic efflux pump protein	A0A2H4PQU3	Staphylococcus_phage	1.0e-225	98.1
AYC78447.1\|1829447_1829843_+	arsenate reductase	A0A2H4PQT9	Staphylococcus_phage	2.4e-72	99.2
AYC78448.1\|1830191_1831046_-	Autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AYC78449.1\|1831321_1831546_-	Hypothetical protein	NA	NA	NA	NA
AYC78450.1\|1831666_1832215_+	Hypothetical protein	A0A2H4PQT5	Staphylococcus_phage	5.1e-81	97.4
AYC78451.1\|1832327_1832771_+	Competence protein ComK	NA	NA	NA	NA
AYC78452.1\|1832757_1833201_-	Hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AYC78453.1\|1833396_1834134_+\|protease	CAAX amino terminal protease family	NA	NA	NA	NA
AYC78454.1\|1834559_1835273_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AYC78455.1\|1835530_1835833_+	Hypothetical protein	NA	NA	NA	NA
AYC78456.1\|1836010_1836454_+	Fluoride ion transporter CrcB 1	A0A2H4PQR0	Staphylococcus_phage	7.6e-59	98.3
AYC78457.1\|1836450_1836804_+	putative membrane protein	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
AYC78458.1\|1837053_1837887_-	Aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.7e-158	99.3
AYC78459.1\|1838098_1839007_-	Hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	4.4e-138	99.7
AYC78460.1\|1840635_1841829_-	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AYC78461.1\|1842200_1843793_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
AYC78462.1\|1844089_1844860_-	Dipeptidyl aminopeptidases/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	1.6e-141	98.0
AYC78463.1\|1844840_1845320_-	Hypothetical protein	A0A2H4PQM4	Staphylococcus_phage	1.9e-84	98.1
AYC78464.1\|1845379_1845637_+	Membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AYC78465.1\|1845633_1846635_-	O-succinylbenzoate-CoA ligase	A0A2H4PQM0	Staphylococcus_phage	1.9e-182	96.7
AYC78466.1\|1846639_1848118_-	2-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	8.4e-280	96.7
AYC78467.1\|1848276_1848759_-	Hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	2.3e-77	96.6
AYC78468.1\|1849070_1849685_+	Hypothetical protein	A0A2H4PQM8	Staphylococcus_phage	1.2e-41	76.5
AYC78469.1\|1849765_1850761_+	putative membrane protein	A0A2H4PQN2	Staphylococcus_phage	4.3e-70	95.6
AYC78470.1\|1850836_1851463_+	putative lipoprotein	A0A2H4PQM7	Staphylococcus_phage	7.4e-76	80.8
AYC78471.1\|1851503_1851848_+	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	95.6
AYC78472.1\|1851945_1852518_+	Hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8

DBSCAN-SWA_8

1857860 : 1878826

Staphylococcus_phage(93.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC78479.1\|1857860_1861973_-	Hypothetical protein	A0A2H4PQT3	Staphylococcus_phage	0.0e+00	98.5
AYC78480.1\|1862735_1863935_-	Type I restriction-modification system, DNA-methyltransferase subunit M	A0A2H4PQP5	Staphylococcus_phage	3.7e-225	97.7
AYC78481.1\|1863927_1865484_-	Type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.4e-287	98.8
AYC78482.1\|1865837_1866521_-	serine proteinase	A0A2H4PQP1	Staphylococcus_phage	1.3e-118	93.4
AYC78483.1\|1866706_1867423_-\|protease	Serine protease	A0A2H4PQN5	Staphylococcus_phage	1.0e-129	97.9
AYC78484.1\|1867547_1868231_-	serine proteinase	A0A2H4PQP7	Staphylococcus_phage	4.2e-109	86.3
AYC78485.1\|1868324_1869047_-\|protease	Serine protease	A0A2H4PQN0	Staphylococcus_phage	3.5e-114	84.6
AYC78486.1\|1869104_1869827_-\|protease	Serine protease	A0A2H4PQN0	Staphylococcus_phage	9.0e-126	94.6
AYC78487.1\|1869951_1870659_-\|protease	Serine protease	A0A2H4PQN3	Staphylococcus_phage	8.2e-124	96.2
AYC78488.1\|1871617_1872199_+	putative beta-lactamase	A0A2H4PQH6	Staphylococcus_phage	1.9e-49	60.1
AYC78489.1\|1872672_1872798_-	Hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	4.2e-07	65.9
AYC78490.1\|1873131_1873605_+	hypothetical protein	NA	NA	NA	NA
AYC78491.1\|1873609_1874401_+	hypothetical protein	NA	NA	NA	NA
AYC78492.1\|1874387_1874513_-	Hypothetical protein	NA	NA	NA	NA
AYC78493.1\|1874769_1875753_-	Leukotoxin F-subunit	A0A2H4PQH7	Staphylococcus_phage	1.5e-184	98.5
AYC78494.1\|1875754_1876675_-	Leukotoxin LukE	A0A2H4PQI5	Staphylococcus_phage	1.8e-171	98.4
AYC78495.1\|1877364_1877502_-	Hypothetical protein	NA	NA	NA	NA
AYC78496.1\|1877569_1877974_+	Hypothetical protein	Q4ZCB9	Staphylococcus_virus	3.4e-58	82.1
AYC78497.1\|1878037_1878826_+	Hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	2.8e-141	95.8

DBSCAN-SWA_9

1909163 : 1984486

Staphylococcus_phage(61.54%)

tail,integrase,protease,head,terminase,tRNA

attL 1951508:1951522|attR 1986043:1986057

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC78524.1\|1909163_1909634_-\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
AYC78525.1\|1909638_1910766_-	Epoxyqueuosine (oQ) reductase QueG	NA	NA	NA	NA
AYC78526.1\|1910916_1911645_-	Glutamate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-36	42.7
AYC78527.1\|1911631_1913089_-	Arginine-binding protein	NA	NA	NA	NA
AYC78528.1\|1913346_1914408_-	putative membrane protein	NA	NA	NA	NA
AYC78529.1\|1923209_1923656_-	Peroxide-responsive repressor PerR	NA	NA	NA	NA
AYC78530.1\|1923752_1924679_-	Hypothetical protein	NA	NA	NA	NA
AYC78531.1\|1924708_1925164_-	Thioredoxin peroxidase	NA	NA	NA	NA
AYC78532.1\|1925244_1926534_+	glutamate-1-semialdehyde aminotransferase	NA	NA	NA	NA
AYC78533.1\|1926877_1927921_+	putative membrane protein	NA	NA	NA	NA
AYC78534.1\|1928110_1929847_-	Multidrug export ATP-binding	W8CYL7	Bacillus_phage	1.2e-51	30.0
AYC78535.1\|1930137_1930680_-	UPF0374 protein	NA	NA	NA	NA
AYC78536.1\|1930982_1932020_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
AYC78537.1\|1932171_1933149_+	putative membrane protein	NA	NA	NA	NA
AYC78538.1\|1933409_1934246_-	Hypothetical protein	NA	NA	NA	NA
AYC78539.1\|1934254_1935772_-	putative membrane protein	NA	NA	NA	NA
AYC78540.1\|1935786_1936077_-	regulatory protein	NA	NA	NA	NA
AYC78541.1\|1936078_1936897_-	Regulatory protein RecX	NA	NA	NA	NA
AYC78542.1\|1937157_1937967_-	monofunctional glycosyltransferase	NA	NA	NA	NA
AYC78543.1\|1938242_1938929_+	DNA-binding protein	A0A0C5AJ29	Paenibacillus_phage	2.1e-23	37.3
AYC78544.1\|1938952_1939741_+	Insertion element protein	A0A0C5AEA5	Paenibacillus_phage	1.5e-49	51.9
AYC78545.1\|1939909_1940425_-	Hypothetical protein	NA	NA	NA	NA
AYC78546.1\|1940554_1940716_-	Hypothetical protein	NA	NA	NA	NA
AYC78547.1\|1941176_1942178_-	Hypothetical protein	A0A1W6JNN3	Staphylococcus_phage	1.0e-55	40.1
AYC78548.1\|1944384_1945353_-	Panton-Valentine leukocidin LukF-PV chain precursor	Q9MBN2	Staphylococcus_prophage	2.0e-181	100.0
AYC78549.1\|1945354_1946281_-	leukocidin chain lukM precursor	Q9MBN3	Staphylococcus_prophage	4.2e-176	99.7
AYC78550.1\|1946628_1947384_-	Amidase	Q9MBN4	Staphylococcus_prophage	4.9e-151	99.2
AYC78551.1\|1947395_1947650_-	Holin	Q9MBN5	Staphylococcus_prophage	5.3e-41	100.0
AYC78552.1\|1948188_1948419_-	Hypothetical protein	D2JLG2	Staphylococcus_phage	5.9e-31	97.4
AYC78553.1\|1948542_1948830_-	Hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AYC78554.1\|1948876_1949029_-	Phage protein	D2JLG0	Staphylococcus_phage	1.2e-19	98.0
AYC78555.1\|1949018_1952804_-	Phage minor structural protein	D2JLF9	Staphylococcus_phage	0.0e+00	97.3
1951508:1951522	attL	NA	NA	NA	NA
AYC78556.1\|1952819_1954310_-\|tail	Phage tail protein	D2JLF8	Staphylococcus_phage	1.9e-295	98.8
AYC78557.1\|1954309_1958959_-\|tail	Phage tail tape measure protein, TP901 family, core region	A0A1V0E5H1	Staphylococcus_phage	0.0e+00	97.7
AYC78558.1\|1959015_1959138_-	Phage protein	D2JLF6	Staphylococcus_phage	2.6e-14	97.5
AYC78559.1\|1959197_1959644_-	Phage protein	D2JLF5	Staphylococcus_phage	1.2e-72	99.3
AYC78560.1\|1959708_1960662_-\|tail	Phage major tail, phi13 family protein	A7TWD0	Staphylococcus_phage	5.6e-168	95.3
AYC78561.1\|1960662_1961043_-	Hypothetical protein	Q9MBP5	Staphylococcus_prophage	3.4e-68	100.0
AYC78562.1\|1961039_1961417_-\|tail	Head-tail adaptor protein	D2JLF2	Staphylococcus_phage	4.0e-61	99.2
AYC78563.1\|1961416_1961749_-	Hypothetical protein	D2JLF1	Staphylococcus_phage	4.1e-57	97.3
AYC78564.1\|1961738_1962071_-\|head,tail	Phage head-tail adapter protein	D2JLF0	Staphylococcus_phage	1.2e-56	98.2
AYC78565.1\|1962079_1962238_-	Hypothetical protein	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
AYC78566.1\|1963609_1964194_-\|head,protease	Prohead protease	D2JLE7	Staphylococcus_phage	2.9e-106	99.5
AYC78567.1\|1964186_1965437_-	Portal protein	D2JLE6	Staphylococcus_phage	3.7e-236	99.5
AYC78568.1\|1965442_1965643_-	hypothetical protein	A0A1P8L6D3	Staphylococcus_phage	4.9e-26	97.0
AYC78569.1\|1965656_1967342_-\|terminase	Phage terminase-large subunit	D2JLE4	Staphylococcus_phage	0.0e+00	99.1
AYC78570.1\|1967344_1967812_-\|terminase	Phage terminase-small subunit	D2JLE3	Staphylococcus_phage	6.9e-79	97.4
AYC78571.1\|1967940_1968294_-	hypothetical protein	D2JLE2	Staphylococcus_phage	3.3e-65	97.4
AYC78572.1\|1968300_1968753_-	putative phage-related protein	D2JLE1	Staphylococcus_phage	3.9e-79	98.7
AYC78573.1\|1968867_1969329_-	Hypothetical protein	D2JLE0	Staphylococcus_phage	1.1e-68	100.0
AYC78574.1\|1969351_1969552_-	Phage protein	D2JLD9	Staphylococcus_phage	2.4e-28	98.5
AYC78575.1\|1969551_1970202_-	Hypothetical protein	D2JLD8	Staphylococcus_phage	3.8e-115	98.1
AYC78576.1\|1970360_1970510_-	Transcriptional activator rinB	A0A1W6JPZ2	Staphylococcus_phage	1.4e-17	98.0
AYC78577.1\|1970506_1970713_-	Hypothetical protein	B7T0C2	Staphylococcus_virus	6.0e-19	95.6
AYC78578.1\|1970749_1971286_-	Dimeric dUTPase	A0A1P8L6E0	Staphylococcus_phage	3.0e-94	98.9
AYC78579.1\|1971278_1971542_-	Phage protein	C8CH04	Staphylococcus_phage	1.0e-31	100.0
AYC78580.1\|1971555_1971798_-	Hypothetical protein	Q4ZDP7	Staphylococcus_virus	1.2e-39	96.2
AYC78581.1\|1971801_1972158_-	Hypothetical protein	M1RZB8	Staphylococcus_phage	2.1e-59	98.3
AYC78582.1\|1972169_1972427_-	Transcriptional regulator	Q9MBR5	Staphylococcus_prophage	5.4e-41	100.0
AYC78583.1\|1972427_1972613_-	Hypothetical protein	B2ZYW2	Staphylococcus_phage	3.0e-25	96.7
AYC78584.1\|1972617_1973022_-	Phage protein	G4KNP2	Staphylococcus_phage	1.6e-68	100.0
AYC78585.1\|1973032_1973254_-	Hypothetical protein	A7TWN4	Staphylococcus_phage	5.5e-34	97.3
AYC78586.1\|1973266_1973428_-	Hypothetical protein	A0A0H4IU12	Staphylococcus_phage	1.0e-21	100.0
AYC78587.1\|1973421_1974195_-	DNA replication protein DnaC	C5I645	Staphylococcus_phage	3.0e-143	99.6
AYC78588.1\|1974204_1975008_-	Hypothetical protein	Q9MBR9	Staphylococcus_prophage	5.7e-121	99.6
AYC78589.1\|1974979_1975675_-	Virulence associated protein	A0A2H4JAQ0	uncultured_Caudovirales_phage	4.0e-131	97.8
AYC78590.1\|1975688_1976114_-	Phage protein	Q4ZCX0	Staphylococcus_virus	3.4e-64	98.6
AYC78591.1\|1976113_1976752_-	Single-stranded DNA-binding protein	Q9MBS2	Staphylococcus_prophage	1.7e-115	100.0
AYC78592.1\|1976751_1977231_-	Hypothetical protein	Q9MBS3	Staphylococcus_prophage	8.1e-83	100.0
AYC78593.1\|1977245_1977506_-	Phage protein	Q9MBS4	Staphylococcus_prophage	1.5e-43	100.0
AYC78594.1\|1977600_1977762_-	Hypothetical protein	A0A059T7J6	Staphylococcus_phage	4.3e-20	98.1
AYC78595.1\|1977754_1977976_-	Hypothetical protein	Q9MBS7	Staphylococcus_prophage	1.5e-31	100.0
AYC78596.1\|1978047_1978260_+	Hypothetical protein	A0A2H4JAT7	uncultured_Caudovirales_phage	5.4e-15	56.1
AYC78597.1\|1978367_1979120_-	Phage antirepressor protein	S4SW96	Staphylococcus_phage	2.1e-138	99.2
AYC78598.1\|1979180_1979423_+	Hypothetical protein	Q4ZCA7	Staphylococcus_virus	2.8e-15	50.0
AYC78599.1\|1979712_1979943_+	Hypothetical protein	A0A0H3U2T9	Staphylococcus_phage	9.4e-37	100.0
AYC78600.1\|1979939_1980116_-	Hypothetical protein	A0A2I6PEL1	Staphylococcus_phage	8.8e-27	100.0
AYC78601.1\|1980188_1980401_-	Phage protein	Q4ZAL9	Staphylococcus_virus	1.9e-31	98.6
AYC78602.1\|1980553_1980868_+	Phage protein	Q4ZAM0	Staphylococcus_virus	6.3e-52	99.0
AYC78603.1\|1980889_1981363_+	Phage protein	A0A2I6PE92	Staphylococcus_phage	1.8e-82	97.4
AYC78604.1\|1981363_1982071_+	Hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.1e-14	70.2
AYC78605.1\|1982236_1982404_+	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	3.6e-22	100.0
AYC78606.1\|1982439_1983261_+	hypothetical protein	A0A0N9RUA4	Staphylococcus_phage	6.0e-134	91.4
AYC78607.1\|1983439_1984486_+\|integrase	prophage integrase	Q4ZDS8	Staphylococcus_virus	6.1e-200	99.1
1986043:1986057	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032481

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection