CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP032707	Brevundimonas naejangsanensis strain BRV3 chromosome, complete genome	4 crisprs	DEDDh,csa3,DinG,WYL	1	0	1	0

1. CP032707

CRISPR-Cas detection and classification

Crispr_ID: CP032707_1

• CRISPR_ID: CP032707_1
• CRISPR_location: 907488-907569
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP032707_1

Consensus_repeat	Method
CCCTTCTCCCCTTGCGGGAGAAGG	CRISPRCasFinder

spacers of CP032707_1

>1.1|907512|34|CP032707|CRISPRCasFinder
CGCTCAAGCAGCCGAAGGCGTTAGCGCGCCCAAA

CRISPR arrays and Neighbor proteins around CP032707_1

CRISPR arrays

The CRISPR arrays of CP032707_1

>merge|CP032707|1|907488-907569|CRISPRCasFinder
CCCTTCTCCCCTTGCGGGAGAAGGCGCTCAAGCAGCCGAAGGCGTTAGCGCGCCCAAACCCTTCTCCCCTTGTGGGAGAAGG

>CP032707|1|1|907488-907569|CRISPRCasFinder
CCCTTCTCCCCTTGCGGGAGAAGG	CGCTCAAGCAGCCGAAGGCGTTAGCGCGCCCAAA
CCCTTCTCCCCTTGTGGGAGAAGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP032707.1|AYG94490.1|907753_909625_+|DNA-helicase-RecQ	unknown	unknown	gnl|CDD|273594
CP032707.1|AYG94497.1|918979_920812_-|hypothetical-protein	unknown	unknown	gnl|CDD|366360
CP032707.1|AYG94491.1|909579_910878_-|hypothetical-protein	unknown	unknown	unknown
CP032707.1|AYG94494.1|912716_914060_+|diguanylate-cyclase	unknown	unknown	gnl|CDD|143635
CP032707.1|AYG94482.1|899576_899909_+|thioredoxin	unknown	unknown	gnl|CDD|200072
CP032707.1|AYG94487.1|903716_904943_-|tryptophan-synthase-subunit-beta	unknown	unknown	gnl|CDD|235288
CP032707.1|AYG94483.1|900191_901478_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl|CDD|223362
CP032707.1|AYG94481.1|895964_899405_+|double-strand-break-repair-helicase-AddA	unknown	unknown	gnl|CDD|274298
CP032707.1|AYG94493.1|912091_912532_+|hypothetical-protein	unknown	unknown	unknown
CP032707.1|AYG94498.1|921117_921456_+|XRE-family-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
CP032707.1|AYG94495.1|914271_914919_+|hypothetical-protein	unknown	unknown	unknown
CP032707.1|AYG94489.1|906573_907473_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|225370
CP032707.1|AYG94484.1|901488_902388_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl|CDD|235547
CP032707.1|AYG94488.1|904975_905614_-|phosphoribosylanthranilate-isomerase	unknown	unknown	gnl|CDD|234923
CP032707.1|AYG94496.1|918467_918983_-|hypothetical-protein	unknown	unknown	gnl|CDD|131309
CP032707.1|AYG96276.1|916125_918111_-|DUF2813-domain-containing-protein	unknown	unknown	gnl|CDD|226121
CP032707.1|AYG94492.1|911006_911978_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
CP032707.1|AYG94486.1|903237_903717_-|hypothetical-protein	unknown	unknown	gnl|CDD|236708
CP032707.1|AYG96275.1|905836_906526_-|pseudouridine-synthase	unknown	unknown	gnl|CDD|211327
CP032707.1|AYG94485.1|902398_903241_-|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl|CDD|237285

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP032707.1|AYG94490.1|907753_909625_+|DNA-helicase-RecQ	gnl|CDD|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
CP032707.1|AYG94497.1|918979_920812_-|hypothetical-protein	gnl|CDD|366360	pfam00899, ThiF, ThiF family. This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1.	4.70444e-32
CP032707.1|AYG94494.1|912716_914060_+|diguanylate-cyclase	gnl|CDD|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	6.67936e-59
CP032707.1|AYG94482.1|899576_899909_+|thioredoxin	gnl|CDD|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	1.29058e-42
CP032707.1|AYG94487.1|903716_904943_-|tryptophan-synthase-subunit-beta	gnl|CDD|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
CP032707.1|AYG94483.1|900191_901478_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl|CDD|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	9.96519e-149
CP032707.1|AYG94481.1|895964_899405_+|double-strand-break-repair-helicase-AddA	gnl|CDD|274298	TIGR02784, ATP-dependent_nuclease_subunit_A, double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
CP032707.1|AYG94498.1|921117_921456_+|XRE-family-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.20432e-09
CP032707.1|AYG96276.1|916125_918111_-|DUF2813-domain-containing-protein	gnl|CDD|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	2.29382e-51
CP032707.1|AYG94489.1|906573_907473_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	7.5989e-70
CP032707.1|AYG94484.1|901488_902388_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl|CDD|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	1.17889e-148
CP032707.1|AYG94488.1|904975_905614_-|phosphoribosylanthranilate-isomerase	gnl|CDD|234923	PRK01222, PRK01222, phosphoribosylanthranilate isomerase.	4.87516e-85
CP032707.1|AYG94496.1|918467_918983_-|hypothetical-protein	gnl|CDD|131309	TIGR02256, Uncharacterized_protein_y4qB, integrative and conjugative element protein, VC0181 family. This uncharacterized protein is found in several Proteobacteria, among them Rhizobium sp. NGR234, Vibrio cholerae, Myxococcus xanthus, and E. coli strain ECOR31. In the latter, it is part of an integrative and conjugative element that is readily induced to excise and circularize.	7.553e-18
CP032707.1|AYG94492.1|911006_911978_-|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	8.2668e-22
CP032707.1|AYG94486.1|903237_903717_-|hypothetical-protein	gnl|CDD|236708	PRK10523, PRK10523, envelope stress response activation lipoprotein NlpE.	0.00253879
CP032707.1|AYG96275.1|905836_906526_-|pseudouridine-synthase	gnl|CDD|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	9.13665e-81
CP032707.1|AYG94485.1|902398_903241_-|tryptophan-synthase-subunit-alpha	gnl|CDD|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	9.20968e-122

Protein sequences

>CP032707.1|AYG94489.1|906573_907473_-|class-I-SAM-dependent-methyltransferase
MTTLLYGRPPAVFDPPATATQTSPLIPGSTALETVAPGSVDGVMLYAPPGAVERRYTLALALQALKPGGRLDVMAPKDKGGSRLGKELKAFGLEVIETAKAHHRRCIVIRPEAVEGLDAAVEAGAPRVVPGLEAWSQPGVFAWDRIDPGTALLAQVLPPLKGAGADLGCGFGALSTVVLRSPAVTALRLIDIDRRAVEAAKRNVEDARASFDWADVRTLDGAGDLDFIVSNPPFHDGGAEDRRLGQNFIRKAAEMLRKGGTAWIVANRHLPYEAELDAAFKRVRMVVDQGGYKIFEAVK
>CP032707.1|AYG96275.1|905836_906526_-|pseudouridine-synthase
MGYGSRAEMARLGKAGGIVLDGADLTDVSKRIPVTPDLPSRMEIDGEPLDPVPGLVILLNKPLGMTCSHKEDGALVYDVLPDRWRRRDPAISTIGRLDKQTSGLLLLTDDGDLLHRVISPKRQVAKVYRATLARPLNGTEGALFASGELVLEGEDKPLAPAVLEVVSPTEALLTVTEGRYHQVRRMFAAVGNHVEALHRERLGGLALPDDLAPGAWRLLSEDEIASIFA
>CP032707.1|AYG94488.1|904975_905614_-|phosphoribosylanthranilate-isomerase
MTLTKICGLTTPDTLDAALDGGAAFVGAVVFPKSPRHIPPLHAATLFDRARGRAKIVAVLVDPDDVLLTEVALILRPDLIQLHGHETPQRAAQARRLTGAGIIKALPIRDEADFASVADWTGVADHLLFDAKPPKGSDLPGGVGASFDWRLMQNRALPANWFLAGGLSPENLTEAVRISGAPMVDVSSGVESAPGVKDPDLIHAFLEAVSRS
>CP032707.1|AYG94487.1|903716_904943_-|tryptophan-synthase-subunit-beta
MPDNVNASLSNSYAWPDAEGRFGPYGGRFVPETLMPLIHELEAAYKAAKADPSFQAELDGYLEHYVGRASPLYFAERLTEHFGGAKIWLKREDLNHTGAHKINNCMGQILLARRMGKTRIIAETGAGQHGVASATVCARFGLPCTVYMGAVDVARQQPNVFRMKLLGAEVSAVTAGAATLKDAMNEAMRDWVTNVADTYYIIGTAAGPAPYPAMVRDFQSVIGREIKAQSQARIGRLPDAVMACIGGGSNAIGAMHPFVADEGVRLIGVEAAGHGLDTPDHAASLKGGRSGVLHGNRTYLLQDADGQILEGHSISAGLDYPGIGPEHAWLHDLGRAEYLSATDDEALEAFQALCKLEGIIPALESSHALARAGEVARQIGKDGDLVVVLSGRGDKDINTVAQHLGVEL
>CP032707.1|AYG94486.1|903237_903717_-|hypothetical-protein
MMKTLLIAAIAAAVSPTLTLAQNTAAPAQQAPVQTAPTVPPGPAATGMPVLPPATEAADCGGLLRSPAFCVTAQLDQIGALADAYSEHLASLNWLAADGDDNRVIFVRRREGGGCDGLQMVAFYDETKPAEATAPGYLGFAAIPGDVCTAAPAAGTQPQ
>CP032707.1|AYG94485.1|902398_903241_-|tryptophan-synthase-subunit-alpha
MTTARIDARFAKLKAEGRAGFVPYVMTGDPSRAEALEILKGLPAAGADLIELGLAFSDPMAEGPPIQRAALRGLKAGMTLRGTLDLVADFRKGDQDTPLILMGYLNPVESYGYEVFARDAAEAGVDGIIVVDCPPEEAAPLAAALDAAEVSLIRLATPTSDDDRLKVIAEGTSGFVYYVSVAGVTGVKEAVAAEVAPAVERVRRAANLPVAVGFGVRTPERAAEIARVADAVVAGSVFVDEVAAALEANEPAAPRVLAKVKALADAVHGARTSASVTETV
>CP032707.1|AYG94484.1|901488_902388_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MVDKNPENKARGGWLSRFAPGVRKIVSPRDTPDNLWVKDPDTGEMLFRSDLEAALWVTPSGRHMRINAPTRLKATFDDGLYEAIDTPDVPEDPLKFSDGKPYRDRLSAARKAAGRKDTMAIGYGRIGGAPAVVIVQDFTFMGGSLGMAAGEAFIAAAREAVKRNVPFVCYTAAGGARMQEGALSLMQMARTTLAVQEVKAAKLPYVVVLTDPTTGGVTASYAMLGDVHLAEPGALIGFAGPRVIETTIREKLPPGFQRAEYLKDKGMVDKVVSRGDLPRTLGLILSMLMSGAAQKQKAA
>CP032707.1|AYG94483.1|900191_901478_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MDPISERLRARHPQRIDLSLDRMRALCAALGNPQDRLPPVVHVAGTNGKGSTVALIRAIAEAAGLRVHAYTSPHLVRFNERIRLAGKLIEDEALNAILDRVEAAMAETGGQATVFESTTAAGFLAMSETPADLAVVEVGLGGSLDATNVIARPLLSVITPVDLDHAEFLGTKIEAVAAEKAGILKAGARGVVARQSEAAMAVIARRAAEVGSPLTVMGVDFDAWAERDGLAYQDQERFLDLPAPALSGAHQFDNAGVAVAAALELDLPASAIAEGLKAVRWPARMQRLTNGPYADKAQKADAELWLDGGHNPHAARALARALADRQTRAPRPVALIVGMLANKDAGGFFEALKGIDAQVFTVGFDGAAAEPEALAAVAQGRGFGALAAGSVDAALDRALALGAGRVVICGSLYLAGEVLGASRETWPQ
>CP032707.1|AYG94482.1|899576_899909_+|thioredoxin
MATVKVTDDSFDADVLKASTPVLVDFWAEWCGPCKQIGPALEQISDELAGKVTIAKVNIDDSPMVPSKMGVKGIPTLMLFKDGQMTSMKVGAMPKGKIVEWLAEAGVKAD
>CP032707.1|AYG94481.1|895964_899405_+|double-strand-break-repair-helicase-AddA
MNLHVRPEDALNPQTRAADPARSVFVTANAGSGKTTTLVSRVARLLLGGAAPSAILCVTYTKAAAAEMQARLFETLGKWAVMDDGELSAELARLDDSDAAALNPARLSEARRLFARALETPGGLKIQTIHAFCEKLLRRFPIEAGVSPRFTVLENEAAIALSHAAREDLARAALNDAEGPVGQAYSHFAVELDWGRFQDLLALIESRRAELTDYVARVADGRAPGPHVLTGADPQKTPEDIEADFLRWLNPADWAACADGLATSGKNDQKMAQRMRDAMPPDTTLAAMKDIFFDSKGVAREKFGAKAAPASSTTYLANVQLKYLAALDRQRAAKVADDTIKLLTLANAHAALYEAAKTAHGALDFSDLVARTVELLTVRSTAAWVLYKLDGGVDHVLIDEAQDTAPEQWAIMRALTGEFFTVEGTDRTVFAVGDEKQSIYSFQGARPERLRQESQVYSSLITGAGGAFEGVELAKSYRSTEAVLNFVDAVFDTPERTCALVGEDVAGFPPHIASRTGQPGAVELWPLFVDEAPPERDAWTDPVDQEGTASARKRMAQTLANEIIRQVVTGAVVFDKGGAARPCSYGDFLILVRRRDATFEEIIRALKAAGAPVAGADRLKLSQHIVFDDLKALARFALFPGDDLTLAEVLRGPFCDVDEDSLFDLAGLKDRKGLWRELKRRADERPEWGRALDLLRAARGARDLDPFGFFSRLLNRVDATGQSGRARILTRLGREAEEAIDETLNQVLAAEGRGGTDLETCLALLEAADVEVKRELEGPRGEVRVMTVHGAKGLEAPVVILPDTTMKAKAQGPSLMPVPLEDGAEAWLMCPGSSKEDCPASADARAAREARVGDESLRLLYVALTRARDRVIVMGRGSKRAPEAGDWWSVIEETFDRLGDQVRELDGGVRRYGADPGSLPAAVAAAEMRAEAPAWTRTNPPRDAAARFASPSQMQEQKRIPAPSPLARGEGPGAGLGRFRRGDLIHRLLERLPDLPSLDRPDAAHRMLARERDLSEDQRVEMIAAAFGVLDDARFAPVFGPGSRAEVALTGTAPDLPSGVSISGRIDRLVVTPQRVLVVDFKSNRPAPDRVEDADPAYVLQMAIYAAVLRRLYPDRAVEAALVWTDGPKLMAVPQGLMDAALENAR
>CP032707.1|AYG94490.1|907753_909625_+|DNA-helicase-RecQ
MFDVPPPADFSPTLDEARTLLERVWGHADFRGLQASVIQEVLAGRDVLAVLPTGGGKSVCYQVPAILRPGVGLVVSPLIALMTDQVEALKQQGVAAARLDSGLTMDERSAVWRAARSGELDLLYVSPEGLASGAMLERLAELPISLIAIDEAHCVSQWGHDFRPDYRTLGRLAEIFPRVPRIAVTATADARTRDDILASLKLGEARVFVDSFARPNLQLTAERKVNGSRARTDARVVELVRERRGRSGVVYCGSRDGCERVADALRDAGTNAIAYHAGFDARERDRRLERFLAEDGAVMVATIAFGMGVDKPDVRFVIHADPPGSLEAYWQEIGRAGRDGEPAEGVTLYGPSDIAWSLRRLDGRPMAEEVKQVQTRKVRQLFAMLDGATCRPQAVRRYFGEQDAQPCGVCDVCGDPPATFDALVPAQKALAAVQRLGERFGRTRVIDHLMGRTKDVQPWEAGLSTWGVGADLSLIGWRDVIDHLMFEGLLVEDPNEGKPLIRLGDPQAVRAVYRGEREVRVKEPPTRAVALDKPRRNAGRNLAVEGLDADVRARFEALRAWRRDRAVEQRVPPYVIFQDKTLVEIALQEPRGLDQLAVIPGVGAGKLERYGAGVLAALEAASG
>CP032707.1|AYG94491.1|909579_910878_-|hypothetical-protein
MAACTTAVDPIARNAPLKLAFAEPVESLRQRSDSGDREAQYALSFLMQGGLRGVERDALGAEALRARAGETRTQMTPIYVPGAKGSPGTTTMVPISSYGVSDAEARRMDACGAMLLLGEPALGGAVCGSPAAYIDLLPAGAAVREEMMRGFLAAGVRVDPATVSDCGATEALWADAAFRMGAGDRDGAAAASERVIALCGDGQRSWHARVMRAQLHLDAAEPDQALAVMAPVERPAPAPIGAFASEVVIAAHAMREDWYAYRRERDLLVGASLDALRAEPETRLIETFPVQGGTATLFERQGQLLPGLEAEMVALVAPDDDRAALRGIWLTRRDGFVNGKTAWFLDEYRCDGRSTLTYFTDRPSEAMVRDHVARRLSGALEALSTVVQGPGPATACRWPVQVAPGLGDDPAVLARQTAQPDAASSAASTPAP
>CP032707.1|AYG94492.1|911006_911978_-|alpha/beta-hydrolase
MPSSSRLAALPVVFAVVAAGVLAGVLVGVLAGGTEALAAGQAPAAAAYAPAPFQSSRILVEARGRARGEGPDVVLIPGLASTSAVWARAAAGLEDRYRVHLVTVRGFGDTAAGANAEGLVGAPTAAEIRRYIEEQGLQRPALIGHSMGGQVALRVAADAGDRVGRVMVVDASPFFPSLISPGSTAADVEPLARLAYQALMLLGDQALRTQATSMGLELGGAADSLFDGLGWQGGDRRVLAQGLYEVMTTDLRARLPLIAAPVTVVYGWSPDDRNPRSQVDELFRAGYRSLPRPATFERIEGAEHMVMIDQPRSFQQAVERFLR
>CP032707.1|AYG94493.1|912091_912532_+|hypothetical-protein
MKQTVITIAAVLSLAASPVLAENWHVVSRSSATVFMLDVDSITEAGDARTAVLARVPSAGPSADLSYSAGEITIRCAANQSKPGVEILYGPDGAEQERIDDGYDFDAIAKNSLDAYVKSMLCDGDRGTTTHPSIRAFIEAGRPQPR
>CP032707.1|AYG94494.1|912716_914060_+|diguanylate-cyclase
MPHLTSAVATPSRAPEIQLDPQGMERLRGLVRDHADALVKAFYDVLLEDREAQGFLHHSIVQERLSPSLRTWLIDLFAPGLDVEGKSFIARQTKIGEVHARIKIPMHLVMAGAAVLKGRIADLLADDEARFDQLRLVGERIDAALLLMSQSYVKGTMNRARMDEAYRLFSLDQDIHFERESQRASLMEWSQKTLFRILGAGPNEATSALGRSPFGLWIRHRADFLFEASPHLERLNQAIDRIDEDLLPRIDAGDRAESLTALQAGVEEIAFLLNEMFQGLAGLEGGRDPLTRTLNRRFLSSILSREIGFANANQTPLSVLLLDVDHFKRINDEHGHPAGDEVLRQVAEAVTENVRPSDFVFRYGGEEFLIVLVETTLQQAVAVAERTRQALEARDIKIGGAERLRVTASIGAAEHGGHPDENYLIKTADEALYRAKQAGRNRVEQNG
>CP032707.1|AYG94495.1|914271_914919_+|hypothetical-protein
MLGVVVLLSACQQWLSLFNAQADMKLGPSEILACLATALPYIFISQVLRACHEEGVSLEAYYPRHRPALAGALLIPVITSFGVNIFYAVTLHEAVVPTVVGLLAYHGVRFSCILPMLIWPAVAVQRTALAVLIAHTVLLMWSESADLRLRTLFRLSFSWPGVTQLRLRRHLGCDWLHLTSHLMRLGSAVGPCSEWQAGRFRLGLLLIPAKAQDVG
>CP032707.1|AYG96276.1|916125_918111_-|DUF2813-domain-containing-protein
MHISRVVIRNFANFQTLDIRTGEDMVIVGENKVGKSNFLRAIQLVLDPSLSERDRRLGLEHFWDGLGDDKLGSVVEVSLEFTERAENARLLRHLADCVVDVGPPFVGRVTYRYRPKPDLGGPPTSMADYEYVIFGGVDPENDIGSDMRRMTPLDVQGALRDAEKELASWRHSPLRPLIEELAETLSDDDRDEIQTEIDDAQSELTSRPEIQAVANRIATRLEAMVGTQHTVPLSLGLTPTRLDALLRGLRLLIDGGTRGISDASVGSANLIFLALKSLELDRLVADGERDHTFFAVEEPEAHLHPHLQRLIYRHFLGTQPRGADGPRAQSTVLTTHSPHIASVAPLRSIVLLRHDEEVGATTGVAAATTPLTIEDVADLQRYIDVTRGEIFFSRGVILVEGDAERFLVPAFADVLGMSLDELGVTVCSVGGVNFAPYVKLLGANGLQIPFVVLTDKDPIDANRSLGVPRLKRLLRVITPGVELGEQPIRIVYTDGDGKLRSHTPDLFVERETHAEFIEVKWERDARAPKNEARWPFIASAISGLGYTYAVVTERHLMHQPLKANVDRLLRHQHSPQLSRAASAMLWDALAAEPQTLANILASQADPSEPSVLRALADGWLCTDLSQPISPRSLVRLPLDRQRRTRRLGRASQFHWLACQVP
>CP032707.1|AYG94496.1|918467_918983_-|hypothetical-protein
MKLWISRPALEEIIRLAEQYAPLETGGVLLGWRKGPDRVVAAVVGPGPLALHGRHMFLPDHAWQLTQIDQAFASTGGGLDYLGDWHTHPDGAAELSALDRTTLQKLGRRIMDAVMAIAAPTGEQSWTLAAWRQPRGKWWDRPAAEDCDLVIFDPAPGSPDWMPMIGVSNIE
>CP032707.1|AYG94497.1|918979_920812_-|hypothetical-protein
MFRPVRPATPPGVPTVRRFPVIRPRIGRWAEMDGSAQRGSELDWWHRFPALLQAELDAFKIYGAEAVVVSSTNGSLIVEVQWPTQAGPLGLRVGYCPTHPYGRPSVGTSDLTLSRHQDPFSGTLCLLTQEAGQWRPGEKAADLIAAQLPKAIEAARAHDEGRLNEAADLEEHAADPLTSYFDHLCDANSIALYDANLRAPSGRWGPATFTVRNRLAGGVEIVLRTLKPTQGLWLAAPFKPWEERTPIQTVAGRWVRMKPEATSDLARLAAQAEAIIAQDGVGRKSASRDSRSAQTGPELTVILFDDEVEYGREGLGCLFLYRSPQNQLALVSGRRIAPDLLARAPVSAGLQDKRVLLVGAGAVGSFVGLELVRAGLGRLDVVDGDTVEPGNSVRWALGREYWGRPKAHALADFAARHYPLSHVVAHFAKVGVAVNTVEHAIGLGIHPLEWLRERVREADLVVDATASDECQLFLEDFCRKQGKPYILGHATEGAAGGAVAQFTPDRPGCRVCLAEHWWDKTLPEPFVDPSGVLVPVGCNQPTFTGGAFDLQEVSMEMVRTALGVLVPSLYPRSRLGLAVVNLVEAGGGRVTPCWTTHDLTPHPRCWCNRQ
>CP032707.1|AYG94498.1|921117_921456_+|XRE-family-transcriptional-regulator
MIPDPRYQQFGEAMKVRRQQLGTTQAELAARVGLSRASIANIERGRQSVLLHHACDIAAALKLDHVTDLMPSRSSLSLENEALALSDDVSAAAKAQISGIIAAAMAAARPRS

Crispr_ID: CP032707_2

• CRISPR_ID: CP032707_2
• CRISPR_location: 1060754-1060854
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP032707_2

Consensus_repeat	Method
CGCCCTTCGGGCTGCTTGAGGCCTG	CRISPRCasFinder

spacers of CP032707_2

>2.1|1060779|51|CP032707|CRISPRCasFinder
ATGCCTGGCCTATCGCCCTTCGGGCTGCTTGAGGCTTGATCCCTGGCCTGC

CRISPR arrays and Neighbor proteins around CP032707_2

CRISPR arrays

The CRISPR arrays of CP032707_2

>merge|CP032707|2|1060754-1060854|CRISPRCasFinder
CGCCCTTCGGGCTGCTTGAGGCCTGATGCCTGGCCTATCGCCCTTCGGGCTGCTTGAGGCTTGATCCCTGGCCTGCCGCCCTTCGGGCTGCTTGAGGCCTG

>CP032707|2|2|1060754-1060854|CRISPRCasFinder
CGCCCTTCGGGCTGCTTGAGGCCTG	ATGCCTGGCCTATCGCCCTTCGGGCTGCTTGAGGCTTGATCCCTGGCCTGC
CGCCCTTCGGGCTGCTTGAGGCCTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP032707.1|AYG94603.1|1053544_1055881_-|PAS-domain-containing-protein	unknown	unknown	gnl|CDD|223715
CP032707.1|AYG94615.1|1076726_1077155_-|YraN-family-protein	unknown	unknown	gnl|CDD|237119
CP032707.1|AYG94610.1|1066474_1067404_+|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
CP032707.1|AYG94611.1|1071552_1073130_-|response-regulator	unknown	unknown	gnl|CDD|236848
CP032707.1|AYG94616.1|1077151_1078024_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl|CDD|381175
CP032707.1|AYG94604.1|1056041_1056452_+|metallopeptidase-family-protein	unknown	unknown	gnl|CDD|240572
CP032707.1|AYG94613.1|1074851_1075799_-|glutathione-synthase	unknown	unknown	gnl|CDD|235371
CP032707.1|AYG94602.1|1052585_1053440_-|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl|CDD|378932
CP032707.1|AYG94609.1|1063337_1065506_-|S9-family-peptidase	unknown	unknown	gnl|CDD|224422
CP032707.1|AYG94601.1|1051778_1052570_+|kinase	unknown	unknown	gnl|CDD|226691
CP032707.1|AYG94598.1|1048748_1050533_+|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl|CDD|236375
CP032707.1|AYG94607.1|1059896_1060682_-|DUF1223-domain-containing-protein	unknown	unknown	gnl|CDD|369071
CP032707.1|AYG94614.1|1075917_1076730_-|hypothetical-protein	unknown	unknown	gnl|CDD|225464
CP032707.1|AYG94605.1|1056454_1057849_-|methyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|223222
CP032707.1|AYG94600.1|1051456_1051777_+|2Fe-2S-ferredoxin	unknown	unknown	gnl|CDD|178203
CP032707.1|AYG94599.1|1050545_1051343_+|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl|CDD|235652
CP032707.1|AYG96288.1|1065635_1066439_-|two-pore-domain-potassium-channel-family-protein	unknown	unknown	gnl|CDD|369572
CP032707.1|AYG94606.1|1057845_1059825_-|potassium-transporter-Kup	unknown	unknown	gnl|CDD|225700
CP032707.1|AYG94612.1|1073153_1074764_-|ATP-binding-protein	unknown	unknown	gnl|CDD|223679
CP032707.1|AYG94608.1|1061003_1063205_-|S9-family-peptidase	unknown	unknown	gnl|CDD|224422

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP032707.1|AYG94603.1|1053544_1055881_-|PAS-domain-containing-protein	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.18016e-46
CP032707.1|AYG94615.1|1076726_1077155_-|YraN-family-protein	gnl|CDD|237119	PRK12497, PRK12497, YraN family protein.	4.29145e-27
CP032707.1|AYG94610.1|1066474_1067404_+|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	2.28018e-112
CP032707.1|AYG94611.1|1071552_1073130_-|response-regulator	gnl|CDD|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	4.85106e-86
CP032707.1|AYG94616.1|1077151_1078024_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl|CDD|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	4.46223e-111
CP032707.1|AYG94604.1|1056041_1056452_+|metallopeptidase-family-protein	gnl|CDD|240572	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein. The subfamily includes an uncharacterized protein from Acidothermus cellulolyticus (ACEL2062) and its homologs from bacteria. Although its biological role remains unclear, ACEL2062 contains a minimal metalloprotease (MMP)-like domain consisting of 3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x could be any amino acid) motif. It may belong to a superfamily of bacterial zinc metallo-peptidases, which is characterized by a conserved HExxHxxGxxD motif.	1.8524e-44
CP032707.1|AYG94613.1|1074851_1075799_-|glutathione-synthase	gnl|CDD|235371	PRK05246, PRK05246, glutathione synthetase; Provisional.	2.9798e-180
CP032707.1|AYG94602.1|1052585_1053440_-|haloacid-dehalogenase-like-hydrolase	gnl|CDD|378932	pfam12710, HAD, haloacid dehalogenase-like hydrolase.	1.69471e-06
CP032707.1|AYG94609.1|1063337_1065506_-|S9-family-peptidase	gnl|CDD|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0
CP032707.1|AYG94601.1|1051778_1052570_+|kinase	gnl|CDD|226691	COG4240, COG4240, Predicted kinase [General function prediction only].	1.16455e-39
CP032707.1|AYG94598.1|1048748_1050533_+|succinate-dehydrogenase-flavoprotein-subunit	gnl|CDD|236375	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
CP032707.1|AYG94607.1|1059896_1060682_-|DUF1223-domain-containing-protein	gnl|CDD|369071	pfam06764, DUF1223, Protein of unknown function (DUF1223). This family consists of several hypothetical proteins of around 250 residues in length which are found in both plants and bacteria. The function of this family is unknown. Structurally it lies in the Thioredoxin-like superfamily.	1.0634e-68
CP032707.1|AYG94614.1|1075917_1076730_-|hypothetical-protein	gnl|CDD|225464	COG2912, COG2912, Uncharacterized conserved protein [Function unknown].	2.32443e-37
CP032707.1|AYG94605.1|1056454_1057849_-|methyltransferase-domain-containing-protein	gnl|CDD|223222	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].	3.54917e-87
CP032707.1|AYG94600.1|1051456_1051777_+|2Fe-2S-ferredoxin	gnl|CDD|178203	PLN02593, PLN02593, adrenodoxin-like ferredoxin protein.	3.58285e-25
CP032707.1|AYG94599.1|1050545_1051343_+|succinate-dehydrogenase-iron-sulfur-subunit	gnl|CDD|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	4.77431e-165
CP032707.1|AYG96288.1|1065635_1066439_-|two-pore-domain-potassium-channel-family-protein	gnl|CDD|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	2.50992e-11
CP032707.1|AYG94606.1|1057845_1059825_-|potassium-transporter-Kup	gnl|CDD|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
CP032707.1|AYG94612.1|1073153_1074764_-|ATP-binding-protein	gnl|CDD|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
CP032707.1|AYG94608.1|1061003_1063205_-|S9-family-peptidase	gnl|CDD|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0

Protein sequences

>CP032707.1|AYG94607.1|1059896_1060682_-|DUF1223-domain-containing-protein
MTTRGLIRYGMTAAVAGASLLALAAAPAGTRSQRDRDDAPVPAATTQPVVVELFTAQGCAGCPEANRAVGGVAQQPGVIVLTYGVDYWDYLGWPDTFARPEFAARQRAYRQALQLRNVSTPQVVIGGRRQLSGAHTPELRAAVEAEARGRGWPPEIEFRETGDRVGVGSGRPPRGGAEVVAVLYRPGLQTVEVKGGDNRGQAVPHVNVVREVRRLGDWTGRPVLFALPADAADGDGMVVLLQAKDDRHILSSAARPEPARD
>CP032707.1|AYG94606.1|1057845_1059825_-|potassium-transporter-Kup
MVGDTPRGDAPASPATASESANAQIPPPGGHGAGQGQKSGKATHRALILGAIGVVFGDIGTSPIYALREAIGHAQKGVGGDLAVIGVVSLAFWALMIVVTFKYVMFLMRADNKGEGGTLSLMALAQHAIGRRSAWLFILGVCGAALFYSDGVITPAISVLSAIEGLQEAPGLNGRLDPFILPMAAGILIALFMVQSRGTAGLARFFGPITLGWFLSLGLLGVLHIFDDLSIIRALSPHYGVQLLLKDGFLGFVILGSVFLAVTGAEALYADMGHFGKAPIRQGWLFIVLPCLTLNYLGQGAFLLANPGGADNPFWNMVPQLVYWPMLILATAATVIASQAVITGAFSVTQQAVQLGLLPRLDIRNTSETQAGQIYVPAINSLLMVGVLFVLVTFQSSHNLTAAYGVAVTGTMMVNTLMSFTVVRHKWKWPVWAMLLTLVPFGFIDAVFLTSNLLKIPNGAWMPLVLGGGLVMLMWTWVRGAQILADKTRKDSLPLTDLIEMLRARPPHRAPGTAIFLTSDPDVAPVALMHNLKHNKVLHEKNIILTVHTSDRPRVSDQQRVSVEPISDDFKRLTLTFGFMETPNVPRALGLCRKQGLKFDIMSTSFFLGRRSVVPSARQGMPLWQDKLFIFLMRNAANPTDFFRIPPGRVVELGTQVSV
>CP032707.1|AYG94605.1|1056454_1057849_-|methyltransferase-domain-containing-protein
MSGGAPKGRSSAARGRRIAEKARGPRRAPAPRPVADDPHADVGVEARLVAGLLLNAALEKRTGLDEALSQAPARDLAPPDRAFARAVAMAALRRLGEIDQILERRLQKAPPLAVMTILRIALAQTLVLETPAFAAVSTAVKLAERDPKTRPYKNLVNAVLRGVGRDGPGLTTAESNLPDWLAQRWKATYGEAALIGLALATREEPATDLTARPGVDPAELAALVEGEVLPGGTVRTGKRGDVASWPGFEAGDWWVQDAAAAVPARLLAVKAGETALDLCAAPGGKTLQLAAAGAEVVALDRSEARLKRLRQNFERMKLTAEVVAVPAEDWEDDRAFDAVLLDAPCTATGTYRRNPEVLRATRPADVAKLADVQHRLLDVAAEKVKPGGRLVYCVCSLEREEGETQIIAFLRRNPAFRTVPAVPAEVGAPDEALTAEGWLRILPSQWAERGGLDGFFAAKLERIA
>CP032707.1|AYG94604.1|1056041_1056452_+|metallopeptidase-family-protein
MTTSWIDQFAPSLDDFARLAEAAFAGLPEMFRQAASEVVIRVDDFADEETLADLEIEDPFELTGLYSGVHIGERDAMGPAPEPSRIFLYRRPILDEWCERGDVGLDEIIAHVLIHEIGHHLGLDDDQIHAIEDDAD
>CP032707.1|AYG94603.1|1053544_1055881_-|PAS-domain-containing-protein
MAEADIAADIAFVATAGAAGLALAVSAWTWRLRARLGARETEIEDGLAGIQAQAAAGAAALAVFDDVRLALTPGGRVQAVFGAPEVLAALAPDHDAAQAGEAILASLSQSHTGRMEALVGAGEAFETLLETPDGAWAVEGRAHGGGAWLRLSRLGRPDAGGEAGPGALAEQSPAPTWVVDGAGHLIWANSAWLVEAGAETLDEARGRGLSFDRGADAVVAEALRLNARQEGFRWTTAGGRRRAWKILAEPLVGGRGAVIAFAIEMTEAEETRDTLRRHVEAHDETLNHLADAVAIFGPSKRLAFHNTAFQSLFGVDPAWLDERPTHAELLDRLRQKRLLPEVVDYAAWKAEELDFYGAAQASPDDSWSLPDGRTLRVVRQPHPLGGILLIFSDITGELQLRSRYNAQIQVQRATLDKLNDAVAVFGSDGRLRLHNEAFETFWGVGGERLMEAGDFDAVAALCRPVLPDAALWLGLKARVADPDPESRVAISGEGRTEDGRVAAWQTRPLPDGATLVAFFDVTARRELEQALAAKEAALAESQALKREFVGSVSYELRTPLTTIVGYSELLEAMGDLPERSRQHAGAIRVAASHLARSIDDVLDMAQIDAGEMELTLGDVRVCDLLDEAAEKIRAKVEGRGATLTLVCPAGLKPIRADARRIAQAVDHLLENACRAVTEGGAVSLTAEAGPGEVRIRVEDTGRGIPYHLQAHVFDRFVRRERGGPGVALALVKALVELHGGWAEVQSEPGKGAAFILHLPVEAAAPTAAPELLLSGEHE
>CP032707.1|AYG94602.1|1052585_1053440_-|haloacid-dehalogenase-like-hydrolase
MADMTRPLLKTAVIYDFDGTLARGNMQEVSFIPSIGMTPAQFWNETVRPRTIAADGDGILMYMQMMLLAAREQGTPVTRQTLRDHGRDVALFEGLRDGSWFDRMNAFGAQYGLEIEHYIISAGLTEMIEGCPIAEAFTHVFASKYDYDENDVAVWPAVGVNYTTKTQYLFRINKGVHNHWEDERINRFIPDEERPIPFDRMIFLGDGDTDVPTMKMMHTKGGFSIAVYDPDSTPRDHDKIHRLISEDRVNFVAAGDYREGSPVDLIVKGLIGRIAVNYGRMPAD
>CP032707.1|AYG94601.1|1051778_1052570_+|kinase
MIDARLLDAVGSLVAAHARPDHIPLIGVAGAQGSGKTTLARAAAERLGAACLSLDDVYLTRARREAKSRAVHPLFAVRGPPGTHDLALLEGTITALRATDPDSLTPLPAFDKLADDRRPWVDWPVFAGRPSAVLVDGWCLGATPQPEADLVAPINALEAQRDGQGIWRRAVNANLAGPYAQAFARFDAVLFLKAPSFDAVLDWRCQQEAGLMGLSPADLPPARRAALAVFIQHFERITRSMLAGGVRADVTIALDEHRRPFSP
>CP032707.1|AYG94600.1|1051456_1051777_+|2Fe-2S-ferredoxin
MAKITYIEHDGTEHTVEVKTGLSVMEGAIRNNVPGIDADCGGACACATCHVYVDEDFAAETGRPSAMEESMLDFAENVQPNSRLSCQIRVSDDLDGLIVRLPESQH
>CP032707.1|AYG94599.1|1050545_1051343_+|succinate-dehydrogenase-iron-sulfur-subunit
MVQLTLPRGSKPTTGKVHKAPAGAQNVKTYKVYRYDPETDADPRWDVYEVSADDHGPMLLDALIHIKNEIDPTLSFRRSCREGICGSCSMNIDGRNTLACTKGWAECSSHNITIAPLPHQPVVKDLVTDMSLFYAQYDSIQPYLQSDLPDPEKERLQSPADREKLDGLYECILCACCSTSCPSYWWNQEEYLGPAALLQAYRWIADSRDDATQKRLDDLEDPFKLYRCHTIMNCAQVCPKGLNPAKAIAETKKLMVSPSRKKTPA
>CP032707.1|AYG94598.1|1048748_1050533_+|succinate-dehydrogenase-flavoprotein-subunit
MAAYELIDHEYDVVVVGAGGSGLRAALGAAQQGLKVACVTKVFPTRSHTVAAQGGISASLGNMGEDSWQWHMYDTVKGSDWLGDQDAIEYLVRNAPQAVYELEHWGVPFSRTDEGKIYQRAFGGMTRNFGEGPVQRTCAAADRTGHAILHTLYGQSVRREVKFFVEYFALDLIMQDGACTGVTALQLDTGQMHQFRAKMVVLATGGYGRAYFSATSAHTCTGDGNAMVLRAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLTNSEGERFMERYAPTVKDLAPRDMVSRSMTIEIREGRGVGPNKDHIFLHLDHLDPAVLHARLPGISESAKIFAGVDVTKEPIPVIPTVHYNMGGIPTNYHGEVLTLRDGNPDSVVPGLMAVGEAGCVSVHGANRLGSNSLTDLVVFGRAVGLRCGEVVDKNAAVPSASKVQTDAHIARLDRFRNASGSTPTAHLRLEMQRAMQADAAVFRTGKTLEEGVQKLRSIEAAGADIKTTDRGLIWNTDLIETLEYDNLIAQAVVTIEGALNRTESRGAHAREDYPDRDDENWMKHTLAWKRPGEGVQIDYRPVHKYTMTDEVSYIEPKARVY
>CP032707.1|AYG94608.1|1061003_1063205_-|S9-family-peptidase
MKNLFLSVALPALMLAAAPALAEGVSADPAAASATTLPPHFPRDLTPEGVKAADDHLALEEVDGAEARAFVAASNAKALAALTGDRRYEPFRQQAEAILTATDRIAMPSFLGEGLGNFWQDAANPKGVWRRTTLDSYRTAQPQWETLIDVDALAKAEGRDWVFKGANCLAPDETRCLVNLSDGGKDAVTVREFDLTTKTFVDGGFVIPEGKHRISWLDRDTLLIATDFGPGTMTESGYPYIVKALKRGHPLAHATEVYRGQQGDGGYGVSAMVMRDKAGAVEAVLFRRPLDTFRSETWALGADGKPHKLALPERVSVEGVMDGKLVFSPDQAWTFDGQAYAAGSLLALPLGVLGETRQDVRVDAAAATIFAPGPRQSLQSVRVFEDSVVAVIADNVVGTLKRFTPGAQGWTATDIAVPANSAVGLGDSSKAKGRIFVSSQGFLTPPTLSLAEVATGALTELKAAPAKFDASTHVVEQFEATSTDGTKIPYFVTRPRDLAMDGTAATILFGYGGFQASFPPAYKPEMGKLWLENGGVFVQANIRGGGEFGPGWHQAALRENRQRAFDDFAAVARDLEQRKITSPRHLGIYGRSNGGVLTSVSITQHPELFNAAVIESPLIDMLRYQELPAGASWIGEYGDPRIPGDADFIARYSAYQQLRPETKYPRVYITTNTLDDRVHPGHARKFAARLGDQGHDHLYYEDTAGGHSNDADPVANARRWARHYVYLAQQLMD
>CP032707.1|AYG94609.1|1063337_1065506_-|S9-family-peptidase
MNFRTLASAAALCLAAGAAPAMAHTSDTPAVSAAPAGFATSDATDPYLWLEEVEGDRAMEWVKAHNEASLGVLQGDPRYATLHQQALDIVQSRDRIPSPGFTHDGHVDNFWQDADHVRGVWRRTTLDSYRTEAPQWETILDLDALSAAEGANWVYKGASCLPPEERYCLISLSNGGKDAVTIREFDSVTKTFVEGGINLPESKGGASWIDKDTLLIARDFGEGSLTDSGYPRTVRLLKRGQSVDQAVEVFAGQKTDVSVSGYTLRDADGAVQAVLLNRGINFYESETWRLNPDGTTTRLDLPLKSNINALVAGQMVVTTDQDWTAPSGQEFKTGDVIAWDLQAWLADPKTPAKLVIRPGAREAVEAINTTRNRLVVALYENVRGSVYVYDPADWSRTRLDLPQNVTVGVGSASEQDDKIFVSVAGYLNPSSLYLADAATGAVALTKSLPAKFDAAGMRVDQFEARSADGTMIPYFVVHKEAMALDGSNPTLLYGYGGFQSSLLPGYSPTVGKLWLERGGVYVIANTRGGGEFGPKWHQAAQQENRQRAHEDFQAVAQDLIARGVTSQPHLGVMGGSQGGLFMGAMLTQRPDLINAAVIQVPLFDMLRFHKLLAGASWIGEYGDPDIPEQRAWIEQYSPYQKLAAGQPYPEVFIHTSTKDDRVHPGHARKAAARMEELGYPVLFYENTDGGHAAGANLRETARRIALEYTYLTRRLMDQPASQ
>CP032707.1|AYG96288.1|1065635_1066439_-|two-pore-domain-potassium-channel-family-protein
MATAHDHPRGHDRLRLRARLRYFYHGASPAAVKFRLMVIVVDLVIISFFLAAPILKEAGWAFYVVDYLIAAVLALDLAARAYAYSNVRDWLKRPIVWVDLFVLATLLFPAWLANLGFLRLLRFWSLLNSELFWRTIGRRYDDTRVEEITRAMAALVTFVFVVTGFVYAYFRGKAEHINGYLDALYFTVATLTTTGFGDITLPGNWGRVISIVVMLVGITLFIRLAQTLIRPHKVKFPCPVCGLQKHDPDAVHCKACGQILNIPDEGD
>CP032707.1|AYG94610.1|1066474_1067404_+|diaminopimelate-epimerase
MKAVMTASRPPEGRPYVRMNGAGNAFIMVQAFDRPFHPSADQVRALADPAAGLGGFDQLIGVEPSESADAFMRVWNADGSMVETCGNALRCVGWLLLEATDKDEVVIDTAAGPTTARRAPGPVGLGDPAESTTAAHQQVTVDMGAPRLDWTQVPLAEEMDTRGIELQVGPIDAPVLHTPGAVSMGNPHVVFFTDRQDDAFVRGSGSLIEHHPLFPEGVNVGFAKVLDRGHIRLRVWERGAGLTLACGTGACAALVATARRGLTDRRARVTVDGGELTIDWDEATSHVFMTGPVAVEGTGFLPAALSDCG
>CP032707.1|AYG94611.1|1071552_1073130_-|response-regulator
MGQTRRRSSSQTELFPVPPQAAGPADAASPEQQFLRLMSHEMRTPLNGVIGMLGLLSRTRLDGAQRAYAEAAQKSAEHLLGLVNDLLDYARLEAEALEFDPAPVELEALVRGVAELLSPRAHDKGLEIVWSVAADAPDVVADEGRLRQILFNLAGNAVKFTDRGGVRLAVEGQMVEGRRGGAARARLVFIVDDTGPGVPAEARGRIFDEFGHADASDAARFDGAGLGLAVVRRLARAMGGTAVVEDRPDGPGARFRFEAEFPLAPDGAPRPRPLDGVTVAIRTPDPFVRRAAADQIEASGGRAARQAGITLVDHAGAEDGELASRPTQGQAIVLLRPSERDLIDRYRAGGFCGYLIKPLRPASLAERVLAAAGARRGLPVPHARPGEDDRVANVAFKGVRILLVEDNPVGALLAKTLLRREGCVVQSAADGQEALDATKAARFDLIFMDMRMPRLDGPSAARALRARGDQTPIVALTANAFAEDRLACLEAGMDDHLAKPLEADALRAALARWTNAANRAKVAAS
>CP032707.1|AYG94612.1|1073153_1074764_-|ATP-binding-protein
MVARVVTVAFDGVEARRVDVEVQQVATPAGAFAIVGLPDKAVAESRERVRGAFAGIGLALPPKKVIANLAPADLPKEGSHFDLPIALALLASMGVIGPDALDGWAAVGELGLDGQIAGVGGTLPAAMAVNAMGLGLICPEANGPEAAWAGEVRLLAPRSLIGLINHFRGIQVLRPPQPGPVVEGRAVPDLREVKGQEGAKRALEIAAAGGHNLLFVGPPGSGKSMMAARLPGLLPPLTPMERLETSMVWSVAGLIERGALTRDRPFRAPHHSASMAALTGGGLKAKPGEASLAHNGVLFLDELPEYSPQALDSLRQPLETGEIVVARANAHVRYPARFQLVAAMNPCRCGLGGPGRGACGKAPRCQKDYQNRISGPMFDRIDLTVETPPVTAADMILPAPAEGTAEAARRVAAAMEMQQARVAEAGLEGTQALNARASGEALERFAAPDAAGRALLMKAGETGELTARGWTRTLRLARTIADLDGADGVLRRHVAEALMYRRTTVGAQDDFDRQASRRAMFPVYEPGAAQTPFACD
>CP032707.1|AYG94613.1|1074851_1075799_-|glutathione-synthase
MLKVAIQMDPLEAVNVESDTTFLMALTGQARGHRLWVYDFRTLALEDGRLFCRARPVSVQRKQGDHADFGPEERLDLARDVDVILMRQDPPFDMAYVTATYLLERVHPQTLVVNNPAEVRSAPEKLIATLFPGLQPPTLVSSDPEALVDFHRRHGDVVLKPLHGAAGSGVVRLKADDPNLEALIEIHAAGSRDPLVIQKFIPAVAAGDKRIILIDGEPVGAINRIPAKNQVRSNLRVGGTAAPVELTPRDLEICAAIGPYLKERGLIFVGIDVIGDYLTEINVTSPTGAQQLLKFAGVDATERMWEVIEARKAAA
>CP032707.1|AYG94614.1|1075917_1076730_-|hypothetical-protein
MTREEAEAILTQAGQADEAAFPLLECAIACAIHDYPFRDPAPVRILADHAAQRLKERAANEGPDDALTEALAGDLRLNGDLINYDHPANTDVIDVAERRRGLSAVLVIFYLDAARRAGLTAAAVDFPGHVLLRVETPEGPVALDPFSQGRLVLPSELTRRALLAGLTPHVADRLDLLMAPVSERQALIRLQNVLFTRALQVQDYEGAERSALRRALLDPEDHRPWLDVAAARERQGALTGAVQALSRARSLGEPAEACDARLDRMRMRLN
>CP032707.1|AYG94615.1|1076726_1077155_-|YraN-family-protein
MSRGLRPAAAPRRPKAGWRRALGGRSHRQGHDAEWLAALWLMLKGYQILAFRLKGRGGEIDILARRGRVLAVVEVKRRASLEAALAALGPEQHRRLASAGQAVARGRPGLSGLELRIDMVALAPRRFPRHLRGVISTGADSL
>CP032707.1|AYG94616.1|1077151_1078024_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MSDAPLFPPTAPPARPVSPGLYLVATPIGNLRDMTLRALDVLAAADLVLAEDTRVTAKLLTAYGLKAKLERCDDHASARAAEIAVERLKAGEVVALVSDAGTPLVSDPGYVVARAAVAEGLPVHPVPGPSSLLAALCIAGLPADRVLFAGFLPPKSGARRSALEELRPGRQTLVFFESGPRLRDSLADMAQVLGPRPAAVARELTKLYEECVRGTLADLAADPRCDAPKGEIVIVVGPGEAEVASAADADAALAEALTRLPPGEAAAEVSRALNLPRKPLYKRALELKGR

Crispr_ID: CP032707_3

• CRISPR_ID: CP032707_3
• CRISPR_location: 1600819-1600901
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP032707_3

Consensus_repeat	Method
CCTTCTCCCGCAAGGGGAGAAGGA	CRISPRCasFinder

spacers of CP032707_3

>3.1|1600843|35|CP032707|CRISPRCasFinder
AGTTTTCTGCGCTAACGCCTGCGGCTGCTTGAGCG

CRISPR arrays and Neighbor proteins around CP032707_3

CRISPR arrays

The CRISPR arrays of CP032707_3

>merge|CP032707|3|1600819-1600901|CRISPRCasFinder
CCTTCTCCCGCAAGGGGAGAAGGAAGTTTTCTGCGCTAACGCCTGCGGCTGCTTGAGCGCCTTCTCCCGCAAGGGGAGAAGGA

>CP032707|3|3|1600819-1600901|CRISPRCasFinder
CCTTCTCCCGCAAGGGGAGAAGGA	AGTTTTCTGCGCTAACGCCTGCGGCTGCTTGAGCG
CCTTCTCCCGCAAGGGGAGAAGGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP032707.1|AYG95055.1|1607145_1608969_+|DUF885-family-protein	unknown	unknown	gnl|CDD|227142
CP032707.1|AYG95042.1|1594768_1595515_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl|CDD|176643
CP032707.1|AYG95051.1|1602928_1603813_-|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|176159
CP032707.1|AYG95052.1|1603991_1605098_+|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl|CDD|176260
CP032707.1|AYG95046.1|1598687_1599248_-|hypothetical-protein	unknown	unknown	gnl|CDD|270619
CP032707.1|AYG95048.1|1600914_1601700_+|RNA-methyltransferase	unknown	unknown	gnl|CDD|223639
CP032707.1|AYG95045.1|1598118_1598439_+|DUF962-domain-containing-protein	unknown	unknown	gnl|CDD|226773
CP032707.1|AYG95041.1|1594342_1594693_-|DUF1428-domain-containing-protein	unknown	unknown	gnl|CDD|377795
CP032707.1|AYG95054.1|1605972_1606806_+|S-formylglutathione-hydrolase	unknown	unknown	gnl|CDD|131868
CP032707.1|AYG95053.1|1605184_1605565_+|VOC-family-protein	unknown	unknown	gnl|CDD|319923
CP032707.1|AYG95044.1|1596029_1598024_+|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|223587
CP032707.1|AYG96329.1|1593708_1594338_+|HAD-family-hydrolase	unknown	unknown	gnl|CDD|319799
CP032707.1|AYG96331.1|1606811_1607042_+|hypothetical-protein	unknown	unknown	unknown
CP032707.1|AYG95047.1|1599642_1600674_+|S1/P1-Nuclease	unknown	unknown	unknown
CP032707.1|AYG95040.1|1591720_1593643_+|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl|CDD|235549
CP032707.1|AYG95049.1|1601910_1602234_+|YnfA-family-protein	unknown	unknown	gnl|CDD|235016
CP032707.1|AYG96330.1|1605582_1605864_-|DUF4242-domain-containing-protein	unknown	unknown	gnl|CDD|379428
CP032707.1|AYG96328.1|1589433_1591314_+|DNA-primase	unknown	unknown	gnl|CDD|235551
CP032707.1|AYG95043.1|1595590_1595803_-|flagellar-hook-protein-FlgE	unknown	unknown	gnl|CDD|224663
CP032707.1|AYG95050.1|1602230_1602932_-|NAD-dependent-deacylase	unknown	unknown	gnl|CDD|234777

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP032707.1|AYG95055.1|1607145_1608969_+|DUF885-family-protein	gnl|CDD|227142	COG4805, COG4805, Uncharacterized protein conserved in bacteria [Function unknown].	0
CP032707.1|AYG95042.1|1594768_1595515_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl|CDD|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	2.11888e-42
CP032707.1|AYG95051.1|1602928_1603813_-|LysR-family-transcriptional-regulator	gnl|CDD|176159	cd08470, PBP2_CrgA_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 1. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.10694e-106
CP032707.1|AYG95052.1|1603991_1605098_+|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl|CDD|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
CP032707.1|AYG95046.1|1598687_1599248_-|hypothetical-protein	gnl|CDD|270619	cd14486, 3D_domain, 3D domain, named for 3 conserved aspartate residues, is found in mltA-like lytic transglycosylases and numerous other contexts. This family contains the 3D domain, named for its 3 conserved aspartates. It is found in conjunction with numerous other domains such as MltA (membrane-bound lytic murein transglycosylase A). These aspartates are critical active site residues of mltA-like lytic transglycosylases. Escherichia coli peptidoglycan lytic transglycosylase (LT) initiates cell wall recycling in response to damage, during bacterial fission, and cleaves peptidoglycan (PG) to create functional spaces in its wall. MltA has 2 domains, separated by a large groove, where the peptidoglycan strand binds. The C-terminus has a double-psi beta barrel fold within the 3D domain, which forms the larger A domain along with the N-terminal region of Mlts, but is also found in various other domain architectures. Peptigoglycan (also known as murein) chains, the primary structural component of bacterial cells walls, are comprised of alternating beta-1-4-linked N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc); lytic transglycosylases (LTs) cleave this beta-1-4 bond. Typically, LTs are exolytic, releasing Metabolite 1 (GlcNAc-anhMurNAc-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala) from the ends of the PG strands. In contrast, membrane-bound lytic murein transglycosylase E (MltE) is endolytic , cleaving in the middle of PG strands, with further processing to Metabolite 1 accomplished by other LTs. In E. coli, there are six membrane- bound LTs: MltA-MltF and soluble Slt70. Slt35 is a soluble fragment cleaved from MltB. Bacterial LTs are classified in 4 families: Family 1 includes slt70 MltC-MltF, Family 2 includes MltA, Family 3 includes MltB, and family 4 of bacteriophage origin. While most LTs are related members of the lysozyme-like lytic transglycosylase family, MltA represents a distinct fold and sequence conservation.	6.43204e-27
CP032707.1|AYG95048.1|1600914_1601700_+|RNA-methyltransferase	gnl|CDD|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	4.71511e-80
CP032707.1|AYG95045.1|1598118_1598439_+|DUF962-domain-containing-protein	gnl|CDD|226773	COG4323, COG4323, Predicted membrane protein [Function unknown].	5.0634e-44
CP032707.1|AYG95041.1|1594342_1594693_-|DUF1428-domain-containing-protein	gnl|CDD|377795	pfam07237, DUF1428, Protein of unknown function (DUF1428). This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown. The structure of this family shows it to be part of the Dimeric-alpha-beta-barrel superfamily. Many members are annotated as being RNA signal recognition particle 4.5S RNA, but this could not be verified.	1.98778e-49
CP032707.1|AYG95054.1|1605972_1606806_+|S-formylglutathione-hydrolase	gnl|CDD|131868	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. [Cellular processes, Detoxification].	5.90192e-134
CP032707.1|AYG95053.1|1605184_1605565_+|VOC-family-protein	gnl|CDD|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.19059e-38
CP032707.1|AYG95044.1|1596029_1598024_+|DEAD/DEAH-box-helicase	gnl|CDD|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	2.01102e-113
CP032707.1|AYG96329.1|1593708_1594338_+|HAD-family-hydrolase	gnl|CDD|319799	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ. Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.01018e-77
CP032707.1|AYG95040.1|1591720_1593643_+|RNA-polymerase-sigma-factor-RpoD	gnl|CDD|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
CP032707.1|AYG95049.1|1601910_1602234_+|YnfA-family-protein	gnl|CDD|235016	PRK02237, PRK02237, YnfA family protein.	3.94373e-40
CP032707.1|AYG96330.1|1605582_1605864_-|DUF4242-domain-containing-protein	gnl|CDD|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	7.1458e-23
CP032707.1|AYG96328.1|1589433_1591314_+|DNA-primase	gnl|CDD|235551	PRK05667, dnaG, DNA primase; Validated.	0
CP032707.1|AYG95043.1|1595590_1595803_-|flagellar-hook-protein-FlgE	gnl|CDD|224663	COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and secretion].	4.32762e-05
CP032707.1|AYG95050.1|1602230_1602932_-|NAD-dependent-deacylase	gnl|CDD|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	2.67349e-114

Protein sequences

>CP032707.1|AYG95047.1|1599642_1600674_+|S1/P1-Nuclease
MNRQVKRLMISAAAVMLVAAPAVQVEAWGSSGHRVIGVAAMRALPGDLPAFLRTADAAADVGEYSREPDRWKGAGQPHDRERDTAHFVDMDDQGRVMDARGMTLADLPRLKSEYDAALTRAGLDVDKAGYLPYAIMDAWQNLERDFAYWRVLTAAEARETDLSKQAWYRADRERREQLILRDIGVLSHFVGDGAQPHHTSIHFNGWAGEANPERFTTSRRTHGEFEGAFTSRTLRLDAVEAAMAPMNVEGFDVRVRTAAHLNATLATVIPFYRMEKAGAFKDTDPRGAVFVNERLAAGAAELRDFVSAAWRVSASSSIGWPAVKVAEVEAGRVDPWTSLVGED
>CP032707.1|AYG95046.1|1598687_1599248_-|hypothetical-protein
MLSTAAALAMLWTMAFSGSGEPVPYDAAVARDAAVLETAATAPGSIESSETDLSPEQLELMEGDPDWRASARLYHAGGGGATGNDSLGCRPVPMRTVAVDPRVIPRRTKLFIRETVGLRLANGEVHDGYWYASDTGGAIKGAKIDLYTGHGRGSMRQAQGLNMKTLTIADAGDFDGCPPAWETASK
>CP032707.1|AYG95045.1|1598118_1598439_+|DUF962-domain-containing-protein
MSIEQPEGRYASFEAFYPYYIHEHANRTCRRIHVVGTGLVIAAFAAFLATRNPWWLPAMPVVGYGFAWVGHFFFEKNRPATFRYPLWSLMGDFRLFFETVSGKRKF
>CP032707.1|AYG95044.1|1596029_1598024_+|DEAD/DEAH-box-helicase
MPFPAIHPALDRALLNKGYLEPTPVQAAVLEGHGEADLLVSAQTGSGKTVAFGLAAAPTLLGEDERFGQADTPLMLAIAPTRELALQVAAELEWLYAEAGAKIVTCVGGMDARKEARALNYGAHVVVGTPGRLKDHIDRGALDLSAARVVVLDEADEMLDMGFREDLEYILEQAPEERRTLLFSATIARDIAILAKRYQKDAVRIDTVDRSQPHNDIEYRAMRIAPNEIERAVVNVLRYFEAPGVLVFCSTRDSVRHLQASLQERGFASVSLSGEMGQRERNEALQALRDRRARVCVATDVAARGLDLPDLGLVIHAELPINKATMLHRSGRTGRAGKKGISVLLVPHSRRRKAEMLLGSAGVEAVWSGAPTADEIRAQDEQRLLAAPVFAEEGSDEDAGLVEKLVKERTPDDLARALLVLLRKNLPAPEDLTDPGEGPQRKPRRERDAAGGDDYAPAPWPGDRLQPDEVTWFRLDIGRNRNADPKWLIPLICRIGGVTKQQIGSIRTFPEETRFEIALSHADAFRAAAAQSKEEARITPSEAPTPGSMKGARNRNVERDGEARPFAKKPFRRDEDGQARPPFKKKPWSPEGDAGRSEGGERPFKKPYAARADAAPGEGGFAKKPGFKDKGDKKPFKPKAGFKGKPDFKAGGKPFAKGPKAKRA
>CP032707.1|AYG95043.1|1595590_1595803_-|flagellar-hook-protein-FlgE
MIPPLSTAAAGMQAASARLESSARRVASGEMENYAIEAVEQIRAKSDFSANAAVARTADDMAGTLLDILV
>CP032707.1|AYG95042.1|1594768_1595515_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MAQSRPGPSGRSTIFMQVHPYQGGDLILASPSVDADGWLSAVHSQAEDASSPPLSWSGPLGAASYALVVEDPDAPREEPALHWLLWNIPGSTTALPGDIEAGFHPAATPGMIQGRNSRGEHAWLGMAPPPGETHRYHFQLFGLDRRLHLPVDTPLAEVLHVLKAATLFKGELIGRFRGPVDVGDAASPARTGSYGVDPAVDHVTRAEEAAGRGPLDSGDIDRHAPHDPEGVVRPRGGEPPDPKRPFRL
>CP032707.1|AYG95041.1|1594342_1594693_-|DUF1428-domain-containing-protein
MSYITGFLTPVKTENKDRYIESARVAWPLFKGYGALAHVENWGTDVPDGKLTSFPMAVKLEDGEVVVFSWLVWPDKKTADDAWAKMEKDPAFADMDMPFDGKRMMWGGFETVFEER
>CP032707.1|AYG96329.1|1593708_1594338_+|HAD-family-hydrolase
MPPYRLVIFDFDGTLADSLPWFRSVFSDMADRFGFARLTPDEMEALRGLSAREIIARMKVPAWRLPRIVSHMRREKLAAAASTPLFAGAAACLADLRAAGVETAIVSSDSDESVRAVLGEAAASIDHFDCGASLFGKAAKFRALLKRTGVAASDALCVGDEIRDIEAARDAGTAAGAVAWGYTLPEALAARAPDHMFADVEAMRRMLLP
>CP032707.1|AYG95040.1|1591720_1593643_+|RNA-polymerase-sigma-factor-RpoD
MSAQTETQDTEVNSDGPLLDLTDAGVKKFIRQAKARGYVTMEELNKVLPSEEVTPDQIEDTLAMLSEMGVNVVEAEEDAVEATGTDVAAAAETSIAEAPAKAAYDRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGRDAMISGLCESALTFEAIMVWREELANNRILLREVIDLDATYGILNPASLPHNQPAPAQPTGEPEGDGEEDDDEDFDDGGAMSISALEAELRDGVMEVLDAIAADFGDFRKLQDKLVEARLKGEVLTAKDQKTYEALSTAISDRLKTMKLNNARIEALVEQLYAINKRLIGQEGRLLRLADGYGISRPEFLKAYFGSEMDPTWAERIKEMGVRWTKFSENESTQIADIRAHIAAVATEAGVPIDDYRRIVQMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIGREATPEELAERLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRRLRSFLDS
>CP032707.1|AYG96328.1|1589433_1591314_+|DNA-primase
MRFDERFIEELKARLRPSDIIGRTVKLKRQGREYVGLSPFSKEKSPSFFVNDDKGFFHDFSSGKHGDVISFLQETERLSFVEAVSRLAAEAGMQLPAEDPQAAEREQKRQGLADWMDLAQKWFAANLRRNVGKAAREYLEKRGLPEDQWERFGLGYAPNDREGLKAALIQRGARPGDLVEAGLLIAPEGGGQPYDRFRDRLMFPILDARGRIVSFGGRAMNPDDRAKYLNGPETSLFHKGATLYGLPEARRILGVEKRGEQGIVVVEGYMDVIACQRAGIAAVAPMGTALTEEQMGLLWRTSAEPTLCFDGDGAGQRAAARTVERALPLLKPERSFQFVTLSGGLDPDDMLREKGAAALREAMQQTVPFSKKLFEKECFDVGALDTPEKEASLLVRLRKAAATIADPDLSKTYKDYLVGAFYQLVRPTEQEKKQAHRVIYRDRKARQAQAIMDVTPEARLAAKSLSQAPKPIMSAVIEGLISYPSIISERAEVLGTQSFGDPDLDRLLGDLVRITYDVSSMSDGLLRSRLRALGHDGILKRVDRTASIAHAPFLETGISLEEAEKSLRRAIDALLQALALNRALTELKRDADFDLVTFGGLKGQRDALERYISSGEIWTDSEMTVH
>CP032707.1|AYG95048.1|1600914_1601700_+|RNA-methyltransferase
MTELTPPVVILDKSQMADNIGAVARVMANFGLSELRLVSPRDGWPQDRAWATASGADWVLEGVRVFDSVAEAIADLNTVFATTARPRETRQPVRTPRESARILYDDTASGLKTGLLFGGERAGLETTDIALCAGITTIPIDPRHHSLNLAQAVAINAYEWRTLILDAPPPRFREGEPPASNDLLVGMYEHLEAELDNGGFFYPPEKKRSMSQNLRVMLGRAAFTEQEVATLRGAIHALAKGRGRVLAKLAAERAEAAKKGE
>CP032707.1|AYG95049.1|1601910_1602234_+|YnfA-family-protein
MKTVLVYPLAALAEIGGCFAFWAWLKLDRSPWWLVPGVLSLIAFAWLLALVPADAAGRAFAAYGGVYIVASLAWMALVEKTTPDRWDVIGGAVCLIGAAIILFGPRA
>CP032707.1|AYG95050.1|1602230_1602932_-|NAD-dependent-deacylase
MNLVVLTGAGVSAESGVPTFRASDGLWEGHRVEAVATPEGFAANPALVQDFYNQRRRQLASVQPNAAHRALADLAARWTGDFLLVTQNVDDLHDRAHLETPPASGFELIHMHGELKKARCTASGVVCDWDGDLEAAHVSPHHPRGVLRPHIVWFGEIPLEMERIERALARCDLFVSIGTSGAVYPAAGFVQLARMAGARTVEINLEPTQGASLFDEGVYGPASETVPAFFGAL
>CP032707.1|AYG95051.1|1602928_1603813_-|LysR-family-transcriptional-regulator
MSRWDGIDEFTAVAEQASFSAAARRLGLSTSAVSREIARLEDRLQTRLLHRTTRRVELTDAGRDFLARCRRLIDERDEALAAVQPDDQAPRGLLRMTCSVSYGERFIAPAVNAFARQNPELRIELDLDNRLRDLVGDGYDLAVRFGHLTDSRLMARRLASRRLILCASPDYLARRGAPRDLSEIASHDGLIGSAEHWRFTEAGREVSLRPTGRWRCNSGAAVLDAALQGLGLCQLPDFYVAEALASGALVSLLDDQRPPDEGVWAVHPHPRHVPPKVRAMIDWLHESLAQRSPA
>CP032707.1|AYG95052.1|1603991_1605098_+|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MKTRAAVAFEAKRPLEIVEVDLEGPRWGEVLVEIKATGVCHTDAYTLDGLDSEGIFPSILGHEGAGVVVEVGPGVTSVEVGDHVIPLYTPECRQCKSCLSRKTNLCTSIRATQGKGLMPDGTSRFSYKGQAIAHYMGCSTFSNYTVLPEIALAKIRKDAPFDKACYVGCGVTTGVGAVTNTAKVTPGSNCVVFGLGGIGLNVIQGLKMVGADKIIGVDINNDKEEWGRRFGMTDFINPKTVSDVVAEVVRLTDGGADYTFDCTGNIDVMRQALESCHRGWGESIIIGVAEAGKEISTRPFQLVTGRVWKGSAFGGARGRTDTPKIVDWYMDGKIEIDPMITHTFGLEDINKAFDLMHEGKSIRSVIVF
>CP032707.1|AYG95053.1|1605184_1605565_+|VOC-family-protein
MFTHITLGANDVEASRKFYDAVFGALGLEPGAADPRGRYWWRTSRGAFAVGKPIDGEAACHANGGTIGFAAASPEAVVAFAEAGVAAGGVAIEDPAGPRETPFGVMHLAYLRDPSGNKICAVHRPG
>CP032707.1|AYG96330.1|1605582_1605864_-|DUF4242-domain-containing-protein
MHKFVIERDMPGAGAMSPAQLKEASRASRDVLQQMGPQIEWVESFVTDDRIYCVYTAPDEATIRRHAEAAHMPADRISEVRAVINPSTADAPA
>CP032707.1|AYG95054.1|1605972_1606806_+|S-formylglutathione-hydrolase
METTKTHIVHGGTLRYLKHDSATTGTSMTLSVFTPAGEGPFPVLIWLSGLTCTEDNFTTKAGAYKAAAEHGVIIVAPDTSPRGEGVADDPAYDLGQGAGFYVDATQAPWAPHFRMESYVTGELIDLIDAEFPTTKTRSIFGHSMGGHGALTLALRHPELFKSVSAFAPIASPTRCPWGEKAFTAYLGEDRAQWAKHDAALLIESGAAKGVFDDILVDQGDADSFLTDQLKPELLTAAAEKAGQGLTLRMQPGYDHSYFFMASFVDDHVAFHAERLKA
>CP032707.1|AYG96331.1|1606811_1607042_+|hypothetical-protein
MTTSAPDFDAMFADLCTQVGFCLHEKGQKKVVAALPKGLDAAVRAVFAAEGVDEPNAPGDLKRAVRDCIKAHVKPG
>CP032707.1|AYG95055.1|1607145_1608969_+|DUF885-family-protein
MMDRRRLLMSVAAGGALAASGAVRALAQTAPAGGVSAQFRALMDKIAQDLVLSNPETLTMLGMDRGPMAAARCKLNDRSQAKVDADKVKFVEAMKATKAIDRAQLTGVEQTYYDSLEFFGDTAMEGYAFPYGGGFFPSPYTVSQLGGAYQQIPDFLDSQHRIEAADDAEAYLSRLSDFAKGLDDERARMRAEFAAGAVPPDFVIDRTLTQMAAITGTAPADSVMSQSLARRTAEKGIAGDWAARAQAILTKEVYPAIQRQADAFTAVRPGASHDGGVWRLPDGDAYYRYGLKYYTTSSMTPDEVHQMGLEQVADISARADALLKAQGMTQGTVGQRIAALGKDPRFVYPNTDEAKDELLQALNAQMVAMQARLPEYFGRLPKSPCEIRRVPKAIEAGAPGGYYQQPALDGSRPGAYYINLRDTAEWPKWTLPTLTYHEAVPGHHFQIALQMERPDTPILMKVLGFSAYSEGWGLYAEQLADEMGVYENDPFGRIGYLQSLMFRAARLVVDSGLHHKRWSREQGIRYMVDTLGDQESSIATEVERYCVWPGQASSYKVGHTTWARLREDAKRRLGPRFDIKGFHDAGLNLGGVPLTVLERTMNAWTPA

Crispr_ID: CP032707_4

• CRISPR_ID: CP032707_4
• CRISPR_location: 2132720-2132820
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP032707_4

Consensus_repeat	Method
GGCCAAGATCGTCGAGTAATCGACG	CRISPRCasFinder

spacers of CP032707_4

>4.1|2132745|51|CP032707|CRISPRCasFinder
ATCTTCGCCACGCGAGACCAAGGGCTAGGCGGGAGCCTCCGCTCCCGCCGG

CRISPR arrays and Neighbor proteins around CP032707_4

CRISPR arrays

The CRISPR arrays of CP032707_4

>merge|CP032707|4|2132720-2132820|CRISPRCasFinder
GGCCAAGATCGTCGAGTAATCGACGATCTTCGCCACGCGAGACCAAGGGCTAGGCGGGAGCCTCCGCTCCCGCCGGGGCCAAGATCGTCGAGTAATCGACG

>CP032707|4|4|2132720-2132820|CRISPRCasFinder
GGCCAAGATCGTCGAGTAATCGACG	ATCTTCGCCACGCGAGACCAAGGGCTAGGCGGGAGCCTCCGCTCCCGCCGG
GGCCAAGATCGTCGAGTAATCGACG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP032707.1|AYG95463.1|2112618_2114616_-|M61-family-peptidase	unknown	unknown	gnl|CDD|226483
CP032707.1|AYG95475.1|2135277_2136174_+|hypothetical-protein	unknown	unknown	gnl|CDD|371327
CP032707.1|AYG95474.1|2134259_2135192_+|transcriptional-regulator	unknown	unknown	gnl|CDD|372651
CP032707.1|AYG95465.1|2116905_2117421_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl|CDD|223619
CP032707.1|AYG95480.1|2139346_2139652_+|50S-ribosomal-protein-L23	unknown	unknown	gnl|CDD|235586
CP032707.1|AYG95466.1|2117879_2121995_+|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl|CDD|234749
CP032707.1|AYG95476.1|2136319_2137066_-|hypothetical-protein	unknown	unknown	unknown
CP032707.1|AYG95462.1|2112108_2112489_+|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl|CDD|234671
CP032707.1|AYG95477.1|2137633_2137939_+|30S-ribosomal-protein-S10	unknown	unknown	gnl|CDD|179076
CP032707.1|AYG95473.1|2133086_2134244_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|227940
CP032707.1|AYG95481.1|2139656_2140493_+|50S-ribosomal-protein-L2	unknown	unknown	gnl|CDD|236488
CP032707.1|AYG95479.1|2138708_2139347_+|50S-ribosomal-protein-L4	unknown	unknown	gnl|CDD|235404
CP032707.1|AYG95464.1|2114848_2116792_-|M61-family-peptidase	unknown	unknown	gnl|CDD|226483
CP032707.1|AYG95478.1|2137962_2138709_+|50S-ribosomal-protein-L3	unknown	unknown	gnl|CDD|234564
CP032707.1|AYG95468.1|2126557_2127640_-|hypothetical-protein	unknown	unknown	gnl|CDD|236138
CP032707.1|AYG95467.1|2122093_2126287_+|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl|CDD|234794
CP032707.1|AYG95471.1|2129357_2131436_+|elongation-factor-G	unknown	unknown	gnl|CDD|234569
CP032707.1|AYG95482.1|2140495_2140774_+|30S-ribosomal-protein-S19	unknown	unknown	gnl|CDD|178985
CP032707.1|AYG95470.1|2128731_2129205_+|30S-ribosomal-protein-S7	unknown	unknown	gnl|CDD|235398
CP032707.1|AYG95469.1|2128287_2128662_+|30S-ribosomal-protein-S12	unknown	unknown	gnl|CDD|235355

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP032707.1|AYG95463.1|2112618_2114616_-|M61-family-peptidase	gnl|CDD|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	7.86857e-89
CP032707.1|AYG95475.1|2135277_2136174_+|hypothetical-protein	gnl|CDD|371327	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain. This bacterial family of proteins shows structural similarity to other pectin lyase families. Although structures from this family align with acetyl-transferases, there is no conservation of catalytic residues found. It is likely that the function is one of cell-adhesion. In Structure 3jx8, it is interesting to note that the sequence of contains several well defined sequence repeats, centred around GSG motifs defining the tight beta turn between the two sheets of the super-helix; there are 8 such repeats in the C-terminal half of the protein, which could be grouped into 4 repeats of two. It seems likely that this family belongs to the superfamily of trimeric auto-transporter adhesins (TAAs), which are important virulence factors in Gram-negative pathogens. In the case of Parabacteroides distasonis, which is a component of the normal distal human gut microbiota, TAA-like complexes probably modulate adherence to the host (information derived from TOPSAN).	6.74221e-08
CP032707.1|AYG95474.1|2134259_2135192_+|transcriptional-regulator	gnl|CDD|372651	pfam13621, Cupin_8, Cupin-like domain. This cupin like domain shares similarity to the JmjC domain.	5.31319e-05
CP032707.1|AYG95465.1|2116905_2117421_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl|CDD|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	9.04629e-56
CP032707.1|AYG95480.1|2139346_2139652_+|50S-ribosomal-protein-L23	gnl|CDD|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	3.11782e-42
CP032707.1|AYG95466.1|2117879_2121995_+|DNA-directed-RNA-polymerase-subunit-beta	gnl|CDD|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
CP032707.1|AYG95462.1|2112108_2112489_+|50S-ribosomal-protein-L7/L12	gnl|CDD|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	5.10631e-43
CP032707.1|AYG95477.1|2137633_2137939_+|30S-ribosomal-protein-S10	gnl|CDD|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	4.33742e-67
CP032707.1|AYG95473.1|2133086_2134244_+|GNAT-family-N-acetyltransferase	gnl|CDD|227940	COG5653, COG5653, Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane].	1.45663e-31
CP032707.1|AYG95481.1|2139656_2140493_+|50S-ribosomal-protein-L2	gnl|CDD|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
CP032707.1|AYG95479.1|2138708_2139347_+|50S-ribosomal-protein-L4	gnl|CDD|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	3.56146e-108
CP032707.1|AYG95464.1|2114848_2116792_-|M61-family-peptidase	gnl|CDD|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	6.5399e-110
CP032707.1|AYG95478.1|2137962_2138709_+|50S-ribosomal-protein-L3	gnl|CDD|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	4.72873e-120
CP032707.1|AYG95468.1|2126557_2127640_-|hypothetical-protein	gnl|CDD|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	6.93002e-12
CP032707.1|AYG95467.1|2122093_2126287_+|DNA-directed-RNA-polymerase-subunit-beta'	gnl|CDD|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
CP032707.1|AYG95471.1|2129357_2131436_+|elongation-factor-G	gnl|CDD|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
CP032707.1|AYG95482.1|2140495_2140774_+|30S-ribosomal-protein-S19	gnl|CDD|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	4.71409e-62
CP032707.1|AYG95470.1|2128731_2129205_+|30S-ribosomal-protein-S7	gnl|CDD|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	2.48669e-106
CP032707.1|AYG95469.1|2128287_2128662_+|30S-ribosomal-protein-S12	gnl|CDD|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	2.50144e-82

Protein sequences

>CP032707.1|AYG95471.1|2129357_2131436_+|elongation-factor-G
MPRTHKIEDYRNFGIMAHIDAGKTTTTERILFYTGKNHKMGETHDGSATMDWMDQEQERGITITSAATTAFWKEKRLNIIDTPGHVDFTIEVERSLRVLDGAVTVLDGNAGVEPQTETVWRQADKYNVPRIVFVNKMDKIGADFEKSVESIRDRLGAKAVPIQLPIGSEANLKGVIDLVEMKALVWETDQVGANADVRDIPADLADAAAAARQYLVDNAVEIDDEAMESYLGGEEPSVEVLKRCIRKAVISGAFYPILCGSAFKNKGVQPLLDAVVDYLPSPVDIPAIPGLDFKTEEPVSRKASDDEPLSVLAFKIMDDPFVGSITFCRVYSGTMETGQSLLNSSRDKRERVGRMLQMHSNNREDIKIAYAGDIVALAGLKETRTGDTLCDPLKSPVILEKMEFPAPVIEIAVEPKTKADQEKLGVALAKLAGEDPSFTVSTDHESGQTILKGMGELHLDIKIDILKRTYKVEATIGAPQVAYRESISRKVEIDYTHKKQTGGTGQFARVKLVFEPGEPGSDFVFESAIVGGAVPKEYIPGVEKGLKSAKENGLLAGFPVIDVKATLIDGAFHDVDSSVLAFEIASRAAFRELREKGGPKLLEPIMAVEVVTPEEYLGSIIGDLNGRRGMIQGQDMRGNAVVVHAFVPLANMFGYVNTLRGMSQGRAQFTMQYDHYEAVPQHVADEVIKKYA
>CP032707.1|AYG95470.1|2128731_2129205_+|30S-ribosomal-protein-S7
MSRRHRAQKREVLPDPKFGDLVVTKFMNYVMYEGKKAVAENIVYGAFDILAEKKKEQTAVETFHAALDNVAPAVEVRSRRVGGATYQVPVEVRPDRRRALAIRWLVNAARNRGENTMTEKLAAELLDASNNRGTAVKKREDTHKMAEANRAFSHYRW
>CP032707.1|AYG95469.1|2128287_2128662_+|30S-ribosomal-protein-S12
MPTINQLIRKPRKPKPVRNKVPALEGSPQRRGVCTRVYTTTPKKPNSALRKVAKVRLAKNGVEAVCYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHILRGVLDTQGVKDRKQRRSHYGAKRPK
>CP032707.1|AYG95468.1|2126557_2127640_-|hypothetical-protein
MHVVVLGGMIYLAKTERSGVPPLPPPPTILHLEIERPVPPLPTPPQPRPPLPVPAPAPLPEPALERMQEQPPRPAPAPAPVPVPAPTPVPAPVAAPTLAPVPKPAPVTVTAPTAQPTPPLAPKSLPRVAPVPAPTPEAAPQQAPAPIQAPATAPPAAALEQAPSAPVVVAPIRPRKKDEEEGRDGLPAPPAPRLANPAPGAPSAAASGVAGVSDAWRVAPEGQDGRNARALRTSPAGCPATQLLRRGEELICEERFNARAAEGAERGRITGTGNAERDARFAREGAREMERYEAPRRPASGGVGITGPRDCPGSNFGSGCAGDLLNPSLRMDSTQNIQTSRDGPPASAGAPRPREPMKPQ
>CP032707.1|AYG95467.1|2122093_2126287_+|DNA-directed-RNA-polymerase-subunit-beta'
MNQEVLNIFNPVPVTPTFDQIRIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKSLPSRISLMLDMALKDVERVLYFENYIVTEPGLTPLKQNQLLTEDEFYHYQEEFGDDGFTAEIGAEAVRNLLMAIDLNAEAEKHRAELADNPSELKAKKASKRLKLLEAFIESGNKPEWMILTIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVGPELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKENQPGEGKLFANMGEIDAALDAKVISLHAKIKARWTEMNAEGEVVTKVIDTTPGRMKLGALLPHNPNIGYKLLEKNLTKKEIGNLIDQVYRHCGQKATVIFADQMMQLGFREAAKAGISVGKDDIVIPAKKVEYVEETRKQVEEYEQQYADGLITKGEKYNKVVDAWAKATDRIADEMMGEIAQPRVLIKGQEPDINSVFMMANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIVTEEDCGSTRGITLRAVVEGGDVLVSLGQRVLGRYAAEDIKEPGGEVLFPADTYLQEEEVELIDKVGVQSIKVRSALTCEADAGICGMCYGRDLARGTNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAETSFFEATNAGIVKVVGSTVVAAHGDPVAMSRNVVVTVTVDGKDRESYKVPYGARLRVKDGGEVAKNQRLAEWDPYTTPILTEVGGVVRFEDLVEGLSVKEETDEATGIAQRVVSDWRASPRGADLRPAMGVTQGDSYAKLSSGSDARYLLPVGAILSVANGDEVKPGDIIARIPTEGAKTRDITGGLPRVAELFEARRPKDCAVIAEMDGRVEFGRDYKNKRRIKITPEPDADGNQGEAVEFLIPKGKHISVHDGDLIQKGDYIIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHIEVIVRQMLQKVEVIDSAETTLIKGDHVDKVEVDIENAKVEKRGGRIATVQPVLLGITKASLQTRSFISAASFQETTRVLTEASVHGKKDTLEGLKENVIVGRLIPAGTGSYLRSLQKIANDRDAELTQAREEAVEPLPADLALELEQSAD
>CP032707.1|AYG95466.1|2117879_2121995_+|DNA-directed-RNA-polymerase-subunit-beta
MAKSTDGLALGKIAAATSFTGKKRIRYSFGRIPEAVQMPNLIEVQRASYEQFLQRESRPGLRNDEGIEAVFKSVFPIKDFNERAVLEYVSYEFEDPKYDVEECIQRDMTYAAPLKVKLRLIVFETEEETGARSVKDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTFLYALGMDGEEILKTFYETVPYEKRGEGWVTPYKPERWRGVKPEFDLVDADTGEVVAPAGQKISARAAKKLADGGLKSLSLAADALLTKYLASDAVNYQTGEIYAEAGDELDAATIELLEANGFTTIDVLDIDHVTVGAYMRNTLRVDKNTGRDDALFDIYRVMRPGEPPTPEAAEAMFQSLFFDAERYDLSAVGRVKMNMRLETPEVSDEIRVLQKDDVLKVLQILVGLKDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRMERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPYRRVVEGKATDEVVYISAMEEAKHVIAQANIDLKDGEIVEELVPGRINGESQLLTKETVDMMDVSPKQVVSVAAALIPFLENDDANRALMGANMQRQAVPLVQSDAPLVGTGMEAVVAVDSGAVVIARRDGVVEQIDGTRIVVRATGDVEAGRSGVDIYRLSKFQRSNQSTCINQRPIVRVGDEVKAGDVIADGPSTDLGELALGRNVLVAYMPWNGYNFEDSILISERIVRDDIFTSIHLEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIDKDERAMAIERAEIERLGKDRDDELKILERNVYGRLKPLLLGKTAVSGPKGMGRGDVTEEKLAEVSKGLWWQIALDDEKAMGELEAMKKQFEDARKALDRRFEDKVEKLQRGDEMPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKILPIEDMPHLDDGTHVDIVLNPLGVPSRMNIGQIFETHLGWAAAGLGKQIKGLLEQWMDGGMRDALVSRLTEIYGADTPLPQSDEELIELAQNLSKGVPFATPVFDGARISDIEDLLESADLDRSGQSILFDGQTGEQFKRPVTVGYVYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDSFEAGIPESFNVLVKEMRSLGLNVELENS
>CP032707.1|AYG95465.1|2116905_2117421_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MKHIALPLLAAVSLAACASTSDVGYPGLREAVGPATQENWEVGQAAYLMWNSQRRGWTSTPSGLQYRLVSKANPNGAQPTATDTVKVHYRGTFIDGREFDSSYSRNEPATFPLNRVIKGWTEGVALMREGETYEFVIPADLAYGSRWMGTEIPANSALRFTVELLDVNPQG
>CP032707.1|AYG95464.1|2114848_2116792_-|M61-family-peptidase
MKRLLLAASASVLLFATGAPALAQVGTPALPVALAPIPAAKDEAYPGVIKLDVDATDIDRRLVQVRQTIPVSGPGPLVLFYPQWIPGQHGPVGPVANVGGLTFTADGRRLEWVRNTVNPWAYQIEIPAGVTEVQAAFQWLTPIEGAQGRVVVTPEMLNIQWEKALLYPAGYYSRQITFQPTLKLPQGWSYGAGLDTVSFENGLATFAPITLEHLADSPVFAGAHYRQIDLDPGGRSPVRLNVVADTAKMLEATDEHIQLHRNLVQQADRLFGARHYNHYDFLLAVTDKLGGIGLEHHRSSENSVDVKYFTDREATLADRDLLGHEYTHSWNGKWRRPADQLTPNLNEPLQNSLMWVYEGQTQYWGLVLTARAGLMSKQQALDVLAMSAASFQNIPGRQWRAMQDTTNDPIISQRRPQPWGSYQRSEDYYREGSLVWLDADTLIRERTGGKKSLDDFAKAFFGVEDGNWDPAPYTFADVTATLNGVQANDWAAFLRERLDAVGPNSRGPLDGIERGGYRLVFKEEPSGYMGALYKELGRNDFTYSLGFMMNGSNKITSVLWGGPAFDQGLTSGWEVVAVGGRAASADALKEAVTAAKGSSEPIELILKNGDRFKTVRFDYHDGLRYPHLERIEGTPDRLGDILSPKRR
>CP032707.1|AYG95463.1|2112618_2114616_-|M61-family-peptidase
MIITRRLPAAALALLLTSAASTALAQEWTGPQAPAAPTPQNTPLALPRALPPIPAPTAETYPGVIRYEVDATDVEKKIVRVRQTIPVTPGHLVLLYPKFLPGNHAATGPIQLVSGVTVEGGGQRIDWLRDTIDPYAFHIDVPQGVDEITVDFQWLTQPDNATWRVVMTPEMVNLQWEKALLYPAGYRSTGITFAPSIRLPQGWQYGVALDTESFVDGLATFKPTDLYTLIDSPLFGGVNFQRIAIDPRRGNGEGSVHLNIMADTAKDLAPTAEQLSWFENLVAQTDRLFGARPYDRYDFLLAATSKLGGIGLEHHRSSENSVPADFFTNWGKSLGAVGLLPHEFTHAWNGKRQRPADELTANHNIPTQNTLLWVYEGQTEYWGDVLTARSGLASKADILTSFAEVAAFYDNQPGREWRPLQDTNNHNLLGYRTSNPYSSWMRGTGDYYREALLIWLDADTLIREATGGKKSLDDFAKGFFGGDDGSWGPRGYTFDDVVTALNAVHPHDWATFLRTRLDANGPDAKAPLDGLTRGGYRLTYTDSLTADEKRVQSGWANDFQYSLGFTLSSSNKLTGIRWGGRAFEADIGPGWELVAVNDVAASAEKLRDAVTAAKGTDAPIRLLLKNGDRYRTVDFDYHDGLRYPRLERIPGTPDRLGDILSPRRR
>CP032707.1|AYG95462.1|2112108_2112489_+|50S-ribosomal-protein-L7/L12
MADLAKIVEELSALTVLEAAELSKLLEDKWGVSAAAPVAVAAVAGAAAPAEAAEEQTEFTVVLVDGGDKKINVIKEVRGVRTDLGLKEAKDLVEGAPQPVVENVSKQAAEELKKKLEEAGAKVEIK
>CP032707.1|AYG95473.1|2133086_2134244_+|GNAT-family-N-acetyltransferase
MSGHLTSEMRDLAELSEQEKAQWNDWARGDPALSSPYFRVEFAQSAARFSPGSAVAVFKRDGETVGYYPHQRRGATIQPLAAPMSDYHGVIGPREAKPTLAEAAALMQARRFAVSAWVGQAPTGALRDESILSEVAEGGYAAWYAARRRAFPKYFKDKERARRGLDAAFGSVEFEVGLRDHDLLDGLIRQKSAQYVRTGRHDIFACGWTAQVLHALMDADGEDGFGGSLAVLRVDGRVGAVEYSLHAGRTFHMWFPAYSADLARWAPGILLSMETIRIASERGYREFDYGVGGGNAYKKHFSDRTAPVAEITLRQPGLGAALTAAGSAMTQAVGADRAGRIRDSLRRRWAVIEACETHPLARLKGAGRAGLAALGKARGRAALKA
>CP032707.1|AYG95474.1|2134259_2135192_+|transcriptional-regulator
MTERRTRYPGPIAAAAVHPHGLVAQGFAEDAALAAVLDRYPADLFDINLYDYDDEGQVSLRTGARGRLDGGQLLEAIQQGRLWVNMRDVERGWPELWRATMAEFDRVMGDAYPGLKAASRNGQLILSSPKARVPYHFDASGVILFHLRGRKRLFVFPGDEAHLPERSMEQVIARQTTEEIPYVRAFEQDAQAIDLEPGQALTWPFFAPHRVENLDRFCVSLSVDFQTWASRFRRGALYTNAVLRSRGGTPRSTDRMGQAELAARWAASVLLKRTGALKSRLEGFERDFEPDVGAVDGAGRLSVDPAGGQG
>CP032707.1|AYG95475.1|2135277_2136174_+|hypothetical-protein
MKPAVSAAAALSVLAASAVLAAPAMAQDVEIRHAVARVIVIPEDRTDVAVEITQGTSGLPQLQVDRRGGKVRIDGGLGLTRGFGFGADEIRSCRSGAAEARQPGEGASAQVRRIGWVRLEDAPLIVLRTPRDVDVSGSGAVFGAVGRGARSVDLGNAGCGAWTVANVEGAVDLSVGGSGSIRAGSSQTLSASVGGSGSIYAGSTGALAANVGGSGAIDVARVDGDAKVAIGGSGDVRIRGGQASRLAVSIGGSGDVRFDGQAGDVSVSIAGSGDVQVAEATGRVSRSVVGSGTLRIGR
>CP032707.1|AYG95476.1|2136319_2137066_-|hypothetical-protein
MKTVFLASVAAATLIAAPALAQNAIGSVGVAYNYADVEGTDVNRAVVDGTVASPVFGDWTVTFNAEGAYTDVDGMGDDTTLAGAVHLTKKIEDMRFGGFVGASEVLGGTMTTFGLEGQKYLDRATLTGVASYGTVHDADIWTVAGDAAFYATPQLRLNAGASYSNAENLFVGGDVEGWAAGVGAEYQFANSPYSVFGGYDYVKSSDLDMDANVFSIGMRYSFGGGLQARDQAGANLGRSAGVAQLLGN
>CP032707.1|AYG95477.1|2137633_2137939_+|30S-ribosomal-protein-S10
MDQSIRIRLKAFDHRVLDFSTREIVNTAKRTGATVRGPIPLPTLIEKFTVNRSPHVDKKSREQFEIRTHKRVLDIVDPTPQTVDALMKLDLSAGVDVEIKI
>CP032707.1|AYG95478.1|2137962_2138709_+|50S-ribosomal-protein-L3
MRTGVIAKKLGMTRVFADDGAHVPVTVLQLDGCQVVGQRTKERDGYVALQLGAGVKKAKNTAKAQREAFAKAEVEPKAYVTEFRVGEDALLDVGAELSADHFLAGQKVDIQGHTIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQRQDPGRVFKGKKMAGHLGQEVVTTQNLTVVRVDAERGLILIKGAVPGHDGAYVKISDAIKKARPADAPFPGAVKSAAAQPASTPAEEAPAVEATEGGEA
>CP032707.1|AYG95479.1|2138708_2139347_+|50S-ribosomal-protein-L4
MKLSVIKLDGKAAGDVELSDAVFGISDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRTGKKMYKQKGTGGARHGSRRAPQFVGGSPAFGPVVRDHGFSLPKKVRALALKHALSSKVKAGDLVVVDSVSVKEPKTAALRDTFGKLGWTKALIIAGPEVDANFGLAARNIPHIDVLPNAGLNVYDILRADKLVLTKAAVEAIEARFAEKEAA
>CP032707.1|AYG95480.1|2139346_2139652_+|50S-ribosomal-protein-L23
MAAAQPTAKHYDTILAPVITEKATILSEQNKVVFRVAGTATKDEIAAAVESLFKVNVLKVNTLVQKGKTKRFRGILGRRVDIKKAIVTLAEGQSIDVTTGL
>CP032707.1|AYG95481.1|2139656_2140493_+|50S-ribosomal-protein-L2
MALKHYNPTSPGRRALVLVDRSELHKGRPEKSLTEGLTKSGGRGQGGRIAVRFRGGGAKTLYRKIDFKRRKFDVVGTVERLEYDPNRTAFIALVVYPDGEKTYIIAPQRLHAGDTIVAGEKVDVKPGNAMPLRSMPVGTIIHNVEMKPGKGAQLARSAGAYAQLVGRDQGYAQIRLGSGELRMVLDGCMAVVGAVSNPEHMNQNLGKAGRKRHMGWRPHVRGVAMNPIDHPHGGGEGRTSGGRTPVTPWGKDTKGTRTRKNKATDKFIIRSRHVKKAR
>CP032707.1|AYG95482.1|2140495_2140774_+|30S-ribosomal-protein-S19
MARSSWKGPFVDGYLLKKADAAQSSGRKDVIKTWSRRSTILPQFVGLTFGVHNGQKHVPVSVSEEMVGMKFGEFAPTRNFPGHAADKKAKRK

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP032707_1	1.1|907512|34|CP032707|CRISPRCasFinder	907512-907545	34	CP032707.1	1234022-1234055	2	0.941

1. spacer 1.1|907512|34|CP032707|CRISPRCasFinder matches to position: 1234022-1234055, mismatch: 2, identity: 0.941

cgctcaagcagccgaaggcgttagcgcgcccaaa	CRISPR spacer
cgctcaagcagtcgaaggcgttagcgcacccaaa	Protospacer
***********.***************.******

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1790377 : 1798176	12	Geobacillus_phage(33.33%)	portal,tail,protease,head	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP032707|1790377:1798176|DBSCAN-SWA
AATGGAGAACCACATGGATTGGCGACGACCGTTCGGTCGGCGGCGCGTTGCTGCGCCCGAGATCAAGGACAGCCGGGCGGGGCCGCTGATCGCCCTGACCGGGGCGGGCCGGGCGCGGTGGACGCCGCGCGACTATGCGCACCTGGCCGAGGAGGGGTTCGCCAGGAACGCCGTGGCCTATCGCTGCGTGCGGATGATCGCCGAGGCGGCGGCCTCGACCCCGCTGATGGTGATGGTCGGGGGCGTGCGAACAGCGGAGCATCCGCTGGCGCGGCTGCTGGCCAAGCCCAATCCGGAGCAGTCGGGCGGGGAGCTGATGGAGGCGATCTACGGCGCGCTGCAGACGGCGGGCAACGCCTATGTCGAGGCGTCGGGGGACGCGGACGGCGACGGGGCGCCGGATGAATTATGGGCGTTGCGGCCGGACCGGGTGAAGGTGGTTCCGGGGCGGGCGGGCTGGCCCGAGGCCTATGAGTATGCGGTCGGCGGGCAGGCGGTGCGGATCGCCCGGCACGGCGACGGCTGGTCGCCGGTCATGCACCTGAAACTGTTTCACCCGACGGACGATCATTACGGCTTTTCGCCGCTCGAGGCCGCGGCCTTCGCCATCGACGTGCACAACGCCTCGGGGGCCTGGAACAAGGCGCTGCTGGACAATGCGGCGCGGCCGAGCGGGGCTCTGGTCTATGGGGCGAAGGACGGCGAGCGGCTGACGGCGGATCAGTTCGAGGCGCTGAAGGCGGAGCTGGGCGAGGCCCATGCGGGGGCGCGCAACGCCGGGCGGCCGCTGCTGCTGGAGGGCGGGCTGGACTGGAAGCCGATGAGCCTGACGCCGCACGACATGGATTTCATCGCCGGCAAGCACGCGGCGGCGCGCGAGATCGCCCTGGCCTTCGGGGTGCCGCCGCAGCTGCTGGGGATTCCGGGCGACGCGACCTACGCCAACTATCGCGAGGCCAACGCCGCCTTCTGGCGCGCGACGGTGATCCCGCTGGTGAGGAAGGCGGCGGGGGCGATGACGGGCTGGCTGGGCGGGCGGTTCAGCGACTGCCGCATCGAGCCGGACCTGGACGCGGTTCCGGCCCTGCAGGTCGAGCGCGACGCCCTGTGGGCGCGGCTGAACGCGGCGGGTTTCCTGACGGACGAGGAGCGTCGGCGCATGGCGGGGGTGGGGGAATAGGGCGCGACCCTCTCCCTCCCCTTCATGGGGAGGGTGGTCGCGATAGTGACCGGGTGGGGCGGGCGCGGTGATGCAGGGCGCGCCCGAATAACCTTGCCGCCCCCACCCGGCCTCGCCCTTTGGGCTCAGCCACCCTCCCCGGGACGGGGAGGGAGAAAGGTGGTGATGATGACTGAGTTGCGAAAAATTCCCGTCGCCCTGGTCGCGGCGCTGCTGGTGCAGACCCTCGGCGGGCTGGTCTGGGCCGGCGGGGCGGCGGCGCGGATCGCGACGCTGGAGCAGAGGGTCGGCGAGCAGAGGCTGGTCGCCGAGCGGCTGGCGCGGCTGGAGGCCCAGGGCGAGGCCACGCGCGCGGCGGTCGAGCGGATCGAGCGACGACTGGAGGAGAAGTGATGGGGCATGACACGTCCTTCTCCCCTTGTGGGAGAAGGTGGCCCGTAGGGCCGGATGAGGGGTTGCGCGACCCCTCGCCCGACCGCGCGAGGACGACGGCTGCGCCGCCGTGCGCGGTCTCCCTCTCCCGCAAGGGGAGAGGGGAGGTTGTCATCCACGGCTACGCCTCCCTGTGGGGCGTGGCGGACCTGAACGGGGACGTCGTCGCGCGCGGGGCCTTCGCCGAGAGTCTGGCGCGGACCGGCGCGGGCGGGGTGCGGATGCTGCACCAGCACGAGAGCCGCGCCGTGGTCGGGGTCTGGGACGAGATGGTCGAGGACGAGCGCGGCCTGTGGGTTGAGGGGCGGATTGAAGACTGGTCCGCCGAGGCCCGCTACGCCGCCGCCCTGACGCGAGCGGGGGCGCTGGACGGGCTGTCGATCGGCTTTCGCGCGGCGAAGGCGCGACGTGAGAGGCGGTTAAGGGTGCTGAGCGCGGTGGAGTTGTGGGAGGTCTCGCTGGTGACCTTTCCCATGCTGCCGGGGGCGCGGTTCCGGTCGGTCGCGAGCGGACGCGCGGCCGCCGAACCCTAGCGGGGGCGAGGGAAACGACCGCGGGTCAGTCGGCCATGGTTCTCAGGACCGCTTCCCACTGGGCGATGCCGGGGGCGATGGTGTCCAGGGGGAGGCGTTCATTGAGGCCGTGCGAGACGTCGTCCTCGGGTTTCATGAAGATGGTGCTGACGCCGTAGGAAGGAACGCCCTGGGCGCGGAAATGCATGCTGTCGGTAGCCCCCGCCGCCATGGACGGCGTGACGGTCAGCCCCGGATAGCGGGCGTGGACCGCCGCCGTGACGGCGCTGACGACGTCGTCGCGCAGAGGCGAGGCCGGCGCCGCGACGACGCCGGTGTCGAGCAGGTCCACCGTTACGGACGGATCGGCGATGATGGTCTGGATCTGGTCGCCGATGGAGGCCCTGGAGGCCCCGGAAGGATGCGGCAGTTGACGATGGCCTCGGCCCGCTGCGGCAGGGCGTTGGGGGCGTGGCCGCCCTTGGGCGGGCACGGCCAGGAGCCCCATGGCCGTGAGCGCCGAGCGGGATTTCGATGCCGTCACCGGAGGCCTCACAGTGAGGTTCGGACGGACTATGGAACGGTGGTCGTTGTTTGTCACTTCGGGGGCAGGTTGCCCTTCGGCGACTTCCCCATGCTGGCCAAGGCGCGGTTCAGGGGCGGTTGAGCCAGCGATTGTGCGCAAAGAAGCAGACGACCTGGATAGCGCTCAACCCTAGCAGGGTGTCCCACGCCGAGGTCAAGTTGAAGCCCAGATCGGCGAAGATAGGGGTGAAGAGATTGAAATCCATAAGAACCTGCCAGCCTGCAGCGAGGAAAGCTGCGCCGCCGAGCAAGCTCCAGACGCTTGAAGAGCGTTCATCTCTGTTCTGAACAGGACGGGCGCCGGCCTTGATCTGCTCTTGAAGGAGGCTGGCCCTGTCTCGGGACCAGAGCCAAAGGCCGACGACGAGGAGGCCCGCGACGATGGTGATTCCTACGAGCATTTGTTTAGCGATAGCGGCGATCACGTCGCTGGCATGAGCGGACGCGGCGAGAAGCAGCAGCCATCCGGGAAGAAGCGCAGCTGAGAGAAGCTGACCCGTCCAGTGATGGAGGAGGGCGCCACGAATTCGCGCTCCAAGGGGCATGACGATCTAGCGCTCCTTCGACGCATCGATCTCGCGGATCGCGGCGCCTTCGACGGACCAGATCTTGTCACCGGCTCCGACGTAGATCGGCAGGCGGTTGAGCAGGGACAGGAAGACGTGAACCTCGAGCGGCTGGGAGGCGACAAGCACAGTGGTGAAGAGGGCGGCGGGCTGGCCGGACTGGCCGGCCTTGCGGCGGTCCATGTTCAGGCAGCCGCTGGATAGCTGTTCGCGTTTCTCGACGGTGCGGCCGTCGGCGGTGAGGTGGAAGCGATAGTGGCCGCCCATCGGCACGACGTCGACGTCGTTGGTGGCGGCCAGAAGCCAGACCAGCCAGCCGTCGCCGTCGGGATCATCCAGCACCACAGGGTTGAAACTGGCGGTGCAGCGCAGGGCGCCGATGTTGGCGAGGGCGGTGGCGCGGGCCAGGTAACGCGCGATCTGATCGTCCGGCAGGACGACGTCCTTGGACTTGACCGCCGGGCCGGGGCGGCCGGTCTTGTCGACGAGGATGTCGTAACCGGGCCGGGGCGCGGCCGGGTCGCCGCGCACGAAGCGGACGAGCTGGGCGTCGCCCTGCTCGACCACGATCCAGCCGATCAGGCCGTGGTCCGTCGCGCCGCCCAGGTGGGCCAGCAGCACGTCCGTGGCGCGCCAGGCGGCGCGGTCCTGGAAGAAGATGGAGGCGCCGATCGCGCCGGTCTGCTGAAGAGGCCAGGCCTCGACCTGGGGCGTCGGCGTGTCGGGGGCGGCCTGAACAGCGGAGGCGAGACCCAGCGACAGGGCGGCGAACAAGGAGACCAACGGCAGCCGCATGGCGATCCTCTGCGGGAGGGGCGTCCCGCGCGGCGGCAGGGACAGGGCGCGATCCGGACCAGGTCGCGCGCCGAGCGTAGCCGCAAACCGCGGTTCTTCAATCGGAGAGACCATGAAAGAGACCAAGACCGTCTCGGGCAACCCCGAGGCGCGCGCCGCCATGCATGAGATGATGGCCGCGTTCGAGGCGTTCAAAGGGGCCAATGACGCCCGGCTGGACGAGATCGAGAAGAAGGCGTCGGCCGATGCGCTGCTGGAGGAGAAGGTGGCGCGCATCGATCAGGCGGTGGCCAGCGCCCAGGCGCGGCTGGATCGCGTGTTGAGCGAGGGGCGCAGGCCGGGCCTGGATGGGGCGAGCCCCTCCACCGCTTCGCGGTCCCCCTCCCCATTCCATGGGGAGGAAAAGAGCGCGTGGGACGGCTATATGAAGTCGGGTCAGGCCCATGGTCTGGAGCTGAAGGCGGGGTTGTCGTCGGCGTCGAACTCGGCCGGCTATGTCGTGCCGCCGGAGACGGAGCGGGCCATCGAGCGGCGCCTGATGGCGGGCTCGCCGATGCGCGAGATCGCCACGGTGCGCACGGTGGGTTCGGGCGTGTTCCGCAAGCCGGTGTCGACGGCGGGGGTGACGGCGGGCTGGGTGGCCGAGACGGCGGCGCGGCCCGAGACGGACCCGGCGACCCTGGCGTTGCTGGAGTTCTCCTCGGCCGATCTCTACGCCTGTCCGGCGGCGACGCAGAGCCTGCTGGACGACGCCCTGATCGACCTGGACGAATGGCTGGCGGCCGAGGTCGAGGACGCCTTCGCTGCGCAGGAGACGGCGGCCTTCGTCAGCGGTGACGGGGTCAACAAGCCCAAGGGCTTCCTGGCCTACGCCACGGCGAGCGAGGGAACGCAGACCTGGGGCCAGATCGGCACGGTGGCGTCGGGGCGGGGGCGGCTTCGCCTCGACCAACTCGGCGGACAAGCTGATCGACCTGATCTATGCGCCGAAGGCCCAGTATCGCCCGAATGGGCGCTTCGTGATGAACCGCCGCACGGTCTCGGCCGTGAGGAAGTTCAAGGATGCGGACGGCAACTACATCTGGTCGCCGGCGACGCGGCCGGGTGAGACGGCGTCGCTGCTGGGCTATCCGGTCACCGAGATCGAGACCATGCCGGATGTGGCGGCCAACAGTCTGTCGATCGCGTTCGGGGACTTTGCGCGCGGCTATCTGATCGTGGATCGCGCGGGGGTGCGGGTGCTGCGCGACCCCTATTCGGCCAAGCCCTATGTGCTGTTCTACACGACCAAGCGCGTGGGCGGCGGGGTGCAGAACTTCGACGCGATCAAGCTGATGAAGTTCGCGGCGAGCTGATGGGCGCGGCCCCTCTCCCCTTGCGGGAGAGGGGGGGACCCGCCGCGTGAGCGGTGGGAGGATGAGGGGTTTCGCGGGCGGCAAGACCCCTCATCCGTCCGCCTTCGGCGGCCACCTTCTCCCGCAAGGGGAGAAGGAACAGAACAGACATGGAGATTTGAATGACCGCACCCGTGAGCCTCACGGAGGCGAAGCTGTTCCTGCGCGTCGAGCATGAGGCGGAGGACGGGCTGATCCAGACCCTGATCGACGCGGCCCGGGCGCGGGTGGAGGGGGAGGTGGGGTTGAGCCTGACCTCGACCTCGCCGGCGCCGCTGCGGCTGGCGGTGATGATGCTGGCGTTGCGCGCCTATGAGCGCGGCGAGGGCGAGATGTCGGCGGCGCCGGTCGAGGGGTGGATCGCGCCCTATCGCGTGGTGCGGCTGTGAGCGGCGCGATGAAGGTGGTGGCGTCGCTGGTGCGGCCGGTGGAGGCGCAGACGCCCTATGGCGGGCGGGTCGTCAGCTATGAGCCGGTCGGCTCGCTGTGGATGGCGCTGGGCGCGCGACGACGCCGCGAGCGGACGGAAGGCGGCGTGACGCGCGGGGTGGAGACGCTGAGCGCCACGGTGCGGGCCGATCCGCGGCTGGCCGAGAGGCTGGTGGTGCGCTTCGGCGGGGCCGACTGGGGCGTCGTGGGGATCGAGGCCGATCCCAAGGCGGCGGGGCGGGTGCGGCTGAACCTGGAGCGGGCGCGATGAAGGATCATGAAGGGGCGCTGGTGAAGGCGCTGATCGAGCATCTGCGCGGCGACGGGGCGTTGCAGGCGCTGTTGGGCGATCCGATGCGCGTCTGGGACGAGCCGCCGCAGGGGGCCGGGTTTCCGCATCTGGTGATCGGGCGGTGCGAGAGCCGGCCGCTGAACGCCGACGGGGGCGGGGTCGAGCATCGATTGACCCTGACCTGCGCCAGCCAGTTCAGGGGCTGGAGGAGGCGCGGGCGGTGGCGGCGGCGGTGCGCGCGCGGGTCGCCGATGCGCCGCTGGAGGCGGACGGAGTGAAGGCGGTCAGCCTGGGCGTGACGTTCACTGACGTGTTCCGCAGCGGGGACCTGAAGCGGGCCTGGGCGGTGATGCGGGTGCGGGCCGTGACGGAAGAGGTTTAGCGCAACGCCTCTCCCTCCCCTTCATGGGGAGGGTGGCTGAGCCCGCAGGGCGAAGCCGGGTGGGGAGGGCCAGCCGACGCGAGCGCGCCTGCATCACCTCGCCGCCCCCACACGGTCGCTATCGCGACCACCCTCCCCATGAAGGGGAGGGAGAGGGGCAGGCTTATTCTGGAAAACGAAACGAGGGACATCATGACGGCGCAACGGGGCAAGGACATCCTGCTCAAGATCGAGGGTGCAGGCGGCGCCTTCACGACGGTGGCGGGGCTGAGGGCGCGGACGATCTCGCTGAACGCCAGGACGGTGGACGCGACGGACGGGGACTCGGCCGGGCGCTGGCGCGAACTGCTGGCCGGGGCCGGGGTGAAGTCGGCGGCGGTGTCGGGGCAGGGGATCTTTCGCGACGCGGCGTCCGACGCCCTGATCCGCGAAGCCTTCTTCGAGCAGGCGGCCAGGACGTGGCGGCTGATCGTGCCGGACTTCGGCGTGCTGGAGGGGCCGTTCCTGGTGGCCGCGCTGGAATACGCCGGCGAGCACGAGGGCGAGGCGAGCTTTGCGCTGAGCCTGGCGAGCGCGGGCGAGGTGACGTTCGCGGCGGTGTGAGGGCGGCGTTTCTCCCTCCCCGTCCCGGGGAGGGTGGTCGCGCAGCGACCGGGTGGGGAGGGCCGGGTGATTGGAACGCGCGCTTGAATAGCCTGGCCGCCCCCACCCGGCCTCGCCTTTCAGGCTCAGCCACCCTCCCCGGGACGGGGAGGGAGAGGGGGTGATGATGTCGACCAACGGCGTGCGGGGCGAGGTCGCGGCGGTGCTGGCGGGGGCGGAGCGGAAGCTGTGCCTGACGCTGGGGGCGCTGGCCGAGATCGAGACGGGGCTGGGCGTCGCCGGGATGGCGGCGCTGGCCGAGCGGATGAAGGCGTTGTCGGCGCGGGATCTGCTGGTGGTGCTGGCGGCTCTGCTGCGCGGCGGAGGCGAGGCGGCGCTGGCGGACGGCTTGGCGAACGCGCCGGTTGATCCGCGCGAGGCGGCGGAGGCGGTGGCGAAGGCCTTTGCGGCGGCGGCGTGAGGATGCCGTGGGGAGAGATGATGCAGGCGGCGGCGCGGATGGGCGTGGGGCCGGAAGGCTTCTGGCGGCTGTCTCTGAAGGAGTGGCGGATGTTGACGGCGGGGCCGGTCCAGGCGGCGCCCTTGGCGCGCGGCGAGCTGGAGCGGATGCAGGCGATGTGGCCGGATTGA

Protein sequences of DBSCAN-SWA_1

>CP032707|1790377:1798176|1793153_1793630_-|AYG95203.1|DBSCAN-SWA
MPLGARIRGALLHHWTGQLLSAALLPGWLLLLAASAHASDVIAAIAKQMLVGITIVAGLLVVGLWLWSRDRASLLQEQIKAGARPVQNRDERSSSVWSLLGGAAFLAAGWQVLMDFNLFTPIFADLGFNLTSAWDTLLGLSAIQVVCFFAHNRWLNRP
>CP032707|1790377:1798176|1797709_1798006_+|AYG95209.1|DBSCAN-SWA
MMSTNGVRGEVAAVLAGAERKLCLTLGALAEIETGLGVAGMAALAERMKALSARDLLVVLAALLRGGGEAALADGLANAPVDPREAAEAVAKAFAAAA
>CP032707|1790377:1798176|1792546_1793185_-|AYG95202.1|DBSCAN-SWA
MRTIAGSTAPEPRLGQHGEVAEGQPAPEVTNNDHRSIVRPNLTVRPPVTASKSRSALTAMGLLAVPAQGRPRPQRPAAAGRGHRQLPHPSGASRASIGDQIQTIIADPSVTVDLLDTGVVAAPASPLRDDVVSAVTAAVHARYPGLTVTPSMAAGATDSMHFRAQGVPSYGVSTIFMKPEDDVSHGLNERLPLDTIAPGIAQWEAVLRTMAD
>CP032707|1790377:1798176|1796237_1796540_+|AYG95207.1|head,tail|DBSCAN-SWA
MKVVASLVRPVEAQTPYGGRVVSYEPVGSLWMALGARRRRERTEGGVTRGVETLSATVRADPRLAERLVVRFGGADWGVVGIEADPKAAGRVRLNLERAR
>CP032707|1790377:1798176|1795962_1796229_+|AYG95206.1|head,tail|DBSCAN-SWA
MTAPVSLTEAKLFLRVEHEAEDGLIQTLIDAARARVEGEVGLSLTSTSPAPLRLAVMMLALRAYERGEGEMSAAPVEGWIAPYRVVRL
>CP032707|1790377:1798176|1791724_1791949_+|AYG96350.1|DBSCAN-SWA
MTELRKIPVALVAALLVQTLGGLVWAGGAAARIATLEQRVGEQRLVAERLARLEAQGEATRAAVERIERRLEEK
>CP032707|1790377:1798176|1793636_1794272_-|AYG95204.1|DBSCAN-SWA
MLLAHLGGATDHGLIGWIVVEQGDAQLVRFVRGDPAAPRPGYDILVDKTGRPGPAVKSKDVVLPDDQIARYLARATALANIGALRCTASFNPVVLDDPDGDGWLVWLLAATNDVDVVPMGGHYRFHLTADGRTVEKREQLSSGCLNMDRRKAGQSGQPAALFTTVLVASQPLEVHVFLSLLNRLPIYVGAGDKIWSVEGAAIREIDASKER
>CP032707|1790377:1798176|1797135_1797546_+|AYG95208.1|tail|DBSCAN-SWA
MTAQRGKDILLKIEGAGGAFTTVAGLRARTISLNARTVDATDGDSAGRWRELLAGAGVKSAAVSGQGIFRDAASDALIREAFFEQAARTWRLIVPDFGVLEGPFLVAALEYAGEHEGEASFALSLASAGEVTFAAV
>CP032707|1790377:1798176|1790377_1791556_+|AYG95201.1|portal|DBSCAN-SWA
MENHMDWRRPFGRRRVAAPEIKDSRAGPLIALTGAGRARWTPRDYAHLAEEGFARNAVAYRCVRMIAEAAASTPLMVMVGGVRTAEHPLARLLAKPNPEQSGGELMEAIYGALQTAGNAYVEASGDADGDGAPDELWALRPDRVKVVPGRAGWPEAYEYAVGGQAVRIARHGDGWSPVMHLKLFHPTDDHYGFSPLEAAAFAIDVHNASGAWNKALLDNAARPSGALVYGAKDGERLTADQFEALKAELGEAHAGARNAGRPLLLEGGLDWKPMSLTPHDMDFIAGKHAAAREIALAFGVPPQLLGIPGDATYANYREANAAFWRATVIPLVRKAAGAMTGWLGGRFSDCRIEPDLDAVPALQVERDALWARLNAAGFLTDEERRRMAGVGE
>CP032707|1790377:1798176|1792101_1792521_+|AYG96351.1|head,protease|DBSCAN-SWA
MHGYASLWGVADLNGDVVARGAFAESLARTGAGGVRMLHQHESRAVVGVWDEMVEDERGLWVEGRIEDWSAEARYAAALTRAGALDGLSIGFRAAKARRERRLRVLSAVELWEVSLVTFPMLPGARFRSVASGRAAAEP
>CP032707|1790377:1798176|1794229_1794532_-|AYG95205.1|DBSCAN-SWA
MRLRSARDLVRIAPCPCRRAGRPSRRGSPCGCRWSPCSPPCRWVSPPLFRPPPTRRRPRSRPGLFSRPARSAPPSSSRTAPPGAPRTCCWPTWAARRTTA
>CP032707|1790377:1798176|1798008_1798176_+|AYG95210.1|tail|DBSCAN-SWA
MPWGEMMQAAARMGVGPEGFWRLSLKEWRMLTAGPVQAAPLARGELERMQAMWPD

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYG95201.1|1790377_1791556_+|portal	phage portal protein	W8ECU7	Geobacillus_phage	3.4e-66	40.9
AYG96350.1|1791724_1791949_+	hypothetical protein	NA	NA	NA	NA
AYG96351.1|1792101_1792521_+|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.7e-21	46.2
AYG95202.1|1792546_1793185_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
AYG95203.1|1793153_1793630_-	hypothetical protein	NA	NA	NA	NA
AYG95204.1|1793636_1794272_-	hypothetical protein	NA	NA	NA	NA
AYG95205.1|1794229_1794532_-	hypothetical protein	NA	NA	NA	NA
AYG95206.1|1795962_1796229_+|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
AYG95207.1|1796237_1796540_+|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AYG95208.1|1797135_1797546_+|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	1.9e-16	39.4
AYG95209.1|1797709_1798006_+	gene transfer agent family protein	NA	NA	NA	NA
AYG95210.1|1798008_1798176_+|tail	phage tail assembly chaperone	NA	NA	NA	NA