CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024674	Citrobacter freundii strain UMH19 plasmid pUMH19, complete sequence	0 crisprs	DEDDh,csa3	0	0	1	0
CP024673	Citrobacter freundii strain UMH19 chromosome, complete genome	1 crisprs	WYL,RT,DinG,cas3,csa3,DEDDh,PD-DExK	0	1	12	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8175 : 24747

Enterobacteria_phage(36.36%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL73942.1\|8175_8943_-	DUF1883 domain-containing protein	S6BFN8	Thermus_phage	9.8e-30	46.4
AYL73943.1\|9111_9726_+	hypothetical protein	NA	NA	NA	NA
AYL73944.1\|9766_10474_-	hypothetical protein	NA	NA	NA	NA
AYL73945.1\|10501_11068_-	resolvase/recombinase	Q1MVP4	Enterobacteria_phage	3.5e-77	82.6
AYL73946.1\|11231_14240_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.5
AYL73947.1\|14810_15233_+	peptidase	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
AYL73948.1\|15232_16504_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.7e-157	64.2
AYL73949.1\|16649_17621_-	chromosome partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	9.6e-115	68.9
AYL73950.1\|17617_18823_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
AYL73951.1\|19430_21257_+	OLD family endonuclease	E5E3R2	Burkholderia_phage	1.5e-12	23.2
AYL73952.1\|21428_21779_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	2.4e-20	55.2
AYL73953.1\|21927_22359_-	copper-binding protein	NA	NA	NA	NA
AYL73954.1\|22595_24074_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	1.8e-27	31.0
AYL73955.1\|24066_24747_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.9e-32	36.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP024673

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CRISPR-Cas detection and classification

Crispr_ID: CP024673_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024673_1

1510422-1510545

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024673_1

>merge|CP024673|1|1510422-1510545|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP024673|1|1|1510422-1510545|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP024673.1\|AYL70584.1\|1503408_1505541_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
CP024673.1\|AYL70596.1\|1518258_1518963_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185203
CP024673.1\|AYL70588.1\|1508762_1509515_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
CP024673.1\|AYL70590.1\|1510614_1510797_+\|hypothetical-protein	unknown	unknown	unknown
CP024673.1\|AYL70589.1\|1509501_1510224_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270259
CP024673.1\|AYL70583.1\|1501932_1503195_+\|4-aminobutyrate-transaminase	unknown	unknown	gnl\|CDD\|182078
CP024673.1\|AYL70587.1\|1507761_1508766_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP024673.1\|AYL70586.1\|1506719_1507775_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238562
CP024673.1\|AYL70593.1\|1514370_1514922_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185201
CP024673.1\|AYL70581.1\|1499098_1500307_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|379187
CP024673.1\|AYL70592.1\|1512530_1513511_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
CP024673.1\|AYL70598.1\|1520092_1520344_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184255
CP024673.1\|AYL70595.1\|1517454_1518159_-\|fimbrial-chaperone-protein	unknown	unknown	gnl\|CDD\|236632
CP024673.1\|AYL70585.1\|1505550_1506561_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
CP024673.1\|AYL70582.1\|1500350_1501826_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP024673.1\|AYL73792.1\|1513583_1514225_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185203
CP024673.1\|AYL70580.1\|1497202_1499095_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|379192
CP024673.1\|AYL70594.1\|1514918_1517333_-\|fimbrial-assembly-protein	unknown	unknown	gnl\|CDD\|237937
CP024673.1\|AYL70597.1\|1519188_1519494_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP024673.1\|AYL70591.1\|1511441_1512452_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135

Protein	Function_ID	Function_description	E-value
CP024673.1\|AYL70584.1\|1503408_1505541_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	5.1769e-69
CP024673.1\|AYL70596.1\|1518258_1518963_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	2.42916e-31
CP024673.1\|AYL70588.1\|1508762_1509515_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.72225e-79
CP024673.1\|AYL70591.1\|1511441_1512452_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	7.49337e-175
CP024673.1\|AYL70589.1\|1509501_1510224_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270259	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.01365e-87
CP024673.1\|AYL70583.1\|1501932_1503195_+\|4-aminobutyrate-transaminase	gnl\|CDD\|182078	PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.	0
CP024673.1\|AYL70587.1\|1507761_1508766_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.61593e-82
CP024673.1\|AYL70586.1\|1506719_1507775_+\|hypothetical-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	3.99191e-82
CP024673.1\|AYL70593.1\|1514370_1514922_-\|hypothetical-protein	gnl\|CDD\|185201	PRK15301, PRK15301, hypothetical protein; Provisional.	7.02628e-08
CP024673.1\|AYL70581.1\|1499098_1500307_+\|alcohol-dehydrogenase	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.55159e-10
CP024673.1\|AYL70592.1\|1512530_1513511_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.93083e-79
CP024673.1\|AYL70598.1\|1520092_1520344_+\|hypothetical-protein	gnl\|CDD\|184255	PRK13699, PRK13699, putative methylase; Provisional.	5.3693e-14
CP024673.1\|AYL70595.1\|1517454_1518159_-\|fimbrial-chaperone-protein	gnl\|CDD\|236632	PRK09918, PRK09918, putative fimbrial chaperone protein; Provisional.	2.00496e-97
CP024673.1\|AYL70585.1\|1505550_1506561_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	2.41697e-69
CP024673.1\|AYL70582.1\|1500350_1501826_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.46281e-137
CP024673.1\|AYL73792.1\|1513583_1514225_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	1.76312e-20
CP024673.1\|AYL70580.1\|1497202_1499095_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|379192	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.	6.41572e-06
CP024673.1\|AYL70594.1\|1514918_1517333_-\|fimbrial-assembly-protein	gnl\|CDD\|237937	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional.	0
CP024673.1\|AYL70597.1\|1519188_1519494_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.34689e-10

>CP024673.1|AYL70589.1|1509501_1510224_-|molybdate-ABC-transporter-substrate-binding-protein
MPSSILLFAAGSLRPACTPLISQFTHMSGIDVKIEYGPAGLLRERIEAGEPCALFASANREHPQNLLVRNKAVSTHTFCWNKLSLVSNRIGTWLDLLRDPTLRPGTSTPGCDPSGDYTWAFFDNMDVLEPGLGQQLRARAIPLVGGRDTVKIPQGELASAWVLRQGLADLFIGYAHYAHALHAMTDVHYVAIPDEHNIFCEYQLAVIDASKEVMALVEFILSRSGQAFLTAAGFLPLNAE
>CP024673.1|AYL70588.1|1508762_1509515_+|ABC-transporter-ATP-binding-protein
MIPAALRVNQLSYGYRAPLFEPLTFCCQKGDIWAVLGRNGLGKSTLLDTLTGTLPALGGSIENNGGIGIVAQHSHLPFPYTVSDVVLMGRAQHVKLFAQPSQQDQQRAMQALEQLSIAHLASSSFGSLSGGQQQLVMIARALVTECQTLLLDEPCSALDLANQQVVLQLISDLAHQQRCSILFSTHDPLHALQVASHTLLLLPKGKWRAGPTDSIVTEENLFLAYGLPLRKLSVENHPTPFIAPLFSIRR
>CP024673.1|AYL70587.1|1507761_1508766_+|iron-ABC-transporter-permease
MQLSNRFLPQQPLLIVVVLLLGVSSLCLGQYPLSLSEVFYHLTHYSDAEEIASQVIWTVRLPRILMALLAGGALGLCGTTLQGVFHNPLVDPHIIGVTSGAAFGGTLAILLGLSPLLMMGSTFFFGLTALILVYAIAALQGLENTLVLILSGIILSGFFAALVSLIQYQADTEETLPNIVFWLLGSFATANWHKVLLLAVPVGIAATVLFQLRWRINLLSLNDKDARALGVAVVPLRRSVLVCCAFLVAAQVAVSGSIAWVGLVIPHLARLLVGVDHRRLLPCAFWLGGGFMIVVDDIARTLMHAEIPLGIITALFGAPLFAFLLIRTSRREKS
>CP024673.1|AYL70586.1|1506719_1507775_+|hypothetical-protein
MLTFRSFVLVCASMLFAFSAQADRTITDQLGRQVTIPDHVDKVVVLQHQTLNILVQLNAQQDIVGVMSSWKKQLGPEFARFMPTITTLPTPGDLTSVNIESLLAIHPQVVFVANYAPAEMIQQIQNAGIPVVAISLRKDADGQQNKMNPTMADEEQVYNEGLKQGIRLIADVVGRKPQAETLIDYVFAARAKFNAPVANIPDAQKVRIYMANPDLMTYGSGKYTGLMMQHAGGLNVAAASVKGARQVALEQVLAWNPQVIFVQDRYPQVVTQIQNDPNWQGIDAVKNHRVWLMPEYAKAWGYPMPEALAIGELWMAKKLYPDAYKDVDVDAQAQDYYQRFYRVNWQSDAAK
>CP024673.1|AYL70585.1|1505550_1506561_+|ABC-transporter-substrate-binding-protein
MKTCHTWLLCVWLAFPALATRQVVDDAGHTVTVPTHVERIADGWFAHHSVLMTLGAGRNIVVTVNHEDNQPWMFKINPSLRQALQIRGTSFNTEDLLARHVDVVFVAKGKGDAQSYSQAGIPALEMAFTDYASMEKSVTTTAKVLGTGQARARATAYNQYLNRVLADVQAKTAGLSADQRPRVLHIQSLNPLKVDGRNTLIDTWITLTGGRNAAGEVDGNMKEVSPERVLYWQPQVIILGAGCGDIASSPYAALFKELDAVKQGNVWRNPAGVFPWDRYGTESALQLQWAASKLHPTLFSGLDMVSVTRDFYRQFFDYSLTPAQAMRILNALPPQE
>CP024673.1|AYL70584.1|1503408_1505541_+|TonB-dependent-siderophore-receptor
MLNNKITPVASGLLTFACLSTVVTAHAEDTVIVSAPATSQSSLSEHEPPASEKKATLGSLGERELIDVPWSVQTLSKKVLDQQQIKDVKDAYRYLPSVQGDGVRPQTRGMQGSVVQNHMIDGLNAVSTTEYSTEQFQNIEVLSGIAGSLYGPANPAGMFNLVSKRPVDTPLHRVTVGQGTGSGTLTSMDFSGPIDAGDRVKYRLNLLNDEGHSYTTDSHVRRQYAGLGLDFQLTDQTVLESNFSYYHYYEKGMPGSFALAKGVHFPAAFDPTDSKYGQSYAGHDDETTTVDMHIKHDFDGNWMLDLGALHQVADRESTAVTNTLTNNQGDYTTTTANSAASRFTINSYLANLTGSVDTGWLTQDIATGMRGFVWKNYNPRNGGTFTLGHSSLNQHPDYPRPPYPDFNDRYHSATTTQHAFLLSDTLHFSPQWSLLLSGSENLFTVSNYNKAGHESSRQKDNGMSGSTSLMYKPVENITLYTTWADSLQQGDTAPAGARNAGQVLDPYRSRQIEVGAKYAPVKDLLLTAALFEAKRPFAYTNDNGDFAQDGTQKNRGLELMADGHITHNLRVLGGGAWLDPTLHNTAASNADGKQVVGLPRFASNILAIYTIERVPGLDVDTNVHYVGRRATDNANDSWVGSYTTVDIGTRYATRLWNTPTTFRFDITNLTDRHYWTNIVPGALTGYTGAGAASAQLGAPRQAQVSVQVDF
>CP024673.1|AYL70583.1|1501932_1503195_+|4-aminobutyrate-transaminase
MNNKNLQQRRLDATPRGVGVMCDFYAQSAENSTITDIEGNQYIDFAAGIAVLNTGHRHPRLVQAVEAQLQAFTHTAYQIVPYESYVSLAEKINNVAPIDGKRKTTFFTTGAEAVENAVKIARAHTGRPGVIAFGGGFHGRTYMTMALTGKVAPYKKGFGPFPGSVYHAPYPSELQGISTADSLKAIERLFKADIDPTQVAAIIFEPVQGEGGFVVAPPEFVAAIRRICDEHGIVMIADEVQSGFARTGQLFAMDHYADKADLMTMAKSLAGGMPLSGVVGKAEIMDAPAPGGLGGTYAGNPLSIAAAHAVLDIIHDEQLCQRAAALGEQLRAALTDAQAGCPELAEVRGLGSMIAAEFCDPATGEPNASAAQRVQKKALEQGLLLLTCGQYGNVIRFLYPLTIPQDQFAKALQIIKAATK
>CP024673.1|AYL70582.1|1500350_1501826_-|PLP-dependent-aminotransferase-family-protein
MRSLAGDVIKQAFSQQTDEKLHRRLYAAICSCILEGSLKPATRMPPSRDLAGELTLSRNTVLRVYEQLQAEGYISARTSSGTFVTDSVLDNLNLRPNKEPVAAALEDHTRLSARCLELLGNASASPRQWGAFIPGVPDVEHFPHRVLKKIQDRLARRLRPEFLTYDAAGGVNELKEALADYLRTARGVRCSPEQILITEGIHQALDLVTRTLCNPGDYAWIEEPGYWGIKNILRINAVNFSAIPVDEQGMIPPDSGETPPKLIFVTPSHQYPLGSVMSLSRRRQLIFRARETRSWIVEDDYDSEFRFSGQPIPSLQGLEEETPVIYIGTFSKTLYPALRLGYVVLPKSLAAPLKKVHNDLYRGGHLLIQAALAEFIREGYYAAHIRKMRQLYSRRRQMLVELISRQLGEHYLGSFSSNAGLHMILQLPAGSDDAVIAQQANAQGLLVRPLSRYYVNEEKRSGLLLGFASIEEHEMAAAFTRLADIIRANTV
>CP024673.1|AYL70581.1|1499098_1500307_+|alcohol-dehydrogenase
MRNVTILAACLFTASVSAAESNGEYIARISDCVACHTAEGGAAMAGGKKFPTPVGDIYSTNITPDKAQGIGNYSYEDFEKAVRQGIAKDGHPLYPAMPYPSYAKLSDEDVQALYRYFMHDVTPSAQPNKENAIPWLLSARWPLHIWNWLFTDAPATTVDSAKPDDNAALVKRGAYLVEGPGHCGSCHTPRGMAMNEKAYTHADAEYLSGAMIDGWYAPSLRGSGMSEQALKSLLLTGKSKHAAVSGSMAEVVTQSTQYLTDEDATAIAQYLLSLKSAKPETVRAAATTASWSNSPEAGKVTYNRYCSTCHGLEGKGTDDNAPSLVNNPLVMVDDPTPLFRVIAHGAETPTTRGSVSFKMPAYGGMLSDNEMRDVINYVRKTWGEGNGEVSHEDLAGIKKASH
>CP024673.1|AYL70580.1|1497202_1499095_+|NAD(P)/FAD-dependent-oxidoreductase
MAITRRDFLNGVAVTIAAGLTPLEWVRATGKGNAFIDGNYYPPALTGLRGNHPGSFEMAHALGREQKHFELNALPVEEEYDLVIVGGGISGLAAGCFWRQVAGQNSRILILDNHDDFGGHAKRNEFTSSGKKLLGYGGSEAFQSPAHNFSPEVQKLMETVGVSVTRLKESFDVNFYPDWQLSRGVFFDKKNFGVTKIVSGDPGRAVSDDIPPDRLNGRKIEDFINDFPLGENDRKALIDLHVRPGDYLPGMTVDEKMEWLDTHSYSEFLATKVGLSKMALLYFQQRSNDFFAIGIEGISCSDARACALPGMEGMGLPPLDGESLADLEEPYVYHFPDGNAGLARLLVRYMLPDALPGNTMEDSVLARLHYEKLDLPENTTRLRLNSTVINAANVQDGVVVTYLRDGKMHRVRGKNTIMAGYNMMIPYLVPEMPEQQQADLKLNVKAPLVYTNVVVKNWQAFKQLGVHEFYSPAAPYSRVKLDYPVSIGGYQHPASPDDPMVIHMVYVPTYPGSNLSAREQFRLGRAYLLGTTFAAHEEMIRSQLQEMFGSTGFDNQRDISAITVNRWAHGYAYYANSLFDDMDKMPEIIERARQPVGRIAIANSDSDWSAYAHTAIDQAWRAVNELKDMG
>CP024673.1|AYL70590.1|1510614_1510797_+|hypothetical-protein
MAFFFLISRDCRVIKQVDYILLILQRVFYSCSRQGHNGNGLNDMSTQSFSVARIVASIFS
>CP024673.1|AYL70591.1|1511441_1512452_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MVKVGINGFGRIGRNVLRAALGNSDIQIVAINDLTDSKTLAHLLKYDSLLGKLDADVAASEGQLVVNGNSITVFSERDPAKIPWRQREVDIVIEATGFFTERDKAAVHIHSGGAKRVIISAPGKNDDLTIVMGVNDHLYSADKHFVVSNGSCTTNGLAPAAQVLHQHFGIKHGLMNTTHAYTNSQALHDQPEKDLRGARAAALSIVPYSSGAAKALGKVIPELDGRLTGYSLRVPVPVVSIVDLTVTLERDVTEEEVNNAFRNAAATGPLKGILGYSDEPLVSSDYQGDPRSSIIDGLSTLVIGGNMVKILAWYDNEWGFSNRLVDLALLMAKNER
>CP024673.1|AYL70592.1|1512530_1513511_-|AraC-family-transcriptional-regulator
MKKILIIVPDGGMLFESAGIADIMMQANRLHPKSATETCYQVQLATTQPHQVIHGQSGLNLLADHRLHEIDPREPLDTIIITGRGQNPQEGIAVVDWLRLAAPHARRIASICGGAMLLAQTGLLDGRRATTHWKLLETMQAEFPQVRVESGPLYIQDEHIWTSGGVSSGFDLTLALVEEDYGFSLARDVAQDFVMYLRRPGGQLQFSRYNLQHTSTLGPINDLLVWLLENLTADLSVDKLAEKVAMSPRNFTRVFTRETGASPARYVAEARLAAARQRLEQTNETLERIAEQTGFGSSINLRRLFEKQLHLTPGEYRQRFHCRKMA
>CP024673.1|AYL73792.1|1513583_1514225_-|DUF1120-domain-containing-protein
MITKAYAENTVDVSFSAEMIPAACRVSLDNGGTVDYGTLSLSSIRSSSPYLLTPRVIGLHIQCESLRQVAWMVNDEKAETRVRNLIIDSHDDKTSGRHSSDTLFGLGVTSGQKPIGGYLITALAGESAVEGDIASWGYQTGEQERSMWQSAGTALTLISGIMRLTPVDAKNNPVAIRQLTIPLRISAAIASDGLSLQDETKLQGEATISLIYL
>CP024673.1|AYL70593.1|1514370_1514922_-|hypothetical-protein
MIRLISLCCGIGFIVSPVVQAQCNIIASQLHHEYGKVRFQDTEPTGQVQWQQLPARQVQVQVRCDVPQPIHIRFDDNNRRGLDFSFGEEGRATVMFSEAFVDNKSSQFVVHHELNKSSELRSQTPVAVLNGDTVELQQHHQPVNGMSATFLLTVIPRVQARSFQVSDQQASTLSLRMTVPERE
>CP024673.1|AYL70594.1|1514918_1517333_-|fimbrial-assembly-protein
MPFNLIRTLPVHRYAYYLFLGLLGSYSMMLSAEPLLFDDGRLKNRGLDAGLSHYFSHAARFSPGEYPVSWVINGRNKRQLMTRFNAQGEPCITPETSRNLGLAYEFNQGCLDYQTLYPAAQLTADPYKNQISITVPTSALTPESILLRKDIIQGGTSGLLNYNLQSSTTVQSGKHETYQLGLFESGLNLNDWLLRSRHTVSYSDGTRRSQRLYTYVQKTFQSLQQTFQAGEIYARQTLLAIPGLTGLQLFPDSALRPARSGVSVQGIARSAQARVEVYQNGQLIEATQVPEGPFSLDNISMLSTQFPLDVKVTEQDGQLTTFSVPVTALQTPADAPLYGSVALGKVRETVASDESAPWLITGSQGMRISRQATLSGSALASAQYQSAAASLSFIPIPAWSLSLQTTMAQEQYTHHAGSKESLSLRYQLNPSASIQAAWTTTSAGFRELSDAVNHTTSTANSYYNVGGNWAHEHLGLFSLSYSTSSARDHAATPKSWYASWSKNWRWAGHGQINLSATWQRVSGSRTSTQRDDDVFYIRLGLPLGHDRVNLSLRRQGSRTYNDVQTSGQWDDMSYSLSAGRDWQNAQNTISGSFGQNLHYAQMSGYASQTANYWGYGGSLSGGISVNQEGILFSPYAIQESYGALSLNSPLSGIKVSTPQGPVWTDYRGKALVPGLTPWQPSRLNIDVKTLPRHVDLTNGAAELTVSRGAVAFTQFRISDTRRVLMTVRRTDGKLLSKGKGIVDSDGQYVTNSLEKGLVFFSNLQPGESFFVGDDNGSPMCQLQYSLPPTPPQDGLYEELTGVCE
>CP024673.1|AYL70595.1|1517454_1518159_-|fimbrial-chaperone-protein
MRQPFFFWKVLFILSLFLICVPQVSMATGMQPGSSLLLIQEKESGGSMNVTNTDNIPSLLYTQVINVDGEDDTIKLLPTQPVVRVEGGKTQQVRFILKTEKPLITEHLKRVIFEGIPPKIPGSNKIGITIRQNLPVLIHPEGLPERKDPWTLLTWHKEGNQLKVTNPGPYVVRLAQQFVTLPSKTQFDLGRTYLLPGQHITLSSASSLTADNEVRFVPVSRYGVQVSEFIASLN
>CP024673.1|AYL70596.1|1518258_1518963_-|DUF1120-domain-containing-protein
MKLNKLLVALSLTFISSSVLAAGGDTATLKVTGKLVPGACAVNLDNAGIVDYGTMLMTNLSATEDNQLPEKRINMGIKCNSERLVAYTLHDERRDSLYNGVIKNATVDGSDIPASSNQFGLGLTNDGETTLGAYTVINWFPDMTYSGSTDNLVFISKKITSDDWSRTASGSTVNGVDVAARLHTLGNPDTLTPAAFSELKVPLSIKGVLRKGEDLKITDETNLDGEATISLVYL
>CP024673.1|AYL70597.1|1519188_1519494_-|XRE-family-transcriptional-regulator
MHLKYNISNVNARIGRFVRSNRQRMNMSAEELAVELNICQQHVSRFERGQCAFTLEFILRILNVFNIRLSHLVSEVFYEDSQVFSKARNIIQNNSMTKTIN
>CP024673.1|AYL70598.1|1520092_1520344_+|hypothetical-protein
MRKDIHCWLQCTAPEWTQDGLLFRFFPDRAVDFIPHRFPAVGRSPWPFRHSIAGDKSDEWLQPTCNEMKCVLKTDALMNALRT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024673_1	1.1\|1510465\|38\|CP024673\|CRISPRCasFinder	1510465-1510502	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	3	0.921

1. spacer 1.1|1510465|38|CP024673|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.921

cggacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******..****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

332965 : 379504

Escherichia_phage(18.18%)

holin,transposase,integrase,capsid

attL 330098:330135|attR 375052:375089

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
330098:330135	attL	NA	NA	NA	NA
AYL69514.1\|332965_333946_+\|transposase	IS5/IS1182 family transposase	A0A077SK28	Escherichia_phage	9.8e-184	98.5
AYL73741.1\|333984_334104_-	ABC transporter	NA	NA	NA	NA
AYL69515.1\|334305_336309_+\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	2.6e-21	26.2
AYL69516.1\|336373_337651_+	DUF2254 domain-containing protein	NA	NA	NA	NA
AYL69517.1\|337926_338277_+	morphinone reductase	NA	NA	NA	NA
AYL69518.1\|339375_339816_-	hypothetical protein	NA	NA	NA	NA
AYL69519.1\|339805_340051_-	hypothetical protein	NA	NA	NA	NA
AYL69520.1\|340091_340793_-	transcriptional regulator	NA	NA	NA	NA
AYL69521.1\|341009_341831_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.8e-45	38.3
AYL69522.1\|341922_342786_-	hypothetical protein	NA	NA	NA	NA
AYL69523.1\|343227_344133_+	WYL domain-containing protein	NA	NA	NA	NA
AYL69524.1\|345277_345646_+	hypothetical protein	Q716C1	Shigella_phage	1.9e-39	98.9
AYL69525.1\|345602_346754_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.9e-43	35.6
AYL69526.1\|347121_347553_-	hypothetical protein	NA	NA	NA	NA
AYL69527.1\|347846_349370_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.1e-44	32.0
AYL69528.1\|349803_350808_-	transcriptional regulator	NA	NA	NA	NA
AYL69529.1\|350837_352238_-	glycosyl hydrolase family 32	F8WPR5	Bacillus_phage	2.0e-20	26.1
AYL69530.1\|352237_353608_-	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA
AYL69531.1\|353745_355263_-	porin	NA	NA	NA	NA
AYL69532.1\|355428_356352_-	aminoimidazole riboside kinase	NA	NA	NA	NA
AYL69533.1\|356580_356751_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYL69534.1\|356750_356933_-	hypothetical protein	NA	NA	NA	NA
AYL69535.1\|357260_357569_+	maltose acetyltransferase	NA	NA	NA	NA
AYL69536.1\|357597_358254_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	6.2e-09	82.1
AYL69537.1\|358309_358930_-	inovirus Gp2 family protein	NA	NA	NA	NA
AYL69538.1\|359132_359309_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AYL69539.1\|359391_360156_-	hypothetical protein	NA	NA	NA	NA
AYL69540.1\|360290_360512_-	DNA-binding protein	NA	NA	NA	NA
AYL69541.1\|360508_360823_-	hypothetical protein	NA	NA	NA	NA
AYL69542.1\|361080_362388_-	preprotein translocase	A0A221SAN4	Ralstonia_phage	3.1e-07	29.1
AYL69543.1\|363202_363595_+	hypothetical protein	NA	NA	NA	NA
AYL69544.1\|365728_366157_+	hypothetical protein	NA	NA	NA	NA
AYL69545.1\|366287_366470_+	hypothetical protein	NA	NA	NA	NA
AYL69546.1\|366450_367512_+	hypothetical protein	NA	NA	NA	NA
AYL69547.1\|367527_368013_+	hypothetical protein	NA	NA	NA	NA
AYL69548.1\|368275_368671_+	hypothetical protein	NA	NA	NA	NA
AYL69549.1\|368719_370882_+	chemotaxis protein	A0A076G6U4	Escherichia_phage	2.3e-07	73.8
AYL69550.1\|371449_371791_+	hypothetical protein	NA	NA	NA	NA
AYL69551.1\|371806_372841_+\|capsid	phage capsid protein	NA	NA	NA	NA
AYL69552.1\|372973_373183_+	hypothetical protein	NA	NA	NA	NA
AYL73742.1\|373412_373613_+	glycogen synthesis protein GlgS	NA	NA	NA	NA
AYL69553.1\|373733_374936_-\|integrase	integrase	NA	NA	NA	NA
AYL69554.1\|376544_377369_-	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	2.0e-44	39.1
375052:375089	attR	NA	NA	NA	NA
AYL73743.1\|377556_377901_+	hypothetical protein	NA	NA	NA	NA
AYL69555.1\|377963_378242_+	hypothetical protein	NA	NA	NA	NA
AYL69556.1\|378472_379504_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

933191 : 980669

Salmonella_phage(70.37%)

plate,terminase,tail,transposase,portal,integrase

attL 948410:948426|attR 974707:974723

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL70055.1\|933191_934121_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	3.2e-67	49.8
AYL70056.1\|934169_934919_-	molybdopterin-synthase adenylyltransferase MoeB	A0A1V0SCZ9	Indivirus	1.8e-12	29.3
AYL70057.1\|934918_936154_-	molybdopterin molybdotransferase	NA	NA	NA	NA
AYL70058.1\|936329_936692_+	aminoglycoside resistance protein	NA	NA	NA	NA
AYL70059.1\|936883_937849_+	beta-aspartyl-peptidase	NA	NA	NA	NA
AYL70060.1\|937835_939707_+	glutathione ABC transporter ATP-binding protein GsiA	G9BWD6	Planktothrix_phage	3.7e-14	27.2
AYL70061.1\|939735_941274_+	glutathione ABC transporter substrate-binding protein GsiB	NA	NA	NA	NA
AYL70062.1\|941320_942241_+	glutathione ABC transporter permease GsiC	NA	NA	NA	NA
AYL70063.1\|942243_943155_+	glutathione ABC transporter permease GsiD	NA	NA	NA	NA
AYL70064.1\|943212_944538_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
AYL70065.1\|944767_945151_+	transcriptional regulator	NA	NA	NA	NA
AYL70066.1\|945253_946351_+	oxidoreductase	NA	NA	NA	NA
AYL70067.1\|946356_946983_-	glutathione S-transferase family protein	NA	NA	NA	NA
AYL73764.1\|947311_948514_+	serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	5.0e-97	47.1
948410:948426	attL	NA	NA	NA	NA
AYL70068.1\|948559_949318_-	DNA-binding transcriptional repressor DeoR	A0A077SK06	Escherichia_phage	3.9e-15	28.8
AYL73765.1\|949382_949991_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
AYL70069.1\|950289_951522_+	multidrug transporter MdfA	NA	NA	NA	NA
AYL70070.1\|951549_951831_-	hypothetical protein	NA	NA	NA	NA
AYL70071.1\|951938_952754_-	HAD family hydrolase	NA	NA	NA	NA
AYL70072.1\|952753_953962_-	MFS transporter	NA	NA	NA	NA
AYL70073.1\|954047_954596_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
AYL70074.1\|954601_955516_-	LysR family transcriptional regulator	NA	NA	NA	NA
AYL70075.1\|955618_956533_+	EamA/RhaT family transporter	NA	NA	NA	NA
AYL70076.1\|956545_957343_-	short-chain dehydrogenase	NA	NA	NA	NA
AYL70077.1\|957498_958710_-	Bcr/CflA family drug resistance efflux transporter	S4TR35	Salmonella_phage	2.8e-188	89.4
AYL70078.1\|958876_959089_+	hypothetical protein	NA	NA	NA	NA
AYL70079.1\|959155_960208_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	4.7e-107	57.0
AYL70080.1\|960280_962269_-	hypothetical protein	NA	NA	NA	NA
AYL70081.1\|962291_962882_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	6.8e-39	39.8
AYL70082.1\|962977_963199_+	regulator	NA	NA	NA	NA
AYL70083.1\|963231_963735_+	hypothetical protein	A0A1S6L008	Salmonella_phage	1.4e-69	82.2
AYL70084.1\|963747_963978_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	8.2e-25	89.3
AYL70085.1\|964125_964374_-	hypothetical protein	NA	NA	NA	NA
AYL70086.1\|964453_964795_+	hypothetical protein	E5G6L5	Salmonella_phage	1.2e-48	85.8
AYL70087.1\|964862_965099_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	2.7e-15	59.7
AYL70088.1\|965098_965326_+	hypothetical protein	A0A1S6L007	Salmonella_phage	4.7e-33	89.3
AYL70089.1\|965322_965733_+	DUF3850 domain-containing protein	A0A1S6KVH3	Escherichia_phage	2.4e-11	48.6
AYL70090.1\|965707_968080_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	92.3
AYL70091.1\|968194_968380_+	hypothetical protein	E5G6M0	Salmonella_phage	7.3e-08	49.2
AYL70092.1\|968454_968658_+	hypothetical protein	NA	NA	NA	NA
AYL70093.1\|968725_969967_+	hypothetical protein	NA	NA	NA	NA
AYL70094.1\|969966_971055_+	hypothetical protein	NA	NA	NA	NA
AYL70095.1\|971099_972128_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	3.5e-176	92.9
AYL70096.1\|972127_972970_-\|terminase	terminase-like protein	E5G6M4	Salmonella_phage	1.1e-151	99.6
AYL70097.1\|972912_973350_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	7.0e-57	78.6
AYL70098.1\|973363_973807_-	hypothetical protein	NA	NA	NA	NA
AYL70099.1\|973891_974470_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.6e-104	95.8
AYL70100.1\|974466_974826_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	2.0e-57	95.0
974707:974723	attR	NA	NA	NA	NA
AYL70101.1\|975784_976243_+\|tail	phage tail protein	U5P083	Shigella_phage	2.9e-13	34.3
AYL70102.1\|976507_977539_+\|transposase	IS630 family transposase	NA	NA	NA	NA
AYL70103.1\|977544_978306_-	hypothetical protein	NA	NA	NA	NA
AYL70104.1\|978628_978826_+	Hin recombinase	A0A1S6L009	Salmonella_phage	2.7e-16	85.1
AYL70105.1\|978909_979653_+	hypothetical protein	A0A1S6KZY7	Salmonella_phage	1.7e-108	59.0
AYL70106.1\|979662_980178_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	7.4e-90	96.5
AYL70107.1\|980232_980535_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	6.1e-44	97.0
AYL70108.1\|980549_980669_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	6.7e-15	97.4

DBSCAN-SWA_3

1055860 : 1088836

Escherichia_phage(27.03%)

tail,integrase,tRNA

attL 1042242:1042256|attR 1061224:1061238

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1042242:1042256	attL	NA	NA	NA	NA
AYL70165.1\|1055860_1057261_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.0e-80	35.9
AYL70166.1\|1057428_1058631_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AYL70167.1\|1058825_1060118_-\|integrase	integrase	S4TSP2	Salmonella_phage	2.2e-239	93.7
AYL70168.1\|1060162_1060411_-	excisionase	S4TND0	Salmonella_phage	1.5e-35	85.0
AYL70169.1\|1060418_1060565_-	hypothetical protein	A0A1B5FPC2	Escherichia_phage	1.0e-17	79.2
AYL70170.1\|1060564_1060876_-	hypothetical protein	NA	NA	NA	NA
AYL70171.1\|1060875_1061337_-	ATPase	A0A1B5FPC7	Escherichia_phage	9.3e-44	53.1
1061224:1061238	attR	NA	NA	NA	NA
AYL70172.1\|1061333_1061558_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	3.6e-09	44.4
AYL70173.1\|1061557_1062151_-	hypothetical protein	A0A2I7QNC9	Vibrio_phage	3.1e-07	28.5
AYL70174.1\|1062161_1062740_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	3.3e-62	59.4
AYL70175.1\|1062736_1063144_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	2.5e-24	47.8
AYL70176.1\|1063333_1063585_-	hypothetical protein	A0A286SGR4	Klebsiella_phage	1.9e-27	71.4
AYL73766.1\|1063584_1063941_-	hypothetical protein	A0A1B5FPB3	Escherichia_phage	7.7e-22	50.4
AYL70177.1\|1064059_1064329_-	hypothetical protein	NA	NA	NA	NA
AYL70178.1\|1064390_1064816_-	hypothetical protein	A0A1B5FPB2	Escherichia_phage	2.4e-06	50.0
AYL70179.1\|1064812_1065004_-	hypothetical protein	A0A1B5FPB5	Escherichia_phage	3.3e-11	63.0
AYL70180.1\|1065004_1065217_-	hypothetical protein	NA	NA	NA	NA
AYL70181.1\|1065409_1066099_-	XRE family transcriptional regulator	K7PK07	Enterobacteria_phage	2.7e-71	64.8
AYL70182.1\|1066209_1066437_+	transcriptional regulator	NA	NA	NA	NA
AYL70183.1\|1066438_1066918_+	hypothetical protein	NA	NA	NA	NA
AYL70184.1\|1067008_1067920_+	helix-turn-helix domain-containing protein	Q8W642	Enterobacteria_phage	8.1e-108	70.9
AYL70185.1\|1067934_1068816_+	AAA family ATPase	Q8W641	Enterobacteria_phage	8.2e-81	62.4
AYL70186.1\|1068812_1070171_+	helicase	Q8W640	Enterobacteria_phage	3.2e-177	69.6
AYL70187.1\|1070181_1070997_+	antitermination protein	A0A1B5FPA5	Escherichia_phage	3.1e-114	73.8
AYL70188.1\|1071217_1071622_+	hypothetical protein	NA	NA	NA	NA
AYL70189.1\|1072139_1072409_+	hypothetical protein	G8C7W1	Escherichia_phage	3.9e-34	92.1
AYL70190.1\|1072365_1072560_+	hypothetical protein	K7PM01	Enterobacterial_phage	9.1e-17	90.7
AYL70191.1\|1072697_1072880_+	hypothetical protein	NA	NA	NA	NA
AYL70192.1\|1073100_1073562_+	hypothetical protein	K7PH02	Enterobacteria_phage	4.2e-44	65.8
AYL70193.1\|1073577_1075035_+	glycosyltransferase	K7PKP3	Enterobacterial_phage	6.4e-272	91.5
AYL70194.1\|1075016_1075607_+	hypothetical protein	F1C588	Cronobacter_phage	1.1e-102	89.8
AYL70195.1\|1075603_1075945_+	HNH endonuclease	K7PM05	Enterobacterial_phage	2.3e-63	97.3
AYL70196.1\|1076093_1076432_+\|tail	phage tail protein	K7P7R1	Enterobacteria_phage	1.9e-62	99.1
AYL70197.1\|1076428_1077187_+\|tail	phage minor tail protein L	G8C7J7	Escherichia_phage	5.7e-147	98.8
AYL70198.1\|1077188_1077899_+	peptidase P60	K7PGV2	Enterobacterial_phage	1.1e-144	97.0
AYL70199.1\|1077928_1078276_+	hypothetical protein	Q5G8W9	Enterobacteria_phage	3.4e-06	32.4
AYL70200.1\|1078282_1078618_+	hypothetical protein	Q6UAW3	Klebsiella_phage	1.2e-21	47.7
AYL70201.1\|1078673_1079273_+\|tail	phage tail protein	K7PM97	Enterobacterial_phage	1.8e-79	77.9
AYL70202.1\|1082025_1082343_+	hypothetical protein	K7PJS1	Enterobacterial_phage	1.1e-22	54.0
AYL70203.1\|1082343_1083018_+	hypothetical protein	O64337	Escherichia_phage	3.8e-54	52.0
AYL70204.1\|1083126_1083366_+	cor protein	K7PLZ0	Enterobacterial_phage	7.0e-19	57.1
AYL70205.1\|1083424_1084573_+	hypothetical protein	Q5G8V6	Enterobacteria_phage	2.0e-156	74.7
AYL70206.1\|1084718_1084958_-	virulence protein MsgA	K7PKM2	Enterobacterial_phage	2.6e-34	92.4
AYL70207.1\|1085384_1087997_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.7e-18	21.4
AYL70208.1\|1088068_1088836_-	aliphatic sulfonates ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-29	37.1

DBSCAN-SWA_4

1311707 : 1318657

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL70413.1\|1311707_1312958_+	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	9.4e-22	94.4
AYL70414.1\|1313092_1313602_-	DedA family protein	NA	NA	NA	NA
AYL70415.1\|1313776_1314019_-	DNA-damage-inducible protein I	Q6UAW0	Klebsiella_phage	3.4e-29	76.6
AYL70416.1\|1314097_1314331_+	DNA polymerase V	A0A222YZE2	Escherichia_phage	1.0e-22	83.3
AYL70417.1\|1314407_1315106_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.8e-89	67.7
AYL73778.1\|1315191_1315512_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	2.5e-19	44.8
AYL70418.1\|1315555_1316845_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.7e-165	70.2
AYL70419.1\|1316857_1317283_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	7.3e-51	70.7
AYL73779.1\|1318171_1318657_+	hypothetical protein	A0A1B0VBR9	Salmonella_phage	2.3e-08	34.9

DBSCAN-SWA_5

1414692 : 1430903

Escherichia_phage(15.38%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL70505.1\|1414692_1415145_-	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	1.2e-27	55.8
AYL70506.1\|1415269_1415437_+	Arc family DNA binding domain-containing protein	G9L6D7	Escherichia_phage	2.5e-15	70.9
AYL70507.1\|1415423_1416095_+	hypothetical protein	H6WRU8	Salmonella_phage	2.7e-31	45.5
AYL70508.1\|1416154_1416934_+	phage antirepressor Ant	H6WRU9	Salmonella_phage	4.3e-73	63.5
AYL70509.1\|1417315_1419244_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	4.4e-127	36.8
AYL70510.1\|1419247_1419790_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	8.2e-15	32.9
AYL70511.1\|1419886_1420084_+	50S ribosomal protein L35	NA	NA	NA	NA
AYL70512.1\|1420139_1420496_+	50S ribosomal protein L20	NA	NA	NA	NA
AYL70513.1\|1420865_1421849_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
AYL70514.1\|1421864_1424252_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
AYL70515.1\|1424256_1424556_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
AYL70516.1\|1424709_1425690_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-14	24.8
AYL70517.1\|1425750_1426302_+	glutathione peroxidase	NA	NA	NA	NA
AYL70518.1\|1426301_1427051_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	30.3
AYL70519.1\|1427128_1427593_+	endopeptidase	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
AYL70520.1\|1427909_1428623_+	EAL domain-containing protein	NA	NA	NA	NA
AYL70521.1\|1428684_1430127_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	7.7e-52	35.3
AYL70522.1\|1430123_1430903_-	heme ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	6.7e-10	26.4

DBSCAN-SWA_6

2052609 : 2143289

109

Enterobacteria_phage(40.62%)

protease,capsid,holin,terminase,head,tRNA,tail,portal,integrase

attL 2061738:2061752|attR 2139555:2139569

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL71080.1\|2052609_2053491_-\|protease	protease HtpX	NA	NA	NA	NA
AYL71081.1\|2053683_2055732_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.2e-87	33.7
AYL71082.1\|2055751_2056438_-	RNA chaperone ProQ	NA	NA	NA	NA
AYL71083.1\|2056534_2057032_-	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA
AYL71084.1\|2057160_2058444_+	paraquat-inducible protein A	NA	NA	NA	NA
AYL71085.1\|2058412_2061046_+	MCE family protein	NA	NA	NA	NA
AYL71086.1\|2061125_2062547_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
2061738:2061752	attL	NA	NA	NA	NA
AYL71087.1\|2062644_2062884_+	DUF1480 domain-containing protein	NA	NA	NA	NA
AYL71088.1\|2062986_2063178_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AYL71089.1\|2063178_2063820_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	5.1e-56	50.9
AYL71090.1\|2064232_2064571_-	DUF2511 domain-containing protein	NA	NA	NA	NA
AYL71091.1\|2064591_2065464_-	hypothetical protein	NA	NA	NA	NA
AYL71092.1\|2065467_2065842_-	CopC domain-containing protein YobA	NA	NA	NA	NA
AYL71093.1\|2065985_2066216_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.0e-14	60.3
AYL71094.1\|2066322_2066979_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
AYL71095.1\|2067002_2067665_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	4.1e-08	30.6
AYL71096.1\|2067655_2069734_-	oligopeptidase B	NA	NA	NA	NA
AYL71097.1\|2069796_2070456_-	DUF533 domain-containing protein	NA	NA	NA	NA
AYL71098.1\|2070550_2070904_-	hypothetical protein	NA	NA	NA	NA
AYL71099.1\|2071025_2071316_-	damage-inducible protein YebG	NA	NA	NA	NA
AYL71100.1\|2071447_2072626_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
AYL71101.1\|2072694_2073336_-	keto-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
AYL71102.1\|2073370_2075182_-	phosphogluconate dehydratase	NA	NA	NA	NA
AYL71103.1\|2075415_2076891_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	8.3e-78	37.1
AYL73818.1\|2076863_2077043_+	hypothetical protein	NA	NA	NA	NA
AYL73819.1\|2077258_2078128_+	transcriptional regulator HexR	NA	NA	NA	NA
AYL71104.1\|2078246_2079689_+	pyruvate kinase	NA	NA	NA	NA
AYL71105.1\|2079732_2080704_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AYL71106.1\|2080823_2082143_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	36.8
AYL71107.1\|2082158_2083118_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
AYL71108.1\|2083181_2083937_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	1.4e-17	28.3
AYL71109.1\|2083933_2084719_+	zinc ABC transporter permease	NA	NA	NA	NA
AYL71110.1\|2084797_2085808_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.6e-08	25.4
AYL71111.1\|2085816_2086428_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AYL71112.1\|2086508_2087030_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
AYL71113.1\|2087064_2087808_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AYL71114.1\|2087836_2088280_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
AYL71115.1\|2088281_2090054_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AYL71116.1\|2090342_2090909_+	hydrolase	NA	NA	NA	NA
AYL73820.1\|2090990_2091107_-	preprotein translocase subunit SecY	NA	NA	NA	NA
AYL71117.1\|2091241_2091913_+	DUF159 family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	9.0e-80	59.9
AYL71118.1\|2091905_2093174_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	8.4e-204	81.0
AYL71119.1\|2093175_2093595_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	5.2e-33	54.3
AYL71120.1\|2093672_2093915_+	DNA-damage-inducible protein I	Q6UAW0	Klebsiella_phage	2.6e-29	76.6
AYL71121.1\|2094060_2095209_-	hypothetical protein	Q5G8V6	Enterobacteria_phage	4.5e-156	75.0
AYL71122.1\|2095267_2095507_-	cor protein	K7PLZ0	Enterobacterial_phage	7.0e-19	57.1
AYL71123.1\|2095615_2096290_-	hypothetical protein	O64337	Escherichia_phage	2.9e-54	52.4
AYL71124.1\|2096290_2096605_-	hypothetical protein	K7PJS1	Enterobacterial_phage	5.4e-27	57.7
AYL71125.1\|2096604_2099790_-	host specificity protein	O64335	Escherichia_phage	0.0e+00	87.7
AYL71126.1\|2099845_2100427_-\|tail	phage tail protein	K7PHE5	Enterobacteria_phage	1.2e-75	76.7
AYL73821.1\|2100489_2100690_-	hypothetical protein	NA	NA	NA	NA
AYL71127.1\|2101002_2101719_-	peptidase P60	K7PJV6	Enterobacteria_phage	2.3e-134	90.3
AYL71128.1\|2101720_2102476_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	3.7e-130	86.1
AYL71129.1\|2102472_2102820_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	1.4e-39	70.4
AYL71130.1\|2102823_2105340_-\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	7.3e-308	68.4
AYL71131.1\|2105317_2105638_-\|tail	phage tail assembly protein T	K7PHE1	Enterobacteria_phage	2.7e-34	69.8
AYL71132.1\|2105646_2106054_-\|tail	phage minor tail protein G	K7PM17	Enterobacteria_phage	2.3e-25	59.3
AYL71133.1\|2106090_2106828_-\|tail	phage tail protein	O64327	Escherichia_phage	5.4e-78	60.0
AYL71134.1\|2106835_2107234_-\|tail	phage tail protein	K7P7G5	Enterobacteria_phage	2.8e-60	81.8
AYL71135.1\|2107230_2107785_-\|tail	phage tail protein	K7PKQ5	Enterobacteria_phage	1.6e-74	91.4
AYL71136.1\|2107794_2108148_-\|tail	phage tail protein	K7P6U9	Enterobacteria_phage	5.8e-46	74.4
AYL71137.1\|2108159_2108564_-	DNA-packaging protein	K7P7M3	Enterobacteria_phage	1.2e-23	53.5
AYL71138.1\|2108609_2109635_-\|capsid	minor capsid protein E	K7PGW9	Enterobacteria_phage	4.3e-182	92.7
AYL71139.1\|2109702_2110035_-\|head	head decoration protein	E4WL24	Enterobacteria_phage	5.0e-47	82.7
AYL71140.1\|2110044_2111382_-\|capsid	capsid assembly protein	O64320	Escherichia_phage	2.8e-189	84.1
AYL71141.1\|2111362_2112955_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	9.7e-290	92.1
AYL71142.1\|2112951_2113158_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	3.2e-28	95.5
AYL71143.1\|2113157_2115080_-\|terminase	terminase	E4WL19	Enterobacteria_phage	0.0e+00	97.8
AYL71144.1\|2115054_2115600_-\|terminase	terminase small subunit	E4WL18	Enterobacteria_phage	1.2e-95	100.0
AYL71145.1\|2115852_2116512_-	hypothetical protein	NA	NA	NA	NA
AYL71146.1\|2116656_2116860_-	hypothetical protein	NA	NA	NA	NA
AYL71147.1\|2116921_2117455_-	hypothetical protein	NA	NA	NA	NA
AYL71148.1\|2117495_2118023_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	4.2e-08	33.9
AYL71149.1\|2118019_2118568_-	lysozyme	K7PM52	Enterobacteria_phage	4.1e-99	94.0
AYL71150.1\|2118539_2118818_-\|holin	holin	K7PGZ9	Enterobacteria_phage	4.3e-44	95.7
AYL71151.1\|2118963_2120016_-	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	1.0e-170	80.7
AYL71152.1\|2120166_2120358_-	TrmB family transcriptional regulator	Q8SBE3	Shigella_phage	1.3e-23	85.7
AYL71153.1\|2120628_2121510_+	hypothetical protein	NA	NA	NA	NA
AYL71154.1\|2121525_2121783_+	hypothetical protein	NA	NA	NA	NA
AYL71155.1\|2121779_2122178_+	hypothetical protein	NA	NA	NA	NA
AYL71156.1\|2123582_2124266_-	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	3.0e-62	60.0
AYL71157.1\|2124279_2124666_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	4.1e-61	89.1
AYL71158.1\|2124662_2125982_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	5.1e-119	52.5
AYL71159.1\|2125978_2126836_-	GntR family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	4.1e-61	97.4
AYL71160.1\|2126825_2127005_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.3e-14	73.1
AYL71161.1\|2127177_2127729_-	DNA-binding protein	A0A1C9II13	Salmonella_phage	1.4e-65	67.8
AYL71162.1\|2127757_2128000_-	Cro/Cl family transcriptional regulator	K7PHA1	Enterobacteria_phage	1.1e-19	67.1
AYL71163.1\|2128099_2128810_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	1.5e-77	67.0
AYL71164.1\|2128884_2129091_-	hypothetical protein	K7P7I0	Enterobacteria_phage	4.3e-17	69.1
AYL71165.1\|2129478_2129679_-	hypothetical protein	A0A1C9IHY8	Salmonella_phage	4.8e-05	70.6
AYL71166.1\|2129962_2130142_-	hypothetical protein	A5LH65	Enterobacteria_phage	1.5e-05	61.9
AYL71167.1\|2130140_2130512_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-58	92.7
AYL71168.1\|2130568_2131396_+	hypothetical protein	Q8HAA2	Salmonella_phage	2.5e-140	90.5
AYL71169.1\|2131524_2132064_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	1.6e-79	79.9
AYL71170.1\|2132224_2132479_+	hypothetical protein	NA	NA	NA	NA
AYL71171.1\|2132475_2132970_+	hypothetical protein	NA	NA	NA	NA
AYL71172.1\|2132966_2133365_+	hypothetical protein	A0A0M4R357	Salmonella_phage	7.9e-07	47.4
AYL71173.1\|2133366_2133789_+	HNH endonuclease	C6ZR29	Salmonella_phage	1.5e-61	81.4
AYL73822.1\|2134590_2135163_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	3.0e-92	81.6
AYL71174.1\|2135200_2135437_+	excisionase	Q8W657	Enterobacteria_phage	2.1e-39	92.3
AYL71175.1\|2135495_2136809_+\|integrase	integrase	Q8W658	Enterobacteria_phage	1.3e-236	90.4
AYL71176.1\|2136796_2137561_+	hypothetical protein	Q859D1	Escherichia_coli_phage	1.5e-54	78.0
AYL71177.1\|2137613_2138009_+	hypothetical protein	NA	NA	NA	NA
AYL71178.1\|2138049_2138793_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	3.2e-25	31.3
AYL71179.1\|2138789_2139758_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
2139555:2139569	attR	NA	NA	NA	NA
AYL71180.1\|2139778_2139967_-	hypothetical protein	NA	NA	NA	NA
AYL71181.1\|2140001_2140748_-	copper homeostasis protein CutC	NA	NA	NA	NA
AYL71182.1\|2140750_2141317_-	VOC family protein	NA	NA	NA	NA
AYL71183.1\|2141555_2143289_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	2.2e-85	33.4

DBSCAN-SWA_7

2308279 : 2314573

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL71354.1\|2308279_2308828_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.2e-51	57.0
AYL71355.1\|2308831_2309710_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.3e-107	63.4
AYL71356.1\|2309761_2310661_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	6.1e-31	35.3
AYL71357.1\|2310660_2311746_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.3e-100	53.6
AYL71358.1\|2312119_2313013_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	2.5e-45	40.1
AYL71359.1\|2313178_2314573_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	8.0e-22	34.9

DBSCAN-SWA_8

2356424 : 2366002

Bacillus_phage(28.57%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL71389.1\|2356424_2357828_+	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	5.0e-32	29.2
AYL71390.1\|2357824_2358547_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	9.2e-30	32.7
AYL71391.1\|2358682_2359015_+	DUF1508 domain-containing protein	NA	NA	NA	NA
AYL71392.1\|2359174_2360536_+	U32 family peptidase	Q6DW11	Phage_TP	6.9e-204	92.6
AYL71393.1\|2360805_2363082_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
AYL71394.1\|2363112_2363433_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
AYL71395.1\|2363756_2363981_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
AYL71396.1\|2364055_2366002_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.4e-40	41.8

DBSCAN-SWA_9

2404059 : 2412478

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL71432.1\|2404059_2406093_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	3.0e-54	27.6
AYL71433.1\|2406299_2406758_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	1.0e-50	69.3
AYL73829.1\|2406800_2407271_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	4.9e-64	76.9
AYL71434.1\|2407317_2408037_-	two-component system response regulator YehT	NA	NA	NA	NA
AYL71435.1\|2408033_2409719_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.1e-280	91.6
AYL71436.1\|2409944_2410676_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.0e-105	93.5
AYL71437.1\|2410727_2410835_+	hypothetical protein	NA	NA	NA	NA
AYL71438.1\|2410815_2411547_-	ABC transporter permease	NA	NA	NA	NA
AYL71439.1\|2411530_2412478_-	ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-21	29.2

DBSCAN-SWA_10

2607854 : 2682936

Cronobacter_phage(20.0%)

tRNA,holin,terminase,head,coat,tail,integrase

attL 2609041:2609057|attR 2680626:2680642

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL71606.1\|2607854_2608667_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
AYL71607.1\|2608666_2609680_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
2609041:2609057	attL	NA	NA	NA	NA
AYL71608.1\|2609748_2610885_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	5.2e-19	26.6
AYL73839.1\|2610993_2611995_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
AYL71609.1\|2611991_2613170_-	arabinose transporter	NA	NA	NA	NA
AYL73840.1\|2613349_2613724_-	hypothetical protein	NA	NA	NA	NA
AYL71610.1\|2613895_2614150_+	DNA-binding protein	A0A0M4UV99	Ralstonia_phage	5.5e-14	51.3
AYL71611.1\|2614300_2614669_+	hypothetical protein	H6SUH4	Campylobacter_virus	1.5e-07	34.6
AYL71612.1\|2614668_2615187_+	DUF3828 domain-containing protein	NA	NA	NA	NA
AYL71613.1\|2615236_2616451_-	beta-ketoacyl-[acyl-carrier-protein] synthase I	NA	NA	NA	NA
AYL71614.1\|2616550_2618611_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
AYL71615.1\|2618725_2619001_-	YfcL family protein	NA	NA	NA	NA
AYL71616.1\|2619033_2619582_-	elongation factor P hydroxylase	NA	NA	NA	NA
AYL71617.1\|2619581_2620391_-	hypothetical protein	NA	NA	NA	NA
AYL71618.1\|2620390_2621215_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
AYL71619.1\|2621218_2622304_-	chorismate synthase	A0A291AU41	Pandoravirus	1.7e-88	46.7
AYL71620.1\|2622343_2623276_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
AYL71621.1\|2623442_2623994_+	endonuclease SmrB	NA	NA	NA	NA
AYL71622.1\|2624074_2624560_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
AYL71623.1\|2624768_2626916_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
AYL71624.1\|2626915_2628226_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
AYL71625.1\|2628402_2628687_-	hypothetical protein	NA	NA	NA	NA
AYL71626.1\|2628771_2629023_-	hypothetical protein	NA	NA	NA	NA
AYL71627.1\|2629058_2630390_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
AYL71628.1\|2630449_2631205_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AYL71629.1\|2631493_2632435_+	hypothetical protein	E7DYY8	Enterobacteria_phage	1.7e-148	89.3
AYL71630.1\|2632748_2633918_+\|integrase	integrase	C6ZR22	Salmonella_phage	3.9e-211	90.2
AYL71631.1\|2636170_2636875_-	transcriptional regulator	A0A0H5AUF7	Pseudomonas_phage	6.2e-39	43.4
AYL71632.1\|2636939_2637608_-	hypothetical protein	H6WRU8	Salmonella_phage	2.6e-31	45.5
AYL71633.1\|2637594_2637762_-	Arc family DNA binding domain-containing protein	G9L6D7	Escherichia_phage	2.5e-15	70.9
AYL71634.1\|2637886_2638339_+	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	1.2e-27	55.8
AYL71635.1\|2638358_2640362_-\|tail	phage tail protein	G8GV21	Salmonella_phage	5.5e-157	51.9
AYL71636.1\|2640419_2642897_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	87.1
AYL71637.1\|2642883_2643276_-	hypothetical protein	F1C5F2	Cronobacter_phage	2.3e-67	91.3
AYL71638.1\|2643272_2643737_-	HNH endonuclease	Q6XQF0	Escherichia_phage	3.4e-25	40.1
AYL71639.1\|2643813_2644284_-	hypothetical protein	F1C5F1	Cronobacter_phage	6.5e-77	91.0
AYL71640.1\|2644283_2644781_-	hypothetical protein	F1C5F0	Cronobacter_phage	2.4e-85	87.3
AYL71641.1\|2644818_2645049_-	hypothetical protein	NA	NA	NA	NA
AYL71642.1\|2645057_2647391_-\|tail	phage tail tape measure protein	A0A1B1W284	Salmonella_phage	3.5e-155	50.6
AYL71643.1\|2647445_2648189_-	hypothetical protein	G0ZNE7	Cronobacter_phage	4.4e-59	50.0
AYL71644.1\|2648239_2648995_-	DNA breaking-rejoining protein	G0ZNE6	Cronobacter_phage	4.9e-58	53.4
AYL71645.1\|2649053_2649437_-	hypothetical protein	F1C5E4	Cronobacter_phage	8.3e-38	56.7
AYL71646.1\|2649433_2649802_-	hypothetical protein	F1C5E3	Cronobacter_phage	2.3e-45	75.4
AYL71647.1\|2649804_2650155_-	hypothetical protein	G0ZNE2	Cronobacter_phage	7.6e-38	65.2
AYL71648.1\|2650158_2650395_-	hypothetical protein	NA	NA	NA	NA
AYL71649.1\|2650398_2650569_-	50S ribosomal protein L13	NA	NA	NA	NA
AYL71650.1\|2650568_2650949_-	hypothetical protein	F1C5E2	Cronobacter_phage	3.1e-29	52.4
AYL71651.1\|2650951_2651215_-	hypothetical protein	NA	NA	NA	NA
AYL71652.1\|2651247_2652303_-\|coat	phage coat protein	R9TMI8	Aeromonas_phage	5.4e-103	52.9
AYL71653.1\|2652299_2652761_-	hypothetical protein	B1GS72	Salmonella_phage	2.2e-29	50.3
AYL71654.1\|2652760_2654131_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	3.0e-122	52.3
AYL71655.1\|2654335_2655337_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	4.6e-112	67.5
AYL71656.1\|2655263_2656733_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.0e-149	57.0
AYL71657.1\|2656745_2658218_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	4.1e-250	82.9
AYL71658.1\|2658217_2658820_-	hypothetical protein	G8C7P2	Escherichia_phage	4.9e-77	81.5
AYL71659.1\|2658831_2659011_-	hypothetical protein	NA	NA	NA	NA
AYL71660.1\|2658985_2659204_-	hypothetical protein	NA	NA	NA	NA
AYL71661.1\|2659466_2659853_-	DUF2570 domain-containing protein	S5FKR3	Shigella_phage	7.4e-10	36.7
AYL71662.1\|2659849_2660299_-	muraminidase	A0A0M4R365	Salmonella_phage	5.3e-68	84.6
AYL71663.1\|2660285_2660603_-\|holin	holin	E7C9S8	Salmonella_phage	8.9e-46	86.7
AYL71664.1\|2661030_2661531_-	antiterminator	G8C7V7	Escherichia_phage	1.5e-76	81.1
AYL71665.1\|2661527_2661668_-	hypothetical protein	NA	NA	NA	NA
AYL71666.1\|2661664_2661889_-	protein ninY	Q5G8R9	Enterobacteria_phage	1.4e-29	81.1
AYL71667.1\|2661885_2662473_-	protein NinG	A0A1P8DTE0	Proteus_phage	1.3e-50	55.2
AYL71668.1\|2662465_2662636_-	hypothetical protein	K7P7K0	Enterobacteria_phage	5.9e-20	89.3
AYL71669.1\|2662635_2663091_-	hypothetical protein	K7P7B8	Enterobacteria_phage	1.2e-54	68.9
AYL71670.1\|2663310_2663604_-	DUF4752 domain-containing protein	K7PHN1	Enterobacterial_phage	1.9e-21	45.7
AYL71671.1\|2663603_2664632_-	hypothetical protein	K7PGV7	Enterobacterial_phage	6.1e-19	59.4
AYL71672.1\|2664628_2665072_-	hypothetical protein	G9L662	Escherichia_phage	2.1e-16	47.6
AYL71673.1\|2665068_2665635_-	hypothetical protein	NA	NA	NA	NA
AYL71674.1\|2665631_2666171_-	hypothetical protein	A0A193GYL1	Enterobacter_phage	8.4e-28	54.7
AYL71675.1\|2666167_2666467_-	protein ren	M1FPD5	Enterobacteria_phage	8.2e-17	52.6
AYL73841.1\|2666463_2667243_-	replication protein	A0A193GYX1	Enterobacter_phage	6.8e-95	64.6
AYL71676.1\|2667239_2667968_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	1.5e-35	66.7
AYL71677.1\|2668101_2668644_-	regulator	M9NZI6	Enterobacteria_phage	1.0e-81	87.8
AYL71678.1\|2668674_2668896_-	transcriptional regulator	M9NZA8	Enterobacteria_phage	3.5e-33	100.0
AYL73842.1\|2669013_2669724_+	phage repressor protein C	M9NZE3	Enterobacteria_phage	2.9e-129	96.2
AYL71679.1\|2669797_2670178_+	hypothetical protein	NA	NA	NA	NA
AYL71680.1\|2670219_2670429_-	hypothetical protein	G8C7T7	Escherichia_phage	2.5e-20	81.2
AYL71681.1\|2671016_2671466_+	hypothetical protein	G8C7T5	Escherichia_phage	1.5e-75	99.3
AYL71682.1\|2671620_2672184_+	hypothetical protein	A5PJ37	Escherichia_virus	3.8e-23	37.6
AYL71683.1\|2672219_2672600_+	hypothetical protein	NA	NA	NA	NA
AYL71684.1\|2672751_2672961_+	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	1.3e-32	91.3
AYL71685.1\|2673031_2674003_+	hypothetical protein	M9P0E1	Enterobacteria_phage	6.7e-84	98.2
AYL71686.1\|2674010_2674295_+	hypothetical protein	G8C7T1	Escherichia_phage	3.2e-47	92.6
AYL71687.1\|2674313_2675159_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	8.2e-70	60.7
AYL71688.1\|2675155_2675362_+	MarR family transcriptional regulator	A0A173GC36	Salmonella_phage	5.6e-17	80.0
AYL71689.1\|2675358_2676039_+	exonuclease	M9NZE1	Enterobacteria_phage	9.3e-125	93.4
AYL71690.1\|2676496_2677048_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	8.2e-55	58.8
AYL71691.1\|2677044_2677263_+	hypothetical protein	NA	NA	NA	NA
AYL71692.1\|2677360_2677840_+	hypothetical protein	NA	NA	NA	NA
AYL71693.1\|2677820_2678042_+	conjugal transfer protein TraR	Q9ZXI6	Pseudomonas_virus	8.8e-08	46.8
AYL71694.1\|2678041_2678419_+	protein ninX	A0A1P8DTT2	Salmonella_phage	1.3e-19	44.8
AYL71695.1\|2678627_2678969_+	hypothetical protein	I3PV00	Vibrio_phage	2.0e-22	52.9
AYL71696.1\|2679009_2679312_+	hypothetical protein	A0A1B3AZN4	Gordonia_phage	1.9e-05	33.3
AYL71697.1\|2679418_2679796_+	hypothetical protein	Q7Y3U8	Yersinia_phage	8.4e-43	67.2
AYL71698.1\|2679876_2680080_+	hypothetical protein	I6RSG8	Salmonella_phage	8.3e-21	65.7
AYL71699.1\|2680233_2680863_-	DNA-binding protein	NA	NA	NA	NA
2680626:2680642	attR	NA	NA	NA	NA
AYL71700.1\|2681037_2682936_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.4e-14	24.0

DBSCAN-SWA_11

3463235 : 3508938

Pseudomonas_phage(12.5%)

transposase,integrase,tRNA

attL 3472791:3472813|attR 3497342:3497364

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL72347.1\|3463235_3464249_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.4e-110	59.8
AYL72348.1\|3464485_3464701_+	30S ribosomal protein S21	NA	NA	NA	NA
AYL72349.1\|3464798_3464894_-	hypothetical protein	NA	NA	NA	NA
AYL72350.1\|3464938_3466684_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.4e-77	38.8
AYL72351.1\|3466927_3468775_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
AYL72352.1\|3468936_3469986_+	receptor	NA	NA	NA	NA
AYL72353.1\|3469996_3471994_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.9e-08	27.2
AYL72354.1\|3472024_3472531_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
3472791:3472813	attL	NA	NA	NA	NA
AYL72355.1\|3472834_3473668_-	DUF4942 domain-containing protein	NA	NA	NA	NA
AYL72356.1\|3473783_3474125_-	toxin	NA	NA	NA	NA
AYL72357.1\|3474145_3474463_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
AYL72358.1\|3474481_3474703_-	DUF987 domain-containing protein	NA	NA	NA	NA
AYL72359.1\|3474711_3475188_-	hypothetical protein	NA	NA	NA	NA
AYL72360.1\|3475203_3475662_-	antirestriction protein	A9J566	Pseudomonas_phage	4.8e-16	34.6
AYL72361.1\|3475740_3475977_-	DUF905 domain-containing protein	NA	NA	NA	NA
AYL72362.1\|3476054_3476465_-	hypothetical protein	A0A1B2IBY1	Erwinia_phage	5.8e-29	47.8
AYL72363.1\|3476553_3477168_-	hypothetical protein	NA	NA	NA	NA
AYL72364.1\|3477164_3477869_-	transcriptional regulator	NA	NA	NA	NA
AYL72365.1\|3478070_3478904_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	4.3e-47	39.1
AYL72366.1\|3479001_3479865_-	hypothetical protein	NA	NA	NA	NA
AYL72367.1\|3480213_3483492_+	helicase	A0A2K5B2B9	Erysipelothrix_phage	3.8e-232	42.3
AYL72368.1\|3484211_3486092_+	ATP-dependent endonuclease	E5E3R2	Burkholderia_phage	1.8e-247	71.5
AYL72369.1\|3486094_3487504_+	DUF2130 domain-containing protein	NA	NA	NA	NA
AYL72370.1\|3487563_3488871_+	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	1.2e-64	42.3
AYL72371.1\|3489032_3489632_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	9.4e-105	97.5
AYL72372.1\|3489866_3490547_-	inovirus Gp2 family protein	NA	NA	NA	NA
AYL72373.1\|3490823_3492338_-	DUF3987 domain-containing protein	NA	NA	NA	NA
AYL72374.1\|3492397_3492634_-	AlpA family phage regulatory protein	NA	NA	NA	NA
AYL72375.1\|3492740_3493814_-	hypothetical protein	NA	NA	NA	NA
AYL72376.1\|3494037_3495069_-\|transposase	IS630 family transposase	NA	NA	NA	NA
AYL72377.1\|3495202_3495361_+	hypothetical protein	NA	NA	NA	NA
AYL73879.1\|3495357_3495912_-	cell filamentation protein Fic	NA	NA	NA	NA
AYL72378.1\|3495976_3497293_-\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	1.3e-34	30.0
AYL72379.1\|3497979_3498843_-	hypothetical protein	NA	NA	NA	NA
3497342:3497364	attR	NA	NA	NA	NA
AYL72380.1\|3499696_3500848_-\|transposase	IS30 family transposase IS30	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
AYL72381.1\|3501294_3501705_-	hypothetical protein	NA	NA	NA	NA
AYL72382.1\|3501998_3503522_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.7e-44	31.8
AYL72383.1\|3504062_3505145_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AYL72384.1\|3505465_3506536_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AYL72385.1\|3506889_3508041_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.1e-98	53.7
AYL72386.1\|3508233_3508938_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_12

4044009 : 4076287

Escherichia_phage(40.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL72876.1\|4044009_4045854_-\|tRNA	selenocysteinyl-tRNA-specific translation elongation factor SelB	A0A2K9KZ60	Tupanvirus	4.0e-13	25.5
AYL72877.1\|4045850_4047242_-\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
AYL72878.1\|4047340_4047949_-	glutathione S-transferase	NA	NA	NA	NA
AYL72879.1\|4048019_4049156_-	HlyD family secretion protein	NA	NA	NA	NA
AYL73900.1\|4049158_4049503_-	hypothetical protein	NA	NA	NA	NA
AYL72880.1\|4049550_4050531_-\|transposase	IS5 family transposase ISKpn26	A0A077SK28	Escherichia_phage	1.0e-185	99.4
AYL72881.1\|4050972_4051410_+	hypothetical protein	NA	NA	NA	NA
AYL72882.1\|4051413_4051614_-	hypothetical protein	NA	NA	NA	NA
AYL72883.1\|4053105_4054335_-	diguanylate phosphodiesterase	NA	NA	NA	NA
AYL72884.1\|4054439_4055144_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	5.3e-139	99.6
AYL72885.1\|4055228_4055786_-\|transposase	transposase	A0A1B0V7I5	Salmonella_phage	3.4e-48	81.3
AYL72886.1\|4055915_4056128_-	DUF3330 domain-containing protein	NA	NA	NA	NA
AYL73901.1\|4056072_4056210_+	mercury resistance protein	NA	NA	NA	NA
AYL72887.1\|4056193_4056430_-	mercury resistance protein	NA	NA	NA	NA
AYL72888.1\|4056426_4056792_-	transcriptional regulator	NA	NA	NA	NA
AYL72889.1\|4056809_4058495_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
AYL72890.1\|4058533_4058959_-	mercury transport protein MerC	NA	NA	NA	NA
AYL72891.1\|4058986_4059262_-	mercuric transporter periplasmic component	NA	NA	NA	NA
AYL72892.1\|4059277_4059658_-	mercuric transporter	NA	NA	NA	NA
AYL72893.1\|4059729_4060185_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
AYL72894.1\|4060389_4061412_+\|transposase	IS110 family transposase IS5708	NA	NA	NA	NA
AYL72895.1\|4061746_4062751_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AYL72896.1\|4063345_4064395_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
AYL72897.1\|4064391_4065612_+	conjugal transfer protein TraI	NA	NA	NA	NA
AYL72898.1\|4065611_4065851_+	DUF2274 domain-containing protein	NA	NA	NA	NA
AYL72899.1\|4065847_4066744_-	LysR family transcriptional regulator	NA	NA	NA	NA
AYL73902.1\|4067000_4067534_+	MarR family transcriptional regulator	NA	NA	NA	NA
AYL72900.1\|4067560_4068520_+	hypothetical protein	NA	NA	NA	NA
AYL72901.1\|4068558_4068945_-	hypothetical protein	NA	NA	NA	NA
AYL72902.1\|4069215_4069704_+	hypothetical protein	NA	NA	NA	NA
AYL73903.1\|4069762_4069945_+	hypothetical protein	NA	NA	NA	NA
AYL72903.1\|4070180_4070756_+	MarR family transcriptional regulator	NA	NA	NA	NA
AYL72904.1\|4071152_4072178_-	oxidoreductase	NA	NA	NA	NA
AYL72905.1\|4072177_4072771_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
AYL72906.1\|4072773_4074006_-	OsmC family protein	NA	NA	NA	NA
AYL72907.1\|4074150_4075110_+	LysR family transcriptional regulator	NA	NA	NA	NA
AYL72908.1\|4075255_4076287_-\|transposase	IS630 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP024674

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP024673

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection