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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP024679 Citrobacter freundii strain UMH15 chromosome, complete genome 2 crisprs WYL,DinG,cas3,csa3,DEDDh 0 1 15 0

Results visualization

1. CP024679
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024679_1 1538833-1538956 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024679_2 4938988-4939082 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP024679_1 1.1|1538876|38|CP024679|CRISPRCasFinder 1538876-1538913 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 3 0.921

1. spacer 1.1|1538876|38|CP024679|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.921

cggacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******..****************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 340717 : 369906 26 Stx2-converting_phage(30.0%) transposase,holin,protease NA
DBSCAN-SWA_2 1018412 : 1031695 9 Stx2-converting_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_3 1295529 : 1302553 9 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 1393695 : 1437406 64 Salmonella_phage(25.93%) coat,integrase,tail,head,terminase,transposase,holin attL 1393493:1393515|attR 1444703:1444725
DBSCAN-SWA_5 1448303 : 1458341 10 Tupanvirus(14.29%) tRNA NA
DBSCAN-SWA_6 2131989 : 2221638 107 Escherichia_phage(20.45%) plate,tail,tRNA,integrase,head,portal,terminase,capsid,protease,holin attL 2190718:2190731|attR 2219652:2219665
DBSCAN-SWA_7 2368007 : 2385716 16 Prochlorococcus_phage(16.67%) NA NA
DBSCAN-SWA_8 2429109 : 2438687 8 Bacillus_phage(28.57%) protease NA
DBSCAN-SWA_9 2476837 : 2485256 9 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_10 2840169 : 2911000 74 Salmonella_phage(61.11%) tail,integrase,terminase,capsid,protease,holin attL 2834473:2834491|attR 2909173:2909191
DBSCAN-SWA_11 3006056 : 3116342 102 Salmonella_phage(71.64%) plate,tail,tRNA,head,portal,capsid NA
DBSCAN-SWA_12 3119974 : 3129389 14 Salmonella_phage(91.67%) integrase attL 3124983:3124996|attR 3129900:3129913
DBSCAN-SWA_13 3519178 : 3577758 55 Bacillus_phage(33.33%) transposase,plate NA
DBSCAN-SWA_14 4766131 : 4809082 59 Shigella_phage(36.0%) plate,tail,integrase,tRNA,head,portal,terminase,capsid,protease,holin attL 4803244:4803259|attR 4815974:4815989
DBSCAN-SWA_15 5270428 : 5340328 84 Pseudomonas_phage(36.84%) plate,tail,tRNA,head,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage