CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP024681	Citrobacter freundii strain UMH14 plasmid pUMH14_1, complete sequence	0 crisprs	cas14j	0	1
CP024682	Citrobacter freundii strain UMH14 plasmid pUMH14_2, complete sequence	0 crisprs	DEDDh,csa3	0	1
CP024680	Citrobacter freundii strain UMH14 chromosome, complete genome	1 crisprs	WYL,DinG,cas3,csa3,DEDDh	1	8

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

33275 : 41554

Escherichia_phage(71.43%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL49860.1\|33275_34385_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.7e-30	28.6
AYL49861.1\|34419_34695_-	regulator protein FrmR	NA	NA	NA	NA
AYL49862.1\|35419_35956_-	ferredoxin-type protein NapF	A0A077SLP0	Escherichia_phage	2.0e-66	65.7
AYL49863.1\|35952_36549_-	dehydrogenase	A0A077SLS7	Escherichia_phage	3.0e-71	63.6
AYL49864.1\|36585_37359_-	dimethyl sulfoxide reductase	A0A077SK59	Escherichia_phage	1.5e-94	71.3
AYL49865.1\|37351_37978_-	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	7.3e-116	88.9
AYL49866.1\|37991_40424_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	0.0e+00	76.4
AYL49867.1\|40498_41554_-\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.2e-06	24.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP024682

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

59430 : 70206

Enterobacteria_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL50039.1\|59430_60090_+	DNA breaking-rejoining protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.0e-75	58.8
AYL50022.1\|60269_60692_+	peptidase	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
AYL50023.1\|60691_61963_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.7e-157	64.2
AYL50024.1\|62108_63080_-	chromosome partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	9.6e-115	68.9
AYL50025.1\|63076_64282_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
AYL50026.1\|64889_66716_+	OLD family endonuclease	E5E3R2	Burkholderia_phage	1.5e-12	23.2
AYL50027.1\|66887_67238_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	2.4e-20	55.2
AYL50028.1\|67386_67818_-	copper-binding protein	NA	NA	NA	NA
AYL50029.1\|68054_69533_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	1.8e-27	31.0
AYL50030.1\|69525_70206_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.9e-32	36.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP024680

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CRISPR-Cas detection and classification

Crispr_ID: CP024680_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024680_1

1491678-1491801

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of CP024680_1

>merge|CP024680|1|1491678-1491801|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP024680|1|1|1491678-1491801|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP024680.1\|AYL46669.1\|1498710_1499415_-\|fimbrial-chaperone-protein	unknown	unknown	gnl\|CDD\|236632
CP024680.1\|AYL46670.1\|1499514_1500219_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185203
CP024680.1\|AYL46660.1\|1487975_1489031_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238562
CP024680.1\|AYL46661.1\|1489017_1490022_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP024680.1\|AYL46659.1\|1486532_1487795_+\|4-aminobutyrate-transaminase	unknown	unknown	gnl\|CDD\|182078
CP024680.1\|AYL46655.1\|1481239_1481713_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|377824
CP024680.1\|AYL46654.1\|1479800_1481228_+\|gamma-aminobutyraldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143411
CP024680.1\|AYL46658.1\|1484950_1486426_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP024680.1\|AYL46656.1\|1481802_1483695_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|379192
CP024680.1\|AYL46665.1\|1492697_1493708_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
CP024680.1\|AYL46667.1\|1495626_1496178_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185201
CP024680.1\|AYL46668.1\|1496174_1498508_-\|fimbrial-assembly-protein	unknown	unknown	gnl\|CDD\|237937
CP024680.1\|AYL46662.1\|1490018_1490771_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
CP024680.1\|AYL46663.1\|1490757_1491480_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270259
CP024680.1\|AYL46672.1\|1501716_1502406_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP024680.1\|AYL46657.1\|1483698_1484907_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|379187
CP024680.1\|AYL49710.1\|1494839_1495481_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185203
CP024680.1\|AYL46671.1\|1500444_1500750_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP024680.1\|AYL46664.1\|1491870_1492053_+\|hypothetical-protein	unknown	unknown	unknown
CP024680.1\|AYL46666.1\|1493786_1494767_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311

Protein	Function_ID	Function_description	E-value
CP024680.1\|AYL46669.1\|1498710_1499415_-\|fimbrial-chaperone-protein	gnl\|CDD\|236632	PRK09918, PRK09918, putative fimbrial chaperone protein; Provisional.	3.53319e-98
CP024680.1\|AYL46670.1\|1499514_1500219_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	7.09982e-32
CP024680.1\|AYL46660.1\|1487975_1489031_+\|hypothetical-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	1.94236e-81
CP024680.1\|AYL46661.1\|1489017_1490022_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	4.09995e-81
CP024680.1\|AYL46659.1\|1486532_1487795_+\|4-aminobutyrate-transaminase	gnl\|CDD\|182078	PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.	0
CP024680.1\|AYL46655.1\|1481239_1481713_+\|polyketide-cyclase	gnl\|CDD\|377824	pfam07366, SnoaL, SnoaL-like polyketide cyclase. This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation.	8.6951e-20
CP024680.1\|AYL46654.1\|1479800_1481228_+\|gamma-aminobutyraldehyde-dehydrogenase	gnl\|CDD\|143411	cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.	0
CP024680.1\|AYL46658.1\|1484950_1486426_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.60138e-139
CP024680.1\|AYL46656.1\|1481802_1483695_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|379192	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.	2.80183e-06
CP024680.1\|AYL46665.1\|1492697_1493708_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	7.49337e-175
CP024680.1\|AYL46667.1\|1495626_1496178_-\|hypothetical-protein	gnl\|CDD\|185201	PRK15301, PRK15301, hypothetical protein; Provisional.	2.46325e-08
CP024680.1\|AYL46668.1\|1496174_1498508_-\|fimbrial-assembly-protein	gnl\|CDD\|237937	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional.	0
CP024680.1\|AYL46662.1\|1490018_1490771_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	9.04281e-81
CP024680.1\|AYL46663.1\|1490757_1491480_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270259	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.28536e-90
CP024680.1\|AYL46672.1\|1501716_1502406_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	7.36654e-56
CP024680.1\|AYL46657.1\|1483698_1484907_+\|alcohol-dehydrogenase	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.52941e-10
CP024680.1\|AYL49710.1\|1494839_1495481_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	1.77492e-20
CP024680.1\|AYL46671.1\|1500444_1500750_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.10982e-10
CP024680.1\|AYL46666.1\|1493786_1494767_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.19669e-78

>CP024680.1|AYL46663.1|1490757_1491480_-|molybdate-ABC-transporter-substrate-binding-protein
MPSSILLFAAGSLRPAFTPLISQFTRMSGIDVKIEYGPAGLLRERIEAGEPCALFASANREHPQNLLVRNKAVSTHTFCWNKLSLVSNRIGTWLDLLRDPTLRPGTSTPGCDPSGDYTWAFFDNMDVLEPGLGRQLRARAIPLVGGRDTVKIPQGELASAWILRQGLADLFIGYAHYAHALHAMTDVHYVAIPDEHNICCEYQLAVLDASKEVMALVEFILSRSGQAFLTAAGFLPLNAE
>CP024680.1|AYL46662.1|1490018_1490771_+|ABC-transporter-ATP-binding-protein
MIPAALRVNQLSYGYRAPLFEPLTFCCQKGEIWAVLGRNGLGKSTLLDTLTGTLPALGGSIENNGGIGIVAQHSHLPFPYTVSDVVLMGRAQHVKLFAQPSQQDQQRAMQALEQLSIAHLASSSFGSLSGGQQQLVMIARALVTECQTLLLDEPCSALDLANQQVVLQLISDLAHQQGCSILFSTHDPLHALQVASHTLLLLPEGKWRAGPTDSIVTEENLFLAYGLPLRKLSVENHPTPFIAPLFSIRR
>CP024680.1|AYL46661.1|1489017_1490022_+|iron-ABC-transporter-permease
MQLSNRFLPQQPLLIVVVLLLGVSSLCLGQYPLSLSEVFYHLTHYSDAEGIASQVIWTVRLPRILMALLAGGALGLCGATLQGVFHNPLVDPHIIGVTSGAAFGGTLAILLGLSPLLMMGSTFFFGLMALILVYAIAALQGLENTLVLILSGIILSGFFAALVSLIQYQADTEETLPNIVFWLLGSFATANWHKVLLLAVPVGIAATVLFQLRWRINLLSLNDKDARALGGAVVPLRRSVLVCCAFLVAAQVAVSGSIAWVGLVIPHLARLLVGVDHRRLLPCAFWLGGGFMIVVDDIARTLMHAEIPLGIITALFGAPLFAFLLIRTSRREKS
>CP024680.1|AYL46660.1|1487975_1489031_+|hypothetical-protein
MLTFRSFVLVCASMLFAFSAQADRTITDQLGRQVTIPDHVDKVVVLQHQTLNILVQLNAQQDIVGVMSSWKKQLGPEFARFMPTITTLPTPGDLTSVNIESLLAIHPQVVFVANYAPAEMIQQIQNAGIPVVAISLRKDAGGQQNKMNPTMADEEQVYNEGLKQGIRLIADVVGRKPQAETLIDYVFAARAKFNAPVANIPDAQKVRIYMANPDLMTYGSGKYTGLMMQHAGGLNVAAASVKGACQVALEQVLAWNPQVIFVQDRYPQVVTQIQNDPNWQGIDAVKNHRVWLMPEYAKAWGYPMPEALAIGELWMAKKLYPDAYKDVDVDAQAQDYYQRFYRVNWQSDAAK
>CP024680.1|AYL46659.1|1486532_1487795_+|4-aminobutyrate-transaminase
MNNKNLQQRRLDATPRGVGVMCDFYAQSAENSTITDIEGNQYIDFAAGIAVLNTGHRHPRLVQAVEAQLQAFTHTAYQIVPYESYVSLAEKINAVAPIDGKRKTTFFTTGAEAVENAVKIARAHTGRPGVIAFGGGFHGRTYMTMALTGKVAPYKKGFGPFPGSVYHAPYPSELQGISTADSLKAIERLFKADIDPTQVAAIIFEPVQGEGGFVVAPPEFVAAIRRICDEHGIVMIADEVQSGFARTGQLFAMDHYADKADLMTMAKSLAGGMPLSGVVGKAEIMDAPAPGGLGGTYAGNPLSIAAAHAVLDIIHDEQLCQRAAALGEQLRAALTDAQAGCPELAEVRGLGSMIAAEFCDPVTGEPNASAAQRVQKKALEQGLLLLTCGQYGNVIRFLYPLTIPQDQFAKALQIIKAATK
>CP024680.1|AYL46658.1|1484950_1486426_-|PLP-dependent-aminotransferase-family-protein
MRSLAGDVIKHAFSQQTDEKLHRRLYAAICSCILEGSLKPATRMPPSRDLAGELMLSRNTVLRVYEQLQAEGYISARTSSGTFVTDSVLDNLNLRPNKEPVAAALEDHTRLSARCLELLGNASASPRQWGAFIPGVPDVEHFPHRVLKKIQDRLARRLRPEFLTYDAAGGVNELKEALADYLRTARGVRCSPEQILITEGIHQALDLVTRTLCNPGDHVWIEEPGYWGIKNILRINAVNFSAIPVDEQGMVPPDAGETPPKLIFVTPSHQYPLGSVMSLSRRRQLIFRARETRSWIVEDDYDSEFRFSGQPIPSLQGLEEETPVIYIGTFSKTLYPALRLGYVVLPKSLAAPLKKVHNDLYRGGHLLIQAALAEFIREGYYAAHIRKMRQLYSRRRQMLVELISRQLGEHYLGSFSSNAGLHMILQLPAGSDDAVIAQQANAQGLLVRPLSRYYVNEEKRSGLLLGFASIEEHEMSAAFTRLADIIRVNTV
>CP024680.1|AYL46657.1|1483698_1484907_+|alcohol-dehydrogenase
MRNVTILAACLFTASVSAAESNGEYIARISDCVACHTAEGGAAMAGGKKFPTPVGDIYSTNITPDKAQGIGNYSYEDFEKAVRQGIAKDGHPLYPAMPYPSYAKLSDEDVQALYRYFMHDVTPSAQPNKENAIPWLLSARWPLHIWNWLFTDAPATTVDSAKPDENAALIKRGAYLVEGPGHCGSCHTPRGMAMNEKAYTHADAEYLSGAMIDGWYAPSLRGSGMSEQALKSLLLTGKSKHAAVSGSMAEVVTQSTQYLTDEDATAIAQYLLSLKSAKPETVRAAATTASWSNSPEAGKVTYNRYCSTCHGLEGKGTDDNAPSLVNNPLVMVDDPTPLFRVIAHGAETPTTRGSVSFKMPAYGGMLSDNEMRDVINYVRKTWGEGNGEVSHEDLAGIKKASH
>CP024680.1|AYL46656.1|1481802_1483695_+|NAD(P)/FAD-dependent-oxidoreductase
MAITRRDFLNGVAVTIAAGLTPLEWVRATGKGNAFIDGNYYPPALTGLRGNHPGSFEMAHALGREQKHFDLNALPVEEEYDLVIVGGGISGLAAGCFWRQVAGQNSRVLILDNHDDFGGHAKRNEFTSSGKKLLGYGGSEAFQSPAHNFSPEVQKLMETVGVSVTRLKESFDVNFYPDWQLSRGVFFDKKNFGVTKIVSGDPGRAVSDDIPPDRLNGRKIEDFINDFPLGENDRKALIDLHVRPGDYLPGMTVDEKMEWLDTHSYSEFLATKVGLSKMALLYFQQRSNDFFAIGIEGISCSDARACALPGMEGMGLPPLDGESLADLEEPYVYHFPDGNAGLARLLVRYMLPDALPGNTMEDSVLARLHYEKLDLPENTTRLRLNSTVINAANVQDGVVVTYLRDGKMHRVRGKNTIMAGYNMMIPYLVPEMPEQQQADLKLNVKAPLVYTNVVVKNWQAFKQLGVHEFYSPAAPYSRVKLDYPVSIGGYQHPASPDDPMVIHMVYVPTYPGSNLSAREQFRLGRAYLLGTTFAAHEEMIRSQLQEMFGSTGFDNQRDISAITVNRWAHGYAYYANSLFDDMDKMPEIIERARQPVGRIAIANSDSDWSAYAHTAIDQAWRAVNELKDMG
>CP024680.1|AYL46655.1|1481239_1481713_+|polyketide-cyclase
MKTVKIAVLSLVMLSGYSLAESTSLNTVKEYMAAWNAHDASRAAQYLADDAVYYDAAAGEPINGREKAEKEVIGAFIKAVPDLNWKMVGKPVYDEDTVAFRWEFSGKNSGEWAGSPPTNNPIKFEGVSYIHVKAGKITWQGDYYDSKKLDEELKPVK
>CP024680.1|AYL46654.1|1479800_1481228_+|gamma-aminobutyraldehyde-dehydrogenase
MKTLKHFINGHYVAGSSEDSFELVSPVDGETYAISPNANEAEVEQAYSAAEAAFSIWRKSTPAQRQKALLLLADEIERNVERLVTAQSQETGQLRHFIEKEEIAASCDAIRFFAGAARCLEGKAAGEYSAGFTSTIRREPLGIVGQVTPWNYPFMMAVWKIAPALAAGNTVVLKPSDTTPVSTLLLAELAAPLFPRGAFNVVLGKASTGSLVVSNPKASLVSITGSVRAGLQVAASAAANLTRAHLELGGKAPAVVFADADMDKAIATITTAGFFNAGQDCTAATRILVEQSIYAEFLEKLIQKTKSIKFGPPEDQNALYGALNSRNQLEQVKGFIERLPAHAKIETGGRAGPGPGFYFEPTIVSGLHQNDEAIQHEVFGPVMTIQSFSTDEEALHKANDVEYGLAASVWTRNHGRAQRFSIDLDFGTVWINNHIPLCAEMPHGGFKKSGYGKDLSSYSLEEYTRVKHIMCDISE
>CP024680.1|AYL46664.1|1491870_1492053_+|hypothetical-protein
MAFFFLISRDCRVIKQVDYILLILQRVFYSCSRQGHNGNGLNDMSTQSFSVARIVASIFS
>CP024680.1|AYL46665.1|1492697_1493708_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MVKVGINGFGRIGRNVLRAALGNSDIQIVAINDLTDSKTLAHLLKYDSLLGKLDADVAASEGQLVVNGNSITVFSERDPAKIPWRQREVDIVIEATGFFTERDKAAVHIHSGGAKRVIISAPGKNDDLTIVMGVNDHLYSADKHFVVSNGSCTTNGLAPAAQVLHQHFGIKHGLMNTTHAYTNSQALHDQPEKDLRGARAAALSIVPYSSGAAKALGKVIPELDGRLTGYSLRVPVPVVSIVDLTVTLERDVTEEEVNNAFRNAAATGPLKGILGYSDEPLVSSDYQGDPRSSIIDGLSTLVIGGNMVKILAWYDNEWGFSNRLVDLALLMAKNER
>CP024680.1|AYL46666.1|1493786_1494767_-|AraC-family-transcriptional-regulator
MKKILIIVPDGGMLFESAGIADIMMQANRLHPKSATETCYQVQLATTQPHQVIHGQSGLNLLADHRLHEIDPREPLDTIIITGRGQNPQEGIAVVDWLRLAAPHARRIASICGGAMLLAQTGLLDGRRATTHWKLLETMQAEFPQVRVESGPLYIQDEYIWTSGGVSSGFDLTLALVEEDYGFSLARDVAQDFVMYLRRPGGQLQFSRYNLQHTSTLGPINDLLVWLLENLTADLSVDKLAEKVAMSPRNFTRVFTRETGASPARYVAEARLAAARQRLEQTNETLERIAEQTGFGSSINLRRLFEKQLHLTPGEYRQRFHCRKMA
>CP024680.1|AYL49710.1|1494839_1495481_-|DUF1120-domain-containing-protein
MITKAYAENTVDVSFSAEMIPAACRVSLDNGGTVDYGTLSLSSIRSSSPYLLTPRVIGLHIQCESLRQVAWMVNDEKAETRVRNLIIDSHDDKTSGRHSSDTLFGLGVTSGQKPIGGYLITALAGESAVEGDIASWGYQTGEQERSMWQSAGTALTLISGIMRLTPVDAKNNPVAIRQLTIPLRISAAIASDGLSLQDETELQGEATISLIYL
>CP024680.1|AYL46667.1|1495626_1496178_-|hypothetical-protein
MIRLISLCCGIFFIVSPVVQAQCNIIASQLRHEYGKVRFQDTEPTGQVQWQQLPARQVQVQVRCDVPQPIHIRFDDNDRRGLDFSFGEEGRATVMFSEAFVDNKSSQFVVHHELNKSSESRSQTPIAVLNGDTVELQQHHQPVNGMSATFLLTVIPRVQARSFQVSDQQASTLSLRMTVPERE
>CP024680.1|AYL46668.1|1496174_1498508_-|fimbrial-assembly-protein
MMLSAEPLLFDDGRLKNRGLDAGLSHYFSHAARFSPGEYPVSWVINGRNKRQLMTRFNAQGEPCITPETSRNLGLAYEFNQGCLDYQTLYPTAQLTADPYKNQISFTVPTSALTPESILLRKDIIQGGTSGLLNYNLQSSTTVQSGKHETYQLGLFESGLNLNDWLLRSRHTVSYSDGTRRSQRLYTYVQKTFQSLQQTFQAGEIYARQTLLAIPGLTGLQLFPDSALRPARSGVSVQGIARSAQARVEVYQNGQLIEATQVPEGPFSLDNISMLSTQFPLDVKVTEQDGQLTTFSVPVTALQTPADAPLYGSVALGKVRETVASDESAPWLITGSQGMRISRQATLSGSALASAQYQSAAASLSFIPIPAWSLSLQTTMAQEQYTHHAGSKESLSLRYQLNPSASIQAAWTTTSAGFRELSDAVNHTTSTANSYYNVGGNWAHEHLGLFSLSYSTSSARDHAATPKSWYASWSKNWRWAGHGQINLSATWQRVSGSRTSTQRDDDVFYIRLGLPLGHDRVNLSLRRQGSRTYNDVQTSGQWDDMSYSLSAGRDWQNAQNTISGSFGQNLHYAQMSGYASQTANYWGYGGSLSGGISFNQEGILFSPYAIQESYGALSLNSPLSGIKVSTPQGPVWTDYRGKALVPGLTPWQPSRLNIDVKTLPRHVDLTNGAAELTVSRGAVAFTQFRVSDTRRVLMTVRRIDGKLLSKGKGIVDSDGQYVTNSLEKGLVFFSNLQPGESFFVGDDNGSPMCQLQYSLPPTPPQDGLYEELTGVCE
>CP024680.1|AYL46669.1|1498710_1499415_-|fimbrial-chaperone-protein
MRQPFFFWKVLFILSLFLICVPQVSMATGMQPDSSLLLIQEKESGGSMNVTNTDNIPSLLYTQVINVDGEDDTIKLLPTQPVVRVEGGKTQQVRFILKTEKPLITEHLKRVIFEGIPPKIPGSNKIGITIRQNLPVLIHPEGLPERKDPWTLLTWHKEGNQLKVTNPGPYVVRLAQQFVTLPSKTQFDLGRTYLLPGQHITLSSASSLTADNEVRFVPVSRYGVQVSEFIASLN
>CP024680.1|AYL46670.1|1499514_1500219_-|DUF1120-domain-containing-protein
MKLNKLLVALSLTFISGSVLAAGGDTATLKVTGKLVPGACAVNLDNAGVVDYGTMLMTNLSATEDNQLPEKRINMDIKCNSDRLVAYTLHDERRDSLYNGVIKNATVDGSDIPASSNQFGLGLTNDGETRLGAYTVINWFPDMTYSGSADNLVFIGKRGNSDDWSRTTSGSTVNGVDVAARLHTLGNPDTLTPAAFSELKIPLSIKGVLRKGEELKITDETNLDGEATISLVYL
>CP024680.1|AYL46671.1|1500444_1500750_-|XRE-family-transcriptional-regulator
MHLKYNISNVNARIGRFVRSNRQKMNMSAEELAVELNICQQHVSRFERGQCAFTLEFILRILNVFNIRLSHLVSEVFYEDSQVFSKARNIIQNNSMTKTIN
>CP024680.1|AYL46672.1|1501716_1502406_+|YafY-family-transcriptional-regulator
MTRTERLLELLQILRAQRYPITASTLSERLGISVRSLYRDIKTLQHQGVCIEGGAGIGYIVKSDFHLPPLNLSHEEVNAITLGLNWVSHNTDHDFKIIAKNALAKIHTVISGELKNLIESQSYLIGPSEKNEMFFEDIRNAIKKRKRIKIKYCDKKDSYSSRVIWPIGLVYMESCWLLVAWCEMRNDFRHFRTDKIKEIEQLDSFYSESRAVLLKKWRVKEGISEEKEY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024680_1	1.1\|1491721\|38\|CP024680\|CRISPRCasFinder	1491721-1491758	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	3	0.921

1. spacer 1.1|1491721|38|CP024680|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.921

cggacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******..****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

939635 : 1046016

101

Escherichia_phage(26.42%)

terminase,holin,plate,capsid,protease,tail,portal,tRNA,head,integrase

attL 950540:950559|attR 1050629:1050648

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL46141.1\|939635_939890_+\|tail	phage tail protein	A0A0F7LDZ0	Escherichia_phage	7.0e-17	50.6
AYL46142.1\|939886_940921_-	acyltransferase	NA	NA	NA	NA
AYL46143.1\|943016_944702_-	transporter	NA	NA	NA	NA
AYL46144.1\|944971_945352_+	hypothetical protein	NA	NA	NA	NA
AYL46145.1\|945386_945650_-	glutaredoxin, GrxA family	A0A2I7SAE2	Vibrio_phage	3.8e-26	67.9
AYL46146.1\|945822_946113_+	hypothetical protein	NA	NA	NA	NA
AYL46147.1\|946096_946819_+	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
AYL46148.1\|946878_947781_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.0
AYL46149.1\|947871_948348_+	YbjN domain-containing protein	NA	NA	NA	NA
AYL46150.1\|948781_949894_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
AYL46151.1\|950032_951166_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-29	34.9
950540:950559	attL	NA	NA	NA	NA
AYL46152.1\|951175_952129_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA
AYL46153.1\|952125_952971_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
AYL46154.1\|953030_953519_+	DUF2593 domain-containing protein	NA	NA	NA	NA
AYL46155.1\|953560_954688_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	1.6e-28	27.4
AYL46156.1\|956516_957194_-	amidohydrolase	NA	NA	NA	NA
AYL46157.1\|957210_958071_-	pirin family protein	NA	NA	NA	NA
AYL46158.1\|958179_959091_+	LysR family transcriptional regulator	NA	NA	NA	NA
AYL46159.1\|959170_959389_-	translation initiation factor IF-1	NA	NA	NA	NA
AYL46160.1\|959674_960379_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AYL46161.1\|960423_962145_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	8.1e-16	23.6
AYL46162.1\|962145_963912_-	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	1.4e-23	25.6
AYL46163.1\|964026_964995_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.3
AYL46164.1\|965542_966037_+	leucine-responsive regulatory protein	NA	NA	NA	NA
AYL46165.1\|966171_970233_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.9e-88	49.2
AYL46166.1\|970344_970956_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
AYL46167.1\|970966_972310_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	4.3e-81	40.8
AYL46168.1\|972402_973695_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.5e-94	46.1
AYL46169.1\|973931_976376_+	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.0e-221	50.6
AYL46170.1\|976386_977004_+	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	2.8e-75	59.1
AYL46171.1\|977005_977869_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
AYL46172.1\|977978_978605_-	hydrolase	NA	NA	NA	NA
AYL46173.1\|978990_980139_+	MFS transporter	NA	NA	NA	NA
AYL46174.1\|980352_981774_+	amino acid permease	NA	NA	NA	NA
AYL46175.1\|981817_982615_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.7e-21	26.6
AYL46176.1\|982646_983642_-\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	2.2e-167	87.3
AYL46177.1\|983784_984084_-	XRE family transcriptional regulator	Q1JS29	Enterobacteria_phage	7.4e-34	73.7
AYL46178.1\|984190_984550_+	hypothetical protein	A0A0F7LDH4	Escherichia_phage	1.3e-45	74.4
AYL46179.1\|984530_984731_+	hypothetical protein	S4TNZ7	Salmonella_phage	4.1e-12	67.9
AYL46180.1\|984727_985228_+	replication protein B	M1SV55	Escherichia_phage	5.3e-69	75.3
AYL46181.1\|985291_985624_+	hypothetical protein	NA	NA	NA	NA
AYL46182.1\|985656_985848_+	hypothetical protein	NA	NA	NA	NA
AYL46183.1\|985847_986123_+	hypothetical protein	S4TP00	Salmonella_phage	3.6e-27	64.8
AYL46184.1\|986112_988404_+	replication protein A	Q858T4	Yersinia_virus	0.0e+00	74.3
AYL46185.1\|988403_988748_+	hypothetical protein	NA	NA	NA	NA
AYL46186.1\|988748_988985_+	hypothetical protein	Q6K1F0	Salmonella_virus	3.1e-19	69.2
AYL46187.1\|989052_989484_-	hypothetical protein	S4TUD6	Salmonella_phage	2.7e-69	93.0
AYL46188.1\|989482_989677_+	hypothetical protein	S4TRZ0	Salmonella_phage	3.8e-23	89.1
AYL46189.1\|990090_991074_+	hypothetical protein	NA	NA	NA	NA
AYL46190.1\|991070_991760_+	hypothetical protein	NA	NA	NA	NA
AYL46191.1\|991817_992846_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	3.4e-163	79.7
AYL46192.1\|992845_994615_-	oxidoreductase	Q9T0R3	Escherichia_phage	8.5e-287	81.2
AYL46193.1\|994779_995643_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	1.8e-101	66.6
AYL46194.1\|995674_996835_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	9.6e-130	62.8
AYL46195.1\|996838_997597_+\|terminase	terminase	Q94MJ2	Enterobacteria_phage	1.3e-79	66.7
AYL46196.1\|997694_998195_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
AYL46197.1\|998194_998398_+\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
AYL46198.1\|998388_998610_+	primosomal protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
AYL46199.1\|998593_999103_+	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
AYL46200.1\|999099_999513_+	protein lysB	O80310	Escherichia_phage	7.1e-35	59.1
AYL46201.1\|999412_999658_+\|holin	holin	S4TNY4	Salmonella_phage	7.2e-27	73.1
AYL46202.1\|999620_1000088_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	1.4e-55	69.7
AYL46203.1\|1000080_1000536_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.3e-50	69.1
AYL46204.1\|1000549_1001293_+	hypothetical protein	NA	NA	NA	NA
AYL46205.1\|1001367_1002009_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	1.1e-95	83.1
AYL46206.1\|1002005_1002353_+\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	1.0e-39	69.6
AYL46207.1\|1002768_1003287_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.0e-71	75.6
AYL46208.1\|1003349_1003631_+\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	4.7e-30	79.1
AYL46209.1\|1003663_1003783_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-13	84.6
AYL46210.1\|1003775_1006205_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	2.4e-263	74.4
AYL46211.1\|1006216_1006681_+\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	7.6e-62	74.8
AYL46212.1\|1006683_1007877_+	hypothetical protein	Q6K1G4	Salmonella_virus	2.3e-166	78.4
AYL46213.1\|1007939_1008161_+	transcriptional regulator	S4TNZ3	Salmonella_phage	2.1e-25	72.6
AYL46214.1\|1008469_1010752_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	3.8e-162	42.0
AYL46215.1\|1010811_1011759_-	formate transporter FocA	NA	NA	NA	NA
AYL46216.1\|1012074_1013835_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
AYL46217.1\|1013971_1014664_+	DUF421 domain-containing protein	NA	NA	NA	NA
AYL46218.1\|1014876_1015965_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	5.9e-81	46.2
AYL46219.1\|1016034_1017318_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AYL46220.1\|1017456_1018218_+\|protease	metalloprotease	NA	NA	NA	NA
AYL46221.1\|1018389_1019073_+	(d)CMP kinase	NA	NA	NA	NA
AYL46222.1\|1019186_1020860_+	30S ribosomal protein S1	NA	NA	NA	NA
AYL46223.1\|1021019_1021304_+	integration host factor subunit beta	A7KV42	Bacillus_phage	9.2e-10	39.1
AYL46224.1\|1021510_1023775_+	ComEC family protein	NA	NA	NA	NA
AYL46225.1\|1023811_1025560_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	2.4e-60	30.7
AYL46226.1\|1025556_1026534_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
AYL46227.1\|1026575_1027808_+	hypothetical protein	NA	NA	NA	NA
AYL46228.1\|1027859_1028042_+	protein YcaR	NA	NA	NA	NA
AYL46229.1\|1028038_1028785_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
AYL46230.1\|1028948_1029842_+	hypothetical protein	NA	NA	NA	NA
AYL46231.1\|1029948_1030713_-	envelope biogenesis factor ElyC	NA	NA	NA	NA
AYL46232.1\|1030848_1031652_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
AYL46233.1\|1031644_1032967_+	chromosome partition protein MukF	NA	NA	NA	NA
AYL46234.1\|1032947_1033652_+	chromosome partition protein MukE	NA	NA	NA	NA
AYL46235.1\|1033651_1038112_+	chromosome partition protein MukB	NA	NA	NA	NA
AYL46236.1\|1038357_1040109_+	L,D-transpeptidase	NA	NA	NA	NA
AYL46237.1\|1040286_1040835_+	DUF882 domain-containing protein	A0A0K1LKR7	Rhodobacter_phage	3.5e-05	32.6
AYL46238.1\|1040863_1041511_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AYL46239.1\|1041564_1042755_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
AYL46240.1\|1042938_1044015_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	8.7e-101	53.9
AYL46241.1\|1044615_1046016_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.0e-80	35.9
1050629:1050648	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1265900 : 1272853

uncultured_Caudovirales_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL46447.1\|1265900_1267151_+	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	9.4e-22	94.4
AYL46448.1\|1267286_1267796_-	DedA family protein	NA	NA	NA	NA
AYL46449.1\|1267970_1268213_-	DinI family protein	Q6UAW0	Klebsiella_phage	1.5e-29	77.9
AYL46450.1\|1268600_1269299_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.5e-88	67.2
AYL49695.1\|1269384_1269705_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-19	44.8
AYL46451.1\|1269749_1271039_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.7e-165	70.0
AYL46452.1\|1271051_1271477_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	7.3e-51	70.7
AYL46453.1\|1272358_1272853_+	hypothetical protein	A0A1B0VBR9	Salmonella_phage	3.4e-07	32.4

DBSCAN-SWA_3

1364087 : 1393205

Enterobacteria_phage(40.0%)

tail,integrase

attL 1363885:1363907|attR 1393641:1393663

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1363885:1363907	attL	NA	NA	NA	NA
AYL46539.1\|1364087_1365296_+\|integrase	integrase	I6R9B6	Salmonella_phage	8.7e-182	76.9
AYL46540.1\|1365253_1365490_-	hypothetical protein	A0A1P8DTG1	Proteus_phage	3.3e-13	53.7
AYL46541.1\|1365594_1365786_-	hypothetical protein	NA	NA	NA	NA
AYL46542.1\|1365795_1366035_-	hypothetical protein	M1FPC8	Enterobacteria_phage	5.0e-09	46.2
AYL46543.1\|1365997_1366390_-	protein ninX	A0A1P8DTT2	Salmonella_phage	2.3e-19	44.3
AYL46544.1\|1366394_1366652_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	9.6e-06	53.8
AYL46545.1\|1366651_1366867_-	conjugal transfer protein TraR	A0A0N7C211	Escherichia_phage	4.0e-13	55.6
AYL46546.1\|1366863_1367136_-	hypothetical protein	K7P7M4	Enterobacteria_phage	1.1e-20	61.2
AYL49704.1\|1367138_1367354_-	hypothetical protein	NA	NA	NA	NA
AYL46547.1\|1367359_1367911_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	8.2e-55	58.3
AYL46548.1\|1367907_1368069_-	cruciferin	M1FJ61	Enterobacteria_phage	1.2e-14	69.8
AYL46549.1\|1368059_1368740_-	exonuclease	M9NZE1	Enterobacteria_phage	4.2e-125	93.4
AYL46550.1\|1368736_1369582_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	6.2e-70	61.2
AYL46551.1\|1369600_1369885_-	hypothetical protein	G8C7T1	Escherichia_phage	3.0e-45	88.3
AYL46552.1\|1369892_1370864_-	hypothetical protein	A0A077KCC0	Edwardsiella_phage	3.8e-39	76.3
AYL46553.1\|1370940_1371147_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	3.6e-32	100.0
AYL46554.1\|1371614_1372052_-	hypothetical protein	K7P7N6	Enterobacteria_phage	4.6e-77	97.9
AYL46555.1\|1372135_1372348_-	hypothetical protein	K7P7B4	Enterobacteria_phage	7.3e-28	92.9
AYL46556.1\|1372869_1373355_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
AYL49705.1\|1373391_1374096_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.7e-103	79.1
AYL46557.1\|1374207_1374435_+	transcriptional regulator	Q76H55	Enterobacteria_phage	2.6e-23	70.4
AYL46558.1\|1374465_1375008_+	regulator	M9NZI6	Enterobacteria_phage	1.4e-91	95.6
AYL46559.1\|1375193_1376135_+	replication protein	A5VW95	Enterobacteria_phage	8.3e-55	80.3
AYL46560.1\|1376131_1376821_+	phage replication protein	G8C7U6	Escherichia_phage	1.0e-126	95.6
AYL46561.1\|1376822_1377122_+	protein ren	M1FPD5	Enterobacteria_phage	4.4e-18	53.7
AYL46562.1\|1377555_1377741_+	hypothetical protein	K7P7P5	Enterobacteria_phage	6.0e-26	91.8
AYL46563.1\|1377737_1378322_+	hypothetical protein	K7P6J7	Enterobacteria_phage	1.7e-10	32.8
AYL46564.1\|1379184_1379463_+	hypothetical protein	NA	NA	NA	NA
AYL46565.1\|1379462_1379660_+	hypothetical protein	NA	NA	NA	NA
AYL46566.1\|1379725_1379983_+	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	8.0e-29	80.3
AYL46567.1\|1379982_1380237_+	hypothetical protein	NA	NA	NA	NA
AYL46568.1\|1380436_1380886_+	recombination protein NinB	Q8VNP6	Enterobacteria_phage	7.0e-36	50.7
AYL46569.1\|1380878_1381049_+	hypothetical protein	G8C7V4	Escherichia_phage	7.7e-12	61.8
AYL46570.1\|1381452_1382127_+	hypothetical protein	G0ZNE7	Cronobacter_phage	3.1e-48	45.8
AYL46571.1\|1382235_1382565_+	hypothetical protein	A0A222YZ97	Escherichia_phage	1.6e-21	50.0
AYL46572.1\|1382607_1385100_+\|tail	phage tail tape measure protein	A0A1B1W284	Salmonella_phage	1.7e-86	41.1
AYL46573.1\|1385099_1385597_+	hypothetical protein	F1C5F0	Cronobacter_phage	1.6e-86	88.5
AYL46574.1\|1385596_1386067_+	hypothetical protein	F1C5F1	Cronobacter_phage	1.8e-79	92.9
AYL46575.1\|1386029_1386446_+	hypothetical protein	F1C5F2	Cronobacter_phage	1.2e-69	89.0
AYL46576.1\|1386432_1388910_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	87.6
AYL46577.1\|1391243_1393205_-	hypothetical protein	A0A193GZ69	Enterobacter_phage	9.4e-77	33.8
1393641:1393663	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1397241 : 1407279

Tupanvirus(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL46582.1\|1397241_1398225_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
AYL46583.1\|1398240_1400628_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
AYL46584.1\|1400632_1400932_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
AYL46585.1\|1401085_1402066_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.7e-15	24.8
AYL46586.1\|1402126_1402678_+	glutathione peroxidase	NA	NA	NA	NA
AYL46587.1\|1402677_1403427_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	7.1e-09	30.3
AYL46588.1\|1403504_1403969_+	endopeptidase	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
AYL46589.1\|1404285_1404999_+	EAL domain-containing protein	NA	NA	NA	NA
AYL46590.1\|1405060_1406503_+	hypothetical protein	A0A075BSJ0	Microcystis_phage	7.7e-52	35.3
AYL46591.1\|1406499_1407279_-	heme ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	7.9e-11	26.7

DBSCAN-SWA_5

2327159 : 2336737

Bacillus_phage(28.57%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL47439.1\|2327159_2328563_+	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	3.9e-32	29.6
AYL47440.1\|2328559_2329282_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	9.2e-30	32.7
AYL47441.1\|2329417_2329750_+	DUF1508 domain-containing protein	NA	NA	NA	NA
AYL47442.1\|2329909_2331271_+	U32 family peptidase	Q6DW11	Phage_TP	5.3e-204	92.9
AYL47443.1\|2331540_2333817_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
AYL47444.1\|2333847_2334168_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
AYL47445.1\|2334491_2334716_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
AYL47446.1\|2334790_2336737_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.6e-39	41.3

DBSCAN-SWA_6

2374871 : 2383290

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL47483.1\|2374871_2376905_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.0e-54	27.6
AYL47484.1\|2377111_2377570_+	hypothetical protein	Q9EYF5	Enterobacteria_phage	5.1e-50	68.0
AYL49740.1\|2377612_2378083_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	4.9e-64	76.9
AYL47485.1\|2378129_2378849_-	two-component system response regulator YehT	NA	NA	NA	NA
AYL47486.1\|2378845_2380531_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.3e-281	91.8
AYL47487.1\|2380756_2381488_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.8e-105	93.5
AYL47488.1\|2381539_2381647_+	hypothetical protein	NA	NA	NA	NA
AYL47489.1\|2381627_2382359_-	osmoprotectant uptake system permease	NA	NA	NA	NA
AYL47490.1\|2382342_2383290_-	ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.1

DBSCAN-SWA_7

2912084 : 2923361

Cronobacter_phage(77.78%)

integrase

attL 2918467:2918482|attR 2934984:2934999

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL47936.1\|2912084_2914037_-	hypothetical protein	F1BUJ7	Cronobacter_phage	1.9e-223	80.2
AYL47937.1\|2914419_2914653_-	DUF2732 domain-containing protein	NA	NA	NA	NA
AYL47938.1\|2914720_2915122_-	hypothetical protein	F1BUN2	Cronobacter_phage	2.9e-49	66.9
AYL47939.1\|2915121_2915550_-	hypothetical protein	F1BUN5	Cronobacter_phage	9.6e-27	54.0
AYL47940.1\|2915558_2915732_-	hypothetical protein	NA	NA	NA	NA
AYL47941.1\|2915971_2916433_+	hypothetical protein	NA	NA	NA	NA
AYL47942.1\|2916481_2916985_-	hypothetical protein	F1BUN6	Cronobacter_phage	2.3e-59	71.9
AYL47943.1\|2917041_2917230_-	hypothetical protein	F1BUN7	Cronobacter_phage	7.0e-14	63.8
AYL47944.1\|2917381_2917957_+	Repressor protein CI	F1BUN8	Cronobacter_phage	5.9e-80	74.3
AYL47945.1\|2917956_2918973_+\|integrase	integrase	F1BUN9	Cronobacter_phage	7.8e-176	86.1
2918467:2918482	attL	NA	NA	NA	NA
AYL47946.1\|2918973_2919966_+	hypothetical protein	NA	NA	NA	NA
AYL47947.1\|2920292_2921522_+\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	4.6e-207	86.6
AYL47948.1\|2921804_2923361_+	recombinase family protein	A0A0A7RTP8	Clostridium_phage	3.2e-19	30.0
2934984:2934999	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4733658 : 4747174

Enterobacteria_phage(66.67%)

capsid,integrase

attL 4735057:4735071|attR 4746338:4746352

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL49831.1\|4733658_4735161_-	hypothetical protein	A0A248XCZ8	Klebsiella_phage	5.7e-82	44.0
4735057:4735071	attL	NA	NA	NA	NA
AYL49541.1\|4735308_4736328_-	alcohol dehydrogenase	A0A2K9L7I1	Tupanvirus	3.2e-44	32.0
AYL49542.1\|4736796_4738050_+\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	1.0e-76	41.1
AYL49543.1\|4738087_4739956_-	hypothetical protein	A0A1B3AYT3	Gordonia_phage	2.4e-21	27.8
AYL49544.1\|4740394_4740970_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	5.1e-39	51.4
AYL49545.1\|4740986_4741229_-	hypothetical protein	Q7M294	Enterobacteria_phage	1.4e-19	58.0
AYL49546.1\|4741225_4742029_-\|capsid	capsid protein	Q7M2A2	Enterobacteria_phage	1.1e-12	26.1
AYL49547.1\|4742580_4742847_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	5.2e-23	63.6
AYL49548.1\|4742843_4743443_+	hypothetical protein	Q7M2A7	Enterobacteria_phage	1.1e-49	78.1
AYL49549.1\|4743435_4743735_+	Derepression protein	Q7M2A0	Enterobacteria_phage	1.3e-30	67.7
AYL49550.1\|4743727_4744177_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.4e-44	66.4
AYL49832.1\|4744281_4744509_+	hypothetical protein	NA	NA	NA	NA
AYL49551.1\|4744505_4744826_+	hypothetical protein	NA	NA	NA	NA
AYL49552.1\|4744840_4747174_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.7
4746338:4746352	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP024681

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP024682

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP024680

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection