CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024683	Citrobacter freundii strain UMH13 chromosome, complete genome	1 crisprs	WYL,DinG,cas3,csa3,DEDDh,PD-DExK	0	1	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP024683_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024683_1

1395969-1396092

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024683_1

>merge|CP024683|1|1395969-1396092|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP024683|1|1|1395969-1396092|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP024683.1\|AYL45182.1\|1399130_1399772_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185203
CP024683.1\|AYL42006.1\|1404734_1404968_-\|hypothetical-protein	unknown	unknown	unknown
CP024683.1\|AYL42001.1\|1398077_1399058_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
CP024683.1\|AYL41996.1\|1392265_1393321_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238562
CP024683.1\|AYL42002.1\|1399917_1400469_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185201
CP024683.1\|AYL41991.1\|1384644_1385853_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|379187
CP024683.1\|AYL41990.1\|1382748_1384641_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|379192
CP024683.1\|AYL41998.1\|1394308_1395061_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
CP024683.1\|AYL42003.1\|1400465_1402880_-\|fimbrial-assembly-protein	unknown	unknown	gnl\|CDD\|237937
CP024683.1\|AYL42004.1\|1403001_1403706_-\|fimbrial-chaperone-protein	unknown	unknown	gnl\|CDD\|236632
CP024683.1\|AYL41997.1\|1393307_1394312_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP024683.1\|AYL41999.1\|1396161_1396344_+\|hypothetical-protein	unknown	unknown	unknown
CP024683.1\|AYL42007.1\|1405025_1406006_-\|IS5/IS1182-family-transposase	unknown	unknown	gnl\|CDD\|225581
CP024683.1\|AYL41995.1\|1391096_1392107_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
CP024683.1\|AYL41994.1\|1388954_1391087_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
CP024683.1\|AYL42000.1\|1396988_1397999_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
CP024683.1\|AYL41993.1\|1387478_1388741_+\|4-aminobutyrate-transaminase	unknown	unknown	gnl\|CDD\|182078
CP024683.1\|AYL42005.1\|1403805_1404510_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185203
CP024683.1\|AYL41992.1\|1385896_1387372_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP024683.1\|AYL41989.1\|1382186_1382660_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|377824

Protein	Function_ID	Function_description	E-value
CP024683.1\|AYL45182.1\|1399130_1399772_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	1.77492e-20
CP024683.1\|AYL42001.1\|1398077_1399058_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.93083e-79
CP024683.1\|AYL41996.1\|1392265_1393321_+\|hypothetical-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	3.05588e-82
CP024683.1\|AYL42002.1\|1399917_1400469_-\|hypothetical-protein	gnl\|CDD\|185201	PRK15301, PRK15301, hypothetical protein; Provisional.	5.91435e-08
CP024683.1\|AYL41991.1\|1384644_1385853_+\|alcohol-dehydrogenase	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.63032e-10
CP024683.1\|AYL41990.1\|1382748_1384641_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|379192	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.	7.55319e-06
CP024683.1\|AYL41998.1\|1394308_1395061_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	5.12946e-79
CP024683.1\|AYL42003.1\|1400465_1402880_-\|fimbrial-assembly-protein	gnl\|CDD\|237937	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional.	0
CP024683.1\|AYL42004.1\|1403001_1403706_-\|fimbrial-chaperone-protein	gnl\|CDD\|236632	PRK09918, PRK09918, putative fimbrial chaperone protein; Provisional.	3.53319e-98
CP024683.1\|AYL41997.1\|1393307_1394312_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.57259e-82
CP024683.1\|AYL42007.1\|1405025_1406006_-\|IS5/IS1182-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	7.00081e-54
CP024683.1\|AYL41995.1\|1391096_1392107_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	3.06822e-69
CP024683.1\|AYL41994.1\|1388954_1391087_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.04955e-68
CP024683.1\|AYL42000.1\|1396988_1397999_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	1.94348e-174
CP024683.1\|AYL41993.1\|1387478_1388741_+\|4-aminobutyrate-transaminase	gnl\|CDD\|182078	PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.	0
CP024683.1\|AYL42005.1\|1403805_1404510_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	4.42021e-32
CP024683.1\|AYL41992.1\|1385896_1387372_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.53112e-138
CP024683.1\|AYL41989.1\|1382186_1382660_+\|polyketide-cyclase	gnl\|CDD\|377824	pfam07366, SnoaL, SnoaL-like polyketide cyclase. This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation.	2.9072e-20

>CP024683.1|AYL41998.1|1394308_1395061_+|ABC-transporter-ATP-binding-protein
MIPAALRVNQLSYGYRAPLFEPLTFCCQKGDIWAVLGRNGLGKSTLLDTLTGTLPALGGSIENNGGIGIVAQHSHLPFPYTVSDVVLMGRAQHVKLFAQPSQQDQQRAMQALEQLSIAHLASSSFGSLSGGQQQLVMIARALVTECQTLLLDEPCSALDLANQQVVLQLISDLAHQQRCSILFSTHDPLHALQVASHTLLLLPEGKWRAGPTDSIVTEENLFLAYGLPLRKLSVENHPTPFIAPLFSIRR
>CP024683.1|AYL41997.1|1393307_1394312_+|iron-ABC-transporter-permease
MQLSNRFLPQQPLLIVVVLLLGVSSLCLGQYPLSLSEVFYHLTHYSDAEGIASQVIWTVRLPRILMALLAGGALGLCGATLQGVFHNPLVDPHIIGVTSGAAFGGTLAILLGLSPLLMMGSTFFFGLTALILVYAIAALQGLENTLVLILSGIILSGFFAALVSLIQYQADTEETLPNIVFWLLGSFATANWNKVLLLAVPVGIAATVLFQLRWRINLLSLNDKDARALGVAVVPLRRSVLVCCAFLVAAQVAVSGSIAWVGLVIPHLARLLVGVDHRRLLPCAFWLGGGFMIVVDDIARTLMHAEIPLGIITALFGAPLFAFLLIRTSRREKS
>CP024683.1|AYL41996.1|1392265_1393321_+|hypothetical-protein
MLTFRSFVLVCASMLFAFSAQADRTITDQLGRQVTIPDHVDKVVVLQHQTLNILVQLNAQQDIVGVMSSWKKQLGPEFARFMPTITTLPTPGDLTSVNIESLLAIHPEVVFVANYAPAEMIQQIQNAGIPVVAISLRKDADGQQNKMNPTMADEEQVYNEGLKQGIRLIADVVGRKPQAETLIDYVFAARAKFNASVANIPDAQKVRIYMANPDLMTYGSGKYTGLMMQHAGGLNVAAASVKGARQVALEQVLAWNPQVIFVQDRYPQVVTQIQNDPNWQGIDAVKNHRVWLMPEYAKAWGYPMPEALAIGELWMAKKLYPDAYKDVDVDAQAQDYYQRFYRVNWQSDAAK
>CP024683.1|AYL41995.1|1391096_1392107_+|ABC-transporter-substrate-binding-protein
MKTCHTWLLCVWLAFPALATRQVVDDAGHTVTVPTHVERIADGWFAHHSVLMTLGAGRNIVVTVNHEDNQPWMFKINPSLRQALQIRGTSFNTEDLLARHVDVVFVAKGKGDAQSYSQAGIPALEMAFTDYASMEKSVTTTAEVLGTGQARARATAYNQYLNRVLADVQAKTAKLSADQRPRVLHIQSLNPLKVDGRNTLIDTWITLTGGRNAAGEVDGNMKEVSPERVLYWQPQVIILGAGCGDIASSPYAALFKELDAVKQGNIWRNPAGVFPWDRYGTESALQLQWAASKLHPTLFSGLDMVSVTRDFYRQFFDYSLTPAQAMRILNALPPQE
>CP024683.1|AYL41994.1|1388954_1391087_+|TonB-dependent-siderophore-receptor
MLNNKITPVASGLLTFACLSTAVTAHAEDTVIVSAPATSQSSLSEHEPPASEKKATLGSLGERELIDVPWSVQTLSKKVLDQQQIKDVKDAYRYLPSVQGDGVRPQTRGMQGSVVQNHMIDGLNAVSTTEYSTEQFQNIEVLSGIAGSLYGPANPAGMFNLVSKRPVDTPLHRVTVGQGTGSGTLTSMDFSGPIDAGDRVKYRLNLLNDEGHSYTTDSHVRRQYAGLGLDFQLTDQTVLESNFSYYHYYEKGMPGSFALAKGVHFPAAFDPTDSKYGQSYAGHDDETTTVDMHIKHDFDGNWMLDLGALYQVADRESTAVTNTLTNNQGDYTTTTANSAASRFTINSYLANLTGSVDTGWLTQDIATGMRGFVWKNYNPRNGGTFTLGHSSLNQHPDYPRPPYPDFNDRYHSATTTQHAFLLSDTLHFSPQWSLLLSGSENLFTVSNYNKAGHESSRQKDNGMSGSTSLMYKPVENVTLYTTWADSLQQGDTAPAGARNAGQVLDPYRSRQIEVGAKYAPVKDLLLTAALFEAKRPFAYTNDNGDFAQDGTQKNRGLELMADGHITHNLRVLGGGAWLDPTLHNTAASNADGKQIVGLPRFASNILAIYTIERVPGLDVDTNVHYVGRRATDNANDSWVGSYTTVDIGTRYATRLWNTPTTFRFDITNLTDRHYWTNIVPGALTGYTGAGAASAQLGAPRQAQVSVQVDF
>CP024683.1|AYL41993.1|1387478_1388741_+|4-aminobutyrate-transaminase
MNNKNLQQRRLDATPRGVGVMCDFYAQTAENSTITDIEGNQYIDFAAGIAVLNTGHRHPRLVQAVEAQLQAFTHTAYQIVPYESYVSLAEKINAVAPIDGKRKTTFFTTGAEAVENAVKIARAHTGRPGVIAFGGGFHGRTYMTMALTGKVAPYKKGFGPFPGSVYHAPYPSELQGISTEDSLKAIERLFKADIDPTQVAAIIFEPVQGEGGFVVAPPEFVAAIRRICDEHGIVMIADEVQSGFARTGQLFAMDHYADKADLMTMAKSLAGGMPLSGVVGKAEIMDAPAPGGLGGTYAGNPLSIAAAHAVLDIIHDEQLCQRAAALGEQLRAALTDAQAGCPELAEVRGLGSMIAAEFCDPATGEPNASAAQRVQKKALEQGLLLLTCGQYGNVIRFLYPLTIPQDQFAKALQIIKAATK
>CP024683.1|AYL41992.1|1385896_1387372_-|PLP-dependent-aminotransferase-family-protein
MRSLAGDVIKQAFSQQTDEKLHRRLYAAICSCILEGSLKPATRMPPSRDLAGELALSRNTVLRVYEQLQAEGYISARTSSGTFVTDSVLDNLNLRPNKEPVAAALEDHTRLSARCLELLGNASASPRQWGAFIPGVPDVEHFPHRVLKKIQDRLARRLRPEFLTYDAAGGVNELKEALADYLRTARGVRCSPEQILITEGIHQALDLVTRTLCNPGDYAWIEEPGYWGIKNILRINAVNFSAIPVDEQGMIPPDSGETPPKLIFVTPSHQYPLGSVMSLSRRRQLIFRARETRSWIVEDDYDSEFRFSGQPIPSLQGLEEETPVIYIGTFSKTLYPALRLGYVVLPKSLAAPLKKVHNDLYRGGHLLIQAALAEFIREGYYAAHIRKMRQLYSRRRQMLVELISRQLGEHYLGSFSSNAGLHMILQLPAGSDDAVIAQQANAQGLLVRPLSRYYVNEEKRSGLLLGFASIEEHEMAAAFTRLADIIRANTV
>CP024683.1|AYL41991.1|1384644_1385853_+|alcohol-dehydrogenase
MRNVTILAACLFTASVSAAESNGEYIARISDCVACHTAEGGAAMAGGKKFPTPVGDIYSTNITPDKAQGIGNYSYEDFEKAVRQGIAKDGHPLYPAMPYPSYAKLSDEDVQALYRYFMHDVTPSAQPNKENAIPWLLSARWPLHIWNWLFTDAPATTVDSAKPDDNAALIKRGAYLVEGPGHCGSCHTPRGMAMNEKAYTHADAEYLSGAMIDGWYAPSLRGSGMSEQALKSLLLTGKSKHAAVSGSMAEVVTQSTQYLTDEDATAIAQYLLSLKSAKPETVRAAATTASWSNSPEAGKVTYNRYCSTCHGLEGKGTDDNAPSLVNNPLVMVDDPTPLFRVIAHGAETPTTRGSVSFKMPAYGGMLSDNEMRDVINYVRKTWGEGNGEVSHEDLAGIKKASH
>CP024683.1|AYL41990.1|1382748_1384641_+|NAD(P)/FAD-dependent-oxidoreductase
MAITRRDFLNGVAVTIAAGLTPLEWVRAAGKGNAFIDGNYYPPALTGLRGNHPGSFEMAHALGREHKHFDLNALPVEEEYDLVIVGGGISGLAAGCFWRQVAGQNSRILILDNHDDFGGHAKRNEFTSSGKKLLGYGGSEAFQSPAHNFSPEVQKLMETVGVSVTRLKESFDVNFYPDWQLSRGVFFDKKNFGVTKIVSGDPGRAVSDDIPPDRLNGRKIEDFINDFPLGENDRKALIDLHVRPGDYLPGMTVDEKMEWLDTHSYSEFLATKVGLSKMALLYFQQRSNDFFAIGIEGISCSDARACALPGMEGMGLPPLDGESLADLEEPYVYHFPDGNAGLARLLVRYMLPDALPGNTMEDSVLARLHYEKLDLPENTTRLRLNSTVINAANVQDGVVVTYLRDGKMHRVRGKNTIMAGYNMMIPYLVPEMPEQQQADLKLNVKAPLVYTNVVVKNWQAFKQLGVHEFYSPAAPYSRVKLDYPVSIGGYQHPASPDDPMVIHMVYVPTYPGSNLSAREQFRLGRAYLLGTTFAAHEEMIRSQLQEMFGSTGFDNQRDISAITVNRWAHGYAYYANSLFDDMDKMPEIIERARQPVGRIAIANSDSDWSAYAHTAIDQAWRAVNELKDMG
>CP024683.1|AYL41989.1|1382186_1382660_+|polyketide-cyclase
MKTLKIAVLSLVMLSGYSLAESTSLNTVKEYMAAWNAHDASRAAQYLAEDAVYYDAAAGEPINGREKAEKEVIGAFIKAVPDLSWKMVGKPVYDEDTVAFRWEFSGKNSGEWAGSPPTNNPIKFEGVSYIHVKAGKITWQGDYYDSKKLDEELKPVK
>CP024683.1|AYL41999.1|1396161_1396344_+|hypothetical-protein
MAFFFLISRDCRVIKQVDYILLILQRVFYSCSRQGHNGNGLNDMSTQSFSVARIVASIFS
>CP024683.1|AYL42000.1|1396988_1397999_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MVKVGINGFGRIGRNVLRAALGNSDIQIVAINDLTDSNTLAHLLKYDSLLGKLDADVAASEGQLVVNGNSITVFSERDPAKIPWRQREVDIVIEATGFFTERDKAAVHIHSGGAKRVIISAPGKNDDLTIVMGVNDHLYSADKHFVVSNGSCTTNGLAPAAQVLHQHFGIKHGLMNTTHAYTNSQALHDQPEKDLRGARAAALSIVPYSSGAAKALGKVIPELDGRLTGYSLRVPVPVVSIVDLTVTLERDVTEEEVNNAFRNAAATGPLKGILGYSDEPLVSSDYQGDPRSSIIDGLSTLVIGGNMVKILAWYDNEWGFSNRLVDLALLIAKNER
>CP024683.1|AYL42001.1|1398077_1399058_-|AraC-family-transcriptional-regulator
MKKILIIVPDGGMLFESAGIADIMMQANRLHPKSATETCYQVQLATTQPHQVIHGQSGLNLLADHRLHEIDPREPLDTIIITGRGQNPQEGIAVVDWLRLAAPHARRIASICGGAMLLAQTGLLDGRRATTHWKLLETMQAEFPQVRVESGPLYIQDEHIWTSGGVSSGFDLTLALVEEDYGFSLARDVAQDFVMYLRRPGGQLQFSRYNLQHTSTLGPINDLLVWLLENLTADLSVDKLAEKVAMSPRNFTRVFTRETGASPARYVAEARLAAARQRLEQTNETLERIAEQTGFGSSINLRRLFEKQLHLTPGEYRQRFHCRKMA
>CP024683.1|AYL45182.1|1399130_1399772_-|DUF1120-domain-containing-protein
MITKAYAENTVDVSFSAEMIPAACRVSLDNGGTVDYGTLSLSSIRSSSPYLLTPRVIGLHIQCESLRQVAWMVNDEKAETRVRNLIIDSHDDKTSGRHSSDTLFGLGVTSGQKPIGGYLITALAGESAVEGDIASWGYQTGEQERSMWQSAGTALTLISGIMRLTPVDAKNNPVAIRQLTIPLRISAAIASDGLSLQDETELQGEATISLIYL
>CP024683.1|AYL42002.1|1399917_1400469_-|hypothetical-protein
MIRLISLCCGIYFIVSPVVQAQCNIIASQLRHEYGKVRFQDTEPTGQVQWQQLPARQVQVQVRCDVPQPIHIRFDDNDRRGLDFSFGEEGRATVMFSEAFVDNKSSQFVVHHEFNKSSESQSQTPIAVLNGDTVELQQHHQPVNGMSATFLLTVIPRVQARSFQVSDQQASTLSLRMTVPERE
>CP024683.1|AYL42003.1|1400465_1402880_-|fimbrial-assembly-protein
MPFNLIRTLPVHRYAYYLFLGLLGSYSMMLSAEPLLFDDGRLKNRGLDAGLSHYFSHAARFSPGEYPVSWVINGRNKRQLMTRFNAQGEPCITPETSRHLGLAHEFDQGCLDYQTHYPAAQLTADPYKNQISFTVPTSALTPESILLRKDIIQGGTSGLINYNLQSSTTVQSGKHETYQLGLFESGLNLNDWLLRSRHTVSYSDGTRRSQRLYTYVQKTFQSLQQTFQVGEIYARQTLLAIPGLTGLQLFPDSALRPARSGVSVQGIARSAQARVEVYQNGQLIEATQVPEGPFSLDNISMLSTQFPLDVKVTEQDGQLTTFSVPVTALQTPADAPLYGSVALGKVRETVASDESAPWLITGSQGMRISRQATLSGSALASAQYQSAAASLSIIPIPAWSLSLQTTMAQEHYTHHAGSKESLSLRYQLNPSASIQAAWTTTSAGFRELSDAVNHTTSTANSYYNVGGNWAHEYLGLFSLSYSTSSAHDHAATPKSWYASWSKNWRWAGHGQINLSATWQRVSGSRTSTQRDDDVFYIRLGLPLGHDRVNLSLRRQGSRTYNDVQTSGQWDDMSYSLSAGRDWQNAQNTISGSFGQNLHYAQMSGYASQTANYWGYGGSLSGGISVNQEGILFSPYAIQESYGALSLNSPLSGIKVSTPQGPVWTDYRGKALVPGLTPWQPSRLNIDVKTLPRHVDLTNGAAELTVSRGAVAFTQFRVSDTRRVLMTVRRTDGKLLSKGKGIVDSDGQYVTNSLEKGLVFFSNLQPGESFFVGDDNGSPMCQLQYSLPPTPPQDGLYEELTGVCE
>CP024683.1|AYL42004.1|1403001_1403706_-|fimbrial-chaperone-protein
MRQPFFFWKVLFILSLFLICVPQVSMATGMQPDSSLLLIQEKESGGSMNVTNTDNIPSLLYTQVINVDGEDDTIKLLPTQPVVRVEGGKTQQVRFILKTEKPLITEHLKRVIFEGIPPKIPGSNKIGITIRQNLPVLIHPEGLPERKDPWTLLTWHKEGNQLKVTNPGPYVVRLAQQFVTLPSKTQFDLGRTYLLPGQHITLSSASSLTADNEVRFVPVSRYGVQVSEFIASLN
>CP024683.1|AYL42005.1|1403805_1404510_-|DUF1120-domain-containing-protein
MKLNKLLVALSLTFISGSALAAGGDTATLKVTGKLVPGACTVNLDNAGVVDYGTMLMTNLSATEDNQLPEKRINMGIKCNSDRLVAYTLHDERRDSLYNGVIKNATVDGGDIPASSNQFGLGLTNDGEARLGAYTVINWFPDMTYSGSADNLVFIGSKGNSDDWSRTTSGSTVNGVDVAARLHTLGNPDTLTPAAFSELKIPLSIKGVLRKGEDLKITDETNLDGEATISLVYL
>CP024683.1|AYL42006.1|1404734_1404968_-|hypothetical-protein
MFAGKKSAQIREILISESAWEEMTCLFAPSLEFILRILNVFNIRLSHLVSEVFYEDTQVFSKARSIIQNNSMTKTIN
>CP024683.1|AYL42007.1|1405025_1406006_-|IS5/IS1182-family-transposase
MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGRVKTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024683_1	1.1\|1396012\|38\|CP024683\|CRISPRCasFinder	1396012-1396049	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	3	0.921

1. spacer 1.1|1396012|38|CP024683|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.921

cggacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******..****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1205548 : 1214209

uncultured_Caudovirales_phage(37.5%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL41826.1\|1205548_1206139_+	DUF4326 domain-containing protein	A0A0S0N995	Pseudomonas_phage	4.4e-14	43.0
AYL41827.1\|1207201_1208370_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	7.1e-165	89.1
AYL41828.1\|1208653_1209163_-	DedA family protein	NA	NA	NA	NA
AYL41829.1\|1209337_1209580_-	DinI family protein	Q6UAW0	Klebsiella_phage	1.5e-29	77.9
AYL41830.1\|1209658_1209892_+	DNA polymerase V	A0A222YZE2	Escherichia_phage	6.6e-22	81.8
AYL41831.1\|1209968_1210667_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.8e-89	67.7
AYL45169.1\|1210752_1211073_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	3.2e-19	44.8
AYL41832.1\|1212408_1212834_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	7.3e-51	70.7
AYL41833.1\|1213723_1214209_+	hypothetical protein	A0A1B0VBR9	Salmonella_phage	3.0e-08	34.9

DBSCAN-SWA_2

1309057 : 1326995

Salmonella_phage(15.38%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL41921.1\|1309057_1310533_-	hypothetical protein	A0A192Y7W8	Salmonella_phage	1.1e-34	26.3
AYL41922.1\|1310596_1310719_+	ABC transporter	NA	NA	NA	NA
AYL41923.1\|1310757_1311738_-\|transposase	IS5/IS1182 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1
AYL41924.1\|1311783_1312653_-	glycosyltransferase	U5P087	Shigella_phage	3.3e-151	92.6
AYL41925.1\|1312649_1313012_-	GtrA family protein	B9UDL8	Salmonella_phage	3.6e-43	71.7
AYL41926.1\|1313059_1313320_+	hypothetical protein	NA	NA	NA	NA
AYL41927.1\|1313407_1315336_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	9.7e-127	36.8
AYL41928.1\|1315339_1315882_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	8.2e-15	32.9
AYL41929.1\|1315978_1316176_+	50S ribosomal protein L35	NA	NA	NA	NA
AYL41930.1\|1316231_1316588_+	50S ribosomal protein L20	NA	NA	NA	NA
AYL41931.1\|1316957_1317941_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
AYL41932.1\|1317956_1320344_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
AYL41933.1\|1320348_1320648_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
AYL41934.1\|1320801_1321782_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.7e-15	24.8
AYL41935.1\|1321842_1322394_+	glutathione peroxidase	NA	NA	NA	NA
AYL41936.1\|1322393_1323143_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	30.3
AYL41937.1\|1323220_1323685_+	endopeptidase	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
AYL41938.1\|1324001_1324715_+	EAL domain-containing protein	NA	NA	NA	NA
AYL41939.1\|1324776_1326219_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	7.7e-52	35.3
AYL41940.1\|1326215_1326995_-	heme ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	1.2e-11	27.3

DBSCAN-SWA_3

1654248 : 1678103

Escherichia_phage(88.0%)

terminase,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL42233.1\|1654248_1654686_-	type II toxin-antitoxin system HicB family antitoxin	F1C593	Cronobacter_phage	3.3e-30	55.6
AYL42234.1\|1654711_1654888_-	addiction module toxin, HicA family	NA	NA	NA	NA
AYL42235.1\|1655355_1655901_-\|tail	phage tail protein	F1BUK2	Cronobacter_phage	2.0e-16	29.8
AYL42236.1\|1657507_1658134_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	6.0e-94	76.0
AYL42237.1\|1658117_1659344_-	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	6.3e-164	72.5
AYL42238.1\|1659365_1659857_+	hypothetical protein	NA	NA	NA	NA
AYL42239.1\|1659859_1660207_-	hypothetical protein	A0A0U2I1S2	Escherichia_phage	9.2e-44	76.5
AYL45190.1\|1660209_1660887_-\|plate	phage baseplate protein	A0A0U2JTX5	Escherichia_phage	1.7e-81	64.3
AYL42240.1\|1660922_1661927_-	hypothetical protein	A0A0U2QL72	Escherichia_phage	9.3e-97	53.0
AYL42241.1\|1661926_1662190_-	hypothetical protein	A0A0U2JGJ3	Escherichia_phage	1.7e-26	60.0
AYL42242.1\|1662189_1662849_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	4.2e-90	74.0
AYL42243.1\|1662849_1664742_-	lytic transglycosylase	A0A0U2QV45	Escherichia_phage	1.3e-168	48.9
AYL42244.1\|1664806_1665424_-	hypothetical protein	A0A0U2S634	Escherichia_phage	1.5e-73	65.2
AYL42245.1\|1665423_1665852_-	hypothetical protein	A0A0U2S616	Escherichia_phage	1.8e-65	85.9
AYL42246.1\|1665877_1667206_-	hypothetical protein	A0A0U2KD19	Escherichia_phage	2.1e-168	68.5
AYL42247.1\|1667205_1668156_-	hypothetical protein	A0A0U2SH76	Escherichia_phage	9.3e-123	72.1
AYL42248.1\|1668142_1668571_-	hypothetical protein	A0A0U2RTA8	Escherichia_phage	1.4e-41	59.6
AYL42249.1\|1668567_1669023_-	hypothetical protein	A0A0U2S646	Escherichia_phage	2.4e-44	62.0
AYL42250.1\|1669022_1669493_-	hypothetical protein	A0A0U2SAX6	Escherichia_phage	1.2e-54	68.6
AYL42251.1\|1669558_1670587_-	hypothetical protein	A0A0U2QQI2	Escherichia_phage	2.4e-148	74.8
AYL42252.1\|1670597_1671209_-	hypothetical protein	A0A0U2S600	Escherichia_phage	2.2e-72	66.3
AYL42253.1\|1671201_1672512_-	NUDIX hydrolase	A0A0U2QW61	Escherichia_phage	4.9e-130	69.7
AYL42254.1\|1672492_1673323_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	3.1e-122	76.4
AYL42255.1\|1673282_1674704_-	hypothetical protein	A0A0U2S5X9	Escherichia_phage	1.4e-210	74.7
AYL45191.1\|1674719_1675850_-\|terminase	terminase	A0A0U2JTW9	Escherichia_phage	1.6e-169	75.6
AYL42256.1\|1676041_1677166_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	7.8e-68	50.4
AYL45192.1\|1677169_1677379_-	hypothetical protein	NA	NA	NA	NA
AYL42257.1\|1677398_1678103_-	hypothetical protein	A0A1J0ME72	Mycobacterium_phage	2.9e-20	32.1

DBSCAN-SWA_4

1693749 : 1703962

Escherichia_phage(57.14%)

integrase

attL 1697579:1697592|attR 1712247:1712260

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL42283.1\|1693749_1696626_+	exodeoxyribonuclease	A0A0U2I1R6	Escherichia_phage	5.4e-206	41.2
AYL42284.1\|1696637_1697747_+	enterohemolysin	A0A0U2S5Y9	Escherichia_phage	1.7e-128	64.9
1697579:1697592	attL	NA	NA	NA	NA
AYL42285.1\|1697784_1698237_+	hypothetical protein	NA	NA	NA	NA
AYL42286.1\|1698233_1698542_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	7.4e-29	68.0
AYL42287.1\|1698538_1699204_+	morphogenetic protein	R9VWB9	Serratia_phage	2.5e-37	42.3
AYL42288.1\|1699200_1699650_+	hypothetical protein	NA	NA	NA	NA
AYL45194.1\|1699689_1699875_+	hypothetical protein	A0A0U2QL97	Escherichia_phage	1.5e-13	60.7
AYL42289.1\|1699874_1700132_+	hypothetical protein	NA	NA	NA	NA
AYL45195.1\|1700122_1702111_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	8.4e-182	48.6
AYL42290.1\|1702107_1702500_+	hypothetical protein	NA	NA	NA	NA
AYL42291.1\|1702581_1702842_+	hypothetical protein	NA	NA	NA	NA
AYL42292.1\|1702819_1703962_+\|integrase	integrase	O21925	Phage_21	6.7e-75	42.3
1712247:1712260	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1963005 : 2048639

Klebsiella_phage(28.85%)

terminase,holin,protease,tail,head,tRNA,integrase,portal,capsid

attL 1996483:1996510|attR 2048770:2048797

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL42519.1\|1963005_1963701_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	A0A0R6PI74	Moraxella_phage	5.8e-05	35.4
AYL42520.1\|1963759_1965670_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	9.1e-93	33.1
AYL42521.1\|1965810_1966155_+	RidA family protein	NA	NA	NA	NA
AYL42522.1\|1966161_1966341_-	YoaH family protein	NA	NA	NA	NA
AYL42523.1\|1966421_1967786_+	aminodeoxychorismate synthase component 1	S4VNU7	Pandoravirus	2.9e-40	40.2
AYL42524.1\|1967789_1968368_+	CoA pyrophosphatase	NA	NA	NA	NA
AYL42525.1\|1968551_1969916_+	L-serine ammonia-lyase	NA	NA	NA	NA
AYL42526.1\|1970046_1971648_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
AYL42527.1\|1971654_1973214_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	5.1e-41	45.4
AYL42528.1\|1973673_1974636_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
AYL42529.1\|1974694_1975495_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
AYL42530.1\|1975507_1976359_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
AYL42531.1\|1976419_1976878_+	DUF986 domain-containing protein	NA	NA	NA	NA
AYL42532.1\|1977256_1977877_+	hypothetical protein	NA	NA	NA	NA
AYL42533.1\|1977873_1978683_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
AYL42534.1\|1978746_1980492_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
AYL42535.1\|1980711_1980921_-	cold-shock protein CspC	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
AYL42536.1\|1980933_1981077_-	DUF2627 domain-containing protein	NA	NA	NA	NA
AYL42537.1\|1981038_1981221_+	hypothetical protein	NA	NA	NA	NA
AYL42538.1\|1981713_1981998_-	hypothetical protein	NA	NA	NA	NA
AYL42539.1\|1982072_1982216_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA
AYL42540.1\|1982380_1982620_+	hypothetical protein	NA	NA	NA	NA
AYL42541.1\|1982734_1983526_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
AYL42542.1\|1983700_1985074_+	MFS transporter	NA	NA	NA	NA
AYL42543.1\|1985120_1986002_-\|protease	protease HtpX	NA	NA	NA	NA
AYL42544.1\|1986194_1988243_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.2e-87	33.7
AYL42545.1\|1988262_1988949_-	RNA chaperone ProQ	NA	NA	NA	NA
AYL42546.1\|1989045_1989543_-	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA
AYL42547.1\|1989671_1990955_+	paraquat-inducible protein A	NA	NA	NA	NA
AYL42548.1\|1990923_1993557_+	MCE family protein	NA	NA	NA	NA
AYL42549.1\|1993636_1995058_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AYL42550.1\|1995155_1995395_+	DUF1480 domain-containing protein	NA	NA	NA	NA
AYL42551.1\|1995497_1995689_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AYL42552.1\|1995689_1996331_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	6.6e-56	50.5
1996483:1996510	attL	NA	NA	NA	NA
AYL45210.1\|1996671_1996770_+	hypothetical protein	S4TND2	Salmonella_phage	1.8e-05	85.7
AYL42553.1\|1996882_1997554_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	2.2e-78	59.0
AYL42554.1\|1997904_1998228_-	hypothetical protein	NA	NA	NA	NA
AYL42555.1\|1998303_1998771_-	hypothetical protein	NA	NA	NA	NA
AYL45211.1\|1999006_1999186_+	hypothetical protein	NA	NA	NA	NA
AYL42556.1\|1999286_1999700_+	hypothetical protein	NA	NA	NA	NA
AYL42557.1\|1999995_2000385_-	DNA polymerase V	Q1MVE7	Enterobacteria_phage	3.0e-51	72.1
AYL42558.1\|2000705_2000948_+	DinI family protein	Q6UAW0	Klebsiella_phage	1.2e-29	79.2
AYL42559.1\|2001117_2002110_+	hypothetical protein	A0A1V0SAH6	Catovirus	2.6e-06	31.5
AYL42560.1\|2002182_2002779_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	5.0e-58	56.5
AYL42561.1\|2002778_2005358_-	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	2.5e-61	49.5
AYL42562.1\|2005398_2008803_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	70.2
AYL42563.1\|2008875_2009553_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	5.9e-79	70.2
AYL42564.1\|2009450_2010185_-\|tail	phage tail protein	A5LH41	Enterobacteria_phage	8.8e-113	76.2
AYL42565.1\|2010196_2010892_-\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	4.2e-96	72.3
AYL42566.1\|2010900_2011233_-\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.4e-41	67.9
AYL45212.1\|2011233_2014536_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	66.4
AYL45213.1\|2014535_2014763_-	hypothetical protein	Q6UAW9	Klebsiella_phage	9.0e-24	65.3
AYL42567.1\|2014783_2015146_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	4.8e-27	56.8
AYL42568.1\|2015208_2015691_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	2.3e-61	80.6
AYL42569.1\|2015724_2016126_-	hypothetical protein	Q6UAX1	Klebsiella_phage	4.4e-58	86.5
AYL42570.1\|2016122_2016512_-	hypothetical protein	Q6UAX2	Klebsiella_phage	1.3e-43	66.9
AYL45214.1\|2016827_2017145_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	2.1e-39	79.6
AYL42571.1\|2017601_2018888_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	1.5e-211	89.0
AYL42572.1\|2018960_2019881_-	serine peptidase	Q6UAX7	Klebsiella_phage	2.7e-135	80.1
AYL42573.1\|2019917_2021177_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	5.8e-221	89.8
AYL42574.1\|2021176_2021356_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.3e-13	71.2
AYL42575.1\|2021349_2023077_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	92.8
AYL42576.1\|2023073_2023580_-\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	1.0e-83	93.9
AYL42577.1\|2023691_2023892_-	hypothetical protein	Q6UAR8	Klebsiella_phage	6.5e-10	87.9
AYL42578.1\|2023888_2024251_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.3e-56	85.8
AYL45215.1\|2024529_2025069_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	3.8e-44	80.0
AYL42579.1\|2025426_2025600_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
AYL42580.1\|2025803_2026034_-	hypothetical protein	NA	NA	NA	NA
AYL45216.1\|2026107_2026296_-	cold-shock protein	NA	NA	NA	NA
AYL42581.1\|2026306_2026519_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	7.8e-22	72.9
AYL42582.1\|2026908_2027442_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.8e-06	40.9
AYL42583.1\|2027423_2027969_-	lysozyme	K7PM52	Enterobacteria_phage	3.2e-99	95.0
AYL42584.1\|2027940_2028219_-\|holin	holin	K7PGZ9	Enterobacteria_phage	5.1e-45	97.8
AYL42585.1\|2028374_2028563_-	hypothetical protein	NA	NA	NA	NA
AYL42586.1\|2029486_2029702_-	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	5.9e-25	80.6
AYL42587.1\|2029998_2030211_+	cold-shock protein	NA	NA	NA	NA
AYL42588.1\|2030534_2030930_-	antitermination protein	Q8W638	Enterobacteria_phage	3.3e-37	60.0
AYL42589.1\|2030944_2031985_-	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	1.7e-101	52.0
AYL42590.1\|2031981_2032341_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	4.0e-42	64.4
AYL42591.1\|2032343_2032544_-	hypothetical protein	H6WRY8	Salmonella_phage	1.1e-17	63.1
AYL42592.1\|2032671_2032911_-	hypothetical protein	H6WRY6	Salmonella_phage	5.7e-21	59.7
AYL42593.1\|2033444_2034671_+	hypothetical protein	NA	NA	NA	NA
AYL42594.1\|2034716_2035019_-	hypothetical protein	NA	NA	NA	NA
AYL42595.1\|2035395_2036139_+	hypothetical protein	NA	NA	NA	NA
AYL42596.1\|2036679_2038920_+	NTPase	NA	NA	NA	NA
AYL42597.1\|2039101_2040460_-	hypothetical protein	NA	NA	NA	NA
AYL42598.1\|2040684_2041110_-	hypothetical protein	NA	NA	NA	NA
AYL42599.1\|2041165_2041576_-	hypothetical protein	M9NZE4	Enterobacteria_phage	2.4e-06	63.6
AYL42600.1\|2041695_2042490_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	7.2e-68	55.2
AYL42601.1\|2042544_2043099_-	hypothetical protein	NA	NA	NA	NA
AYL42602.1\|2043101_2043317_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	1.3e-16	54.8
AYL42603.1\|2043418_2043808_+	transcriptional regulator	A0A0M4R5D1	Salmonella_phage	3.5e-36	60.8
AYL42604.1\|2044036_2044252_+	hypothetical protein	NA	NA	NA	NA
AYL45217.1\|2044309_2044636_+	transcriptional regulator	NA	NA	NA	NA
AYL42605.1\|2044777_2047258_+	exonuclease	K7P6V4	Enterobacteria_phage	5.6e-111	38.7
AYL42606.1\|2047303_2047582_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.9e-12	40.3
AYL42607.1\|2047559_2048639_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.5e-110	55.6
2048770:2048797	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2238946 : 2246981

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL42807.1\|2238946_2240053_-	aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	2.9e-43	31.0
AYL42808.1\|2240056_2240590_-	N-acetyltransferase	NA	NA	NA	NA
AYL42809.1\|2240579_2240978_-	WxcM-like domain-containing protein	NA	NA	NA	NA
AYL42810.1\|2240984_2241854_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	5.2e-112	68.8
AYL42811.1\|2241853_2242939_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.4e-100	53.4
AYL42812.1\|2243312_2244206_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.3e-45	40.3
AYL42813.1\|2244443_2245439_-	UDP-N-acetylglucosamine 4-epimerase	A0A0K1L6Z1	Scale_drop_disease_virus	1.1e-09	28.5
AYL42814.1\|2245586_2246981_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.7e-19	33.8

DBSCAN-SWA_7

2288824 : 2298403

Bacillus_phage(28.57%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL42844.1\|2288824_2290228_+	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	5.0e-32	29.2
AYL42845.1\|2290224_2290947_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	9.2e-30	32.7
AYL42846.1\|2291082_2291415_+	DUF1508 domain-containing protein	NA	NA	NA	NA
AYL42847.1\|2291574_2292936_+	U32 family peptidase	Q6DW11	Phage_TP	4.1e-204	92.9
AYL42848.1\|2293206_2295483_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
AYL42849.1\|2295513_2295834_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
AYL42850.1\|2296157_2296382_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
AYL42851.1\|2296456_2298403_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.6e-39	41.3

DBSCAN-SWA_8

2336639 : 2345058

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL42888.1\|2336639_2338673_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	5.2e-54	27.6
AYL42889.1\|2338879_2339338_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	5.6e-49	68.0
AYL45227.1\|2339380_2339851_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	4.9e-64	76.9
AYL42890.1\|2339897_2340617_-	two-component system response regulator YehT	NA	NA	NA	NA
AYL42891.1\|2340613_2342299_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-281	91.6
AYL42892.1\|2342524_2343256_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.4e-105	93.0
AYL42893.1\|2343307_2343415_+	hypothetical protein	NA	NA	NA	NA
AYL42894.1\|2343395_2344127_-	ABC transporter permease	NA	NA	NA	NA
AYL42895.1\|2344110_2345058_-	ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.1

DBSCAN-SWA_9

4783282 : 4791856

Enterobacteria_phage(88.89%)

capsid,integrase

attL 4777517:4777530|attR 4799527:4799540

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4777517:4777530	attL	NA	NA	NA	NA
AYL45019.1\|4783282_4783858_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.9e-38	50.8
AYL45020.1\|4783874_4784117_-	hypothetical protein	Q7M294	Enterobacteria_phage	1.1e-19	59.3
AYL45021.1\|4784113_4784917_-\|capsid	capsid protein	Q7M2A2	Enterobacteria_phage	5.1e-13	26.5
AYL45022.1\|4785469_4785736_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.8e-24	64.8
AYL45023.1\|4785732_4786287_+	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	3.9e-36	73.9
AYL45024.1\|4786279_4786579_+	Derepression protein	Q7M2A0	Enterobacteria_phage	5.3e-32	69.7
AYL45025.1\|4786571_4787021_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.7e-45	67.3
AYL45326.1\|4787125_4787353_+	hypothetical protein	NA	NA	NA	NA
AYL45026.1\|4787349_4787670_+	hypothetical protein	NA	NA	NA	NA
AYL45027.1\|4787681_4790015_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.0
AYL45028.1\|4790590_4791856_+\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	8.2e-82	43.0
4799527:4799540	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage