CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024677	Citrobacter freundii strain UMH16 chromosome, complete genome	2 crisprs	WYL,DinG,cas3,csa3,DEDDh,PD-DExK	0	2	11	0
CP024678	Citrobacter freundii strain UMH16 plasmid pUMH16, complete sequence	0 crisprs	DEDDh,csa3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP024677_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024677_1

1567479-1567602

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024677_1

>merge|CP024677|1|1567479-1567602|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP024677|1|1|1567479-1567602|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP024677.1\|AYL56484.1\|1565820_1566573_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
CP024677.1\|AYL56482.1\|1563777_1564833_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238562
CP024677.1\|AYL56479.1\|1559500_1560709_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|379187
CP024677.1\|AYL56483.1\|1564819_1565824_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP024677.1\|AYL56494.1\|1578371_1578623_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184255
CP024677.1\|AYL56490.1\|1573197_1575612_-\|fimbrial-assembly-protein	unknown	unknown	gnl\|CDD\|237937
CP024677.1\|AYL56480.1\|1560752_1562228_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP024677.1\|AYL56478.1\|1557604_1559497_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|379192
CP024677.1\|AYL56486.1\|1567671_1567854_+\|hypothetical-protein	unknown	unknown	unknown
CP024677.1\|AYL56488.1\|1570809_1571790_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
CP024677.1\|AYL56476.1\|1555602_1557030_+\|gamma-aminobutyraldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143411
CP024677.1\|AYL56492.1\|1576537_1577242_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185203
CP024677.1\|AYL56477.1\|1557041_1557515_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|377824
CP024677.1\|AYL56489.1\|1572649_1573201_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185201
CP024677.1\|AYL56487.1\|1568286_1569434_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
CP024677.1\|AYL56485.1\|1566559_1567282_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270259
CP024677.1\|AYL59818.1\|1571862_1572504_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185203
CP024677.1\|AYL56493.1\|1577467_1577773_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP024677.1\|AYL56481.1\|1562334_1563597_+\|4-aminobutyrate-transaminase	unknown	unknown	gnl\|CDD\|182078
CP024677.1\|AYL56491.1\|1575733_1576438_-\|fimbrial-chaperone-protein	unknown	unknown	gnl\|CDD\|236632

Protein	Function_ID	Function_description	E-value
CP024677.1\|AYL56484.1\|1565820_1566573_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	4.26889e-80
CP024677.1\|AYL56482.1\|1563777_1564833_+\|hypothetical-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	3.99191e-82
CP024677.1\|AYL56479.1\|1559500_1560709_+\|alcohol-dehydrogenase	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.04626e-10
CP024677.1\|AYL56483.1\|1564819_1565824_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	4.60833e-82
CP024677.1\|AYL56494.1\|1578371_1578623_+\|hypothetical-protein	gnl\|CDD\|184255	PRK13699, PRK13699, putative methylase; Provisional.	2.80115e-14
CP024677.1\|AYL56490.1\|1573197_1575612_-\|fimbrial-assembly-protein	gnl\|CDD\|237937	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional.	0
CP024677.1\|AYL56480.1\|1560752_1562228_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.60138e-139
CP024677.1\|AYL56478.1\|1557604_1559497_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|379192	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.	2.80183e-06
CP024677.1\|AYL56488.1\|1570809_1571790_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.91058e-79
CP024677.1\|AYL56476.1\|1555602_1557030_+\|gamma-aminobutyraldehyde-dehydrogenase	gnl\|CDD\|143411	cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.	0
CP024677.1\|AYL56492.1\|1576537_1577242_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	1.18285e-30
CP024677.1\|AYL56477.1\|1557041_1557515_+\|polyketide-cyclase	gnl\|CDD\|377824	pfam07366, SnoaL, SnoaL-like polyketide cyclase. This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation.	8.6951e-20
CP024677.1\|AYL56489.1\|1572649_1573201_-\|hypothetical-protein	gnl\|CDD\|185201	PRK15301, PRK15301, hypothetical protein; Provisional.	2.39327e-08
CP024677.1\|AYL56487.1\|1568286_1569434_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.19875e-70
CP024677.1\|AYL56485.1\|1566559_1567282_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270259	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.32082e-90
CP024677.1\|AYL59818.1\|1571862_1572504_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	1.77492e-20
CP024677.1\|AYL56493.1\|1577467_1577773_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.34689e-10
CP024677.1\|AYL56481.1\|1562334_1563597_+\|4-aminobutyrate-transaminase	gnl\|CDD\|182078	PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.	0
CP024677.1\|AYL56491.1\|1575733_1576438_-\|fimbrial-chaperone-protein	gnl\|CDD\|236632	PRK09918, PRK09918, putative fimbrial chaperone protein; Provisional.	3.53319e-98

>CP024677.1|AYL56485.1|1566559_1567282_-|molybdate-ABC-transporter-substrate-binding-protein
MPSSILLFAAGSLRPAFTPLISQFTRMSGIDVKIEYGPAGLLRERIETGEPCALFASANREHPQNLLVRNKAVSTHTFCWNKLSLVSNRIGTWLDLLRDPTLRPGTSTPGCDPSGDYTWAFFDNMDVLEPGLGRQLRARAIPLVGGRDTVKIPQGELASAWILRQGLADLFIGYAHYAHALHAMTDVHYVAIPDEHNICCEYQLAVLDASKEVMALVEFILSRSGQAFLTAAGFLPLNAE
>CP024677.1|AYL56484.1|1565820_1566573_+|ABC-transporter-ATP-binding-protein
MIPAALRVNQLSYGYRAPLFEPLTFCCQKGDIWAVLGRNGLGKSTLLDTLTGTLPALGGSIENNGGIGIVAQHSHLPFPYTVSDVVLMGRAQHVKLFAQPSQQDQQRAMQALEQLSIAHLASSSFGSLSGGQQQLVMIARALVTECQTLLLDEPCSALDLANQQVVLQLISDLAHQQGCSILFSTHDPLHALQVASHTLLLLPEGKWRAGPTDSIVTEENLFLAYGLPLRKLSVENHPTPFIAPLFSIRR
>CP024677.1|AYL56483.1|1564819_1565824_+|iron-ABC-transporter-permease
MQLSNRFLPQQPLLIVVVLLLGVSSLCLGQYPLSLSEVFYHLTHYSDAEGIASQVIWTVRLPRILMALLAGGALGLCGVTLQGVFHNPLVDPHIIGVTSGAAFGGTLAILLGLSPLLMMGSTFFFGLTALILVYAIAALQGLENTLVLILSGIILSGFFAALVSLIQYQADTEETLPNIVFWLLGSFATANWHKVLLLAVPVGIAATVLFQLRWRINLLSLNDKDARALGVAVVPLRRSVLVCCAFLVAAQVAVSGSIAWVGLVIPHLARLLVGVDHRRLLPCAFWLGGGFMIVVDDIARTLMHAEIPLGIITALFGAPLFAFLLIRTSRREKS
>CP024677.1|AYL56482.1|1563777_1564833_+|hypothetical-protein
MLTFRSFVLVCASMLFAFSAQADRTITDQLGRQVTIPDHVDKVVVLQHQTLNILVQLNAQQDIVGVMSSWKKQLGPEFARFMPTITTLPTPGDLTSVNIESLLAIHPQVVFVANYAPAEMIQQIQNAGIPVVAISLRKDADGQQNKMNPTMADEEQVYNEGLKQGIRLIADVVGRKPQAETLIDYVFAARAKFNAPVANIPDAQKVRIYMANPDLMTYGSGKYTGLMMQHAGGLNVAAASVKGARQVALEQVLAWNPQVIFVQDRYPQVVTQIQNDPNWQGIDAVKNHRVWLMPEYAKAWGYPMPEALAIGELWMAKKLYPDAYKDVDVDAQAQDYYQRFYRVNWQSDAAK
>CP024677.1|AYL56481.1|1562334_1563597_+|4-aminobutyrate-transaminase
MNNKNLQQRRLDATPRGVGVMCDFYAQSAENSTITDIEGNQYIDFAAGIAVLNTGHRHPRLVQAVEAQLQAFTHTAYQIVPYESYVSLAEKINAVAPIDGKRKTTFFTTGAEAVENAVKIARAHTGRPGVIAFGGGFHGRTYMTMALTGKVAPYKKGFGPFPGSVYHAPYPSELQGISTADSLKAIERLFKADIDPTQVAAIIFEPVQGEGGFVVAPPEFVAAIRRICDEHGIVMIADEVQSGFARTGQLFAMDHYADKADLMTMAKSLAGGMPLSGVVGKAEIMDAPAPGGLGGTYAGNPLSIAAAHAVLDIIHDEQLCQRAAALGEQLRAALTDAQAGCPELAEVRGLGSMIAAEFCDPVTGEPNASAAQRVQKKALEQGLLLLTCGQYGNVIRFLYPLTIPQDQFAKALQIIKAATK
>CP024677.1|AYL56480.1|1560752_1562228_-|PLP-dependent-aminotransferase-family-protein
MRSLAGDVIKHAFSQQTDEKLHRRLYAAICSCILEGSLKPATRMPPSRDLAGELMLSRNTVLRVYEQLQAEGYISARTSSGTFVTDSVLDNLNLRPNKEPVAAALEDHTRLSARCLELLGNASASPRQWGAFIPGVPDVEHFPHRVLKKIQDRLARRLRPEFLTYDAAGGVNELKEALADYLRTARGVRCSPEQILITEGIHQALDLVTRTLCNPGDHVWIEEPGYWGIKNILRINAVNFSAIPVDEQGMVPPDAGETPPKLIFVTPSHQYPLGSVMSLSRRRQLIFRARETRSWIVEDDYDSEFRFSGQPIPSLQGLEEETPVIYIGTFSKTLYPALRLGYVVLPKSLAAPLKKVHNDLYRGGHLLIQAALAEFIREGYYAAHIRKMRQLYSRRRQMLVELISRQLGEHYLGSFSSNAGLHMILQLPAGSDDAVIAQQANAQGLLVRPLSRYYVNEEKRSGLLLGFASIEEHEMSAAFTRLADIIRVNTV
>CP024677.1|AYL56479.1|1559500_1560709_+|alcohol-dehydrogenase
MRNVTILAACLFTASVSAAESNGEYIARISDCVACHTAEGGAAMAGGKKFPTPVGDIYSTNITPDKAQGIGNYSYEDFEKAVRQGIAKDGHPLYPAMPYPSYAKLSDEDVQALYRYFMHDVTPSAQPNKENAIPWLLSARWPLHIWNWLFTDAPATTVDSTKPDDNAALVKRGAYLVEGPGHCGSCHTPRGMAMNEKAYTHADAEYLSGAMIDGWYAPSLRGSGMSEQALKSLLLTGKSKHAAVSGSMAEVVTQSTQYLTDEDATAIAQYLLSLKSAKPETVRAAATTASWSNSPEAGKVTYNRYCSTCHGLEGKGTDDNAPSLVNNPLVMVDDPTPLFRVIAHGAETPTTRGSVSFKMPAYGGMLSDNEMRDVINYVRKTWGEGNGEVSHEDLAGIKKASH
>CP024677.1|AYL56478.1|1557604_1559497_+|NAD(P)/FAD-dependent-oxidoreductase
MAITRRDFLNGVAVTIAAGLTPLEWVRATGKGNAFIDGNYYPPALTGLRGNHPGSFEMAHALGREQKHFDLNALPVEEEYDLVIVGGGISGLAAGCFWRQVAGQNSRVLILDNHDDFGGHAKRNEFTSSGKKLLGYGGSEAFQSPAHNFSPEVQKLMETVGVSVTRLKESFDVNFYPDWQLSRGVFFDKKNFGVTKIVSGDPGRAVSDDIPPDRLNGRKIEDFINDFPLGENDRKALIDLHVRPGDYLPGMTVDEKMEWLDTHSYSEFLATKVGLSKMALLYFQQRSNDFFAIGIEGISCSDARACALPGMEGMGLPPLDGESLADLEEPYVYHFPDGNAGLARLLVRYMLPDALPGNTMEDSVLARLHYEKLDLPENTTRLRLNSTVINAANVQDGVVVTYLRDGKMHRVRGKNTIMAGYNMMIPYLVPEMPEQQQADLKLNVKAPLVYTNVVVKNWQAFKQLGVHEFYSPAAPYSRVKLDYPVSIGGYQHPASPDDPMVIHMVYVPTYPGSNLSAREQFRLGRAYLLGTTFAAHEEMIRSQLQEMFGSTGFDNQRDISAITVNRWAHGYAYYANSLFDDMDKMPEIIERARQPVGRIAIANSDSDWSAYAHTAIDQAWRAVNELKDMG
>CP024677.1|AYL56477.1|1557041_1557515_+|polyketide-cyclase
MKTVKIAVLSLVMLSGYSLAESTSLNTVKEYMAAWNAHDASRAAQYLADDAVYYDAAAGEPINGREKAEKEVIGAFIKAVPDLNWKMVGKPVYDEDTVAFRWEFSGKNSGEWAGSPPTNNPIKFEGVSYIHVKAGKITWQGDYYDSKKLDEELKPVK
>CP024677.1|AYL56476.1|1555602_1557030_+|gamma-aminobutyraldehyde-dehydrogenase
MKTLKHFINGHYVAGSSEDSFELVSPVDGETYAISPNANEAEVEQAYSAAEAAFSIWRKSTPAQRQKALLLLADEIERNVERLVTAQSQETGQLRHFIEKEEIAASCDTIRFFAGAARCLEGKAAGEYSAGFTSTIRREPLGIVGQVTPWNYPFMMAVWKIAPALAAGNTVVLKPSDTTPVSTLLLAELAAPLFPRGAFNVVLGKASTGSLVVSNPKASLVSITGSVRAGLQVAASAAANLTKAHLELGGKAPAVVFADADMDKAIATITTAGFFNAGQDCTAATRILVEQSIYAEFLEKLIQKTKSIKFGPPEDQNALYGALNSRNQLEQVKGFIERLPAHAKIETGGRAGPGPGFYFEPTIVSGLHQNDEAIQHEVFGPVMTIQSFSTDEEALHKANDVEYGLAASVWTSNHGRAQRFSIDLDFGTVWINNHIPLCAEMPHGGFKKSGYGKDLSSYSLEEYTRVKHIMCDISE
>CP024677.1|AYL56486.1|1567671_1567854_+|hypothetical-protein
MAFFFLISRDCRVIKQVDYILLILQRVFYSGSRQGHNGNGLNDMSTQSFSVARIVASIFS
>CP024677.1|AYL56487.1|1568286_1569434_-|IS3-family-transposase
MSGKRYPEEFKIEAVKQVIDRGHSVSSVATRLDITTHSLYAWIKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDIFKKSRGVLRKAVRLRYAFIRDNSLCWPVRLLCRVLDVHPSGFYAWFKQPYSQRHQIDLRLTGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMNRAGIKAQVGYRSPRAHKGEVSIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAIWRRNPLKQVMVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSNQMSPTEYENQYYQRLRSV
>CP024677.1|AYL56488.1|1570809_1571790_-|AraC-family-transcriptional-regulator
MKKILIIVPDGGMLFESAGIADIMMQANRLHPKIATETCYQVQLATTQPHQVIHGQSGLNLLADHRLHEIDPREPLDTIIITGRGQNPQEGIAVVDWLRLAAPHARRIASICGGAMLLAQTGLLDGRRATTHWKLLETMQAEFPQVRVESGPLYIQDEHIWTSGGVSSGFDLTLALVEEDYGFSLARDVAQDFVMYLRRPGGQLQFSRYNLQHTSTLGPINDLLVWLLENLTADLSVDKLAEKVAMSPRNFTRVFTRETGASPARYVAEARLAAARQRLEQTNETLERIAEQTGFGSSINLRRLFEKQLHLTPGEYRQRFHCRKMA
>CP024677.1|AYL59818.1|1571862_1572504_-|DUF1120-domain-containing-protein
MITKAYAENTVDVSFSAEMIPAACRVSLDNGGTVDYGTLSLSSIRSSSPYLLTPRVIGLHIQCESLRQVAWMVNDEKAETRVRNLIIDSHDDKTSGRHSSDTLFGLGVTSGQKPIGGYLITALAGESAVEGDIASWGYQTGEQERSMWQSAGTALTLISGIMRLTPVDAKNNPVAIRQLTIPLRISAAIASDGLSLQDETELQGEATISLIYL
>CP024677.1|AYL56489.1|1572649_1573201_-|hypothetical-protein
MIRLISLCCGIYFIVSPVVQAQCNIIASQLRHEYGKVRFQDTEPTGQVQWQQLPARQVQVQVRCDVPQPIHIRFDDNDRRGLDFSFGEEGRATVMFSEAFVDNKSSQFVVHHELNKSSESRSQTPIAVLNGDTVELQQHHQPVNGMSATFLLTVIPRVQARSFQVSDQQASTLSLRMTVPERE
>CP024677.1|AYL56490.1|1573197_1575612_-|fimbrial-assembly-protein
MPFNLIRTLPVHRYAYYLFLGLLGSYSMMLSAEPLLFDDGRLKNRGLDAGLSHYFSHAARFSPGEYPVSWVINGRNKRQLMTRFNAQGEPCITPETSRNLGLAYEFNQGCLDYQTLYPTAQLTADPYKNQISFTVPTSALTPESILLRKDIIQGGTSGLLNYNLQSSTTVQSGKHETYQLGLFESGLNLNDWLLRSRHTVSYSDGTRRSQRLYTYVQKTFQSLQQTFQAGEIYARQTLLAIPGLTGLQLFPDSALRPARSGVSVQGIARSAQARVEVYQNGQLIEATQVPEGPFSLDNISMLSTQFPLDVKVTEQDGQLTTFSVPVTALQTPADAPLYGSVALGKVRETVASDESAPWLITGSQGMRISRQATLSGSALASAQYQSAAASLSFIPIPAWSLSLQTTMAQEQYTHHAGSKESLSLRYQLNPSASIQAAWTTTSAGFRELSDAVNHTTSTANSYYNVGGNWAHEHLGLFSLSYSTSSARDHAATPKSWYASWSKNWRWAGHGQINLSATWQRVSGSRTSTQRDDDVFYIRLGLPLGHDRVNLSLRRQGSRTYNDVQTSGQWDDMSYSLSAGRDWQNAQNTISGSFGQNLHYAQMSGYASQTANYWGYGGSLSGGISVNQEGILFSPYAIQESYGALSLNSPLSGIKVSTPQGPVWTDYRGKALVPGLTPWQPSRLNIDVKTLPRHVDLTNGAAELTVSRGAVAFTQFRVSDTRRVLMTVRRTNGKLLSKGKGIVDSDGQYVTNSLEKGLVFFSNLQPGESFFVGDDNGSPMCQLQYSLPPTPPQDGLYEELTGVCE
>CP024677.1|AYL56491.1|1575733_1576438_-|fimbrial-chaperone-protein
MRQPFFFWKVLFILSLFLICVPQVSMATGMQPDSSLLLIQEKESGGSMNVTNTDNIPSLLYTQVINVDGEDDTIKLLPTQPVVRVEGGKTQQVRFILKTEKPLITEHLKRVIFEGIPPKIPGSNKIGITIRQNLPVLIHPEGLPERKDPWTLLTWHKEGNQLKVTNPGPYVVRLAQQFVTLPSKTQFDLGRTYLLPGQHITLSSASSLTADNEVRFVPVSRYGVQVSEFIASLN
>CP024677.1|AYL56492.1|1576537_1577242_-|DUF1120-domain-containing-protein
MKLNKLLVALSLTFISGSVLAAGGDTATLKVTGKLVPGACAVNLDNAGIVDYGTMLMTNLSATEDNQLPEKRINMGIKCNSERLVAYTLHDERRDSLYNGVIKNATVDGSDIPASSNQFGLGLTNDGETTLGAYTVINWFPDMTYSGSTDNLVFISKKITSDDWSRTASGSTVNGVDVAARLHTLGNPDTLTPAAFSELKVPLSIKGVLRKGEDLKITDETNLDGEATISLVYL
>CP024677.1|AYL56493.1|1577467_1577773_-|XRE-family-transcriptional-regulator
MHLKYNISNVNARIGRFVRSNRQRMNMSAEELAVELNICQQHVSRFERGQCAFTLEFILRILNVFNIRLSHLVSEVFYEDSQVFSKARNIIQNNSMTKTIN
>CP024677.1|AYL56494.1|1578371_1578623_+|hypothetical-protein
MRKDIHCWLQCTAPEWTQDGRLFRFFPDRAVDFIPHRSPAVGRSPWPFRHSIAGDKSDEWLQPTCNEMKCVLKTDALMDALRT

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Crispr_ID: CP024677_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024677_3

4921213-4921293

Orphan

Consensus_repeat	Method
TTAACAATTTCTGCGAAATTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024677_3

>merge|CP024677|3|4921213-4921293|CRISPRCasFinder
TTAACAATTTCTGCGAAATTGAATTTTCTGTCCGCACTCCACGTGCTTATTTTACGGCTTAACAATTTCTTCGAAATTGAA

>CP024677|3|2|4921213-4921293|CRISPRCasFinder
TTAACAATTTCTGCGAAATTGAA	TTTTCTGTCCGCACTCCACGTGCTTATTTTACGGC
TTAACAATTTCTTCGAAATTGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP024677.1\|AYL59495.1\|4922074_4922473_-\|Cag-pathogenicity-island-protein-Cag12	unknown	unknown	gnl\|CDD\|372486
CP024677.1\|AYL59958.1\|4927615_4927831_-\|hypothetical-protein	unknown	unknown	unknown
CP024677.1\|AYL59496.1\|4922469_4923495_-\|P-type-DNA-transfer-ATPase-VirB11	unknown	unknown	gnl\|CDD\|274301
CP024677.1\|AYL59500.1\|4926536_4927604_-\|conjugal-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|377390
CP024677.1\|AYL59491.1\|4918096_4918849_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-MobC	unknown	unknown	unknown
CP024677.1\|AYL59497.1\|4923484_4924711_-\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|319755
CP024677.1\|AYL59494.1\|4921723_4922026_-\|kikA-from-plasmid-origin	unknown	unknown	gnl\|CDD\|237548
CP024677.1\|AYL59486.1\|4913920_4914325_-\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	gnl\|CDD\|225511
CP024677.1\|AYL59483.1\|4910700_4911908_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|181829
CP024677.1\|AYL59499.1\|4925629_4926313_-\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|377310
CP024677.1\|AYL59501.1\|4927861_4928566_-\|type-IV-secretion-system-protein-VirB5	unknown	unknown	gnl\|CDD\|369643
CP024677.1\|AYL59485.1\|4913573_4913924_-\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	gnl\|CDD\|377551
CP024677.1\|AYL59484.1\|4911950_4913543_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
CP024677.1\|AYL59488.1\|4916279_4917224_+\|DUF1738-domain-containing-protein	unknown	unknown	gnl\|CDD\|226680
CP024677.1\|AYL59498.1\|4924724_4925633_-\|P-type-conjugative-transfer-protein-VirB9	unknown	unknown	gnl\|CDD\|274296
CP024677.1\|AYL59492.1\|4918857_4920594_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|274760
CP024677.1\|AYL59490.1\|4917785_4918100_+\|plasmid-maintenance-protein-CcdB	unknown	unknown	gnl\|CDD\|376629
CP024677.1\|AYL59489.1\|4917546_4917783_+\|antitoxin	unknown	unknown	gnl\|CDD\|377822
CP024677.1\|AYL59493.1\|4921369_4921675_-\|dpoa-decarboxylase	unknown	unknown	unknown
CP024677.1\|AYL59487.1\|4915108_4915405_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176164

Protein	Function_ID	Function_description	E-value
CP024677.1\|AYL59495.1\|4922074_4922473_-\|Cag-pathogenicity-island-protein-Cag12	gnl\|CDD\|372486	pfam13117, Cag12, Cag pathogenicity island protein Cag12. This is a Proteobacterial family of Cag pathogenicity island proteins.	8.87073e-27
CP024677.1\|AYL59500.1\|4926536_4927604_-\|conjugal-transfer-protein-TrbL	gnl\|CDD\|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	4.79213e-35
CP024677.1\|AYL59497.1\|4923484_4924711_-\|type-VI-secretion-protein	gnl\|CDD\|319755	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS). This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.	7.30114e-57
CP024677.1\|AYL59494.1\|4921723_4922026_-\|kikA-from-plasmid-origin	gnl\|CDD\|237548	PRK13893, PRK13893, conjugal transfer protein TrbM; Provisional.	0.000568273
CP024677.1\|AYL59486.1\|4913920_4914325_-\|IS66-family-insertion-sequence-hypothetical-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.58726e-13
CP024677.1\|AYL59483.1\|4910700_4911908_-\|IS3-family-transposase	gnl\|CDD\|181829	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed.	1.58708e-130
CP024677.1\|AYL59499.1\|4925629_4926313_-\|type-IV-secretion-system-protein	gnl\|CDD\|377310	pfam04335, VirB8, VirB8 protein. VirB8 is a bacterial virulence protein with cytoplasmic, transmembrane, and periplasmic regions. It is thought that it is a primary constituent of a DNA transporter. The periplasmic region interacts with VirB9, VirB10, and itself. This family also includes the conjugal transfer protein family TrbF, a family of proteins known to be involved in conjugal transfer. The TrbF protein is thought to compose part of the pilus required for transfer. This domain has a similar fold to the NTF2 protein.	4.36483e-47
CP024677.1\|AYL59501.1\|4927861_4928566_-\|type-IV-secretion-system-protein-VirB5	gnl\|CDD\|369643	pfam07996, T4SS, Type IV secretion system proteins. Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries.	4.647e-34
CP024677.1\|AYL59485.1\|4913573_4913924_-\|IS66-family-insertion-sequence-hypothetical-protein	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	1.77527e-49
CP024677.1\|AYL59496.1\|4922469_4923495_-\|P-type-DNA-transfer-ATPase-VirB11	gnl\|CDD\|274301	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.	1.02469e-105
CP024677.1\|AYL59488.1\|4916279_4917224_+\|DUF1738-domain-containing-protein	gnl\|CDD\|226680	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair].	3.6683e-100
CP024677.1\|AYL59498.1\|4924724_4925633_-\|P-type-conjugative-transfer-protein-VirB9	gnl\|CDD\|274296	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system . VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein. [Cellular processes, Conjugation].	3.6417e-78
CP024677.1\|AYL59492.1\|4918857_4920594_-\|MFS-transporter	gnl\|CDD\|274760	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. [Mobile and extrachromosomal element functions, Other].	1.6133e-06
CP024677.1\|AYL59490.1\|4917785_4918100_+\|plasmid-maintenance-protein-CcdB	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	5.53473e-37
CP024677.1\|AYL59489.1\|4917546_4917783_+\|antitoxin	gnl\|CDD\|377822	pfam07362, CcdA, Post-segregation antitoxin CcdA. This family consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein.	6.81345e-24
CP024677.1\|AYL59484.1\|4911950_4913543_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	6.25481e-115
CP024677.1\|AYL59487.1\|4915108_4915405_-\|hypothetical-protein	gnl\|CDD\|176164	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 6. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.62712e-33

>CP024677.1|AYL59492.1|4918857_4920594_-|MFS-transporter
MGTHLMQRLNAFSDAFSVFLLWLQHNPVILSLFAGLTLPFIFHLSREERKNAPFWLKSVACVSIFFFISGPLSPLTIQGLSFFFTVLDNHILLRLSLWILTIGLTLAGLAFHITARRLLAGEIDSLKHRMIKKSKLERNIRTDVRDVRDMLPDSIEYNPLDYINLKKGIFIGLDKDNQPQYITAEEFQTQHADLIGTTGSGKGVSACVLLYQAILSGEGVFVEDPKNDEWAPHVLRDACLKAEKPFVLINLNDLHFQLDLLADISHEQLEELFNAGFSLGKKGEGADFYRIADRRAARNTAAIYEKGMTLRDLFNTDFVKSLSEDVPAFYGELEEIALVNSINAHNGFSLKTIFNEGGCCYIIGSMRNQKIISAQRMILTRLIQIAETRDRIKGKPRPVAIFLDELKYHLSRPALEGLGAARDKGVHIIMAHQSVKDLYDCPADLEGDAVAGSVIENCKFMLVYRLRDPDTADWVARMTGSILVDDEMRKVKTDISLTEKMETDRMIRQAERYYIDSNMLLNLPKFVGFVFTWNDLAKATKLFHIPAKKQYIDLLSFEHKHPLYTEKDHQVHKPSINL
>CP024677.1|AYL59491.1|4918096_4918849_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-MobC
MLIHNVAERNEAANRRMEALLSFLKEETFSDFLTLKKVVGYKGRHNHAMYNLLNKAVALGFLSKHEYPVLTGKKALWGITMPGLARVVNADDPVFPAYFEPGKLRHRTLEHRLLNQRVRLALEEKGGTGWLNGDRGAFIARYPGVRHRPDGIITLSSGAIIAVETERSLKTRARYITIINSHLAASDAGCWHYAMYVMPDDKTRVSLGRLFDSIRTVMRNSVPVPFDAKNREMFLFRTIAELEQAPDSHD
>CP024677.1|AYL59490.1|4917785_4918100_+|plasmid-maintenance-protein-CcdB
MQFTVYGNTGKSAVYPLLLDVTSDIIGQLNRRIVIPLLPVDRYPAGRRPDRLVPVVRLTDGQEYAVMTHELASVPVRALGAVFCDASQYRTQVKAAIDFLIDGI
>CP024677.1|AYL59489.1|4917546_4917783_+|antitoxin
MTAKQRNTLSVTMTVERALLVRAREAGINLSATLTAALDAELRHHEAKKWQEENREAIDALNRFHDEYGCFSDEYRTF
>CP024677.1|AYL59488.1|4916279_4917224_+|DUF1738-domain-containing-protein
MTISLHTQTCAPNTAAATSVSSLDPSGSSKTKFPRTRTDIYQTVTDNIITALEAGVKPWVCPWQRVAGMSGLPSNYATGAAYSGMNIMLLWCSASEQGFSDSRWMTWKQAQAEGGQVRKGEHGTTAIFYTTLEKENDAGDIDHIPMLKTFTVFNVEQIDGLSLTTEAVSPAETFDPLPQAENLFRNSGATIIEKGQNAFFMPSTDEVWLPERRFFSDAANFYATGLHELVHWSGGKSRLNREMKGKFGSEGYAFEELCAELGSAFLMADLGIVGEVQHESYIASWLKALKNDKRYIFKAASAASKAHRYLMDKA
>CP024677.1|AYL59487.1|4915108_4915405_-|hypothetical-protein
MMPVLLEIAAKYPEIRLVLTFNDRVIDPLDMGFDLAVRFGPLKDTADLIARALNPQKLIRCASPDYLLRYGTPGNVGDLHNECHRVAEQRDPACHQKA
>CP024677.1|AYL59486.1|4913920_4914325_-|IS66-family-insertion-sequence-hypothetical-protein
MENTANWRTESRTVYSNDFKLRIVELASQPDANVAKIARENGVAHNLIFKWLRMWQNEGRVSRRLPATITPPSELSLLPVEIVSEPPTSDNGSGQCPLNASSCSVEFRHGKISLENPSPELLGVLLRELTGRSQ
>CP024677.1|AYL59485.1|4913573_4913924_-|IS66-family-insertion-sequence-hypothetical-protein
MISLPSGTRIWLVAGVTDMRKSFNGLGELVQHALDENPFSGHLFIFRGRRGDTVKILWADADGLCLLTKRLEEGQFIWPAVRDGKIAITRSQLAMLLDKLDWRQPKTARLNSLTML
>CP024677.1|AYL59484.1|4911950_4913543_-|IS66-family-transposase
MSQDYLARIAALEDALRQKDSQLSLVAETESFLRSALARAEEKIENEEREIEHLRAQIEKLRRMLFGTRSEKLRRQVEEAEALLKQQEQQSDRYNGRDNDQQVPRQLRQSRHRRPLPDHLPREINRLEPAETCCPDCGSDMAYLSEVSAEQLELVSSALKVLRTVRVKKACTRCDCIVEASAPSRPIDRGIAGPGLLARVLTAKYCEHLPLYRQCEIFARQGVDLSRALLSNWVDACCRLMAPLDEALYRYVMDCRKLHTDDTPVPVLAPGRKKTKTGRIWTYVRDDRSAGSSDPPAAWFAFSPDRQGKHPQQHLRHYHGVLQADAFAGYDRLFSAERNGGPLTEAACWAHARRKIHDVYISTQTATAGEALKRIGELYAVEEEIRGLPATERLATRQSRSKPLLISLHDWLVEKSATLSKKSRLGEAFAYALNQWDALCYYCDDGLAEPDNNAAERALRAVCLGKKNFIFFGSDHSGERGALLYGLIGTCRLNGIDPETYLRHILSVLPEWPSNKVAELLPWNVELTNK
>CP024677.1|AYL59483.1|4910700_4911908_-|IS3-family-transposase
MTGILLGQEVRKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLTAVAAGEEVVPASELAAALKQVRELQRLLGKKTMEVEILKEAVEYGQSPKMDSARALVAKGRGIAQVSRAMSVSRAQLSLRVNRSADWQDRRRNRRNDEADAEILSGILDIISDMPSYGYRRVWGILRKQRRVEGLPSVNAKRLYRIMSEHNLLLLHDKSERPKREHKGKIAVAESDMRWCSDGFEFGCDNGEKLRVTFALDCCDREAIDWAASTGGYDSSTVQDVMLRSVEKRFGSTLPANPVQWLTDNGSAYTAHETRKFARELNLEPCTTAVSSPQSNGMAERFVKTMKEDYITFMPKPDVRTAIENLAAAFNHYNENHPHSALGYNSPREYRRQRTSLT
>CP024677.1|AYL59493.1|4921369_4921675_-|dpoa-decarboxylase
MNKEHLFISNIHSTHQDRISVTCIYNSLSKEACRGCGLYYEIYESRFIHLLRHHLSQLNEPDAEKLRRYAESQGTKTDDETYRAALNAERECLAEIAHEQR
>CP024677.1|AYL59494.1|4921723_4922026_-|kikA-from-plasmid-origin
MKYSAITAAMLCIAAGTPVYSFAADPCEVVLCLYGKATGNSGGSECHSAERAFFNIVKKNRHGFLPNHTLNARKVFLGECASADPAAVNKILSRFGRVRG
>CP024677.1|AYL59495.1|4922074_4922473_-|Cag-pathogenicity-island-protein-Cag12
MMKVINMLLFSLVLSGCSSPPPPVPVEWNKPGQSVNTGLPQWRDNLVIIPSPVVNDKWLLSIHARNYNETRWTPAVFYAVAHSARIVVAAPSGADFFTAKNWLRQYGAKGVIAYQPVSDCLTCSDTRIYFSR
>CP024677.1|AYL59496.1|4922469_4923495_-|P-type-DNA-transfer-ATPase-VirB11
MTAKNISLDRYKQRFFGDFLALPGLTEIAVNRPGELFTKINGVWEQHAVPLDYEGYYNFARCLAKHHGDNIEDIKPGLSATLESGERCQVIVPPACERDTVSITLRKPSRVQIPHQDYIDAGFYNRVAGTEKTQTHDEELLTLYHAKDIPRFMEKCVEYGKTLAVAGETSTGKTTYMKMLIGYIPPHLRITTIEDNPEITFFIHKNYVHLFYPSESADEKWSMVTPASLLRWNYRMNPDRILLTEVRGGEAWDFLKITGSGHEGSMTSLHAGSAREAVDGFITRCYENPQCARLPYTFMLRKVLDSLDVIVSIDLDGNVRRMNDIYFRPLHRSAFFEEMKA
>CP024677.1|AYL59497.1|4923484_4924711_-|type-VI-secretion-protein
MQMNDEHPHPEPDESRSSPAQPEDDIAALEREARARREAALLTMQEDEENDPVQPAINKLKKRRRGKATAFLALAAVALIGLAWAGNWVYRNLLWPPGEEKRQDAAPQPNRSDYRQRTDLGAHDTAADTPEPVDSIPRSTTVTGPETPPELDKARFLVRRDNSAAAARNPVRTRQQEMTQATSTGQQTDTTPTPTESSPAAVRRIPYNPDLYVPENTAIPCSLDYRFVSDRAGKIRCTIADDIWSASGNTKLIEKGTTATGIYQTGAETGMTHGQGRAFLIITKLRTRQPPYLDIPLVDTRAAGELGEAGVDGWIDSHFSERFGGALLVGMIPDVAAWASNSAGQKDRNTDYTENSRQAMADMARTTLENSINIPPTVHKNQGEIINLVTGQDIDFSGIYTLRMKNDR
>CP024677.1|AYL59498.1|4924724_4925633_-|P-type-conjugative-transfer-protein-VirB9
MMKSIIFILLALMLCGTAWSAAIPQASRYDARVQQVVYNPLNVTVVSTRPGFMTTLVFDSDEAVISARPGFEEAWEATPVANRVSVRPVALVQGAPGADGNTTQVVIPPNSRDWHTNLLVVTTRRLYNVELNVIDDKSPQQPAYQVSYRYPGEDREKASRETATSALEREQKQQQADIQQALNAAQTPRNWDYLSYPGRDSVRIVPDFAYDDGRFTFVGFSPAKSIPSVTKVLNGQEHVVNSSVRRKGNFTVLLIQEATPRLVLRSGNAVVGLENRGFGRVRAADGATVSPQVERVEKPATH
>CP024677.1|AYL59499.1|4925629_4926313_-|type-IV-secretion-system-protein
MSEQTLIADSRTFEQQMIERDKRATKAGFMVGGTGLLTAMLALIALVLMLPLKQTVVELYTVDNHTGRVEHVTRVSKTHLTAEDAYQKAMTASYVRLRERYVYPSLQDDYATVQIYNSPQVNDDYLALYAGKDAPDKVYQNGAHTVRIDILSNQLTGGTDPDKVATLRYKKIIRRLADNSTRTEYWDARLTFHSDPGREMSDTEREVNPFGFTVTSWQADREIRGGE
>CP024677.1|AYL59500.1|4926536_4927604_-|conjugal-transfer-protein-TrbL
MADLGTFEFIEKQLIGGITQSTSGLMMEHSAMVMGLAAASATLYILWRGYQTLAGKLSTPMEDVMWDLMRMAIILSFVANVSGYLDSVIDSINGLKEGFSGGDNIWQMLDTLWDKAKVLGKTLHDMDNSTYIKDEGMTAQLYVWLGVFVLMLVTAFVSMIAEVMILLLSITAPIFIFCLIYGFLRPMFNNWLQNIFAAILTVLFSALSLRMVINFVTKILTQSLAGAAKANIVELGAQVCLAGICAAILVYLSARLAGALAGASATISMQGLAAVGIGAAAFGAGKLAAGAGKQTTRAVQDTLQGWRDASAGKPGSGPGYSAAKARKYAIEQMIARNEARRLAQARDSAVQKFHR
>CP024677.1|AYL59958.1|4927615_4927831_-|hypothetical-protein
MVILTLSFITIISGCDEEAKTTQWYRDHPDELKTVYEKCQKTGSASENCKNANEAHYQIQQLNAPTLKFHE
>CP024677.1|AYL59501.1|4927861_4928566_-|type-IV-secretion-system-protein-VirB5
MKRRFHALIFACVMVSPLAHAGIPVLVDADPLREAEWLKEAQRWMQTAQHYQSQIQAYKDQLATATGIRDIADFVDQAKSLKSDLEKLRKPGQALNDLLLSGGSSGQFDALYEKYKIFDTCNTEQSENYARVCKQQVINKAIQFEQTDEIQGQVSQMLGEINSLSNRIALSRDTKESQDLANSIQLKSVMLNTLTDQWEISVKAAEQREKVLENERIKQWNQQQLNAPTLKFHE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024677_1	1.1\|1567522\|38\|CP024677\|CRISPRCasFinder	1567522-1567559	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	3	0.921
CP024677_2	2.3\|3624756\|31\|CP024677\|CRT	3624756-3624786	31	LR135896	uncultured phage genomic DNA containing rbcL region region	68325-68355	5	0.839

1. spacer 1.1|1567522|38|CP024677|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.921

cggacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******..****************************

2. spacer 2.3|3624756|31|CP024677|CRT matches to LR135896 (uncultured phage genomic DNA containing rbcL region region) position: , mismatch: 5, identity: 0.839

agtga-ttccgggatgtttttggtgctttttt	CRISPR spacer
-ttgacttccgggttgttttttgtgcttttct	Protospacer
  *** ******* ******* ********.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

937033 : 980086

Cronobacter_phage(66.67%)

portal,capsid,integrase,head,transposase,tail,terminase

attL 956608:956626|attR 981544:981562

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL55898.1\|937033_938202_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-166	89.5
AYL59780.1\|938942_939233_+	hypothetical protein	NA	NA	NA	NA
AYL55899.1\|939362_939614_+	hypothetical protein	NA	NA	NA	NA
AYL55900.1\|939620_940073_-	hypothetical protein	NA	NA	NA	NA
AYL55901.1\|940377_941229_-	DUF2806 domain-containing protein	A0A291AUV8	Sinorhizobium_phage	4.9e-22	28.8
AYL55902.1\|941274_941991_+	methyltransferase	Q7Y3M8	Enterobacteria_phage	7.9e-74	54.2
AYL55903.1\|942321_942705_+	transcriptional regulator	NA	NA	NA	NA
AYL55904.1\|942807_943905_+	oxidoreductase	NA	NA	NA	NA
AYL55905.1\|943910_944537_-	glutathione S-transferase family protein	NA	NA	NA	NA
AYL59781.1\|944865_946068_+	serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.9e-97	47.1
AYL55906.1\|946112_946871_-	DNA-binding transcriptional repressor DeoR	A0A077SK06	Escherichia_phage	3.9e-15	28.8
AYL59782.1\|946935_947544_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
AYL55907.1\|947842_949075_+	multidrug transporter MdfA	NA	NA	NA	NA
AYL55908.1\|949103_949385_-	hypothetical protein	NA	NA	NA	NA
AYL55909.1\|949492_950308_-	HAD family hydrolase	NA	NA	NA	NA
AYL55910.1\|950307_951516_-	MFS transporter	NA	NA	NA	NA
AYL55911.1\|951601_952150_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
AYL55912.1\|952155_953070_-	LysR family transcriptional regulator	NA	NA	NA	NA
AYL55913.1\|953172_954099_+	EamA/RhaT family transporter	NA	NA	NA	NA
AYL55914.1\|954100_954898_-	short-chain dehydrogenase	NA	NA	NA	NA
AYL55915.1\|955062_956274_-	Bcr/CflA family drug resistance efflux transporter	S4TR35	Salmonella_phage	7.3e-189	90.5
956608:956626	attL	NA	NA	NA	NA
AYL55916.1\|956700_957753_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	3.6e-107	56.4
AYL55917.1\|957857_959639_-	hypothetical protein	NA	NA	NA	NA
AYL55918.1\|959650_960220_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	5.4e-33	39.8
AYL55919.1\|960348_960570_+	regulator	NA	NA	NA	NA
AYL55920.1\|960599_961103_+	hypothetical protein	F1BUN6	Cronobacter_phage	4.5e-60	72.5
AYL55921.1\|961151_961613_-	hypothetical protein	NA	NA	NA	NA
AYL55922.1\|961852_962026_+	hypothetical protein	NA	NA	NA	NA
AYL55923.1\|962035_962467_+	hypothetical protein	F1BUN5	Cronobacter_phage	3.3e-27	55.4
AYL55924.1\|962463_962865_+	hypothetical protein	F1BUN2	Cronobacter_phage	8.9e-51	68.4
AYL55925.1\|962932_963166_+	DUF2732 domain-containing protein	NA	NA	NA	NA
AYL55926.1\|963156_963486_+	DUF3850 domain-containing protein	Q7Y4B7	Escherichia_virus	6.7e-12	46.4
AYL55927.1\|963475_964345_+	adenine methylase	F1BUN1	Cronobacter_phage	5.0e-131	81.0
AYL55928.1\|964341_964554_+	hypothetical protein	NA	NA	NA	NA
AYL55929.1\|964555_966571_+	replication endonuclease	F1BUM9	Cronobacter_phage	1.1e-298	74.9
AYL55930.1\|966686_966905_+	hypothetical protein	E5G6M0	Salmonella_phage	3.6e-06	47.2
AYL55931.1\|966878_967202_-	transcriptional regulator	F1BUM8	Cronobacter_phage	4.7e-50	93.3
AYL55932.1\|967198_968260_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	2.7e-163	78.1
AYL55933.1\|968256_970032_-\|terminase	terminase	F1BUM5	Cronobacter_phage	6.8e-292	83.6
AYL55934.1\|970192_970996_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	5.7e-81	56.8
AYL55935.1\|971057_972080_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.0e-159	81.8
AYL55936.1\|972083_972785_+\|terminase	terminase	F1BUM0	Cronobacter_phage	3.5e-90	69.4
AYL55937.1\|972830_973334_+\|head	head completion protein	F1BUL8	Cronobacter_phage	1.5e-63	82.7
AYL55938.1\|973330_973837_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	1.1e-64	68.1
AYL55939.1\|973833_974541_+	hypothetical protein	F1BUL6	Cronobacter_phage	2.2e-100	76.1
AYL55940.1\|974537_975665_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	8.1e-174	81.9
AYL55941.1\|975661_976117_+	DUF2597 domain-containing protein	F1BUL4	Cronobacter_phage	5.9e-59	72.8
AYL55942.1\|976617_977151_+\|tail	phage tail protein	F1BUK2	Cronobacter_phage	3.1e-22	38.3
AYL55943.1\|977140_977866_+	hypothetical protein	F1BUK1	Cronobacter_phage	1.6e-66	55.2
AYL55944.1\|977837_978383_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.9e-65	73.1
AYL55945.1\|978382_980086_+	hypothetical protein	F1BUJ7	Cronobacter_phage	1.7e-223	77.6
981544:981562	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1273788 : 1369208

121

Vibrio_phage(16.28%)

portal,capsid,integrase,holin,head,transposase,tail,terminase,tRNA

attL 1278265:1278324|attR 1367543:1368792

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL56200.1\|1273788_1275075_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	5.5e-110	50.6
AYL56201.1\|1275074_1275290_-	hypothetical protein	A0A0U2RY08	Escherichia_phage	1.5e-20	57.7
AYL56202.1\|1275354_1275597_-	DUF4060 domain-containing protein	K7PHF4	Enterobacteria_phage	3.3e-32	87.3
AYL56203.1\|1275636_1276722_-	enterohemolysin	K7PKR8	Enterobacteria_phage	6.7e-125	63.6
1278265:1278324	attL	NA	NA	NA	NA
AYL56204.1\|1278337_1279505_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-166	89.5
AYL56205.1\|1279427_1279679_-	hypothetical protein	NA	NA	NA	NA
AYL56206.1\|1279733_1279922_+	hypothetical protein	NA	NA	NA	NA
AYL56207.1\|1280078_1280339_-	hypothetical protein	NA	NA	NA	NA
AYL56208.1\|1280638_1280917_+\|holin	holin	K7P6H9	Enterobacteria_phage	3.9e-45	100.0
AYL56209.1\|1280888_1281437_+	lysozyme	K7PM52	Enterobacteria_phage	4.6e-98	93.4
AYL59794.1\|1281466_1281949_+	DUF2514 domain-containing protein	NA	NA	NA	NA
AYL56210.1\|1281945_1282176_+	hypothetical protein	NA	NA	NA	NA
AYL59795.1\|1282566_1282764_+	hypothetical protein	K7PHC3	Enterobacterial_phage	3.7e-26	90.8
AYL56211.1\|1282801_1282957_+	DUF2514 domain-containing protein	NA	NA	NA	NA
AYL56212.1\|1283335_1283548_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	4.6e-22	72.9
AYL59796.1\|1283558_1283747_+	cold-shock protein	NA	NA	NA	NA
AYL56213.1\|1283820_1284051_+	hypothetical protein	NA	NA	NA	NA
AYL56214.1\|1284255_1284429_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
AYL56215.1\|1284801_1285341_-	cytochrome b	A0A0U2QLA7	Escherichia_phage	6.4e-44	79.0
AYL56216.1\|1285616_1285979_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.7e-56	86.7
AYL56217.1\|1286203_1286710_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	1.0e-83	93.9
AYL56218.1\|1286706_1288434_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	92.8
AYL56219.1\|1288427_1288607_+	hypothetical protein	Q6UAX9	Klebsiella_phage	3.3e-13	71.2
AYL56220.1\|1288606_1289866_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.2e-220	89.8
AYL56221.1\|1289902_1290823_+	serine peptidase	Q6UAX7	Klebsiella_phage	2.7e-135	80.1
AYL56222.1\|1290895_1292182_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	1.1e-211	88.8
AYL56223.1\|1292279_1292657_+	hypothetical protein	Q6UAX5	Klebsiella_phage	4.2e-18	59.5
AYL59797.1\|1292637_1292955_+\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	2.8e-39	79.6
AYL56224.1\|1293447_1293780_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	5.3e-41	67.9
AYL56225.1\|1293788_1294484_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.6e-95	71.9
AYL56226.1\|1294495_1295230_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-114	76.5
AYL56227.1\|1295127_1295805_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.3e-78	69.3
AYL56228.1\|1297491_1297872_+	hypothetical protein	Q9EYE7	Enterobacteria_phage	1.6e-25	48.4
AYL56229.1\|1297913_1300571_+	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	6.1e-71	48.9
AYL56230.1\|1300570_1301152_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.6e-56	57.1
AYL56231.1\|1301459_1301648_+	hypothetical protein	Q1MVE7	Enterobacteria_phage	2.2e-15	61.4
AYL56232.1\|1302429_1303800_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.7e-107	44.6
AYL59798.1\|1303803_1304445_-	lysogenization protein HflD	NA	NA	NA	NA
AYL56233.1\|1304479_1305586_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AYL56234.1\|1305639_1306101_-	NUDIX hydrolase	NA	NA	NA	NA
AYL56235.1\|1306110_1307043_-	hypothetical protein	NA	NA	NA	NA
AYL56236.1\|1307077_1307695_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AYL56237.1\|1307897_1309148_+	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	9.4e-22	94.4
AYL56238.1\|1309306_1310389_+	hypothetical protein	NA	NA	NA	NA
AYL56239.1\|1310385_1311036_+	hypothetical protein	NA	NA	NA	NA
AYL56240.1\|1311107_1312235_-\|integrase	integrase	O21925	Phage_21	8.2e-118	57.8
AYL56241.1\|1312215_1312461_-	excisionase	NA	NA	NA	NA
AYL56242.1\|1312872_1313346_+	hypothetical protein	NA	NA	NA	NA
AYL56243.1\|1313755_1314382_-	LexA family transcriptional repressor	K7PM82	Enterobacteria_phage	1.9e-47	49.3
AYL56244.1\|1314484_1314712_+	cell division protein	NA	NA	NA	NA
AYL56245.1\|1314722_1315274_+	DNA-binding protein	A0A1C9II13	Salmonella_phage	3.0e-65	67.8
AYL56246.1\|1315446_1315626_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.7e-15	75.0
AYL56247.1\|1315615_1316473_+	GntR family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	7.5e-63	95.1
AYL56248.1\|1316469_1317348_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.0e-131	75.6
AYL56249.1\|1317344_1317731_+	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	3.2e-61	88.4
AYL56250.1\|1317744_1318431_+	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	2.4e-56	52.9
AYL56251.1\|1318427_1319423_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	9.4e-142	70.2
AYL56252.1\|1319440_1319836_+	antitermination protein Q	U5P0A5	Shigella_phage	2.5e-45	70.0
AYL56253.1\|1319977_1320832_+	hypothetical protein	NA	NA	NA	NA
AYL56254.1\|1321809_1322121_+\|tail	phage tail assembly protein	Q75QK8	Wolbachia_phage	7.5e-05	31.6
AYL56255.1\|1322223_1322895_+	hypothetical protein	A0A193GYM8	Enterobacter_phage	8.6e-14	47.9
AYL56256.1\|1322884_1323448_+\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	8.2e-26	40.9
AYL56257.1\|1323440_1325213_+\|tail	phage tail protein	Q6K1H2	Salmonella_virus	1.2e-67	36.2
AYL56258.1\|1325212_1325797_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.0e-56	55.2
AYL56259.1\|1325861_1326719_-	protein YibB	A0A292GL11	Xanthomonas_phage	1.7e-06	29.1
AYL56260.1\|1327204_1327447_-	DinI family protein	Q6UAW0	Klebsiella_phage	1.7e-28	76.6
AYL56261.1\|1327766_1328156_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	1.4e-48	70.5
AYL56262.1\|1328550_1329894_+	DUF4433 domain-containing protein	NA	NA	NA	NA
AYL56263.1\|1329887_1331018_+	hypothetical protein	A0A2D1GR68	Pseudomonas_phage	1.0e-27	42.1
AYL56264.1\|1331345_1332443_+	hypothetical protein	NA	NA	NA	NA
AYL56265.1\|1332671_1333343_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	2.2e-78	59.0
AYL56266.1\|1333514_1333718_+	hypothetical protein	NA	NA	NA	NA
AYL56267.1\|1334068_1334221_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.1e-20	94.0
AYL56268.1\|1334356_1334866_-	DedA family protein	NA	NA	NA	NA
AYL56269.1\|1335040_1335283_-	DinI family protein	Q6UAW0	Klebsiella_phage	1.5e-29	77.9
AYL56270.1\|1335765_1336257_-	hypothetical protein	A0A2D1GNK9	Pseudomonas_phage	9.7e-07	38.5
AYL56271.1\|1336454_1336709_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	3.1e-17	62.7
AYL56272.1\|1336708_1338688_+\|transposase	transposase	C9DGL1	Escherichia_phage	3.7e-190	51.7
AYL56273.1\|1338783_1339722_+	hypothetical protein	A0A0C4UQR3	Shigella_phage	1.2e-74	47.5
AYL56274.1\|1339726_1339966_+	hypothetical protein	NA	NA	NA	NA
AYL56275.1\|1339968_1340259_+	hypothetical protein	C9DGL7	Escherichia_phage	7.0e-13	44.9
AYL56276.1\|1340270_1340525_+	host nuclease inhibitor protein	A0A0U5KSG7	unidentified_phage	2.0e-16	52.1
AYL56277.1\|1340538_1341066_+	host-nuclease inhibitor protein Gam	A0A125RNF6	Pseudomonas_phage	1.8e-46	58.5
AYL56278.1\|1341155_1341812_+	hypothetical protein	A0A291AUJ5	Sinorhizobium_phage	8.4e-14	48.9
AYL56279.1\|1341789_1342317_+	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	7.6e-42	50.0
AYL56280.1\|1342313_1342721_+	transcriptional regulator	A0A0C4UR27	Shigella_phage	2.3e-38	63.5
AYL56281.1\|1342733_1343252_+	hypothetical protein	NA	NA	NA	NA
AYL56282.1\|1343337_1343928_+	peptidoglycan-binding protein	A0A2I7S9B9	Vibrio_phage	1.8e-36	46.2
AYL56283.1\|1343929_1344148_+	hypothetical protein	A0A0C4UQR6	Shigella_phage	1.0e-24	69.4
AYL56284.1\|1344140_1344548_+	hypothetical protein	NA	NA	NA	NA
AYL56285.1\|1344535_1345144_+	hypothetical protein	NA	NA	NA	NA
AYL56286.1\|1345140_1345347_+	conjugal transfer protein TraR	NA	NA	NA	NA
AYL56287.1\|1345347_1345653_+	DUF2730 domain-containing protein	M1Q558	Vibrio_phage	5.6e-13	38.3
AYL59799.1\|1345665_1345953_+	hypothetical protein	M1PPT9	Vibrio_phage	4.6e-25	64.5
AYL56288.1\|1345955_1346330_+	hypothetical protein	NA	NA	NA	NA
AYL56289.1\|1346322_1346601_+	hypothetical protein	NA	NA	NA	NA
AYL56290.1\|1346590_1347169_+	DUF3486 domain-containing protein	M4MCR3	Vibrio_phage	9.6e-46	55.0
AYL56291.1\|1347165_1348749_+	hypothetical protein	M4MHG0	Vibrio_phage	1.0e-198	68.9
AYL56292.1\|1348748_1350317_+	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	5.1e-158	56.2
AYL56293.1\|1350309_1351098_+	hypothetical protein	M4M9M5	Vibrio_phage	2.1e-91	57.6
AYL56294.1\|1351307_1352264_+	peptidase	M1Q578	Vibrio_phage	9.8e-80	50.6
AYL56295.1\|1352267_1353161_+\|head	phage head protein	M4MB71	Vibrio_phage	1.3e-94	56.4
AYL56296.1\|1353244_1353838_+	hypothetical protein	NA	NA	NA	NA
AYL56297.1\|1353837_1354278_+	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	1.4e-33	47.9
AYL56298.1\|1354277_1354820_+	phage morphogenesis protein	M4MB67	Vibrio_phage	1.4e-54	59.2
AYL56299.1\|1354816_1355440_+	hypothetical protein	M4MHF0	Vibrio_phage	1.7e-35	44.5
AYL56300.1\|1355420_1355609_+	DUF2635 domain-containing protein	NA	NA	NA	NA
AYL56301.1\|1355608_1357087_+\|tail	phage tail protein	M1Q565	Vibrio_phage	2.2e-150	53.8
AYL59800.1\|1357441_1357828_+\|tail	phage tail protein	A0A0M4S6V4	Salmonella_phage	3.1e-24	75.0
AYL56302.1\|1358002_1358557_+	DNA-invertase	A0A0F7LA37	Escherichia_phage	6.9e-86	85.7
AYL56303.1\|1358815_1359514_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-89	68.1
AYL59801.1\|1359599_1359920_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	3.2e-19	44.8
AYL56304.1\|1359964_1361254_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	3.2e-166	70.4
AYL56305.1\|1361266_1361692_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	6.1e-50	70.0
AYL56306.1\|1361756_1362917_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.6e-39	36.4
AYL56307.1\|1363158_1363371_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.3e-19	85.2
AYL59802.1\|1363889_1364375_+	hypothetical protein	A0A1B0VBR9	Salmonella_phage	2.3e-08	34.9
AYL56308.1\|1364385_1364640_+	hypothetical protein	NA	NA	NA	NA
AYL56309.1\|1364906_1365179_-	hypothetical protein	NA	NA	NA	NA
AYL56310.1\|1366360_1367529_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-166	89.5
AYL56311.1\|1368056_1369208_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	6.4e-41	35.0
1367543:1368792	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1458903 : 1483082

Cronobacter_phage(29.41%)

tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL56394.1\|1458903_1460379_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	2.9e-155	60.0
AYL56395.1\|1460483_1460981_+	hypothetical protein	F1C5F0	Cronobacter_phage	1.1e-85	87.9
AYL56396.1\|1460980_1461451_+	hypothetical protein	F1C5F1	Cronobacter_phage	1.4e-79	93.6
AYL56397.1\|1461413_1461830_+	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	1.4e-67	84.6
AYL56398.1\|1461816_1464294_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	87.6
AYL56399.1\|1466571_1467822_-	glucosyl transferase	O22006	Shigella_phage	1.4e-62	38.6
AYL56400.1\|1467814_1468741_-	glycosyltransferase	B9UDL7	Salmonella_phage	9.0e-155	89.4
AYL59812.1\|1468737_1469100_-	GtrA family protein	I1TED9	Salmonella_phage	3.4e-49	78.3
AYL56401.1\|1469493_1471422_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	4.4e-127	36.8
AYL56402.1\|1471425_1471968_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	8.2e-15	32.9
AYL56403.1\|1472064_1472262_+	50S ribosomal protein L35	NA	NA	NA	NA
AYL56404.1\|1472317_1472674_+	50S ribosomal protein L20	NA	NA	NA	NA
AYL56405.1\|1473044_1474028_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	2.4e-33	38.5
AYL56406.1\|1474043_1476431_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
AYL56407.1\|1476435_1476735_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
AYL59813.1\|1476888_1477869_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.7e-15	24.8
AYL56408.1\|1477929_1478481_+	glutathione peroxidase	NA	NA	NA	NA
AYL56409.1\|1478480_1479230_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	30.3
AYL56410.1\|1479307_1479772_+	endopeptidase	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
AYL56411.1\|1480088_1480802_+	EAL domain-containing protein	NA	NA	NA	NA
AYL56412.1\|1480863_1482306_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	7.7e-52	35.3
AYL56413.1\|1482302_1483082_-	heme ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	7.9e-11	26.7

DBSCAN-SWA_4

1961021 : 2037671

Escherichia_phage(37.93%)

holin,integrase,protease,transposase,coat,tail,terminase

attL 1991906:1991922|attR 2038583:2038599

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL56834.1\|1961021_1962068_-\|protease	protease SohB	NA	NA	NA	NA
AYL56835.1\|1962289_1963051_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	3.0e-07	23.7
AYL56836.1\|1963047_1963638_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
AYL56837.1\|1963721_1964597_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
AYL56838.1\|1965319_1966488_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-166	89.5
AYL59835.1\|1966771_1967503_-	HNH endonuclease	NA	NA	NA	NA
AYL56839.1\|1967855_1968476_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
AYL56840.1\|1968472_1969351_-	5'-3' exoribonuclease	NA	NA	NA	NA
AYL56841.1\|1969625_1971188_+	anthranilate synthase component 1	NA	NA	NA	NA
AYL56842.1\|1971187_1972783_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.2e-51	38.6
AYL59836.1\|1972786_1974145_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.5e-38	41.2
AYL56843.1\|1974155_1975349_+	tryptophan synthase subunit beta	NA	NA	NA	NA
AYL56844.1\|1975348_1976155_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
AYL56845.1\|1977846_1978122_-	hypothetical protein	NA	NA	NA	NA
AYL56846.1\|1978361_1978820_+	hypothetical protein	NA	NA	NA	NA
AYL56847.1\|1978892_1979609_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AYL56848.1\|1980177_1980831_-	outer membrane protein OmpW	NA	NA	NA	NA
AYL56849.1\|1981229_1981973_+	UPF0259 family protein	NA	NA	NA	NA
AYL56850.1\|1982027_1982567_+	septation protein A	NA	NA	NA	NA
AYL56851.1\|1982732_1983134_+	acyl-CoA thioesterase	NA	NA	NA	NA
AYL59837.1\|1983198_1983918_-	TonB system transport protein TonB	NA	NA	NA	NA
AYL56852.1\|1984142_1984439_+	hypothetical protein	NA	NA	NA	NA
AYL56853.1\|1984590_1985262_+	DUF159 family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-80	59.9
AYL56854.1\|1985254_1986523_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.7e-202	80.6
AYL56855.1\|1986524_1986944_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	2.7e-34	55.9
AYL56856.1\|1987021_1987264_+	DNA-damage-inducible protein I	Q6UAW0	Klebsiella_phage	9.9e-29	75.3
AYL56857.1\|1987392_1988613_-	hypothetical protein	K7P7B1	Enterobacteria_phage	1.9e-67	68.4
AYL56858.1\|1988622_1989567_-	hypothetical protein	H6WRW5	Salmonella_phage	2.1e-119	67.1
AYL56859.1\|1989568_1992802_-	host specificity protein	G8C7R4	Escherichia_phage	0.0e+00	83.1
1991906:1991922	attL	NA	NA	NA	NA
AYL56860.1\|1992857_1993451_-\|tail	tail assembly protein	G8C7R3	Escherichia_phage	1.5e-81	81.9
AYL56861.1\|1993438_1994170_-	peptidase P60	G8C7R2	Escherichia_phage	4.2e-139	90.1
AYL56862.1\|1994182_1994956_-\|tail	phage minor tail protein L	G8C7R1	Escherichia_phage	2.8e-133	89.0
AYL56863.1\|1994964_1995315_-	hypothetical protein	G8C7R0	Escherichia_phage	2.6e-54	90.5
AYL56864.1\|1995378_1995753_-	type II toxin-antitoxin system death-on-curing family toxin	A0A222YZ88	Escherichia_phage	1.7e-19	43.2
AYL56865.1\|1995749_1996364_-	hypothetical protein	NA	NA	NA	NA
AYL56866.1\|1997012_1997237_-	hypothetical protein	NA	NA	NA	NA
AYL56867.1\|1997236_2000368_-\|tail	phage tail tape measure protein	G8C7Q6	Escherichia_phage	5.2e-162	40.4
AYL56868.1\|2000367_2000655_-	hypothetical protein	I6PD79	Cronobacter_phage	2.5e-18	61.5
AYL56869.1\|2000672_2001011_-	hypothetical protein	G8C7Q5	Escherichia_phage	1.2e-51	89.3
AYL56870.1\|2001052_2001985_-\|tail	phage tail protein	G8C7Q3	Escherichia_phage	2.0e-154	91.3
AYL56871.1\|2002031_2002481_-	hypothetical protein	G8C7Q2	Escherichia_phage	1.4e-60	76.5
AYL56872.1\|2002470_2003070_-	hypothetical protein	G8C7Q1	Escherichia_phage	4.4e-102	92.5
AYL56873.1\|2003072_2003426_-	hypothetical protein	G8C7Q0	Escherichia_phage	4.2e-52	89.7
AYL56874.1\|2003427_2003910_-	hypothetical protein	G8C7P9	Escherichia_phage	9.3e-79	87.5
AYL56875.1\|2003912_2004098_-	hypothetical protein	G8C7P8	Escherichia_phage	7.8e-26	91.8
AYL56876.1\|2004137_2005277_-\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	2.8e-174	84.0
AYL56877.1\|2005294_2006047_-	hypothetical protein	G8C7P6	Escherichia_phage	1.9e-123	92.0
AYL56878.1\|2006154_2006364_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.0e-13	50.0
AYL56879.1\|2006367_2007474_-	hypothetical protein	G8C7P5	Escherichia_phage	2.8e-187	90.2
AYL56880.1\|2007475_2008879_-	DNA-binding protein	G8C7P4	Escherichia_phage	9.6e-241	90.6
AYL56881.1\|2008883_2010455_-\|terminase	terminase	G8C7P3	Escherichia_phage	1.3e-307	92.7
AYL56882.1\|2010451_2011024_-\|terminase	terminase small subunit	I6PDJ6	Cronobacter_phage	7.0e-65	80.0
AYL56883.1\|2011044_2011476_+	hypothetical protein	NA	NA	NA	NA
AYL56884.1\|2011589_2011784_-	hypothetical protein	NA	NA	NA	NA
AYL56885.1\|2012079_2012295_+	KTSC domain-containing protein	NA	NA	NA	NA
AYL56886.1\|2012298_2012832_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.6e-10	51.9
AYL56887.1\|2012828_2013377_-	lysozyme	K7PM52	Enterobacteria_phage	9.2e-99	93.4
AYL56888.1\|2013348_2013627_-\|holin	holin	K7PGZ9	Enterobacteria_phage	5.1e-45	97.8
AYL56889.1\|2014048_2014879_-	antitermination protein	K7PKS8	Enterobacteria_phage	1.6e-155	98.9
AYL56890.1\|2014875_2015016_-	hypothetical protein	K7PHH3	Enterobacteria_phage	1.2e-18	95.7
AYL56891.1\|2015012_2015621_-	protein NinG	A0A0M4RU10	Salmonella_phage	6.3e-48	64.7
AYL56892.1\|2015623_2015830_-	hypothetical protein	S4TNP0	Salmonella_phage	6.2e-24	72.1
AYL56893.1\|2015829_2016432_-	hypothetical protein	A0A0M4QX23	Salmonella_phage	2.8e-104	92.0
AYL56894.1\|2016532_2016733_-	hypothetical protein	NA	NA	NA	NA
AYL56895.1\|2016838_2018881_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	2.2e-198	52.4
AYL56896.1\|2018877_2019135_-	hypothetical protein	NA	NA	NA	NA
AYL56897.1\|2019134_2019362_-	hypothetical protein	NA	NA	NA	NA
AYL56898.1\|2020414_2020993_-	hypothetical protein	K7PLZ3	Enterobacterial_phage	6.2e-45	71.2
AYL56899.1\|2020989_2021451_-	hypothetical protein	NA	NA	NA	NA
AYL56900.1\|2021809_2022121_-	hypothetical protein	NA	NA	NA	NA
AYL56901.1\|2022123_2022876_-	hypothetical protein	NA	NA	NA	NA
AYL56902.1\|2022887_2023580_-	phage replication protein	G8C7U6	Escherichia_phage	1.9e-77	60.9
AYL59838.1\|2023563_2024556_-	replication protein	A5VW95	Enterobacteria_phage	2.7e-48	75.0
AYL56903.1\|2024740_2025280_-	regulator	K7PJT7	Enterobacteria_phage	7.5e-77	82.1
AYL56904.1\|2025311_2025539_-	Cro/Cl family transcriptional regulator	A0A2I6PIE5	Escherichia_phage	2.4e-16	56.3
AYL56905.1\|2025574_2026330_+	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	1.1e-70	54.3
AYL56906.1\|2026398_2027160_+	DNA-binding protein	A0A1L2BWW1	Bacteriophage	8.5e-10	46.3
AYL56907.1\|2027190_2027415_-	hypothetical protein	K7P7I0	Enterobacteria_phage	1.2e-15	64.7
AYL59839.1\|2027742_2027949_+	cell division inhibitor protein	K7P6H3	Enterobacteria_phage	1.6e-32	98.5
AYL56908.1\|2027960_2028122_+	hypothetical protein	K7PGY4	Enterobacteria_phage	1.3e-21	92.5
AYL56909.1\|2028261_2031111_+	exodeoxyribonuclease VIII	K7P6V4	Enterobacteria_phage	2.0e-285	59.2
AYL56910.1\|2031125_2032166_+	enterohemolysin	K7P7N5	Enterobacteria_phage	4.3e-153	74.6
AYL56911.1\|2032200_2032545_+	hypothetical protein	NA	NA	NA	NA
AYL56912.1\|2032537_2032741_+	hypothetical protein	A0A1B0VN94	Pseudomonas_phage	1.7e-10	66.7
AYL56913.1\|2032727_2032970_+	DUF4060 domain-containing protein	K7PHF4	Enterobacteria_phage	2.5e-32	87.3
AYL56914.1\|2033015_2033216_+	excisionase	K7PM28	Enterobacteria_phage	1.9e-25	82.5
AYL56915.1\|2033208_2034402_-\|integrase	integrase	K7PGY1	Enterobacteria_phage	7.9e-204	84.4
AYL56916.1\|2034656_2034830_-	hypothetical protein	NA	NA	NA	NA
AYL56917.1\|2034972_2036433_+	cardiolipin synthase	NA	NA	NA	NA
AYL56918.1\|2036467_2036797_+	dsDNA-mimic protein	NA	NA	NA	NA
AYL56919.1\|2036834_2037671_-	transporter	A0A1B0Y2S3	Lactobacillus_phage	1.4e-08	40.0
2038583:2038599	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2187127 : 2240130

Enterobacteria_phage(31.82%)

portal,integrase,holin,protease,tail

attL 2198492:2198517|attR 2240263:2240288

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL57056.1\|2187127_2188009_-\|protease	protease HtpX	NA	NA	NA	NA
AYL57057.1\|2188201_2190250_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.2e-87	33.7
AYL57058.1\|2190269_2190956_-	RNA chaperone ProQ	NA	NA	NA	NA
AYL57059.1\|2191052_2191550_-	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA
AYL57060.1\|2191678_2192962_+	hypothetical protein	NA	NA	NA	NA
AYL57061.1\|2192930_2195564_+	MCE family protein	NA	NA	NA	NA
AYL57062.1\|2195643_2197065_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AYL57063.1\|2197162_2197402_+	DUF1480 domain-containing protein	NA	NA	NA	NA
AYL57064.1\|2197504_2197696_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AYL57065.1\|2197696_2198338_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.7e-56	50.5
2198492:2198517	attL	NA	NA	NA	NA
AYL59847.1\|2198678_2198777_+	hypothetical protein	S4TND2	Salmonella_phage	1.8e-05	85.7
AYL57066.1\|2198889_2199558_+	DUF159 family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	2.4e-80	59.9
AYL57067.1\|2199558_2199948_-	DNA polymerase V	Q1MVE7	Enterobacteria_phage	1.1e-50	72.1
AYL57068.1\|2200267_2200510_+	DNA-damage-inducible protein I	Q6UAW0	Klebsiella_phage	4.7e-31	79.7
AYL57069.1\|2200610_2201351_+	hypothetical protein	NA	NA	NA	NA
AYL57070.1\|2201347_2202166_+	DUF3037 domain-containing protein	NA	NA	NA	NA
AYL57071.1\|2202340_2203897_-	hypothetical protein	O64338	Escherichia_phage	7.9e-87	43.6
AYL57072.1\|2203958_2207528_-	host specificity protein	O64335	Escherichia_phage	0.0e+00	86.5
AYL59848.1\|2207580_2208183_-\|tail	phage tail protein	K7PHE5	Enterobacteria_phage	1.6e-72	73.5
AYL57073.1\|2208603_2209314_-	peptidase P60	K7PGR2	Enterobacteria_phage	3.7e-140	94.1
AYL57074.1\|2209315_2210071_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	2.8e-130	86.5
AYL57075.1\|2210067_2210415_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	9.5e-41	69.6
AYL57076.1\|2210418_2213562_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	0.0e+00	86.0
AYL57077.1\|2213545_2213860_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	2.4e-51	91.3
AYL57078.1\|2213868_2214300_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	7.1e-54	74.1
AYL57079.1\|2214310_2215054_-\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	8.1e-114	85.8
AYL57080.1\|2215063_2215465_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	9.8e-66	89.5
AYL57081.1\|2215461_2216040_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.2e-93	96.4
AYL57082.1\|2216049_2216325_-	ATP-binding protein	K7PH43	Enterobacteria_phage	2.0e-25	60.4
AYL59849.1\|2216317_2216644_-	DUF2190 domain-containing protein	K7PJY3	Enterobacterial_phage	1.2e-29	59.3
AYL57083.1\|2216735_2218769_-	peptidase S14	K7PKX4	Enterobacterial_phage	0.0e+00	84.6
AYL57084.1\|2218713_2220222_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	2.4e-258	86.7
AYL59850.1\|2220218_2220434_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.5e-25	82.9
AYL57085.1\|2220430_2222533_-	DNA packaging protein	K7PH52	Enterobacterial_phage	0.0e+00	87.3
AYL57086.1\|2222532_2223021_-	DUF1441 domain-containing protein	K7PJY2	Enterobacterial_phage	8.9e-77	94.4
AYL57087.1\|2223271_2223475_-	hypothetical protein	A0A1W6JPG4	Morganella_phage	2.0e-06	62.9
AYL57088.1\|2223927_2224494_-	DUF2514 domain-containing protein	NA	NA	NA	NA
AYL57089.1\|2224472_2225021_-	lysozyme	K7PM52	Enterobacteria_phage	1.4e-99	95.6
AYL57090.1\|2224992_2225271_-\|holin	holin	K7PGZ9	Enterobacteria_phage	4.3e-44	95.7
AYL57091.1\|2225301_2225583_+	hypothetical protein	NA	NA	NA	NA
AYL57092.1\|2225652_2226258_-	hypothetical protein	H9C175	Pectobacterium_phage	3.3e-81	71.0
AYL57093.1\|2226271_2227312_-	hypothetical protein	A0A291AWV9	Escherichia_phage	3.3e-97	50.6
AYL57094.1\|2227308_2227668_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	1.0e-42	65.3
AYL57095.1\|2227670_2227871_-	hypothetical protein	H6WRY8	Salmonella_phage	7.2e-17	61.5
AYL57096.1\|2228000_2228246_-	hypothetical protein	H6WRY6	Salmonella_phage	4.5e-21	63.5
AYL57097.1\|2228291_2228525_-	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	3.3e-37	97.4
AYL57098.1\|2228831_2229110_-	hypothetical protein	NA	NA	NA	NA
AYL57099.1\|2230367_2230808_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.6e-37	75.2
AYL57100.1\|2230804_2231320_-	hypothetical protein	G9L6B3	Escherichia_phage	4.9e-94	91.8
AYL57101.1\|2231321_2231624_-	hypothetical protein	I6RSM9	Salmonella_phage	1.6e-20	87.5
AYL59851.1\|2231620_2231959_-	DNA breaking-rejoining protein	H6WRX9	Salmonella_phage	1.3e-15	46.7
AYL57102.1\|2231964_2232381_-	hypothetical protein	NA	NA	NA	NA
AYL57103.1\|2232396_2232987_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.8e-69	77.8
AYL57104.1\|2234017_2234572_-	hypothetical protein	NA	NA	NA	NA
AYL59852.1\|2234574_2234805_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	3.6e-20	59.2
AYL57105.1\|2234894_2235323_+	transcriptional regulator	H6WRX4	Salmonella_phage	1.7e-39	62.7
AYL57106.1\|2235536_2235752_+	hypothetical protein	NA	NA	NA	NA
AYL59853.1\|2235809_2236136_+	transcriptional regulator	NA	NA	NA	NA
AYL57107.1\|2236277_2238749_+	exodeoxyribonuclease VIII	K7P6V4	Enterobacteria_phage	2.1e-110	38.0
AYL57108.1\|2238794_2239073_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.9e-12	40.3
AYL57109.1\|2239050_2240130_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	2.1e-110	55.3
2240263:2240288	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2264568 : 2314575

Enterobacteria_phage(32.0%)

portal,capsid,holin,integrase,head,protease,tail,terminase,tRNA

attL 2305101:2305116|attR 2320681:2320696

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL57135.1\|2264568_2266341_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AYL57136.1\|2266414_2266651_+	hypothetical protein	NA	NA	NA	NA
AYL57137.1\|2266607_2267174_+	hydrolase	NA	NA	NA	NA
AYL59856.1\|2267255_2267372_-	preprotein translocase subunit SecY	NA	NA	NA	NA
AYL57138.1\|2267527_2267767_+	DinI family protein	K7PKR6	Enterobacteria_phage	7.4e-37	100.0
AYL57139.1\|2267852_2268263_-	hemerythrin	NA	NA	NA	NA
AYL57140.1\|2268454_2268787_-	hypothetical protein	K7PGV5	Enterobacterial_phage	2.3e-20	54.2
AYL57141.1\|2268865_2269108_+	DinI family protein	Q6UAW0	Klebsiella_phage	3.4e-29	76.6
AYL57142.1\|2269236_2270457_-	hypothetical protein	K7P7B1	Enterobacteria_phage	3.8e-68	69.4
AYL57143.1\|2270466_2271411_-	hypothetical protein	H6WRW5	Salmonella_phage	1.2e-117	66.5
AYL57144.1\|2271410_2274131_-\|tail	phage tail protein	S4TTF5	Salmonella_phage	0.0e+00	92.4
AYL57145.1\|2274130_2274529_-	hypothetical protein	S4TR39	Salmonella_phage	1.5e-69	93.9
AYL57146.1\|2274535_2275120_-	hypothetical protein	S4TND4	Salmonella_phage	7.8e-104	96.4
AYL57147.1\|2275119_2275713_-	hypothetical protein	S4TSP7	Salmonella_phage	1.2e-107	95.9
AYL57148.1\|2275878_2276103_+	hypothetical protein	NA	NA	NA	NA
AYL57149.1\|2276091_2276451_-	hypothetical protein	NA	NA	NA	NA
AYL57150.1\|2276493_2278968_-\|tail	phage tail tape measure protein	K7PM62	Enterobacteria_phage	5.4e-255	63.7
AYL57151.1\|2279041_2279761_-	hypothetical protein	NA	NA	NA	NA
AYL57152.1\|2279823_2280126_-\|tail	phage tail protein	Q9MCU7	Escherichia_phage	6.1e-28	61.2
AYL57153.1\|2280110_2280491_-\|tail	phage tail protein	K7PJU9	Enterobacteria_phage	1.0e-43	76.6
AYL57154.1\|2280544_2281036_-\|tail	phage tail protein	A0A286S1Q8	Klebsiella_phage	1.1e-61	70.0
AYL57155.1\|2281095_2281461_-	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	1.9e-47	69.4
AYL57156.1\|2281457_2281997_-	hypothetical protein	K7PM60	Enterobacteria_phage	1.3e-81	87.7
AYL57157.1\|2281989_2282322_-\|head,tail	head-tail adaptor protein	K7PH08	Enterobacteria_phage	7.9e-53	90.0
AYL57158.1\|2282323_2282536_-	hypothetical protein	NA	NA	NA	NA
AYL57159.1\|2282599_2282926_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	7.0e-54	93.5
AYL57160.1\|2283237_2284455_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	4.6e-183	81.7
AYL57161.1\|2284465_2285320_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	4.5e-124	80.3
AYL57162.1\|2285332_2286640_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	5.1e-212	84.1
AYL57163.1\|2286639_2288382_-\|terminase	phage terminase small subunit P27 family	M4QNU0	Tetraselmis_viridis_virus	2.3e-135	42.9
AYL57164.1\|2288335_2288800_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.8e-47	61.4
AYL59857.1\|2288919_2289261_-	HNH endonuclease	A0A2I6PIG1	Escherichia_phage	3.0e-47	74.8
AYL57165.1\|2289320_2289506_-	Eag protein	K7PL40	Enterobacteria_phage	1.5e-05	50.0
AYL57166.1\|2289636_2289870_-	hypothetical protein	NA	NA	NA	NA
AYL59858.1\|2290965_2291505_-	hypothetical protein	K7P6W1	Enterobacteria_phage	7.3e-56	73.8
AYL57167.1\|2291525_2292014_-	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	1.4e-66	71.3
AYL59859.1\|2291997_2292330_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	4.3e-51	89.0
AYL57168.1\|2292781_2293315_-	hypothetical protein	NA	NA	NA	NA
AYL57169.1\|2293528_2294398_+	hypothetical protein	NA	NA	NA	NA
AYL57170.1\|2294660_2295083_+	hypothetical protein	NA	NA	NA	NA
AYL57171.1\|2295105_2295471_-	antitermination protein Q	K7PGW2	Enterobacterial_phage	1.7e-56	89.2
AYL57172.1\|2295488_2296484_-	hypothetical protein	A0A291AWV9	Escherichia_phage	6.5e-143	69.6
AYL57173.1\|2296480_2297164_-	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	7.1e-64	60.4
AYL57174.1\|2297177_2297564_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	2.4e-61	89.1
AYL57175.1\|2297678_2298572_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.8e-134	77.8
AYL57176.1\|2298568_2299435_-	GntR family transcriptional regulator	U5P0A0	Shigella_phage	1.9e-34	87.8
AYL57177.1\|2299424_2299565_-	DUF4222 domain-containing protein	A0A1C9IHY9	Salmonella_phage	2.2e-09	80.0
AYL57178.1\|2299776_2300328_-	DNA-binding protein	A0A1C9II13	Salmonella_phage	6.1e-66	68.4
AYL57179.1\|2300356_2300554_-	hypothetical protein	K7PHB1	Enterobacterial_phage	1.2e-19	73.8
AYL59860.1\|2300653_2301310_+	LexA family transcriptional repressor	K7PLZ5	Enterobacterial_phage	1.8e-85	66.5
AYL57180.1\|2301662_2301863_-	hypothetical protein	A0A1C9IHY8	Salmonella_phage	1.7e-05	69.4
AYL57181.1\|2301941_2302184_+	hypothetical protein	U5P4J6	Shigella_phage	3.7e-07	66.7
AYL57182.1\|2302194_2303112_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	3.8e-105	64.0
AYL57183.1\|2303497_2304037_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	9.5e-80	80.4
AYL57184.1\|2304197_2304452_+	hypothetical protein	NA	NA	NA	NA
AYL57185.1\|2304448_2304943_+	hypothetical protein	Q76H45	Enterobacteria_phage	2.6e-15	44.1
AYL57186.1\|2304944_2305445_+	hypothetical protein	S5VZS4	Pseudomonas_phage	4.6e-28	58.6
2305101:2305116	attL	NA	NA	NA	NA
AYL57187.1\|2305434_2305875_+	hypothetical protein	A0A088CE95	Shigella_phage	2.8e-13	42.9
AYL57188.1\|2305876_2306449_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	8.7e-92	81.1
AYL57189.1\|2306486_2306723_+	excisionase	Q8W657	Enterobacteria_phage	2.1e-39	92.3
AYL57190.1\|2306781_2308095_+\|integrase	integrase	Q8W658	Enterobacteria_phage	2.8e-234	89.2
AYL57191.1\|2308082_2308847_+	hypothetical protein	Q859D1	Escherichia_coli_phage	1.2e-56	79.5
AYL57192.1\|2308899_2309295_+	hypothetical protein	NA	NA	NA	NA
AYL57193.1\|2309335_2310079_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	3.2e-25	31.3
AYL57194.1\|2310075_2311044_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
AYL57195.1\|2311064_2311253_-	hypothetical protein	NA	NA	NA	NA
AYL57196.1\|2311287_2312034_-	copper homeostasis protein CutC	NA	NA	NA	NA
AYL57197.1\|2312036_2312603_-	VOC family protein	NA	NA	NA	NA
AYL57198.1\|2312841_2314575_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.7e-85	33.6
2320681:2320696	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2489557 : 2497063

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL57370.1\|2489557_2490106_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.0e-49	54.4
AYL57371.1\|2490108_2490987_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.7e-107	63.4
AYL57372.1\|2491040_2491940_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	2.1e-31	36.3
AYL57373.1\|2491939_2493025_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.2e-99	53.1
AYL57374.1\|2493393_2494287_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	3.3e-45	40.3
AYL57375.1\|2494524_2495520_-	UDP-N-acetylglucosamine 4-epimerase	A0A0K1L6Z1	Scale_drop_disease_virus	1.9e-09	28.1
AYL57376.1\|2495668_2497063_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.1e-22	35.0

DBSCAN-SWA_8

2538913 : 2548491

Bacillus_phage(28.57%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL57406.1\|2538913_2540317_+	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	3.9e-32	29.6
AYL57407.1\|2540313_2541036_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	9.2e-30	32.7
AYL57408.1\|2541171_2541504_+	DUF1508 domain-containing protein	NA	NA	NA	NA
AYL57409.1\|2541663_2543025_+	U32 family peptidase	Q6DW11	Phage_TP	5.3e-204	92.9
AYL57410.1\|2543294_2545571_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
AYL57411.1\|2545601_2545922_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
AYL57412.1\|2546245_2546470_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
AYL57413.1\|2546544_2548491_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.4e-40	41.8

DBSCAN-SWA_9

2586639 : 2595058

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL57450.1\|2586639_2588673_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.0e-54	27.6
AYL57451.1\|2588879_2589338_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	6.6e-50	68.6
AYL59869.1\|2589380_2589851_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	4.9e-64	76.9
AYL57452.1\|2589897_2590617_-	two-component system response regulator YehT	NA	NA	NA	NA
AYL57453.1\|2590613_2592299_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-281	91.6
AYL57454.1\|2592524_2593256_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.0e-105	93.5
AYL57455.1\|2593307_2593415_+	hypothetical protein	NA	NA	NA	NA
AYL57456.1\|2593395_2594127_-	ABC transporter permease	NA	NA	NA	NA
AYL57457.1\|2594110_2595058_-	ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.1

DBSCAN-SWA_10

3570198 : 3577322

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL58291.1\|3570198_3570552_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	47.2
AYL58292.1\|3570608_3571088_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.8e-34	51.3
AYL58293.1\|3571110_3571476_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
AYL58294.1\|3571499_3573266_+	arsenical pump-driving ATPase	NA	NA	NA	NA
AYL58295.1\|3573306_3574596_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	3.3e-171	72.5
AYL58296.1\|3574653_3575082_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.8e-49	70.7
AYL58297.1\|3575154_3575664_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	6.5e-22	37.8
AYL58298.1\|3575803_3576301_+	phosphatase	NA	NA	NA	NA
AYL58299.1\|3576599_3577322_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.8e-97	73.0

DBSCAN-SWA_11

4886736 : 4937260

Shigella_phage(18.18%)

transposase,integrase

attL 4876822:4876843|attR 4937416:4937437

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4876822:4876843	attL	NA	NA	NA	NA
AYL59956.1\|4886736_4887943_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.0e-102	63.1
AYL59468.1\|4888391_4888616_-	hypothetical protein	NA	NA	NA	NA
AYL59469.1\|4888844_4889060_+	glycogen synthesis protein GlgS	NA	NA	NA	NA
AYL59470.1\|4889662_4890271_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AYL59471.1\|4890267_4891419_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AYL59472.1\|4891415_4892621_+	ABC transporter permease	NA	NA	NA	NA
AYL59473.1\|4892622_4893333_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-31	38.8
AYL59474.1\|4893361_4893835_+	cytochrome C	NA	NA	NA	NA
AYL59475.1\|4893821_4895309_+	RND transporter	NA	NA	NA	NA
AYL59957.1\|4895439_4895997_+\|transposase	transposase	A0A1B0V7I5	Salmonella_phage	7.5e-48	80.5
AYL59476.1\|4895999_4898972_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	71.9
AYL59477.1\|4900093_4901095_-	hypothetical protein	NA	NA	NA	NA
AYL59478.1\|4901221_4901884_+	DUF1956 domain-containing protein	NA	NA	NA	NA
AYL59479.1\|4905233_4906514_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
AYL59480.1\|4906659_4908828_-	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA
AYL59481.1\|4909584_4909800_-	glycogen synthesis protein GlgS	NA	NA	NA	NA
AYL59482.1\|4910028_4910253_+	hypothetical protein	NA	NA	NA	NA
AYL59483.1\|4910700_4911908_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.0e-102	63.1
AYL59484.1\|4911950_4913543_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	8.8e-174	60.6
AYL59485.1\|4913573_4913924_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	9.6e-41	67.2
AYL59486.1\|4913920_4914325_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.6e-23	67.5
AYL59487.1\|4915108_4915405_-	hypothetical protein	NA	NA	NA	NA
AYL59488.1\|4916279_4917224_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.1e-54	40.6
AYL59489.1\|4917546_4917783_+	antitoxin	NA	NA	NA	NA
AYL59490.1\|4917785_4918100_+	plasmid maintenance protein CcdB	NA	NA	NA	NA
AYL59491.1\|4918096_4918849_-	molybdopterin-guanine dinucleotide biosynthesis protein MobC	NA	NA	NA	NA
AYL59492.1\|4918857_4920594_-	MFS transporter	NA	NA	NA	NA
AYL59493.1\|4921369_4921675_-	dpoa decarboxylase	NA	NA	NA	NA
AYL59494.1\|4921723_4922026_-	kikA from plasmid origin	NA	NA	NA	NA
AYL59495.1\|4922074_4922473_-	Cag pathogenicity island protein Cag12	NA	NA	NA	NA
AYL59496.1\|4922469_4923495_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
AYL59497.1\|4923484_4924711_-	type VI secretion protein	NA	NA	NA	NA
AYL59498.1\|4924724_4925633_-	P-type conjugative transfer protein VirB9	NA	NA	NA	NA
AYL59499.1\|4925629_4926313_-	type IV secretion system protein	NA	NA	NA	NA
AYL59500.1\|4926536_4927604_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AYL59958.1\|4927615_4927831_-	hypothetical protein	NA	NA	NA	NA
AYL59501.1\|4927861_4928566_-	type IV secretion system protein VirB5	NA	NA	NA	NA
AYL59502.1\|4928586_4931331_-	ATPase	NA	NA	NA	NA
AYL59503.1\|4931341_4931635_-	TriB protein	NA	NA	NA	NA
AYL59504.1\|4931634_4932345_-	type VI secretion protein	NA	NA	NA	NA
AYL59505.1\|4932421_4932655_-	hypothetical protein	NA	NA	NA	NA
AYL59506.1\|4933049_4933259_-	conjugal transfer protein TraR	NA	NA	NA	NA
AYL59507.1\|4933248_4933839_-	DUF2857 domain-containing protein	NA	NA	NA	NA
AYL59508.1\|4933861_4934047_-	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	7.3e-08	50.0
AYL59509.1\|4934182_4935109_-	hypothetical protein	NA	NA	NA	NA
AYL59510.1\|4935991_4937260_-\|integrase	integrase	Q7M297	Enterobacteria_phage	8.8e-68	36.0
4937416:4937437	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP024678

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8951 : 24603

Enterobacteria_phage(18.18%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYL59974.1\|8951_11822_-	hypothetical protein	A0A1B2LRT6	Wolbachia_phage	3.2e-17	34.2
AYL59975.1\|11868_12018_-	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
AYL59976.1\|12135_12555_-	DUF1380 domain-containing protein	NA	NA	NA	NA
AYL59977.1\|12565_12787_-	hypothetical protein	NA	NA	NA	NA
AYL59978.1\|12786_13464_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.9e-29	37.4
AYL59979.1\|13815_14487_+	DNA breaking-rejoining protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.5e-79	59.5
AYL59980.1\|14666_15089_+	peptidase	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
AYL59981.1\|15088_16360_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.7e-157	64.2
AYL59982.1\|16505_17477_-	chromosome partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	9.6e-115	68.9
AYL59983.1\|17473_18679_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
AYL59984.1\|19286_21113_+	OLD family endonuclease	E5E3R2	Burkholderia_phage	1.5e-12	23.2
AYL59985.1\|21284_21635_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	2.4e-20	55.2
AYL59986.1\|21783_22215_-	copper-binding protein	NA	NA	NA	NA
AYL59987.1\|22451_23930_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	1.8e-27	31.0
AYL59988.1\|23922_24603_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.9e-32	36.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP024677

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP024678

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection