CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP032929	Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence	0 crisprs	NA	0
CP032928	Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence	0 crisprs	csa3	0
CP032926	Agrobacterium tumefaciens strain 1D1460 chromosome circular, complete sequence	0 crisprs	WYL,csa3,cas3,DEDDh	6
CP032927	Agrobacterium tumefaciens strain 1D1460 chromosome linear, complete sequence	0 crisprs	DEDDh,csa3	3

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

599219 : 610210

Arthrobacter_phage(16.67%)

head,protease,portal,capsid,terminase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM04828.1\|599219_600479_+\|terminase	large terminase phage packaging protein	A0A0U4IJ26	Arthrobacter_phage	4.5e-72	42.5
AYM04829.1\|600610_600718_-	hypothetical protein	NA	NA	NA	NA
AYM04830.1\|600925_601564_+	chitinase	R9U4A9	Rhizobium_phage	4.0e-37	43.4
AYM04831.1\|601608_601932_+	stress responsive protein	NA	NA	NA	NA
AYM04832.1\|602186_603353_+\|head,portal	phage head portal protein	W8ECU7	Geobacillus_phage	1.1e-61	37.5
AYM04833.1\|603548_603869_+	hypothetical protein	NA	NA	NA	NA
AYM04834.1\|603897_604506_+\|head,protease	phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.8e-26	40.5
AYM04835.1\|604536_605805_+\|capsid	phage phi-C31 major capsid gp36-like protein	Q3HQT0	Burkholderia_phage	1.4e-76	42.7
AYM04836.1\|606000_606570_+	hypothetical protein	NA	NA	NA	NA
AYM04837.1\|606573_606909_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AYM04838.1\|606905_607301_+	hypothetical protein	NA	NA	NA	NA
AYM04839.1\|607308_608865_-	MFS permease	NA	NA	NA	NA
AYM04840.1\|608994_609354_+	hypothetical protein	NA	NA	NA	NA
AYM04841.1\|609350_609560_+	hypothetical protein	NA	NA	NA	NA
AYM04842.1\|609628_610210_+\|tail	tail protein	C9EHA7	Sodalis_phage	9.4e-09	38.0

DBSCAN-SWA_2

1276401 : 1285097

uncultured_Mediterranean_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM05489.1\|1276401_1277934_+	long-chain acyl-CoA synthetase	A0A2K9L3I8	Tupanvirus	6.7e-22	23.3
AYM05490.1\|1277917_1279663_+	diaminopimelate decarboxylase	NA	NA	NA	NA
AYM05491.1\|1279687_1280845_-	para-aminobenzoate synthase component I	S4VT78	Pandoravirus	1.4e-43	44.6
AYM05492.1\|1280882_1282013_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.4e-104	53.0
AYM05493.1\|1282012_1283095_-\|tRNA	S-adenosylmethionine tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AYM05494.1\|1283415_1283925_-	peptidyl-prolyl cis-trans isomerase B (cyclophilin B)	A0A1B1IVS0	uncultured_Mediterranean_phage	1.4e-45	58.8
AYM05495.1\|1283961_1284531_-	peptidyl-prolyl cis-trans isomerase A (cyclophilin A)	A0A1B1IVS0	uncultured_Mediterranean_phage	3.2e-46	54.6
AYM05496.1\|1284560_1285097_-	phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	9.2e-27	39.0

DBSCAN-SWA_3

1301521 : 1309937

uncultured_Mediterranean_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM05513.1\|1301521_1302991_-	lipoprotein	I3PV24	Clostridium_phage	1.0e-11	30.4
AYM05514.1\|1303430_1304084_-	protein-L-isoaspartate O-methyltransferase	A0A1J0MC37	Streptomyces_phage	1.0e-11	35.1
AYM05515.1\|1304080_1304851_-	stationary-phase survival protein	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.5e-25	31.0
AYM05516.1\|1305049_1306333_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.8e-98	46.0
AYM05517.1\|1306435_1307239_-	sec-independent protein translocase protein TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	6.8e-42	41.2
AYM05518.1\|1307235_1307973_-	sec-independent protein translocase protein TatB	NA	NA	NA	NA
AYM05519.1\|1308029_1308236_-	sec-independent protein translocase protein TatA	A0A1B1IVR9	uncultured_Mediterranean_phage	2.1e-08	69.8
AYM05520.1\|1308364_1309099_-	segregation and condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	1.3e-39	47.6
AYM05521.1\|1309088_1309937_-	segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.2e-34	35.8

DBSCAN-SWA_4

1409248 : 1416690

Rhizobium_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM05621.1\|1409248_1409902_-	hypothetical protein	A0A0K1LM09	Rhodobacter_phage	1.6e-28	41.9
AYM05622.1\|1409898_1410324_-	hypothetical protein	A0A0F7L746	uncultured_marine_virus	7.6e-24	47.7
AYM05623.1\|1410320_1410599_-	hypothetical protein	NA	NA	NA	NA
AYM05624.1\|1410798_1410981_-	hypothetical protein	NA	NA	NA	NA
AYM05625.1\|1410980_1411637_-	hypothetical protein	B4UTT6	Rhizobium_phage	9.2e-61	51.0
AYM05626.1\|1411633_1412206_-	hypothetical protein	NA	NA	NA	NA
AYM05627.1\|1412663_1413917_-	hypothetical protein	B4UTT2	Rhizobium_phage	9.9e-181	77.3
AYM05628.1\|1413967_1414204_-	hypothetical protein	B4UTT3	Rhizobium_phage	5.5e-32	74.4
AYM05629.1\|1414203_1414866_-	hypothetical protein	B4UTS4	Rhizobium_phage	5.5e-37	49.0
AYM05630.1\|1415042_1415282_+	hypothetical protein	NA	NA	NA	NA
AYM05631.1\|1415355_1415562_+	hypothetical protein	NA	NA	NA	NA
AYM05632.1\|1415533_1416025_+	hypothetical protein	NA	NA	NA	NA
AYM05633.1\|1416027_1416690_+	hypothetical protein	A0A291AUP1	Sinorhizobium_phage	1.0e-75	57.3

DBSCAN-SWA_5

1421017 : 1444899

Sinorhizobium_phage(23.53%)

terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM05644.1\|1421017_1421944_-	hypothetical protein	A0A1B1IHU6	Skeletonema_virus	4.0e-09	32.7
AYM05645.1\|1422487_1422673_-	hypothetical protein	NA	NA	NA	NA
AYM05646.1\|1422731_1423130_-	hypothetical protein	A0A291AUN7	Sinorhizobium_phage	1.3e-12	44.3
AYM05647.1\|1423129_1424365_-	hypothetical protein	A0A291AUN5	Sinorhizobium_phage	1.4e-30	52.5
AYM05648.1\|1424388_1427310_-	hypothetical protein	G8DH58	Emiliania_huxleyi_virus	5.8e-107	37.8
AYM05649.1\|1427354_1427783_-	hypothetical protein	NA	NA	NA	NA
AYM05650.1\|1427782_1428448_-	hypothetical protein	NA	NA	NA	NA
AYM05651.1\|1428475_1429120_-	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	4.7e-09	30.5
AYM05652.1\|1429207_1429702_+	hypothetical protein	NA	NA	NA	NA
AYM05653.1\|1429763_1430063_-	hypothetical protein	NA	NA	NA	NA
AYM05654.1\|1430062_1432420_-\|tail	tail protein	A0A2D2W291	Sinorhizobium_phage	1.0e-53	33.6
AYM05655.1\|1432473_1432920_+	hypothetical protein	M4STD1	Rhodobacter_phage	6.7e-23	40.4
AYM05656.1\|1432936_1433269_+	hypothetical protein	NA	NA	NA	NA
AYM05657.1\|1433469_1433829_-	hypothetical protein	NA	NA	NA	NA
AYM05658.1\|1433830_1434262_-	hypothetical protein	NA	NA	NA	NA
AYM05659.1\|1434296_1434707_-	hypothetical protein	I3UM06	Rhodobacter_phage	2.7e-10	37.0
AYM05660.1\|1434706_1435201_-	hypothetical protein	NA	NA	NA	NA
AYM05661.1\|1435197_1435554_-	hypothetical protein	NA	NA	NA	NA
AYM05662.1\|1435679_1436027_-	hypothetical protein	A0A2H4J711	uncultured_Caudovirales_phage	6.9e-07	36.4
AYM05663.1\|1436028_1436370_-	hypothetical protein	A0A0H4INV0	Stenotrophomonas_phage	2.3e-07	52.6
AYM05664.1\|1436347_1436608_-	hypothetical protein	NA	NA	NA	NA
AYM05665.1\|1436655_1437864_-	hypothetical protein	Q6JIM7	Burkholderia_virus	3.7e-116	59.7
AYM05666.1\|1437876_1438995_-	hypothetical protein	K4HZZ6	Acidithiobacillus_phage	7.3e-34	34.7
AYM05667.1\|1439004_1440234_-	hypothetical protein	A0A0U4IIV7	Pseudomonas_phage	2.5e-67	38.0
AYM05668.1\|1440258_1441902_-\|terminase	terminase	B4UTP0	Rhizobium_phage	3.1e-222	75.0
AYM05669.1\|1441914_1442370_-	hypothetical protein	B4UTN9	Rhizobium_phage	2.0e-51	70.9
AYM05670.1\|1442496_1442817_-	hypothetical protein	NA	NA	NA	NA
AYM05671.1\|1442819_1443137_-	hypothetical protein	A0A286N2R3	Klebsiella_phage	3.8e-20	60.5
AYM05672.1\|1443472_1444390_-	hypothetical protein	NA	NA	NA	NA
AYM05673.1\|1444428_1444899_-	hypothetical protein	B4UTZ1	Rhizobium_phage	1.1e-47	70.5

DBSCAN-SWA_6

1457846 : 1468769

Rhizobium_phage(90.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM05687.1\|1457846_1459601_-	hypothetical protein	B4UTX6	Rhizobium_phage	1.9e-137	43.5
AYM05688.1\|1459609_1459888_+	hypothetical protein	NA	NA	NA	NA
AYM05689.1\|1459884_1460421_-	hypothetical protein	B4UTX5	Rhizobium_phage	4.3e-08	29.0
AYM05690.1\|1460444_1461374_-	hypothetical protein	B4UTX3	Rhizobium_phage	6.3e-156	83.1
AYM05691.1\|1461373_1461661_-	hypothetical protein	NA	NA	NA	NA
AYM05692.1\|1461664_1462717_-	hypothetical protein	B4UTW9	Rhizobium_phage	1.8e-98	56.3
AYM05693.1\|1462775_1463612_-	hypothetical protein	K4FB09	Cronobacter_phage	6.5e-35	38.8
AYM05694.1\|1463675_1464254_-	hypothetical protein	NA	NA	NA	NA
AYM05695.1\|1464436_1465210_-	hypothetical protein	B4UTW5	Rhizobium_phage	3.8e-122	81.7
AYM05696.1\|1465299_1465527_-	hypothetical protein	NA	NA	NA	NA
AYM05697.1\|1465523_1465670_-	hypothetical protein	NA	NA	NA	NA
AYM05698.1\|1465666_1465978_-	hypothetical protein	NA	NA	NA	NA
AYM05699.1\|1466038_1467187_-	hypothetical protein	B4UTW2	Rhizobium_phage	5.8e-10	29.1
AYM05700.1\|1467186_1467468_-	hypothetical protein	B4UTW1	Rhizobium_phage	1.1e-26	58.3
AYM05701.1\|1467464_1467713_-	hypothetical protein	NA	NA	NA	NA
AYM05702.1\|1467709_1468060_-	hypothetical protein	B4UTW0	Rhizobium_phage	1.8e-07	43.2
AYM05703.1\|1468166_1468769_+	hypothetical protein	B4UTV8	Rhizobium_phage	2.7e-43	45.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032927

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1759651 : 1769201

Wolbachia_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM08607.1\|1759651_1759960_-\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	1.8e-22	50.0
AYM08608.1\|1759956_1760322_-	hypothetical protein	NA	NA	NA	NA
AYM08609.1\|1760385_1760868_-	hypothetical protein	NA	NA	NA	NA
AYM08610.1\|1760812_1762576_-	ATP-binding cassette, subfamily B, bacterial	W8CYL7	Bacillus_phage	2.1e-51	28.7
AYM08611.1\|1763066_1764092_-\|transposase	transposase	Q9JMP3	Wolbachia_phage	6.2e-48	34.3
AYM08612.1\|1764091_1764376_-	hypothetical protein	Q9JMP3	Wolbachia_phage	6.2e-06	55.6
AYM08613.1\|1764505_1764889_+	hypothetical protein	NA	NA	NA	NA
AYM08614.1\|1764885_1765230_+	hypothetical protein	S5VXZ8	Leptospira_phage	1.7e-10	31.6
AYM08615.1\|1765303_1766893_+	hypothetical protein	A0A218MNE7	uncultured_virus	1.7e-52	32.7
AYM08616.1\|1767335_1768502_+	hypothetical protein	O41091	Paramecium_bursaria_Chlorella_virus	1.8e-104	50.8
AYM08617.1\|1768664_1769201_+	hypothetical protein	Q9ZXG3	Shigella_phage	1.6e-31	49.7

DBSCAN-SWA_2

1781588 : 1792816

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM08627.1\|1781588_1784657_+	hypothetical protein	A0A1V0SAH6	Catovirus	1.7e-08	33.3
AYM08628.1\|1784780_1785257_-	hypothetical protein	S5WIU1	Leptospira_phage	1.4e-34	44.4
AYM08629.1\|1785315_1785948_-	hypothetical protein	S5WIU1	Leptospira_phage	4.6e-33	43.4
AYM08630.1\|1786141_1786975_-	hypothetical protein	NA	NA	NA	NA
AYM08631.1\|1787103_1787970_-	hypothetical protein	I7I009	Enterobacteria_phage	1.5e-95	58.7
AYM08632.1\|1787966_1788860_-	hypothetical protein	I7HXC9	Enterobacteria_phage	9.0e-35	36.6
AYM08633.1\|1788864_1789920_-	hypothetical protein	I7HTA3	Enterobacteria_phage	7.5e-97	52.5
AYM08634.1\|1789922_1790492_-	hypothetical protein	I7HJC4	Enterobacteria_phage	6.8e-36	42.8
AYM08635.1\|1790749_1792816_-	ATP-dependent DNA helicase	A7KV33	Bacillus_phage	1.6e-66	29.6

DBSCAN-SWA_3

2065064 : 2072265

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM08884.1\|2065064_2065295_+	30S ribosomal protein S21	M1HLV7	Pelagibacter_phage	1.9e-05	52.4
AYM08885.1\|2065416_2066112_-	hypothetical protein	NA	NA	NA	NA
AYM08886.1\|2066108_2066498_-	hypothetical protein	NA	NA	NA	NA
AYM08887.1\|2066603_2066924_-	hypothetical protein	NA	NA	NA	NA
AYM08888.1\|2066983_2067292_+	hypothetical protein	Q9ETV7	Enterobacteria_phage	7.2e-16	52.6
AYM08889.1\|2067279_2068869_-	hypothetical protein	A0A218MNE7	uncultured_virus	1.7e-52	32.7
AYM08890.1\|2068942_2069287_-	hypothetical protein	S5VXZ8	Leptospira_phage	1.7e-10	31.6
AYM08891.1\|2069283_2069667_-	hypothetical protein	NA	NA	NA	NA
AYM08892.1\|2069811_2070045_+	hypothetical protein	Q6H9S6	Enterobacteria_phage	9.9e-10	48.6
AYM08893.1\|2070606_2071440_-	hypothetical protein	NA	NA	NA	NA
AYM08894.1\|2071524_2072265_+	hypothetical protein	Q9MBM9	Staphylococcus_prophage	1.5e-27	36.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032926

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP032927

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection